Citrus Sinensis ID: 025133
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | 2.2.26 [Sep-21-2011] | |||||||
| Q99MB4 | 394 | COBW domain-containing pr | yes | no | 0.926 | 0.604 | 0.454 | 7e-53 | |
| Q8VEH6 | 393 | COBW domain-containing pr | yes | no | 0.910 | 0.595 | 0.465 | 2e-52 | |
| Q9BRT8 | 395 | COBW domain-containing pr | yes | no | 0.875 | 0.569 | 0.460 | 5e-52 | |
| Q8IUF1 | 395 | COBW domain-containing pr | yes | no | 0.875 | 0.569 | 0.456 | 2e-51 | |
| Q5JTY5 | 395 | COBW domain-containing pr | yes | no | 0.875 | 0.569 | 0.452 | 3e-50 | |
| Q4V339 | 395 | COBW domain-containing pr | yes | no | 0.875 | 0.569 | 0.447 | 6e-50 | |
| Q5RIA9 | 395 | COBW domain-containing pr | yes | no | 0.875 | 0.569 | 0.447 | 8e-50 | |
| O74310 | 411 | COBW domain-containing pr | yes | no | 0.789 | 0.493 | 0.469 | 2e-46 | |
| P53729 | 429 | Uncharacterized protein Y | yes | no | 0.887 | 0.531 | 0.371 | 3e-38 | |
| Q869Q0 | 475 | COBW domain-containing pr | no | no | 0.797 | 0.431 | 0.354 | 1e-30 |
| >sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 207 bits (526), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI 61
E+ ED P V I ET H+ + + + + VT++TG+LGAGK+TL+NYIL +H ++I
Sbjct: 12 EEYAEDCPELVPI-ETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKI 70
Query: 62 AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERL 121
AVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K +
Sbjct: 71 AVILNEFGEGSAVEKSLAV-SQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKF 129
Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181
D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + + EA
Sbjct: 130 DYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEA 189
Query: 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241
Q+A AD++++NK DLVS E L++L I IN L V+ + R + LS +L+
Sbjct: 190 TRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLH 245
Query: 242 AYDA 245
AYD
Sbjct: 246 AYDT 249
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 160/245 (65%), Gaps = 11/245 (4%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
E+ ED P V I+ E EN D + VT++TG+LGAGK+TL+NYIL +H +
Sbjct: 12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
+IAVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K
Sbjct: 68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
+ D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + +
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186
Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
EA Q+A AD++++NK DLVS E L+ L I IN L V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242
Query: 240 CRAYD 244
AYD
Sbjct: 243 LHAYD 247
|
Mus musculus (taxid: 10090) |
| >sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
|
Homo sapiens (taxid: 9606) |
| >sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
|
Homo sapiens (taxid: 9606) |
| >sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 152/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
|
Homo sapiens (taxid: 9606) |
| >sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 152/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L + IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 151/230 (65%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+ S+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
|
Homo sapiens (taxid: 9606) |
| >sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 148/213 (69%), Gaps = 10/213 (4%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
V VT++TGFLGAGK++L+ IL ++GKR+AV++NE G+ +ER+++ + G L EEW
Sbjct: 61 VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAV 151
V L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA WLDD L+S V
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDV 180
Query: 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDEL 211
+LD I+TV+D KN ID S I QI+ AD +ILNK DL+S E +L +
Sbjct: 181 KLDGIVTVIDCKN----IDNILKDESDIGFI-QISHADCLILNKTDLISSE----ALSVV 231
Query: 212 EKEIHEINSLAHVIRSVRCQV-DLSEVLNCRAY 243
+ I +IN LA +I + ++ D+SE+L+ AY
Sbjct: 232 RQTILKINCLAKIIETTYGRLDDISEILDLDAY 264
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 153/245 (62%), Gaps = 17/245 (6%)
Query: 13 RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72
+++ T+ ++ HE + V ++ITG+LG+GKSTL+ I K+IAVILNEFG+
Sbjct: 54 QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSS 111
Query: 73 GVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGL 131
+E+AM + G +EW++L NGC+CC++K+ V+A+E +V+R ++D+ILLET+G+
Sbjct: 112 EIEKAMTIK-NGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGI 170
Query: 132 ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHL------SSYPE 180
A+PAP+A + W D+ L S+V +D IITV+D +++L ID + H +
Sbjct: 171 ADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTI 230
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A Q+A AD +I+NK D + E S + + +L++ + EINS+A + + + +L+
Sbjct: 231 AHFQLAMADRIIMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDI 288
Query: 241 RAYDA 245
AYD+
Sbjct: 289 HAYDS 293
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 32/237 (13%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-------- 85
V+V++GFLG+GK+TL+NYILN HG +IAVI+N+ E+ ++ +I E E
Sbjct: 45 VSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMS-EVNIDSKLILENEFKITRTKATE 103
Query: 86 ALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD- 144
VE VE++NGCICCT++ L+ + +L + K R D++++E++G++ P P+A +
Sbjct: 104 KQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEI 162
Query: 145 ----DQLESAVRLDSIITVVDAKNLLFQI-------DKYRHLSSYPEA------IHQIAF 187
+ L+ +LD+++TVVD L Q DK + E + Q+ F
Sbjct: 163 DGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEF 222
Query: 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244
++V++LNK DLVS ER + +E I IN A ++RS V L E+LN +D
Sbjct: 223 SNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFD 275
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| 297738062 | 621 | unnamed protein product [Vitis vinifera] | 0.945 | 0.391 | 0.821 | 1e-111 | |
| 225423525 | 368 | PREDICTED: COBW domain-containing protei | 0.945 | 0.660 | 0.821 | 1e-110 | |
| 145336129 | 374 | Cobalamin biosynthesis CobW-like protein | 0.941 | 0.647 | 0.772 | 1e-104 | |
| 449523868 | 367 | PREDICTED: COBW domain-containing protei | 0.937 | 0.656 | 0.780 | 1e-104 | |
| 62321492 | 364 | hypothetical protein [Arabidopsis thalia | 0.941 | 0.664 | 0.772 | 1e-104 | |
| 224101437 | 375 | predicted protein [Populus trichocarpa] | 0.953 | 0.653 | 0.776 | 1e-103 | |
| 297845544 | 374 | hypothetical protein ARALYDRAFT_472757 [ | 0.937 | 0.644 | 0.763 | 1e-103 | |
| 449452867 | 374 | PREDICTED: COBW domain-containing protei | 0.937 | 0.644 | 0.759 | 1e-102 | |
| 255542064 | 413 | protein with unknown function [Ricinus c | 0.929 | 0.578 | 0.783 | 1e-101 | |
| 388495078 | 390 | unknown [Lotus japonicus] | 0.926 | 0.610 | 0.752 | 2e-99 |
| >gi|297738062|emb|CBI27263.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 223/246 (90%), Gaps = 3/246 (1%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
ME+E+EDPPLAV I+++T S +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1 MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58 IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIITVVDAKNL FQ++ + SS+PE
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A QIAFADVVILNKVDLVSPE SG L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237
Query: 241 RAYDAT 246
RAYDAT
Sbjct: 238 RAYDAT 243
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423525|ref|XP_002274691.1| PREDICTED: COBW domain-containing protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 223/246 (90%), Gaps = 3/246 (1%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
ME+E+EDPPLAV I+++T S +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1 MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58 IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIITVVDAKNL FQ++ + SS+PE
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A QIAFADVVILNKVDLVSPE SG L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237
Query: 241 RAYDAT 246
RAYDAT
Sbjct: 238 RAYDAT 243
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145336129|ref|NP_173974.3| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] gi|63147374|gb|AAY34160.1| At1g26520 [Arabidopsis thaliana] gi|332192579|gb|AEE30700.1| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/246 (77%), Positives = 216/246 (87%), Gaps = 4/246 (1%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
MED++E+PP+AV+I +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11 MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R SS+PE
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A +QIAFAD +I+NKVDL+S E S DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246
Query: 241 RAYDAT 246
+AYD+T
Sbjct: 247 QAYDST 252
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523868|ref|XP_004168945.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/242 (78%), Positives = 214/242 (88%), Gaps = 1/242 (0%)
Query: 4 EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
E+EDPPLAV I ET HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2 EDEDPPLAVEIGETITAVQQ-HEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
Query: 64 ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61 ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120
Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183
ILLETTGLANPAPLASVLWLDDQLES+++LDSIITVVDAKNL FQ++++R SS+PEA H
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180
Query: 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243
QI FAD +ILNKVDLVS +R +L++LE EI INSLA +I SVRCQVDLS +L+C +Y
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLAKIIHSVRCQVDLSLILDCNSY 240
Query: 244 DA 245
+A
Sbjct: 241 NA 242
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|62321492|dbj|BAD94941.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/246 (77%), Positives = 216/246 (87%), Gaps = 4/246 (1%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
MED++E+PP+AV+I +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 1 MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 60
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 61 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 120
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R SS+PE
Sbjct: 121 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 180
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A +QIAFAD +I+NKVDL+S E S DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 181 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 236
Query: 241 RAYDAT 246
+AYD+T
Sbjct: 237 QAYDST 242
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101437|ref|XP_002312279.1| predicted protein [Populus trichocarpa] gi|222852099|gb|EEE89646.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/250 (77%), Positives = 223/250 (89%), Gaps = 5/250 (2%)
Query: 1 MEDEEEDPPLAVRIDETTH-EFSNSH----ENDDVSVGVTVITGFLGAGKSTLVNYILNG 55
ME EE+D PLAV ++ET + S+SH + +DV VGVTVITG+LG+GKSTLVN+ILN
Sbjct: 1 MEKEEDDAPLAVELEETVPVKPSSSHSKQPQGEDVPVGVTVITGYLGSGKSTLVNHILNT 60
Query: 56 KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115
+HGKRIAVILNEFGEEIGVERAMINEGE GALVEEWVELANGC+CCTVKHSLVQALEQLV
Sbjct: 61 QHGKRIAVILNEFGEEIGVERAMINEGEDGALVEEWVELANGCVCCTVKHSLVQALEQLV 120
Query: 116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL 175
Q KERLDHILLETTGLANPAPLASVLWLDDQLESAV+LDSIITVVDAKNL +Q+++ ++
Sbjct: 121 QMKERLDHILLETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLHYQLNELQNS 180
Query: 176 SSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLS 235
SS+PEA QIAFADV+ILNKVDLVS SG++L ELE EIH+INSLA++I SVRCQVDLS
Sbjct: 181 SSFPEASLQIAFADVIILNKVDLVSLGGSGEALKELENEIHKINSLANIIHSVRCQVDLS 240
Query: 236 EVLNCRAYDA 245
++LNCRAYD+
Sbjct: 241 KILNCRAYDS 250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845544|ref|XP_002890653.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] gi|297336495|gb|EFH66912.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/245 (76%), Positives = 214/245 (87%), Gaps = 4/245 (1%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
MED++E+PP+A++I +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11 MEDDDEEPPMAIQIQPDVSVRKILSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R SS+ E
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFSE 190
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A +QIAFAD +I+NKVDL+S E S DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246
Query: 241 RAYDA 245
+AYD+
Sbjct: 247 QAYDS 251
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452867|ref|XP_004144180.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/249 (75%), Positives = 214/249 (85%), Gaps = 8/249 (3%)
Query: 4 EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
E+EDPPLAV I ET HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2 EDEDPPLAVEIGETITAVQ-QHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
Query: 64 ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61 ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120
Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183
ILLETTGLANPAPLASVLWLDDQLES+++LDSIITVVDAKNL FQ++++R SS+PEA H
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180
Query: 184 QIAFADVVILNKVDLVSPERSGDSLDELEKE-------IHEINSLAHVIRSVRCQVDLSE 236
QI FAD +ILNKVDLVS +R +L++LE E I INSLA +I SVRCQVDLS
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLIRNINSLAKIIHSVRCQVDLSL 240
Query: 237 VLNCRAYDA 245
+L+C +Y+A
Sbjct: 241 ILDCNSYNA 249
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542064|ref|XP_002512096.1| protein with unknown function [Ricinus communis] gi|223549276|gb|EEF50765.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/245 (78%), Positives = 214/245 (87%), Gaps = 6/245 (2%)
Query: 3 DEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIA 62
+ EEDPP+AV I S DDVSVGVTVITG+LGAGKSTLVN+ILN +HGKRIA
Sbjct: 2 ENEEDPPVAVEIASE----SERPPTDDVSVGVTVITGYLGAGKSTLVNHILNSQHGKRIA 57
Query: 63 VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RL 121
VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ KE RL
Sbjct: 58 VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQMKESRL 117
Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181
DHI++ETTGLANPAPLASVLWLDDQLES V+LDSI+TVVDAKNL FQ++ +R +S+PEA
Sbjct: 118 DHIIIETTGLANPAPLASVLWLDDQLESTVKLDSIVTVVDAKNLPFQLNNHRSSTSFPEA 177
Query: 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241
QIAFADVVILNKVDLVS E ++L+ELEKEIH INSLA++I SVRC VDLS++LNC+
Sbjct: 178 FLQIAFADVVILNKVDLVSSE-GPEALEELEKEIHNINSLANIIHSVRCHVDLSKILNCQ 236
Query: 242 AYDAT 246
AYDAT
Sbjct: 237 AYDAT 241
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495078|gb|AFK35605.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/250 (75%), Positives = 213/250 (85%), Gaps = 12/250 (4%)
Query: 3 DEEEDPPLAVRI---DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
DE+E+ PLAV+I DE+ + S SVGVT+ITG+LGAGKSTLVN+ILN +HGK
Sbjct: 30 DEDEEAPLAVQIQGLDESVSQQS--------SVGVTLITGYLGAGKSTLVNHILNSQHGK 81
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
RIAVILNEFGEEIGVERAMINEG+GGA+VEEWVELANGCICCTVKHSLVQALEQLVQRKE
Sbjct: 82 RIAVILNEFGEEIGVERAMINEGDGGAMVEEWVELANGCICCTVKHSLVQALEQLVQRKE 141
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
RLDHILLETTGLANPAPLASVLWLD+QLES V+LDSI+TVVDAKN+ QID++R SSYP
Sbjct: 142 RLDHILLETTGLANPAPLASVLWLDEQLESDVKLDSIVTVVDAKNVRLQIDQHRRSSSYP 201
Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
EA QIAFAD++ILNKVDLVS E SG +L ELE+EIH INSL +I SV+CQVDLS++LN
Sbjct: 202 EAYFQIAFADIIILNKVDLVSAEGSG-ALKELEEEIHNINSLVEIIHSVKCQVDLSKILN 260
Query: 240 CRAYDATVNP 249
AYD P
Sbjct: 261 RHAYDTARAP 270
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| TAIR|locus:2197895 | 374 | AT1G26520 "AT1G26520" [Arabido | 0.941 | 0.647 | 0.772 | 1.5e-97 | |
| UNIPROTKB|Q9BRT8 | 395 | CBWD1 "COBW domain-containing | 0.922 | 0.6 | 0.463 | 9.2e-52 | |
| RGD|708495 | 394 | Cbwd1 "COBW domain containing | 0.941 | 0.614 | 0.462 | 1.2e-51 | |
| UNIPROTKB|Q8IUF1 | 395 | CBWD2 "COBW domain-containing | 0.922 | 0.6 | 0.455 | 5.1e-51 | |
| DICTYBASE|DDB_G0281589 | 396 | DDB_G0281589 "COBW domain-cont | 0.579 | 0.376 | 0.506 | 6.8e-51 | |
| UNIPROTKB|Q5JTY5 | 395 | CBWD3 "COBW domain-containing | 0.922 | 0.6 | 0.455 | 1.3e-50 | |
| MGI|MGI:2385089 | 393 | Cbwd1 "COBW domain containing | 0.910 | 0.595 | 0.465 | 1.3e-50 | |
| UNIPROTKB|Q4V339 | 395 | CBWD6 "COBW domain-containing | 0.922 | 0.6 | 0.451 | 2.2e-50 | |
| UNIPROTKB|Q5RIA9 | 395 | CBWD5 "COBW domain-containing | 0.922 | 0.6 | 0.451 | 3.6e-50 | |
| ZFIN|ZDB-GENE-040426-2388 | 366 | cbwd "COBW domain containing" | 0.898 | 0.631 | 0.454 | 2.3e-48 |
| TAIR|locus:2197895 AT1G26520 "AT1G26520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 190/246 (77%), Positives = 216/246 (87%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
MED++E+PP+AV+I +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11 MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+TVVDAKNL FQ+++ R SS+PE
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A +QIAFAD +I+NKVDL+S E S DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246
Query: 241 RAYDAT 246
+AYD+T
Sbjct: 247 QAYDST 252
|
|
| UNIPROTKB|Q9BRT8 CBWD1 "COBW domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 115/248 (46%), Positives = 162/248 (65%)
Query: 3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
DEEEDP P V I ETT + VT+ITG+LGAGK+TL+NYIL +H
Sbjct: 9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67
Query: 58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
KR+AVILNEFGE +E+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+
Sbjct: 68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQK 126
Query: 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
K + D+ILLETTGLA+P +AS+ W+D +L S + LD IIT+VD+K L + + +
Sbjct: 127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186
Query: 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
EA Q+A AD +++NK DLV PE + + +L I IN L ++ + R +VDLS V
Sbjct: 187 INEATRQVALADAILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242
Query: 238 LNCRAYDA 245
L+ A+D+
Sbjct: 243 LDLHAFDS 250
|
|
| RGD|708495 Cbwd1 "COBW domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 117/253 (46%), Positives = 168/253 (66%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
E+ ED P V I ET H+ EN D + + VT++TG+LGAGK+TL+NYIL +H +
Sbjct: 12 EEYAEDCPELVPI-ETKHQ--EKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNR 68
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
+IAVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K
Sbjct: 69 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKG 127
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
+ D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + +
Sbjct: 128 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 187
Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
EA Q+A AD++++NK DLVS E L++L I IN L V+ + R + LS +L+
Sbjct: 188 EATRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILD 243
Query: 240 CRAYDATVNPIKL 252
AYD T++ I L
Sbjct: 244 LHAYD-TLSGISL 255
|
|
| UNIPROTKB|Q8IUF1 CBWD2 "COBW domain-containing protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 113/248 (45%), Positives = 162/248 (65%)
Query: 3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
DEEEDP P V + ETT + VT+ITG+LGAGK+TL+NYIL +H
Sbjct: 9 DEEEDPAEEDCPELVPM-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67
Query: 58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
KR+AVILNEFGE +E+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct: 68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126
Query: 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
K + D+ILLETTGLA+P +AS+ W+D +L S + LD IIT+VD+K L + + +
Sbjct: 127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGL 186
Query: 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
EA Q+A AD +++NK DLV PE + + +L I IN L ++ + R +VDLS V
Sbjct: 187 INEATRQVALADAILINKTDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNV 242
Query: 238 LNCRAYDA 245
L+ A+D+
Sbjct: 243 LDLHAFDS 250
|
|
| DICTYBASE|DDB_G0281589 DDB_G0281589 "COBW domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 77/152 (50%), Positives = 115/152 (75%)
Query: 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMI 79
E +NS+ N V V T+ITGFLG+GK+T +NYILN HGK+IAVI NE+G+ IG+E AMI
Sbjct: 3 EVTNSNINKKVPV--TLITGFLGSGKTTFLNYILNENHGKKIAVIQNEYGQSIGIETAMI 60
Query: 80 NEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS 139
+ G ++EW+E NGCICCTVK +Q++E L++R ++ D+IL+E+TG+ +P +++
Sbjct: 61 VDSNGEK-IQEWLEFPNGCICCTVKDDFLQSIEDLLKRSDKFDYILIESTGMGDPGQISA 119
Query: 140 VLWLDDQLESAVRLDSIITVVDAKNLLFQIDK 171
LW+D++LES + DSIIT+VD+K++ I+K
Sbjct: 120 SLWVDEELESPIYFDSIITLVDSKHIEKHIEK 151
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| UNIPROTKB|Q5JTY5 CBWD3 "COBW domain-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 113/248 (45%), Positives = 161/248 (64%)
Query: 3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
DEEEDP P V I ETT + VT+ITG+LGAGK+TL+NYIL +H
Sbjct: 9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67
Query: 58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
KR+AVILNE GE +E+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct: 68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126
Query: 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
K + D ILLETTGLA+P +AS+ W+D +L S + LD IIT+VD+K L + + +
Sbjct: 127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186
Query: 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
EA Q+A AD++++NK DLV PE + + +L I IN L ++ + R +VDLS V
Sbjct: 187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242
Query: 238 LNCRAYDA 245
L+ A+D+
Sbjct: 243 LDLHAFDS 250
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| MGI|MGI:2385089 Cbwd1 "COBW domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 114/245 (46%), Positives = 160/245 (65%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
E+ ED P V I+ E EN D + VT++TG+LGAGK+TL+NYIL +H +
Sbjct: 12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
+IAVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K
Sbjct: 68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
+ D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + +
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186
Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
EA Q+A AD++++NK DLVS E L+ L I IN L V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242
Query: 240 CRAYD 244
AYD
Sbjct: 243 LHAYD 247
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| UNIPROTKB|Q4V339 CBWD6 "COBW domain-containing protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 112/248 (45%), Positives = 161/248 (64%)
Query: 3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
DEEEDP P V I ETT + VT+ITG+LGAGK+TL+NYIL +H
Sbjct: 9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67
Query: 58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
KR+AVILNE GE +E+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct: 68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126
Query: 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
K + D ILLETTGLA+P +AS+ W+D +L S + LD IIT+VD+K L + + +
Sbjct: 127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186
Query: 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
EA Q+A AD++++NK DLV PE + + +L + IN L ++ + R +VDLS V
Sbjct: 187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNV 242
Query: 238 LNCRAYDA 245
L+ A+D+
Sbjct: 243 LDLHAFDS 250
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| UNIPROTKB|Q5RIA9 CBWD5 "COBW domain-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 112/248 (45%), Positives = 160/248 (64%)
Query: 3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
DEEEDP P V I ETT + VT+ITG+LGAGK+TL+NYIL +H
Sbjct: 9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67
Query: 58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
KR+AVILNE GE +E+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct: 68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126
Query: 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177
K + D ILLETTGLA+P + S+ W+D +L S + LD IIT+VD+K L + + +
Sbjct: 127 KGKFDDILLETTGLADPGAVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGL 186
Query: 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237
EA Q+A AD++++NK DLV PE + + +L I IN L ++ + R +VDLS V
Sbjct: 187 INEATRQVALADIILINKTDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNV 242
Query: 238 LNCRAYDA 245
L+ A+D+
Sbjct: 243 LDLHAFDS 250
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| ZFIN|ZDB-GENE-040426-2388 cbwd "COBW domain containing" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 111/244 (45%), Positives = 157/244 (64%)
Query: 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
MEDE+E P L V I E + VT+ITG+LGAGK+TL+NYIL +H KR
Sbjct: 1 MEDEDECPEL-VPIKEKP-------SGPTAQIPVTIITGYLGAGKTTLLNYILTEQHNKR 52
Query: 61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
IAVILNEFGE +E+++ + G L EEW+EL NGC+CC+VK + ++A+E L+++K +
Sbjct: 53 IAVILNEFGEGSALEKSLA-VSQAGELYEEWLELRNGCLCCSVKDNGLKAIENLMEKKGK 111
Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180
D+ILLETTGLA+P +AS+ W+D +L S V LD I+TV+DAK L + + + E
Sbjct: 112 FDYILLETTGLADPGAVASMFWVDAELGSDVYLDGIVTVIDAKYGLQHLTEEKPEGLINE 171
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A QIA AD+ I+NK DLV L +L + IN L ++ + + +VDLSEVL+
Sbjct: 172 AARQIALADLTIINKTDLVHETE----LLKLRDTVRSINGLVKILETQKSRVDLSEVLDL 227
Query: 241 RAYD 244
++D
Sbjct: 228 HSFD 231
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT1G26520 | unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro-IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro-IPR011629); BEST Arabidopsis thaliana protein match is- PRLI-interacting factor L, putative (TAIR-AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species- Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi [...] (374 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | UREG | UREG (UREASE ACCESSORY PROTEIN G); ATP binding / metal ion binding / nickel ion binding / nucle [...] (276 aa) | • | 0.468 | |||||||
 | GUN5 | GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase; Encodes magnesium chelatase involved in plasti [...] (1381 aa) | • | • | 0.456 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 257 | |||
| COG0523 | 323 | COG0523, COG0523, Putative GTPases (G3E family) [G | 2e-75 | |
| cd03112 | 158 | cd03112, CobW_like, The function of this protein f | 8e-64 | |
| pfam02492 | 178 | pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin | 1e-58 | |
| TIGR02475 | 341 | TIGR02475, CobW, cobalamin biosynthesis protein Co | 2e-40 | |
| PRK11537 | 318 | PRK11537, PRK11537, putative GTP-binding protein Y | 3e-36 | |
| TIGR00929 | 785 | TIGR00929, VirB4_CagE, type IV secretion/conjugal | 0.001 |
| >gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-75
Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 16/217 (7%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV-ERAMINEGEGGALVEEWV 92
VTVITGFLG+GK+TL+N++L + GK+IAVI+NEFGE +G+ A++++ EE V
Sbjct: 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVV 56
Query: 93 ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
EL NGCICCTV+ L+ ALE+L++R++R D +++ETTGLA+PAP+ D +L VR
Sbjct: 57 ELTNGCICCTVRDDLLPALERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVR 116
Query: 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELE 212
LD ++TVVDA + L +D + A Q+AFADV++LNK DLV E L+ LE
Sbjct: 117 LDGVVTVVDAAHFLEGLD-----AIAELAEDQLAFADVIVLNKTDLVDAE----ELEALE 167
Query: 213 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATVNP 249
+ ++N A +I + VDL+E+L+ +D +
Sbjct: 168 ARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDRDV 204
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Length = 323 |
| >gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 8e-64
Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 16/169 (9%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
VTV+TGFLGAGK+TL+N+IL +HG++IAVI NEFGE +G++ ++ + + EE +E
Sbjct: 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIE 55
Query: 94 LANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES 149
+ NGCICCTV+ L++AL E+L K D I++ETTGLA+P P+A ++D++L
Sbjct: 56 MNNGCICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAE 115
Query: 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198
LD +IT+VDAK+ +HL EA QIAFAD ++LNK DL
Sbjct: 116 RYLLDGVITLVDAKHAN------QHLDQQTEAQSQIAFADRILLNKTDL 158
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The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. Length = 158 |
| >gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 1e-58
Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 18/194 (9%)
Query: 34 VTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV 92
VTV+TGFLG+GK+TL+ ++L + G +IAVI+N+FGE G++ ++ E V
Sbjct: 2 VTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGE-TGIDAELLRETG-----ALIV 55
Query: 93 ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
EL NGCICCT++ L LE L++ KERLD + +ETTGLA PAP+A +L S +
Sbjct: 56 ELNNGCICCTLREDLSMVLEALLELKERLDLLFIETTGLACPAPVAQTFL-SPELRSDLG 114
Query: 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELE 212
LD ++TVVD + + +A QIAFAD++++NK DL L++LE
Sbjct: 115 LDGVVTVVDVAE-----TEGEDIP--EKAPDQIAFADLIVINKTDLAPAV---ADLEKLE 164
Query: 213 KEIHEINSLAHVIR 226
++ +N A +I
Sbjct: 165 ADLRRLNPEAPIIP 178
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This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178 |
| >gnl|CDD|233883 TIGR02475, CobW, cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-40
Identities = 79/202 (39%), Positives = 115/202 (56%), Gaps = 21/202 (10%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEE 90
+ VT++TGFLGAGK+TL+ ++L G+RIAVI+NEFG+ +G++ ++ G G E
Sbjct: 4 IPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEEN 62
Query: 91 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLES 149
VELANGCICCTV + + +L+ R++R DHIL+ET+GLA P PL W + + S
Sbjct: 63 IVELANGCICCTVADDFIPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPE--IRS 120
Query: 150 AVRLDSIITVVDAKNL--------LFQIDKYR-------HLSSYPEAIH-QIAFADVVIL 193
V +D ++TVVD + +D R H + E Q+A AD+VIL
Sbjct: 121 RVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLACADLVIL 180
Query: 194 NKVDLVSPERSGDSLDELEKEI 215
NK DL+ E+ E+
Sbjct: 181 NKADLLDAAGLARVRAEIAAEL 202
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The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683) [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 341 |
| >gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-36
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 22/212 (10%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
+ VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+ +I G +
Sbjct: 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 58 KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
LD +I +VDA + Q+++ + A Q+ +AD ++L K D+ G++
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVA-----GEA 166
Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
++L + + IN+ A V V +DLS + N
Sbjct: 167 -EKLRERLARINARAPVYTVVHGDIDLSLLFN 197
|
Length = 318 |
| >gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 23 NSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54
N H D +G T+I G G+GK+TL+N++L
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLA 456
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Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 100.0 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 100.0 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 100.0 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 100.0 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 100.0 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 99.97 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.89 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.89 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.87 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.78 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.78 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.77 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.77 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.76 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.76 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.74 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.72 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.71 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.69 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.68 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.67 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.65 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.65 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.59 | |
| PRK13768 | 253 | GTPase; Provisional | 99.58 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.57 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.57 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.56 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.56 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.55 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.55 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.55 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.54 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.54 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.54 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.52 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.52 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.52 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.51 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.5 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.5 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.5 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.5 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.49 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.49 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.49 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.49 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.48 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.48 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.47 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.47 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.46 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.46 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.45 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.45 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.45 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.44 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.43 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.42 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.42 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.41 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.41 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.41 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.41 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.39 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.39 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.39 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.38 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.38 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.36 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.36 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.35 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.34 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.33 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.33 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 99.32 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 99.31 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.3 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.29 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.29 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.29 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.28 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.27 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.25 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.25 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.24 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.24 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.24 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.23 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.23 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.23 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.23 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.23 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.22 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.22 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.22 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.21 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.21 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.21 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.21 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.21 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.21 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.2 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.2 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.2 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.2 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.2 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.19 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.19 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.19 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.19 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 99.19 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 99.19 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.18 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.18 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.18 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.18 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 99.18 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.17 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.17 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.17 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 99.17 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.16 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.16 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.16 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.15 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.15 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.15 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.14 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.14 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.14 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.14 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.13 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.13 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.13 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 99.13 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.13 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.13 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.13 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.12 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.12 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.12 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.12 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.12 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.12 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 99.12 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.11 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.11 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 99.11 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.1 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.1 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.1 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.1 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.09 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.09 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.08 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.08 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.08 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.08 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.07 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.07 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.07 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.06 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.06 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.05 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.05 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.05 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 99.04 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.04 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.04 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.04 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.04 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 99.04 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 99.03 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.03 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.03 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.02 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.02 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.02 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.02 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.02 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.02 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.01 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.01 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.01 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 98.99 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.99 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.99 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 98.99 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 98.98 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 98.98 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 98.98 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 98.98 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 98.98 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 98.98 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.98 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 98.97 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 98.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 98.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 98.97 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 98.96 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 98.96 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 98.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 98.96 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.95 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 98.95 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 98.94 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.94 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 98.94 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 98.93 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 98.92 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 98.92 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 98.92 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 98.91 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.91 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.91 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.9 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 98.9 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 98.9 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 98.9 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 98.9 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 98.89 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.89 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 98.89 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.89 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.88 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 98.88 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 98.88 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 98.87 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 98.87 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 98.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 98.86 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 98.86 | |
| PLN03108 | 210 | Rab family protein; Provisional | 98.85 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 98.84 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 98.84 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 98.83 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 98.83 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.83 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 98.83 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 98.82 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.82 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.8 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 98.8 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 98.8 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.79 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.79 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.78 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.78 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.76 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.76 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 98.75 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.75 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 98.73 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.73 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.7 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.69 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 98.68 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 98.66 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 98.66 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 98.64 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 98.64 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 98.64 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.64 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 98.64 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.62 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 98.61 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 98.61 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 98.6 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 98.6 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 98.59 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 98.58 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.58 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 98.57 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.57 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.56 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 98.56 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 98.56 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 98.55 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.55 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 98.55 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.54 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 98.49 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 98.48 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 98.48 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 98.47 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.46 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.46 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.46 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.43 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.43 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.42 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.38 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 98.38 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.38 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.37 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 98.37 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.37 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.36 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.36 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 98.36 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.3 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 98.28 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.27 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.26 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.24 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 98.23 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.23 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.22 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.22 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.21 | |
| COG1341 | 398 | Predicted GTPase or GTP-binding protein [General f | 98.2 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.2 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.19 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.19 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.18 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.17 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.17 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.16 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.16 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 98.15 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.13 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.12 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 98.11 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 98.11 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.1 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.1 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.09 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 98.09 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.09 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.06 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 98.05 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 98.05 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.04 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.04 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.03 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 98.03 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.01 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 98.01 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.01 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 98.0 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 97.99 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.99 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.98 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 97.98 | |
| cd02034 | 116 | CooC The accessory protein CooC, which contains a | 97.97 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 97.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 97.97 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.95 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 97.95 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 97.94 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 97.94 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 97.93 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 97.92 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 97.91 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 97.91 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 97.91 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 97.9 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 97.9 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.89 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 97.89 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.88 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 97.88 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 97.87 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 97.87 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.86 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 97.85 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 97.85 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 97.85 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 97.85 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.85 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 97.84 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 97.84 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.83 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 97.83 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 97.83 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.82 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 97.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.81 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 97.79 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.79 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 97.79 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 97.78 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 97.77 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 97.77 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 97.77 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 97.77 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 97.77 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.77 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.76 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.75 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 97.75 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 97.75 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 97.75 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 97.74 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.74 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 97.74 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.73 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 97.73 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 97.73 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.73 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 97.73 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.73 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 97.72 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.72 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 97.72 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.71 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 97.71 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.71 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.71 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 97.71 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 97.7 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 97.7 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 97.7 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 97.7 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 97.7 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 97.7 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 97.7 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 97.7 | |
| PRK14491 | 597 | putative bifunctional molybdopterin-guanine dinucl | 97.69 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 97.69 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 97.69 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.69 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.69 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 97.68 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.68 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.68 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 97.68 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 97.67 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 97.67 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 97.67 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 97.67 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 97.67 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 97.67 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 97.67 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 97.67 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 97.67 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 97.67 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 97.67 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 97.66 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 97.66 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 97.66 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 97.66 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.66 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.66 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 97.65 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.65 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.65 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 97.65 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.65 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 97.65 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 97.65 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.64 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 97.64 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 97.64 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.64 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.64 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 97.64 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 97.64 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.63 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.63 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.63 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 97.63 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 97.63 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.63 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.62 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 97.62 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 97.62 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.62 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.62 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 97.62 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.62 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 97.62 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 97.61 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.61 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.61 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 97.61 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 97.61 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 97.61 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 97.6 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 97.6 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.6 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 97.6 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.6 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 97.6 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.6 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 97.6 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 97.6 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 97.6 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 97.6 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 97.59 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 97.59 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 97.59 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.58 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 97.58 |
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=282.51 Aligned_cols=218 Identities=56% Similarity=0.900 Sum_probs=203.7
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
......++|+.+|+||+|||||||+|.++..++|+++|++.|++|+..+++++++.++..+...++|.++.|||+||+++
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 34567899999999999999999999999999999999999999987889999998876777788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
++...++.++.++++.+|+|++||+|++.|.++...|..+..+.....+|.+++|+|+......++...+...+.++..|
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999988887777778889999
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCC
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
+.+||.+++||+|++++++ +..+++.++.+|.-|+++.+.+++.+++.+++...|+..
T Consensus 210 iA~AD~II~NKtDli~~e~----~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ 267 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEEE----VKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSE 267 (391)
T ss_pred HhhhheeeeccccccCHHH----HHHHHHHHHHhhhHHHhhhhhhccccHHHhccccccccc
Confidence 9999999999999999865 899999999999999999999999999999999988865
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=286.62 Aligned_cols=201 Identities=48% Similarity=0.810 Sum_probs=179.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+|+++|+||+|||||||+|+|+.+..|+|+||+.||+|+ +++|. .++.... +.+.+++|||+||+.++++...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~ 74 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA 74 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence 599999999999999999999998779999999999998 99994 6665532 3588999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
+.++..+...+|+++|||+|+.+|.++.+.+.....+.....+|.+++||||.++....... ...+..|+.+||+
T Consensus 75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~-----~~~~~~Qia~AD~ 149 (323)
T COG0523 75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAI-----AELAEDQLAFADV 149 (323)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHH-----HHHHHHHHHhCcE
Confidence 99999856679999999999999999999887656788899999999999999998876532 2446799999999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~~ 247 (257)
+++||+|++++++ ++.+++.++++||.|+|+.+++++.++..+++...++..+
T Consensus 150 ivlNK~Dlv~~~~----l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~ 202 (323)
T COG0523 150 IVLNKTDLVDAEE----LEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR 202 (323)
T ss_pred EEEecccCCCHHH----HHHHHHHHHHhCCCCeEEEccccCCCHHHhhccccccccc
Confidence 9999999999864 7999999999999999999999999999999999999666
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=261.77 Aligned_cols=197 Identities=36% Similarity=0.625 Sum_probs=170.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.++|+++++||+|||||||+|+|+.+..+++++++.||+|+ +++|..++.... ..+.++.+||+||++++++..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~~ 75 (318)
T PRK11537 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELED 75 (318)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHHH
Confidence 36899999999999999999999987778999999999997 899988886421 257899999999999999999
Q ss_pred HHHHHHHhc----CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~~~~----~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
++.+++.+. .++|+|+|||+|+.+|.++.+.+.....+....+++.+++|||+.++...++. ......|+
T Consensus 76 ~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~------~~~~~~Qi 149 (318)
T PRK11537 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV 149 (318)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc------cHHHHHHH
Confidence 999998531 26999999999999999999877545567788899999999999998876543 34566899
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+.||+||+||+|++++ .+.+++.++.+||.|+++.+.++..+...+++...+.
T Consensus 150 ~~AD~IvlnK~Dl~~~------~~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~ 202 (318)
T PRK11537 150 GYADRILLTKTDVAGE------AEKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFM 202 (318)
T ss_pred HhCCEEEEeccccCCH------HHHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcC
Confidence 9999999999999974 3688999999999999999999999999988876553
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=257.38 Aligned_cols=207 Identities=38% Similarity=0.612 Sum_probs=168.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++|+++++||+|||||||+|+++....+++++++.||+|+ +++|..++.... .+...+.+.++.+||+||++++++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 5899999999999999999999987678999999999997 899998886521 11123468999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--------hh-------cc
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--------KY-------RH 174 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--------~~-------~~ 174 (257)
+|.+++.+..++|+|+|||+|+++|.++...+. ...+....+++.+++|||+.++..... .. ..
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 999998656789999999999999999998773 345667789999999999997753210 00 00
Q ss_pred CCCh-hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC-CEEEEeecCCcChhhhhcCccC
Q 025133 175 LSSY-PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 175 ~~~~-~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~-a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
...+ ..+..|++.||+|++||+|++++++ ++.+++.++.+||. ++++.+.++..+.+.+++...+
T Consensus 161 ~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~----l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~ 227 (341)
T TIGR02475 161 ETPLEELFEDQLACADLVILNKADLLDAAG----LARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAA 227 (341)
T ss_pred cchHHHHHHHHHHhCCEEEEeccccCCHHH----HHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCc
Confidence 0011 2346899999999999999999865 78999999997775 6899999999999999987543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=233.10 Aligned_cols=174 Identities=49% Similarity=0.801 Sum_probs=140.1
Q ss_pred eEEEEEecCCCcHHHHHHHHH-ccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll-~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
|+++|+||+|||||||+++|+ ...++.+++++.||+|+ .++|..++... + ..+.++.+||+||+++.++...+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~--~---~~v~~l~~gcicc~~~~~~~~~l 74 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQED--G---VPVVELNNGCICCTLRDDLVEAL 74 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTT--T----EEEEECTTTESS-TTS-HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhccc--c---eEEEEecCCCcccccHHHHHHHH
Confidence 899999999999999999999 56779999999999998 88999888763 1 24789999999999999999999
Q ss_pred HHHHHhcC--CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~--~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
.++.. .+ ++++|||||+|+++|..+... ...+.....++.+++|+|+.+|....+ . ...+..|++.||
T Consensus 75 ~~l~~-~~~~~~d~IiIE~sG~a~p~~l~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~-~-----~~~~~~Qi~~AD 144 (178)
T PF02492_consen 75 RRLLR-EYEERPDRIIIETSGLADPAPLILQ---DPPLKEDFRLDSIITVVDATNFDELEN-I-----PELLREQIAFAD 144 (178)
T ss_dssp HHHCC-CCHGC-SEEEEEEECSSGGGGHHHH---SHHHHHHESESEEEEEEEGTTHGGHTT-H-----CHHHHHHHCT-S
T ss_pred HHHHH-hcCCCcCEEEECCccccccchhhhc---cccccccccccceeEEecccccccccc-c-----hhhhhhcchhcC
Confidence 99986 44 799999999999999988321 556677889999999999998843221 1 244679999999
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
++++||+|++++++ .++.+++.++++||.++|+
T Consensus 145 vIvlnK~D~~~~~~---~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 145 VIVLNKIDLVSDEQ---KIERVREMIRELNPKAPIV 177 (178)
T ss_dssp EEEEE-GGGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred EEEEeccccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence 99999999999863 3689999999999999986
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=202.64 Aligned_cols=154 Identities=51% Similarity=0.873 Sum_probs=131.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|+++++||+|||||||++.++...++.+++++.++.|+ .++|...+.... ..+.++.+||+||++++++..++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence 78999999999999999999987668899999999997 788877765421 246789999999999999999996
Q ss_pred HHHH----hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 113 ~~~~----~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
+++. +..++++|||||||+++|.++.+.+..+..+....+++.+++++|+.++...++.. .....|++.|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~------~~~~~Qi~~a 148 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ------TEAQSQIAFA 148 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc------HHHHHHHHHC
Confidence 5543 35689999999999999999988765566677889999999999999998876542 3467999999
Q ss_pred CEEEEeCCCC
Q 025133 189 DVVILNKVDL 198 (257)
Q Consensus 189 ~vivlNK~D~ 198 (257)
|++|+||+|+
T Consensus 149 d~ivlnk~dl 158 (158)
T cd03112 149 DRILLNKTDL 158 (158)
T ss_pred CEEEEecccC
Confidence 9999999995
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-24 Score=181.08 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=136.4
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+...++|+|+||+|||||+|+|+ |.+++++++.+++ ++..+.. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QT----TR~~I~G----I~t-------------------- 50 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQT----TRNRIRG----IVT-------------------- 50 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcch----hhhheeE----EEE--------------------
Confidence 3567899999999999999999999 8999999999997 3332221 100
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+.++|||||||++.|......++.+........+|++++|+|+.......+.+ +.+.+.....|
T Consensus 51 ---------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-----il~~lk~~~~p 116 (298)
T COG1159 51 ---------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-----ILEQLKKTKTP 116 (298)
T ss_pred ---------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-----HHHHHhhcCCC
Confidence 3468899999999999987777666667777888999999999999855544432 22222223458
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC----CCCCCccccccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD----ATVNPIKLCSES 256 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~ 256 (257)
.++++||+|.++++.. +..+.+.++...++..++ +|+.++.+++.|++.+... +..+|.+..+.+
T Consensus 117 vil~iNKID~~~~~~~---l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 117 VILVVNKIDKVKPKTV---LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred eEEEEEccccCCcHHH---HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 9999999999998642 567778888888888888 8999999999888877544 444666655543
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=177.45 Aligned_cols=193 Identities=22% Similarity=0.228 Sum_probs=144.4
Q ss_pred ccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecC
Q 025133 17 TTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELA 95 (257)
Q Consensus 17 ~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~ 95 (257)
-..+..++..+...+..++.|+|+||||||||++++++. ....+++++.++.++ .. |..++.. .+. ...+++
T Consensus 89 ~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~--~g~---pvvqi~ 161 (290)
T PRK10463 89 NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRA--TGT---PAIQVN 161 (290)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHh--cCC---cEEEec
Confidence 333445566677888999999999999999999999876 345689999999987 44 6666554 122 467889
Q ss_pred CCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhcc
Q 025133 96 NGCICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (257)
Q Consensus 96 ~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~ 174 (257)
+||+||....++..++..+. ..+.+++|||+.|. ..|..+. +....+ +.|++...+.. .
T Consensus 162 tG~~Chl~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~fd--------lge~~~----v~vlsV~eg~d------k 221 (290)
T PRK10463 162 TGKGCHLDAQMIADAAPRLP--LDDNGILFIENVGNLVCPASFD--------LGEKHK----VAVLSVTEGED------K 221 (290)
T ss_pred CCCCCcCcHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCccc--------hhhcee----EEEEECccccc------c
Confidence 99999999999999999886 35679999999994 5675431 112222 35555554422 1
Q ss_pred CCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 175 ~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+|+ .|++.||++|+||+|+++... +.++.+.+.+++++|.++|+ +|++++.++++|++.+
T Consensus 222 plKyp---~~f~~ADIVVLNKiDLl~~~~--~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L 284 (290)
T PRK10463 222 PLKYP---HMFAAASLMLLNKVDLLPYLN--FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWL 284 (290)
T ss_pred chhcc---chhhcCcEEEEEhHHcCcccH--HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 12244 467889999999999986422 34788888899999999999 6999999999998765
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=168.62 Aligned_cols=188 Identities=22% Similarity=0.296 Sum_probs=134.1
Q ss_pred cCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee
Q 025133 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 22 ~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
.+++.++...+|+++|+||+|||||||+++++.+ ..+.+++++.++++. ++|...+... + ..+.++.+||+|
T Consensus 12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~--~---~~~~~l~~gcic 84 (207)
T TIGR00073 12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKY--G---APAIQINTGKEC 84 (207)
T ss_pred HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHc--C---CcEEEEcCCCcc
Confidence 4455677889999999999999999999999875 335799999999873 4566655431 1 246889999999
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
|....++...+.++. ..++++|||||+| +..+..+. + .....+.|+|+........
T Consensus 85 ~~~~~~~~~~l~~~~--~~~~d~IiIEt~G~l~~~~~~~--------~----~~~~~i~Vvd~~~~d~~~~--------- 141 (207)
T TIGR00073 85 HLDAHMVAHALEDLP--LDDIDLLFIENVGNLVCPADFD--------L----GEHMRVVLLSVTEGDDKPL--------- 141 (207)
T ss_pred cCChHHHHHHHHHhc--cCCCCEEEEecCCCcCCCcccc--------c----ccCeEEEEEecCcccchhh---------
Confidence 976666666665543 2368999999999 43332110 1 1123346888875433211
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+++.|+++++||+|+.+... .....+...+++.+|.++++ .|++++.|++++++..
T Consensus 142 ~~~~~~~~a~iiv~NK~Dl~~~~~--~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i 202 (207)
T TIGR00073 142 KYPGMFKEADLIVINKADLAEAVG--FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFL 202 (207)
T ss_pred hhHhHHhhCCEEEEEHHHccccch--hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHH
Confidence 122456789999999999986422 12566777788888888887 7999999999988764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=159.32 Aligned_cols=183 Identities=19% Similarity=0.286 Sum_probs=129.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeee-cCCCceeeccchhHH---
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE-LANGCICCTVKHSLV--- 108 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~-l~~gcicc~~~~~~~--- 108 (257)
.++++|++|||||||++++++. .+..+++++.++.+. ..+...+.... ...-+.... ..+||.||..+.++.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT--QEDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMNL 79 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC--hhHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHHH
Confidence 5899999999999999999876 445578899999875 23444333211 011112233 379999999998884
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
.+|.++..+..++|+++|||+|..-...+. ..+ .+.+++|+|+.++..... ....|+..+
T Consensus 80 ~~L~~l~~~~~~~D~iiIEt~G~~l~~~~~------~~l-----~~~~i~vvD~~~~~~~~~---------~~~~qi~~a 139 (199)
T TIGR00101 80 EAVAEMEARFPPLEMVFIESGGDNLSATFS------PEL-----ADLTIFVIDVAAGDKIPR---------KGGPGITRS 139 (199)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcccccc------hhh-----hCcEEEEEEcchhhhhhh---------hhHhHhhhc
Confidence 455555543457899999999952111110 111 367899999997765322 123689999
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|++++||+|+.+... ..++.+.+.++.+||.++++ +|++++.|+++++..+
T Consensus 140 d~~~~~k~d~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i 191 (199)
T TIGR00101 140 DLLVINKIDLAPMVG--ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWI 191 (199)
T ss_pred cEEEEEhhhcccccc--ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999986311 23788888999999999988 8999999999988765
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=151.61 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=106.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.+|+|||||+|+|+ +.+++++++.++++... +. ....
T Consensus 2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~~----i~---------~i~~-------------------- 44 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRNR----IS---------GIHT-------------------- 44 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccCc----EE---------EEEE--------------------
Confidence 58899999999999999999 67888888888863211 10 0000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+.+++|+||||+..+.......+..........+|.+++|+|++........ +...+.....|.++|+
T Consensus 45 ----~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~------i~~~l~~~~~p~ilV~ 114 (270)
T TIGR00436 45 ----TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEF------VLTKLQNLKRPVVLTR 114 (270)
T ss_pred ----cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHH------HHHHHHhcCCCEEEEE
Confidence 223568999999987653222111112223345678999999999875433211 2233344567889999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCCCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVNPI 250 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~~ 250 (257)
||+|+.+.++ ....+ ..+....+..+++ +|++.+.|++++++.+...+++.|+
T Consensus 115 NK~Dl~~~~~---~~~~~-~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 115 NKLDNKFKDK---LLPLI-DKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred ECeeCCCHHH---HHHHH-HHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999985432 12222 2333333443444 8999999999998887655554443
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=151.87 Aligned_cols=167 Identities=24% Similarity=0.323 Sum_probs=108.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+..+++++|.+|||||||+|+|+ +.+++++++.++++.. .+. ....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~~----~i~---------~i~~---------------- 49 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRH----RIR---------GIVT---------------- 49 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCcccc----cEE---------EEEE----------------
Confidence 467889999999999999999999 7788888888775211 000 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+.+++|+||||+..+.......+..........+|.+++|+|+.......... +...+.+...|.
T Consensus 50 --------~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~-----i~~~l~~~~~pv 116 (292)
T PRK00089 50 --------EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF-----ILEKLKKVKTPV 116 (292)
T ss_pred --------cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH-----HHHHHhhcCCCE
Confidence 2346799999999987754433222222334456789999999998732211110 122233335689
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
++|+||+|+....+ .+......+.+..+..+++ .|+..+.++++++..+....
T Consensus 117 ilVlNKiDl~~~~~---~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 117 ILVLNKIDLVKDKE---ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred EEEEECCcCCCCHH---HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 99999999984321 2344444555555666666 89999999998887764443
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-19 Score=140.72 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=98.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.||+|||||+|+|+ |.+ +.+.+-||.++......+.
T Consensus 2 ~ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~--------------------------------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFK--------------------------------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEE---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEE---------------------------------
Confidence 37899999999999999999 666 5678889974322111111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 114 LVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+.++.|||+||++.... ..+... ...+ .....|.+++|+||.++...+. +...+..++.|.++
T Consensus 44 ----~~~~~~~lvDlPG~ysl~~~s~ee~v~-~~~l-~~~~~D~ii~VvDa~~l~r~l~-------l~~ql~e~g~P~vv 110 (156)
T PF02421_consen 44 ----LGDQQVELVDLPGIYSLSSKSEEERVA-RDYL-LSEKPDLIIVVVDATNLERNLY-------LTLQLLELGIPVVV 110 (156)
T ss_dssp ----ETTEEEEEEE----SSSSSSSHHHHHH-HHHH-HHTSSSEEEEEEEGGGHHHHHH-------HHHHHHHTTSSEEE
T ss_pred ----ecCceEEEEECCCcccCCCCCcHHHHH-HHHH-hhcCCCEEEEECCCCCHHHHHH-------HHHHHHHcCCCEEE
Confidence 2346688999999665322 112111 1111 1346899999999998755432 23445667889999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~ 240 (257)
++||+|.+.+.......+.+.+.+. ...+..|++++.|+++|.++
T Consensus 111 vlN~~D~a~~~g~~id~~~Ls~~Lg----~pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 111 VLNKMDEAERKGIEIDAEKLSERLG----VPVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp EEETHHHHHHTTEEE-HHHHHHHHT----S-EEEEBTTTTBTHHHHHHH
T ss_pred EEeCHHHHHHcCCEECHHHHHHHhC----CCEEEEEeCCCcCHHHHHhh
Confidence 9999999987765455566666552 22344899999999998764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=154.53 Aligned_cols=159 Identities=25% Similarity=0.288 Sum_probs=119.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|+|+|+|.||+|||||.|+|+ +++.|++.+-||. ++..+.. ..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGv----TRDr~y~---------~~~------------------- 47 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGV----TRDRIYG---------DAE------------------- 47 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCC----ccCCccc---------eeE-------------------
Confidence 899999999999999999999 8999999999996 2222221 001
Q ss_pred HHHHhcCCCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 113 QLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.+|||+|+.... .+.+.+ .++.+....++|++++|||+..+....|.. +...+.....|.+
T Consensus 48 -----~~~~~f~lIDTgGl~~~~~~~l~~~i-~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~Lr~~~kpvi 116 (444)
T COG1160 48 -----WLGREFILIDTGGLDDGDEDELQELI-REQALIAIEEADVILFVVDGREGITPADEE-----IAKILRRSKKPVI 116 (444)
T ss_pred -----EcCceEEEEECCCCCcCCchHHHHHH-HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEE
Confidence 345669999999988533 444433 356677788999999999999988877754 4555666668999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
+|+||+|....+ .....+.++.-.-++.+|+.++.|+++|++.....+
T Consensus 117 LvvNK~D~~~~e-------~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 117 LVVNKIDNLKAE-------ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEEEcccCchhh-------hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 999999988543 233344455555566799999999999999986664
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=137.15 Aligned_cols=181 Identities=24% Similarity=0.265 Sum_probs=132.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+-.+.|.|++|||||+|+.+++++ ....++++|.+|.-+ ..|...+... .-.....+..|-.|+--.+....+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~----~g~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL----PGEPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC----CCCeeEEeccCCccCCcHHHHHHH
Confidence 458999999999999999999876 345899999999764 2344444431 112345566666666556778888
Q ss_pred HHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 111 LEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
+.++..+....|++|||+.| +..+.... +. -..-|+|+|...+....... +| .+..+|
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~--------L~----d~~~v~VidvteGe~~P~K~-----gP----~i~~aD 145 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSPD--------LG----DHLRVVVIDVTEGEDIPRKG-----GP----GIFKAD 145 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCcc--------hh----hceEEEEEECCCCCCCcccC-----CC----ceeEee
Confidence 88888755568999999999 66553221 11 12568999998775432211 22 344599
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+++.-. ..++...+..++.||.++++ .+.+++.|+++|++.+
T Consensus 146 llVInK~DLa~~v~--~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 146 LLVINKTDLAPYVG--ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred EEEEehHHhHHHhC--ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 99999999998755 56899999999999999998 7899999999987654
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=145.29 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc------chhhhhc--CCCCceeeeeeecCCCcee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINE--GEGGALVEEWVELANGCIC 100 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~------d~~~~~~--~~~~~~~~~~~~l~~gcic 100 (257)
+..++.|+|++|||||||++.|... ..+.+++++..||.+ ... |+..+.. ...++++ ...++ |
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s-~~~~gallgd~~r~~~~~~~~~~~~----r~~~~--~ 127 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS-TRTGGSILGDKTRMERLSRHPNAFI----RPSPS--S 127 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc-cccchhhhchHhHHHhhcCCCCeEE----EecCC--c
Confidence 4568999999999999999998764 458899999999986 222 2222321 1112222 12222 5
Q ss_pred eccch--hHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKH--SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~--~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
|.+.+ ......-+++. ..+++++||||+|+.+..... ...+|.+++|+++.........
T Consensus 128 ~~l~~~a~~~~~~~~~~~-~~g~d~viieT~Gv~qs~~~i-----------~~~aD~vlvv~~p~~gd~iq~~------- 188 (332)
T PRK09435 128 GTLGGVARKTRETMLLCE-AAGYDVILVETVGVGQSETAV-----------AGMVDFFLLLQLPGAGDELQGI------- 188 (332)
T ss_pred ccccchHHHHHHHHHHHh-ccCCCEEEEECCCCccchhHH-----------HHhCCEEEEEecCCchHHHHHH-------
Confidence 66652 22233323332 568999999999998654332 1236889999886554432111
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC----C-CEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS----L-AHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~----~-a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+++.+|++|+||+|+.+..........+...+....| + .+++ +|+.++.|+++|++.+
T Consensus 189 --k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 189 --KKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred --HhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 1237888999999999999765433445666666654442 2 4555 8999999999999877
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=135.95 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=125.6
Q ss_pred ccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCc
Q 025133 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC 98 (257)
Q Consensus 19 ~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc 98 (257)
.......+.+....|.|+++|++|+|||||||+|++ .++.|-++..||.|..+.- .
T Consensus 11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNf---------------f------ 66 (200)
T COG0218 11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINF---------------F------ 66 (200)
T ss_pred EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEE---------------E------
Confidence 344555667778999999999999999999999995 3568999999997322111 0
Q ss_pred eeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCC---cHHHHH--hcccccccccceeeeeEEEEEeccchHHHHhhhc
Q 025133 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN---PAPLAS--VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR 173 (257)
Q Consensus 99 icc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~---~~~~~~--~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~ 173 (257)
.-+..+.|||.||++- |....+ .-.+...+.....+..++.|+|+.......|..
T Consensus 67 -------------------~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e- 126 (200)
T COG0218 67 -------------------EVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDRE- 126 (200)
T ss_pred -------------------EecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHH-
Confidence 1123377999999653 222211 112345566666799999999999988876653
Q ss_pred cCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCC--EEEEeecCCcChhhhhcCcc
Q 025133 174 HLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLA--HVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 174 ~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a--~i~~s~~~~~~~~~l~~~~~ 242 (257)
+.+++.+...+.++++||+|+++..+..+.+..+...+....++. .++.|+..+.|++++...+.
T Consensus 127 ----m~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 127 ----MIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred ----HHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 567788889999999999999998764444555655555544544 34578888999998877653
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=148.73 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=111.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+ +.++++++..++++.+.... ...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~-------------~~~------------------ 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITG-------------IIT------------------ 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEE-------------EEE------------------
Confidence 3478999999999999999999 66778878777753211100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+.+++|+||||+.++.......+....+.....+|.+++|+|+.......+.. +...+.+...+.++
T Consensus 97 ------~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il~~l~~~~~p~Il 165 (339)
T PRK15494 97 ------LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----ILDKLRSLNIVPIF 165 (339)
T ss_pred ------eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEE
Confidence 2235688999999876533222111122233456789999999987643332211 22233444567889
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC----CCCCCccccc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD----ATVNPIKLCS 254 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~----~~~~~~~~~~ 254 (257)
|+||+|+.+. .+..+.+.++..++...++ +|++++.|++++++.+... +..+|.+..+
T Consensus 166 ViNKiDl~~~-----~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 166 LLNKIDIESK-----YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred EEEhhcCccc-----cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 9999998653 1566677777666666666 8999999998888877444 3345555544
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=138.24 Aligned_cols=181 Identities=22% Similarity=0.261 Sum_probs=109.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccchhhhhc--CCCCceeeeeeecCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVERAMINE--GEGGALVEEWVELANGCICC 101 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d~~~~~~--~~~~~~~~~~~~l~~gcicc 101 (257)
+..++.|+|+||+|||||+++|... ..|++++|+.-||.+.. --|+..+.. ...++++.+...-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~----- 102 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS----- 102 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS-----
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC-----
Confidence 4579999999999999999999764 46999999999986522 124444443 335677765543321
Q ss_pred ccchhHHHHHHHHH--HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 102 TVKHSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 102 ~~~~~~~~~l~~~~--~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
.+-+.....+.+ ....++|+|||||+|+.+..--.... +|.+++|+-+..+....-.
T Consensus 103 --lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~-----------aD~~v~v~~Pg~GD~iQ~~-------- 161 (266)
T PF03308_consen 103 --LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADM-----------ADTVVLVLVPGLGDEIQAI-------- 161 (266)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTT-----------SSEEEEEEESSTCCCCCTB--------
T ss_pred --CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHh-----------cCeEEEEecCCCccHHHHH--------
Confidence 122222222222 13578999999999999765443222 5788888877755432111
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-----CCCEEE-EeecCCcChhhhhcCc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN-----SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-----~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...-++.+|++|+||.|....+ ....+++..+.... +..+|+ .|+..+.|+++|++.+
T Consensus 162 -KaGimEiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i 225 (266)
T PF03308_consen 162 -KAGIMEIADIFVVNKADRPGAD---RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI 225 (266)
T ss_dssp --TTHHHH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred -hhhhhhhccEEEEeCCChHHHH---HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 1234678999999999966554 34566666665433 235677 7888899999998765
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=145.95 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=120.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++|+|.||+|||||+|+|+ ++.-+++++.+|++ +..+ ....+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGTT----RD~I---------~~~~e------------------ 222 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGTT----RDSI---------DIEFE------------------ 222 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCcc----ccce---------eeeEE------------------
Confidence 4468999999999999999999 67779999999972 2222 11122
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHH---hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~---~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+-.|.+|||.|+.....+.+ .+...+.++...+++++++|+||.......+.. +..+....+.+
T Consensus 223 ------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~ 291 (444)
T COG1160 223 ------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRG 291 (444)
T ss_pred ------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCC
Confidence 3355689999999987766554 333345567778999999999999988776643 45566777889
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++|+||||++..++ ..++.++..++... .+++++ +|+.++.++..+++....
T Consensus 292 ~vIvvNKWDl~~~~~--~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 292 IVIVVNKWDLVEEDE--ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred eEEEEEccccCCchh--hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 999999999998632 23555555555433 456665 899999999999887643
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-17 Score=144.48 Aligned_cols=163 Identities=24% Similarity=0.289 Sum_probs=116.5
Q ss_pred cCcccCCCccee-EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee
Q 025133 22 SNSHENDDVSVG-VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 22 ~~~~~~~~~~~~-vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
....+....+-+ -++|.|.||+|||||+|+|+ +++.||+++-+|+ ++..++....+
T Consensus 206 ~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GT-------------TRDviee~i~i------ 262 (454)
T COG0486 206 ATAKQGKILREGLKVVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGT-------------TRDVIEEDINL------ 262 (454)
T ss_pred HhhhhhhhhhcCceEEEECCCCCcHHHHHHHHh----cCCceEecCCCCC-------------ccceEEEEEEE------
Confidence 333333333333 37889999999999999999 6778999999998 22333334443
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
.+..+.++||.|+.+.....|.+.+++..+....+|.+++|+|++......+. .
T Consensus 263 ------------------~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--------~ 316 (454)
T COG0486 263 ------------------NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--------A 316 (454)
T ss_pred ------------------CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--------H
Confidence 34668899999999999999988888888899999999999999985332221 1
Q ss_pred HHH--HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 181 AIH--QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~--ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+. .-..+.++|+||+|+.++.. ...+ +..+....+.+|++++.|++.|..++
T Consensus 317 ~~~~~~~~~~~i~v~NK~DL~~~~~----~~~~----~~~~~~~~i~iSa~t~~Gl~~L~~~i 371 (454)
T COG0486 317 LIELLPKKKPIIVVLNKADLVSKIE----LESE----KLANGDAIISISAKTGEGLDALREAI 371 (454)
T ss_pred HHHhcccCCCEEEEEechhcccccc----cchh----hccCCCceEEEEecCccCHHHHHHHH
Confidence 122 12346799999999998754 1222 22223334558999999999888776
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=124.60 Aligned_cols=161 Identities=22% Similarity=0.319 Sum_probs=101.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|||||||+|+|+ +.+++++...++.+. ... ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~~----~~~---------~~~~------------------- 46 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTR----NRI---------RGIY------------------- 46 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCcee----ceE---------EEEE-------------------
Confidence 4679999999999999999999 556666665544310 000 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
...+.+++++||||+..+..................++.+++|+|+.......... +...+.+.+.+.++
T Consensus 47 -----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~-----~~~~~~~~~~~~ii 116 (168)
T cd04163 47 -----TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEF-----ILELLKKSKTPVIL 116 (168)
T ss_pred -----EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHH-----HHHHHHHhCCCEEE
Confidence 02246789999999887654332211111223356678999999998762211110 12233334578999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+||+|+....+ .+..+...+....+..+++ .|++.+.++++++..+
T Consensus 117 v~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 117 VLNKIDLVKDKE---DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred EEEchhccccHH---HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHH
Confidence 999999984322 2455566666666655666 7898999998887654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=129.80 Aligned_cols=182 Identities=21% Similarity=0.234 Sum_probs=116.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccchhhhhcC--CCCceeeeeeecCCCcee
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVERAMINEG--EGGALVEEWVELANGCIC 100 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d~~~~~~~--~~~~~~~~~~~l~~gcic 100 (257)
.+..++.|+|+||+|||||+.+|..+ ..|.+++|+.-||.+.. --|+..++.. ..++++.+. ++..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~---~srG-- 123 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS---PSRG-- 123 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec---CCCc--
Confidence 45569999999999999999999774 56999999999987622 1133333331 234444322 1111
Q ss_pred eccchhHHHHHHHHH--HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKHSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~~~~~~l~~~~--~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+.+.....+.+ ....++|+|||||+|..+........ +|.+++|.=+..+.....
T Consensus 124 --~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~-----------aDt~~~v~~pg~GD~~Q~-------- 182 (323)
T COG1703 124 --TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANM-----------ADTFLVVMIPGAGDDLQG-------- 182 (323)
T ss_pred --cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhh-----------cceEEEEecCCCCcHHHH--------
Confidence 1222333333322 23679999999999999876544322 477777777665544322
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh------C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI------N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~------~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.....++.+|++|+||.|.-..+. ....+...++.. + +..+++ .++..+.|+++|++++
T Consensus 183 -iK~GimEiaDi~vINKaD~~~A~~---a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai 249 (323)
T COG1703 183 -IKAGIMEIADIIVINKADRKGAEK---AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAI 249 (323)
T ss_pred -HHhhhhhhhheeeEeccChhhHHH---HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHH
Confidence 123457889999999999655432 234444444433 2 334566 6788889999998876
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-16 Score=141.15 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=96.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+|+|+||||||||+|+|..+ ++ .+++.|++|.......+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~----k~-~vs~~p~TT~~p~~Giv~--------------------------------- 202 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA----KP-KVADYPFTTLVPNLGVVR--------------------------------- 202 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC----cc-cccCCCCCccCcEEEEEE---------------------------------
Confidence 6999999999999999999953 33 567777763322111110
Q ss_pred HHHhcCC-CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 114 LVQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 114 ~~~~~~~-~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+ ..++|+||||+.++......+. ...+++..+++.+++|+|+..+. ....... .+...+.+ .
T Consensus 203 ----~~~~~~i~~vDtPGi~~~a~~~~~Lg-~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~---~l~~eL~~~~~~L~ 274 (390)
T PRK12298 203 ----VDDERSFVVADIPGLIEGASEGAGLG-IRFLKHLERCRVLLHLIDIAPIDGSDPVENAR---IIINELEKYSPKLA 274 (390)
T ss_pred ----eCCCcEEEEEeCCCccccccchhhHH-HHHHHHHHhCCEEEEEeccCcccccChHHHHH---HHHHHHHhhhhhhc
Confidence 112 2489999999987542211110 12234567889999999987321 1111100 01111122 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC-CEEEEeecCCcChhhhhcCccCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~-a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
..|.++|+||+|+.+.++. .+.+....+...+. ..+.+|++++.++++++..+...+.
T Consensus 275 ~kP~IlVlNKiDl~~~~el---~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEA---EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCEEEEEeCCccCChHHH---HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 4688999999999865432 22222222333322 2344899999999998877744433
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=124.10 Aligned_cols=168 Identities=16% Similarity=0.197 Sum_probs=101.5
Q ss_pred cccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCC
Q 025133 18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG 97 (257)
Q Consensus 18 ~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (257)
.++.-+..+.+..+.+.++|+|.+|+|||||+|+|... ..++.+...+|.+.... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~---~~~~~~~~~~~~t~~~~---------------~~~---- 61 (179)
T TIGR03598 4 VKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNR---KKLARTSKTPGRTQLIN---------------FFE---- 61 (179)
T ss_pred EeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC---CCcccccCCCCcceEEE---------------EEE----
Confidence 34444556677788889999999999999999999842 11233333333211100 000
Q ss_pred ceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccccceeeeeEEEEEeccchHHHHh
Q 025133 98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID 170 (257)
Q Consensus 98 cicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~ 170 (257)
.+.++.++||||+.... .+.... ...+.....++.+++|+|+.+.....+
T Consensus 62 ---------------------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ii~vvd~~~~~~~~~ 118 (179)
T TIGR03598 62 ---------------------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLI--EEYLEKRENLKGVVLLMDIRHPLKELD 118 (179)
T ss_pred ---------------------eCCcEEEEeCCCCccccCChhHHHHHHHHH--HHHHHhChhhcEEEEEecCCCCCCHHH
Confidence 01257899999975421 111111 122233345678999999986433322
Q ss_pred hhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChh
Q 025133 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 171 ~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~ 235 (257)
.. +...+.+.+.+.++++||+|+.++++....++.+++.++......+++ +|++++.|++
T Consensus 119 ~~-----~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 119 LE-----MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH-----HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 11 223344456788999999999876544345667777777654344555 8999988763
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=131.90 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=107.9
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
.....+|.+.++|+.|||||||+|.|..+ .+.+-..-|.+ .+.+.+.+ .+
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~----~~~~~d~LFAT-LdpttR~~-------------~l------------ 236 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGA----DVYVADQLFAT-LDPTTRRI-------------EL------------ 236 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhcc----Ceecccccccc-ccCceeEE-------------Ee------------
Confidence 34568999999999999999999999843 21211222332 22221111 11
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+..+++-||+|+.. |..+.+.| ...+.+...+|.+++|||++..... ... ......+..
T Consensus 237 -----------~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE~~~aDlllhVVDaSdp~~~-~~~---~~v~~vL~e 299 (411)
T COG2262 237 -----------GDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEEVKEADLLLHVVDASDPEIL-EKL---EAVEDVLAE 299 (411)
T ss_pred -----------CCCceEEEecCccCcccCChHHHHHH--HHHHHHhhcCCEEEEEeecCChhHH-HHH---HHHHHHHHH
Confidence 2245689999999765 67777776 4678889999999999999976221 111 112334444
Q ss_pred H---hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 185 I---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 185 l---~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+ ..|.++|+||+|++..+. ....+....| ..|++|+.++.|++.|...+..
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE-------ILAELERGSP-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred cCCCCCCEEEEEecccccCchh-------hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHH
Confidence 4 347899999999998753 2223333335 5788999999999988877643
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=128.10 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=113.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-ccchh-----hhhcCCCCceeeeeeecCCCceeec-
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-GVERA-----MINEGEGGALVEEWVELANGCICCT- 102 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-~~d~~-----~~~~~~~~~~~~~~~~l~~gcicc~- 102 (257)
+.+++|+|++|+||||++..+... ..|+++.++..|++.+. ..... .+.. ..+....-...++.++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~--~~v~~~~~l~p~~~~~~~~~ 79 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTA--REIMKKYGLGPNGALIASVD 79 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeH--HHHHHHcCCCCchHHHHHHH
Confidence 347899999999999999998753 55889999999988521 11100 0000 0000000112333344443
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH---hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~---~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
+...-...+.+.+. ..+.+++++||||..++..... .+. ..+.... .+.+++|+|+.......+..... +.
T Consensus 80 ~~~~~~~~l~~~l~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~--~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~--~l 153 (253)
T PRK13768 80 LLLTKADEIKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLV--ERLSGSS-KSVVVFLIDAVLAKTPSDFVSLL--LL 153 (253)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCCcHHHHHhhhHHHHHHH--HHHHhcC-CeEEEEEechHHhCCHHHHHHHH--HH
Confidence 11111122222232 4457999999999776543221 111 1111111 68999999997655443321100 01
Q ss_pred H--HHHHHhhcCEEEEeCCCCCCcCCCcchHHHHH------------------------HHHHHhCCCCEEE-EeecCCc
Q 025133 180 E--AIHQIAFADVVILNKVDLVSPERSGDSLDELE------------------------KEIHEINSLAHVI-RSVRCQV 232 (257)
Q Consensus 180 ~--~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~------------------------~~l~~~~~~a~i~-~s~~~~~ 232 (257)
. ...+...+.++|+||+|+.+..+..+....+. +.+++.++..+++ .|+..+.
T Consensus 154 ~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 154 ALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 1 11245678899999999998765322111111 2244556665666 8899999
Q ss_pred ChhhhhcCcc
Q 025133 233 DLSEVLNCRA 242 (257)
Q Consensus 233 ~~~~l~~~~~ 242 (257)
++++|++.+.
T Consensus 234 gl~~L~~~I~ 243 (253)
T PRK13768 234 GFDELYAAIQ 243 (253)
T ss_pred CHHHHHHHHH
Confidence 9999988763
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=123.02 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=115.3
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+-+.-.+++.|.||+|||||.|.++ |.+++.++....+ ++..+ -.+||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~T----Tr~~i-----------------lgi~t------- 116 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHT----TRHRI-----------------LGIIT------- 116 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccc----eeeee-----------------eEEEe-------
Confidence 4566689999999999999999999 8899999988775 22111 12333
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHH----hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH- 183 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~----~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~- 183 (257)
.++.++||.||||+..+..... .-..+........+|.++.|+|++.-..++.. .+...+.
T Consensus 117 ---------s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-----~vl~~l~~ 182 (379)
T KOG1423|consen 117 ---------SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-----RVLHMLEE 182 (379)
T ss_pred ---------cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-----HHHHHHHH
Confidence 5678899999999876543321 11123445667889999999999952222110 0111111
Q ss_pred HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHH------------HH---hCC-------------CCEEE-EeecCCcCh
Q 025133 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEI------------HE---INS-------------LAHVI-RSVRCQVDL 234 (257)
Q Consensus 184 ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l------------~~---~~~-------------~a~i~-~s~~~~~~~ 234 (257)
-...|.++|+||+|...+... +-.++..| ++ ..| +-++| +|+..|.|+
T Consensus 183 ys~ips~lvmnkid~~k~k~~---Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 183 YSKIPSILVMNKIDKLKQKRL---LLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred HhcCCceeeccchhcchhhhH---HhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 123578999999998865431 21121111 11 112 22355 899999999
Q ss_pred hhhhcCc----cCCCCCCCccccccCC
Q 025133 235 SEVLNCR----AYDATVNPIKLCSESS 257 (257)
Q Consensus 235 ~~l~~~~----~~~~~~~~~~~~~~~~ 257 (257)
+++..+. ...+-++|.++.||++
T Consensus 260 kdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 260 KDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred HHHHHHHHhcCCCCCCCCCcccccccC
Confidence 8877665 4446668888888764
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-15 Score=127.16 Aligned_cols=211 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcc-----cccc-hhhhhcCCCCceeeeeeecCCCceeec
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-----IGVE-RAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~-----~~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
+.++++++|..|||||||+.+|..+ ..+...-+|+-||.-. .++| +..+++.. ++..-....++|-+-|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkE--vMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKE--VMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHH--HHHHhCCCCCcchhhhH
Confidence 4567899999999999999999764 2233345666665420 1333 22222210 00011122233333332
Q ss_pred -c-chhHHHHHHHHHH-hcCCCCEEEEecCCCCCcHHHHHhc-ccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 103 -V-KHSLVQALEQLVQ-RKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 103 -~-~~~~~~~l~~~~~-~~~~~~~ilIDt~G~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
+ .-.+.+.+ +++. +...+++++|||||..+-..+...- .+-..++... ..+++||+|..+...+...+++....
T Consensus 96 NLF~tk~dqv~-~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 96 NLFATKFDQVI-ELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHH-HHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHH
Confidence 1 11222222 2332 3457899999999965533222100 0011222322 45899999999877766666555445
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------------------CCCEEE-EeecCCcChh
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN----------------------SLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------------------~~a~i~-~s~~~~~~~~ 235 (257)
..++-.-+.|.++++||+|+.+.+-..+++..++.+-..++ ...+.+ +|+.+|.|.+
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 56667778899999999999987654344443333322222 234455 8999999999
Q ss_pred hhhcCccCCC
Q 025133 236 EVLNCRAYDA 245 (257)
Q Consensus 236 ~l~~~~~~~~ 245 (257)
+++.++....
T Consensus 254 df~~av~~~v 263 (366)
T KOG1532|consen 254 DFFTAVDESV 263 (366)
T ss_pred HHHHHHHHHH
Confidence 9998875543
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-15 Score=130.93 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=94.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-|+++|+||||||||+|+|..+ ++. +.+.++++.......+ .+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a----~~~-va~ypfTT~~p~~G~v-------------~~------------------ 202 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAA----KPK-IADYPFTTLHPNLGVV-------------RV------------------ 202 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcC----CCc-cCCCCCceeCceEEEE-------------Ee------------------
Confidence 35899999999999999999853 222 4555554222111100 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
.....++++|+||+.+.......+. ...+++..+++.+++|+|++... ..+.. +...+.+ .
T Consensus 203 -----~~~~~~~i~D~PGli~ga~~~~gLg-~~flrhie~a~vlI~ViD~s~~~s~e~~~~------~~~EL~~~~~~L~ 270 (335)
T PRK12299 203 -----DDYKSFVIADIPGLIEGASEGAGLG-HRFLKHIERTRLLLHLVDIEAVDPVEDYKT------IRNELEKYSPELA 270 (335)
T ss_pred -----CCCcEEEEEeCCCccCCCCccccHH-HHHHHHhhhcCEEEEEEcCCCCCCHHHHHH------HHHHHHHhhhhcc
Confidence 1234589999999875432211111 12345566789999999998532 11111 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+.+.++. .........+.. +..-+.+|++++.++++++..+...
T Consensus 271 ~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~-~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEE--REKRAALELAAL-GGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred cCCeEEEEECcccCCchhH--HHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999865431 111222223322 2233448999999999998877433
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-15 Score=129.62 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=96.7
Q ss_pred EEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeec--cchh
Q 025133 37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCT--VKHS 106 (257)
Q Consensus 37 i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~~ 106 (257)
|+|++||||||+++.+.+. ..++++.+++-||+.+. .+| +..+.. ..++.+--...+++-+.|. +...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~--~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISV--EEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--H--HHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhh--hhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 6899999999999999874 56889999999999732 122 222211 0011111223344445554 3344
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcc-cccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+ .++.+.+... +.+|+++||||..+...+...+. +-..+....++ ++++++|+....+..+............-++
T Consensus 79 ~-d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~-~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~ 155 (238)
T PF03029_consen 79 I-DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRL-VVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL 155 (238)
T ss_dssp H-HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcce-EEEEEEecccccChhhHHHHHHHHHHHHhhC
Confidence 4 3333333323 45999999999765433222110 01223333333 8999999998877655543221112233557
Q ss_pred hhcCEEEEeCCCCCCcCCCcchH-----------------HHHHHHHHHh---CCCC-E-EEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSL-----------------DELEKEIHEI---NSLA-H-VIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l-----------------~~~~~~l~~~---~~~a-~-i~~s~~~~~~~~~l~~~~ 241 (257)
+.|.+.|+||+|++++. ....+ ..+...+.+. .... + +..|+..+.++.+|+..+
T Consensus 156 ~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 156 ELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp TSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred CCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 78999999999999832 00011 2222222221 1222 3 337888888998887654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=127.54 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=97.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|.+|+|||||+|+|++ .+ .++.+.++++.+.... ...+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~----~~-~~v~~~~~tT~d~~~~-------------~i~~~-------------- 234 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTG----AD-VYAADQLFATLDPTTR-------------RLDLP-------------- 234 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC----Cc-eeeccCCccccCCEEE-------------EEEeC--------------
Confidence 4568999999999999999999994 34 4555556653322111 11111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.+..+.|+||+|+.. |....+.+ ...+.....+|.+++|+|++........ . .+...+.++
T Consensus 235 ---------~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~~~~ADlil~VvD~s~~~~~~~~-~---~~~~~L~~l~~ 299 (351)
T TIGR03156 235 ---------DGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQI-E---AVEKVLEELGA 299 (351)
T ss_pred ---------CCceEEEEecCcccccCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCchHHHH-H---HHHHHHHHhcc
Confidence 234688999999843 55555543 2344456688999999999864322110 0 012234444
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+..+ +. . +...++ ..+.+|++++.|+++++..+
T Consensus 300 ~~~piIlV~NK~Dl~~~~~----v~---~-~~~~~~-~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEPR----IE---R-LEEGYP-EAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred CCCCEEEEEEeecCCChHh----HH---H-HHhCCC-CEEEEEccCCCCHHHHHHHH
Confidence 356799999999976432 21 1 111122 23568999999999988765
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=133.65 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=101.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
....++++|.+|+|||||+|+|+ +....++...+|++... + .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~~~----~---------~~~~~----------------- 217 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTRDS----I---------DTPFE----------------- 217 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceEEE----E---------EEEEE-----------------
Confidence 34579999999999999999999 44445666666652110 0 00000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.++||||+....... +.+.....+.....+|.+++|+|+.......+.. +.....+.+.
T Consensus 218 -------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-----i~~~~~~~~~ 285 (435)
T PRK00093 218 -------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLALEAGR 285 (435)
T ss_pred -------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 223568899999986544332 2111122234456789999999998765443321 2223334457
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++++||+|+.+.+. ...+...++.. .+.++++ .|++++.+++++++..
T Consensus 286 ~~ivv~NK~Dl~~~~~----~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 286 ALVIVVNKWDLVDEKT----MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred cEEEEEECccCCCHHH----HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 8899999999985533 34444444332 2345555 8999999999888764
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=112.36 Aligned_cols=152 Identities=21% Similarity=0.232 Sum_probs=90.5
Q ss_pred EEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHH
Q 025133 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115 (257)
Q Consensus 36 ~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~ 115 (257)
+++|.+|+|||||+++|+ +.+...+...++.+..... ....
T Consensus 1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~-------------~~~~---------------------- 41 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIY-------------GEAE---------------------- 41 (157)
T ss_pred CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCcee-------------EEEE----------------------
Confidence 478999999999999999 4444555555543111000 0000
Q ss_pred HhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEe
Q 025133 116 QRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (257)
Q Consensus 116 ~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlN 194 (257)
..+..+.++||||...... +...+. .........+|.+++|+|+......... .+...+.+...+.++|+|
T Consensus 42 --~~~~~~~i~DtpG~~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~n 113 (157)
T cd01894 42 --WGGREFILIDTGGIEPDDEGISKEIR-EQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVN 113 (157)
T ss_pred --ECCeEEEEEECCCCCCchhHHHHHHH-HHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEE
Confidence 1235688999999876543 111111 1112234568899999999753322111 022334455678899999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|+|+..... . ...+.+.+....+..|++.+.++++++..+
T Consensus 114 K~D~~~~~~----~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 114 KVDNIKEED----E---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred CcccCChHH----H---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 999987642 1 233333333223458999999999887654
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-14 Score=113.53 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=93.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+.. ........++.+. ... .....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~----~~~~~~~~~~~~~----~~~---------~~~~~------------------- 46 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE----ERVIVSDIAGTTR----DSI---------DVPFE------------------- 46 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc----cceeccCCCCCcc----Cce---------eeEEE-------------------
Confidence 45899999999999999999842 2233333333210 000 00000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+.++.++||||..+..... +.+.....+......+.+++|+|+......... .+.....+.+.+.
T Consensus 47 -----~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~~~ 116 (174)
T cd01895 47 -----YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-----RIAGLILEEGKAL 116 (174)
T ss_pred -----ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-----HHHHHHHhcCCCE
Confidence 123458899999976552211 111101112234567999999999865432211 0122233345788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++++||+|+.+..+ ...+.+.+.+++..+ ..+++ .|++.+.++++++...
T Consensus 117 iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 117 VIVVNKWDLVEKDS--KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred EEEEeccccCCccH--HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHH
Confidence 99999999987631 124455555554433 34555 7999999999887654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=119.78 Aligned_cols=187 Identities=19% Similarity=0.177 Sum_probs=102.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhcC--CCCceeeeeeecCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINEG--EGGALVEEWVELANGCICC 101 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~---~--d~~~~~~~--~~~~~~~~~~~l~~gcicc 101 (257)
...+++|+|++|||||||++.|... ..|.+++++..|+..... + ++..+... ..+..+ ..++.+|..-
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 109 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI---RSMPTRGHLG 109 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee---eecCcccccc
Confidence 5678999999999999999999763 458899999999765220 0 11111110 011111 1222221100
Q ss_pred ccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.........+ +.+. ..++|++||||+|..+...-. ...+|.++++.++...... .. +.
T Consensus 110 ~~~~~~~~~~-~~l~-~~g~D~viidT~G~~~~e~~i-----------~~~aD~i~vv~~~~~~~el-~~------~~-- 167 (300)
T TIGR00750 110 GLSQATRELI-LLLD-AAGYDVIIVETVGVGQSEVDI-----------ANMADTFVVVTIPGTGDDL-QG------IK-- 167 (300)
T ss_pred chhHHHHHHH-HHHH-hCCCCEEEEeCCCCchhhhHH-----------HHhhceEEEEecCCccHHH-HH------HH--
Confidence 0011112222 2222 568999999999987543211 1224667777655533221 11 11
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-----CCCCE-EEEeecCCcChhhhhcCcc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI-----NSLAH-VIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-----~~~a~-i~~s~~~~~~~~~l~~~~~ 242 (257)
-.....++++++||+|+...+........+...+..+ .+..+ +.+|+.++.|+++++..+.
T Consensus 168 ~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~ 234 (300)
T TIGR00750 168 AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIE 234 (300)
T ss_pred HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHH
Confidence 1235678999999999987542100001111111211 11223 4489999999999887763
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=134.20 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=93.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-|+++|+||||||||+|+|... +.. +.+.+++|...... .+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~a----kpk-IadypfTTl~P~lG-------------vv~------------------- 202 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAA----KPK-IADYPFTTLVPNLG-------------VVQ------------------- 202 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcC----Ccc-ccccCcccccceEE-------------EEE-------------------
Confidence 35899999999999999999853 222 35556653221110 001
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH------HHHhhhccCCChhHHH----
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL------FQIDKYRHLSSYPEAI---- 182 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~------~~~~~~~~~~~~~~~~---- 182 (257)
..+..++|+||||+.+.......+. ...+++..+++.+++|+|++... ..+..... .+....
T Consensus 203 -----~~~~~f~laDtPGliegas~g~gLg-~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~--EL~~y~~~l~ 274 (500)
T PRK12296 203 -----AGDTRFTVADVPGLIPGASEGKGLG-LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEA--ELAAYAPALD 274 (500)
T ss_pred -----ECCeEEEEEECCCCccccchhhHHH-HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHH--HHHHhhhccc
Confidence 1234688999999876433222111 12345667789999999997421 11111000 000011
Q ss_pred ------HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 183 ------HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 183 ------~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.....|.++|+||+|+.+..+ ..+.+...+++. . .+++ +|+.++.++++|+...
T Consensus 275 ~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l~~~-g-~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 275 GDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPELEAR-G-WPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred ccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHHHHc-C-CeEEEEECCCCCCHHHHHHHH
Confidence 112468899999999975432 123334444433 2 3455 8999999999887655
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-14 Score=111.06 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=86.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|... +. .+...++++...... ...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~----~~-~v~~~~~~t~~~~~~-------------~~~--------------------- 43 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA----KP-KIADYPFTTLVPNLG-------------VVR--------------------- 43 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC----Cc-cccCCCccccCCcce-------------EEE---------------------
Confidence 789999999999999999842 21 233333331110000 000
Q ss_pred HHhcCC-CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch---HHHHhhhccCCChhHHHHH-----H
Q 025133 115 VQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL---LFQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 115 ~~~~~~-~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~---~~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+ ..+.|+||||+.......+.+. ...+.....++.+++|+|+... ...... +...+.+ .
T Consensus 44 ---~~~~~~~~l~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~------~~~~l~~~~~~~~ 113 (170)
T cd01898 44 ---VDDGRSFVVADIPGLIEGASEGKGLG-HRFLRHIERTRLLLHVIDLSGDDDPVEDYKT------IRNELELYNPELL 113 (170)
T ss_pred ---cCCCCeEEEEecCcccCcccccCCch-HHHHHHHHhCCEEEEEEecCCCCCHHHHHHH------HHHHHHHhCcccc
Confidence 112 3678999999753221110000 1112233458899999999865 111111 1111221 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+.... ...+....++.....-+..|++.+.++++++..+
T Consensus 114 ~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 114 EKPRIVVLNKIDLLDEEEL---FELLKELLKELWGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred ccccEEEEEchhcCCchhh---HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHH
Confidence 4678999999999876542 2233333433222223448999999999887654
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=126.56 Aligned_cols=161 Identities=18% Similarity=0.312 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
..+|.++++|.+|+|||||+|+|+ +.++. +.+.++++.+.... ...+
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~-------------~i~l--------------- 241 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLR-------------RIDV--------------- 241 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceE-------------EEEe---------------
Confidence 467899999999999999999998 44444 55666653322111 0111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.....++|+||+|+.. |....+.+ ...+.....+|.+++|+|++........ . .+...+.++
T Consensus 242 --------~~~~~~~l~DTaG~~r~lp~~lve~f--~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~---~v~~iL~el~~ 307 (426)
T PRK11058 242 --------ADVGETVLADTVGFIRHLPHDLVAAF--KATLQETRQATLLLHVVDAADVRVQENI-E---AVNTVLEEIDA 307 (426)
T ss_pred --------CCCCeEEEEecCcccccCCHHHHHHH--HHHHHHhhcCCEEEEEEeCCCccHHHHH-H---HHHHHHHHhcc
Confidence 1112578999999743 55555543 2345566789999999999864321110 0 011223333
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+.+... ..+.. ...-.|. .+.+|++++.|+++++..+...
T Consensus 308 ~~~pvIiV~NKiDL~~~~~-----~~~~~-~~~~~~~-~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDFE-----PRIDR-DEENKPI-RVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred CCCCEEEEEEcccCCCchh-----HHHHH-HhcCCCc-eEEEeCCCCCCHHHHHHHHHHH
Confidence 357799999999975421 11111 1111121 2558999999999998877443
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=124.70 Aligned_cols=160 Identities=23% Similarity=0.234 Sum_probs=92.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-|+++|+||||||||+++|.... . .+.+.+.++...... ...+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~----~-~va~y~fTT~~p~ig-------------~v~~------------------ 201 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK----P-KIADYPFTTLVPNLG-------------VVRV------------------ 201 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC----c-cccCCCCCccCCEEE-------------EEEe------------------
Confidence 458999999999999999998532 1 234444432211100 0000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
....++.|+||||+.+.......+. ...+++..+++.+++|+|+.... ...+.... +...+.+ .
T Consensus 202 -----~~~~~~~i~D~PGli~~a~~~~gLg-~~flrhierad~ll~VvD~s~~~~~~~~e~l~~---l~~EL~~~~~~l~ 272 (329)
T TIGR02729 202 -----DDGRSFVIADIPGLIEGASEGAGLG-HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEI---IRNELKKYSPELA 272 (329)
T ss_pred -----CCceEEEEEeCCCcccCCcccccHH-HHHHHHHHhhCEEEEEEcCccccccCHHHHHHH---HHHHHHHhhhhhc
Confidence 1125688999999865432111110 12344566789999999998531 11111100 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+++. ...+.+.+.+.....-+.+|++.+.++++++..+
T Consensus 273 ~kp~IIV~NK~DL~~~~~----~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEE----LAELLKELKKALGKPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred cCCEEEEEeCccCCChHH----HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHH
Confidence 468899999999987543 3444444443333333448999999999988765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-14 Score=129.29 Aligned_cols=157 Identities=21% Similarity=0.199 Sum_probs=99.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|+ +.+.+++...+|.+. +. .. ....
T Consensus 2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t~--d~--~~---------~~~~--------------------- 43 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVTR--DR--KY---------GDAE--------------------- 43 (429)
T ss_pred EEEECCCCCCHHHHHHHHh----CCCcceecCCCCccc--Cc--eE---------EEEE---------------------
Confidence 7899999999999999999 445567777676421 11 00 0001
Q ss_pred HHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 115 VQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+..+.++||||+..... +.+.+. .........+|.+++|+|+.......+.. +...+.+.+.+.++|+
T Consensus 44 ---~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~~~~~piilVv 114 (429)
T TIGR03594 44 ---WGGREFILIDTGGIEEDDDGLDKQIR-EQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLRKSGKPVILVA 114 (429)
T ss_pred ---ECCeEEEEEECCCCCCcchhHHHHHH-HHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHhCCCEEEEE
Confidence 2234588999999754322 222111 22233456789999999998754443321 3344555677889999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
||+|+.+.+.. . ..+.++.-...+.+|+.++.+++++++.....+
T Consensus 115 NK~D~~~~~~~---~----~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 115 NKIDGKKEDAV---A----AEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ECccCCccccc---H----HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 99999875431 1 113333333345689999999999988775444
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-14 Score=129.66 Aligned_cols=161 Identities=24% Similarity=0.277 Sum_probs=99.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+|+|+. ....++...+|++... + .....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~----~~~~~~~~~~gtt~~~----~---------~~~~~------------------ 216 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLG----EERVIVSDIAGTTRDS----I---------DIPFE------------------ 216 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHC----CCeeecCCCCCceECc----E---------eEEEE------------------
Confidence 45689999999999999999994 3445555566652211 0 00011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||+....... +.+.....+.....+|.+++|+|+.......+.. +.....+...+
T Consensus 217 ------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-----~~~~~~~~~~~ 285 (429)
T TIGR03594 217 ------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-----IAGLILEAGKA 285 (429)
T ss_pred ------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCc
Confidence 123358899999986543221 2221122233456789999999998765443321 22233344578
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++|+||+|++... ...+.+...++... +.++++ .|++++.++++++..+
T Consensus 286 iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i 339 (429)
T TIGR03594 286 LVIVVNKWDLVKDE---KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAI 339 (429)
T ss_pred EEEEEECcccCCCH---HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHH
Confidence 99999999998321 22455555555433 335555 8999999999888765
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-14 Score=112.48 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.+++|+||||.......... ....++.+++|+|+.......... ......+...+.++++||+|+.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIR--------GLSVSDGAILVVDANEGVQPQTRE-----HLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCCcHHHHH-----HHHHHHHCCCCeEEEEECCCCc
Confidence 467899999997654332211 123688999999998644321110 1223334467889999999999
Q ss_pred CcCCCcchHHHHHHHHHHhC------------CCCEEE-EeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEIN------------SLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~------------~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
.+++.....+.+.+.++... ...+++ .|++.+.|+++++......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 128 GEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred chhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 85543334455555555432 245565 7999999999988776433
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=129.91 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++|.++|+|.+|+|||||+|+|+ +.+.+++...+|.+. + .+.. ...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gvT~--d--~~~~---------~~~----------------- 82 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGVTR--D--RVSY---------DAE----------------- 82 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCCCE--e--eEEE---------EEE-----------------
Confidence 45889999999999999999999 444466666666411 1 1100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||+... ..+.+.+. .........+|.+++|+|+.......+.. +...+.....|.
T Consensus 83 -------~~~~~~~l~DT~G~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvD~~~~~s~~~~~-----i~~~l~~~~~pi 149 (472)
T PRK03003 83 -------WNGRRFTVVDTGGWEPDAKGLQASVA-EQAEVAMRTADAVLFVVDATVGATATDEA-----VARVLRRSGKPV 149 (472)
T ss_pred -------ECCcEEEEEeCCCcCCcchhHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence 22345789999997632 22221111 11122345689999999998754332211 233344456789
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
++|+||+|+...+. ... . +....-...+.+|+.++.|+++++..+....
T Consensus 150 ilV~NK~Dl~~~~~---~~~---~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 150 ILAANKVDDERGEA---DAA---A-LWSLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred EEEEECccCCccch---hhH---H-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 99999999865321 111 1 1122222346699999999999988775443
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-14 Score=120.06 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=92.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+...|.++|.|+||+|||||+++|..+++. |...-|.+ -++. + |.+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpE----vA~YPFTT-K~i~------------v--------Ghf--------- 210 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPE----VAPYPFTT-KGIH------------V--------GHF--------- 210 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCc----cCCCCccc-ccee------------E--------eee---------
Confidence 457889999999999999999999965432 32323322 1111 0 000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
......+.+|||||+- .|....+.+..+..++-..-.+.|+|++|++....+.-+. +..-+.+....+..
T Consensus 211 --------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~-Q~~L~~eIk~~f~~ 281 (346)
T COG1084 211 --------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEE-QISLLEEIKELFKA 281 (346)
T ss_pred --------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHH-HHHHHHHHHHhcCC
Confidence 0223468899999954 4665554443233332233456899999998654331110 00002222233445
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhh
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSE 236 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~ 236 (257)
+.++|+||+|....+. ++++...+....-.-....++..+.+.+.
T Consensus 282 p~v~V~nK~D~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 282 PIVVVINKIDIADEEK----LEEIEASVLEEGGEEPLKISATKGCGLDK 326 (346)
T ss_pred CeEEEEecccccchhH----HHHHHHHHHhhccccccceeeeehhhHHH
Confidence 7899999999997754 56666655544333233455555555543
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-14 Score=126.89 Aligned_cols=157 Identities=24% Similarity=0.254 Sum_probs=90.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+++|+||||||||+|+|.++. .. +.+.++++....... ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak----~k-Ia~ypfTTl~PnlG~-------------v~~------------------- 202 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK----PK-IANYHFTTLVPNLGV-------------VET------------------- 202 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC----Cc-cccCCcceeceEEEE-------------EEE-------------------
Confidence 79999999999999999999542 22 344455422111000 000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch--HHHHhhhccCCChhHHHH-----HHh
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL--LFQIDKYRHLSSYPEAIH-----QIA 186 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~--~~~~~~~~~~~~~~~~~~-----ql~ 186 (257)
..+..++|+|+||+.+.......+. ...+++..+++.+++|+|++.. ......... +...+. ...
T Consensus 203 ----~~~~~~~laD~PGliega~~~~gLg-~~fLrhier~~llI~VID~s~~~~~dp~e~~~~---i~~EL~~y~~~L~~ 274 (424)
T PRK12297 203 ----DDGRSFVMADIPGLIEGASEGVGLG-HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK---INKELKLYNPRLLE 274 (424)
T ss_pred ----eCCceEEEEECCCCcccccccchHH-HHHHHHHhhCCEEEEEEeCCccccCChHHHHHH---HHHHHhhhchhccC
Confidence 1135689999999875332211111 2234566788999999999643 111111000 111111 135
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.|.++|+||+|+.... +.+....+.+. ..-+.+|+.++.++++++..+.
T Consensus 275 kP~IVV~NK~DL~~~~------e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 275 RPQIVVANKMDLPEAE------ENLEEFKEKLG-PKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred CcEEEEEeCCCCcCCH------HHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHH
Confidence 6889999999974321 22233222222 2233489999999999887764
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-14 Score=129.56 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=96.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+.++++|.+|+|||||+|+|+. .+..+++..+|++... + .....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~----~~~~~~s~~~gtT~d~----~---------~~~~~----------------- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAG----EERSVVDDVAGTTVDP----V---------DSLIE----------------- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC----CCcccccCCCCccCCc----c---------eEEEE-----------------
Confidence 457899999999999999999994 4445566667752211 1 00111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHH---HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPL---ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~---~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+...... .+.+...........++++++|+|+.......+.. +...+.....
T Consensus 256 -------~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-----~~~~~~~~~~ 323 (472)
T PRK03003 256 -------LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-----VLSMVIEAGR 323 (472)
T ss_pred -------ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 12344679999997532111 11110001112345789999999998654432211 1222233356
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+.+........+...+... .+++++ +|++++.++++++....
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~~SAk~g~gv~~lf~~i~ 378 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQV-PWAPRVNISAKTGRAVDKLVPALE 378 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccC-CCCCEEEEECCCCCCHHHHHHHHH
Confidence 7899999999986432111112222223222 345555 89999999999988764
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=106.47 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=69.7
Q ss_pred EEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCC
Q 025133 125 LLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 125 lIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
+||||| +.+...+...+ +.....+|.|++|.|+......+. +.+...+..+.+=|+||+|+.+.+
T Consensus 40 ~IDTPGEyiE~~~~y~aL-----i~ta~dad~V~ll~dat~~~~~~p--------P~fa~~f~~pvIGVITK~Dl~~~~- 105 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHAL-----IVTAQDADVVLLLQDATEPRSVFP--------PGFASMFNKPVIGVITKIDLPSDD- 105 (143)
T ss_pred EEECChhheeCHHHHHHH-----HHHHhhCCEEEEEecCCCCCccCC--------chhhcccCCCEEEEEECccCccch-
Confidence 799999 44444443322 234568899999999986543211 233344566778899999999433
Q ss_pred CcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 204 ~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..++..+++|+.-.-.-.+.+|+.++.|+++|.+.+
T Consensus 106 --~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 106 --ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred --hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 247888888887665533348999999999998654
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=108.10 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~~ 199 (257)
..+.++||||....... .......+|.+++|+|+.......... ......+... +.++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~~~--------~~~~~~~ad~ii~V~d~~~~~~~~~~~-----~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKN--------MLAGAGGIDLVLLVVAADEGIMPQTRE-----HLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHH--------HHhhhhcCCEEEEEEECCCCccHhHHH-----HHHHHHHhCCCcEEEEEECcccc
Confidence 45779999997432111 112244689999999997522111100 1112333444 778999999998
Q ss_pred CcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+........+++.+.++... ...+++ .|++.+.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 118 DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence 65321122345555555421 223444 8999999999887653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.08 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=97.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|.++++|.+|+|||||+|+|+ +.+.+++...+|.+.+. .. ....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~t~d~----~~---------~~~~------------------- 45 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGVTRDR----IY---------GEAE------------------- 45 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCCcccc----eE---------EEEE-------------------
Confidence 679999999999999999999 45556666666641111 00 0011
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+..+.++||||+..... +...+. .........+|.+++|+|+.......+.. +...+.....+.++
T Consensus 46 -----~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~vvd~~~~~~~~~~~-----~~~~l~~~~~piil 114 (435)
T PRK00093 46 -----WLGREFILIDTGGIEPDDDGFEKQIR-EQAELAIEEADVILFVVDGRAGLTPADEE-----IAKILRKSNKPVIL 114 (435)
T ss_pred -----ECCcEEEEEECCCCCCcchhHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCcEEE
Confidence 2235688999999875222 211111 11223345789999999998754333221 23344555778999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
|+||+|+.+.++ .... +..+.....+.+|+.++.|++++++.+..
T Consensus 115 v~NK~D~~~~~~------~~~~-~~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 115 VVNKVDGPDEEA------DAYE-FYSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEECccCccchh------hHHH-HHhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 999999765321 1122 22233222456899999999999887754
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=107.97 Aligned_cols=148 Identities=23% Similarity=0.269 Sum_probs=89.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.+++.|++|+|||||+++|. +.+.+...+.++.+..... ....
T Consensus 3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~-------------~~~~-------------------- 45 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIE-------------ESID-------------------- 45 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEE-------------EEEE--------------------
Confidence 47899999999999999998 4444555555553111000 0000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-HHhhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-ql~~~~viv 192 (257)
..+..+.++||||..+.....+............+++.+++|+|+........ ..... ....+.++|
T Consensus 46 ----~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~--------~~~~~~~~~~~vi~v 113 (157)
T cd04164 46 ----IGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEED--------LEILELPADKPIIVV 113 (157)
T ss_pred ----eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHH--------HHHHHhhcCCCEEEE
Confidence 12346789999997654332211111122234457899999999996332211 11222 345688999
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+||+|+.+.... .. .....+++ .|+..+.++.+++..+
T Consensus 114 ~nK~D~~~~~~~----------~~-~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 114 LNKSDLLPDSEL----------LS-LLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred EEchhcCCcccc----------cc-ccCCCceEEEECCCCCCHHHHHHHH
Confidence 999999876531 11 22233444 8899999999887764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=127.69 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=97.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+ +.+.+++.+.+|++.+... ....
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~-------------~~i~------------------- 259 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIE-------------EHIN------------------- 259 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEE-------------EEEE-------------------
Confidence 468999999999999999999 4455667777775322111 1111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-HhhcCEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVV 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l~~~~vi 191 (257)
..+..+.++||||+.++....+.+.+...+.....+|.+++|+|++......+ ...+.+ ...+.++
T Consensus 260 -----~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~--------~~~l~~~~~~piii 326 (449)
T PRK05291 260 -----LDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED--------DEILEELKDKPVIV 326 (449)
T ss_pred -----ECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH--------HHHHHhcCCCCcEE
Confidence 12345789999998876655544333334445677899999999976432211 011111 2457899
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
|+||+|+.+.... . .......+.+|++++.|++++++.+..
T Consensus 327 V~NK~DL~~~~~~----~-------~~~~~~~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 327 VLNKADLTGEIDL----E-------EENGKPVIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred EEEhhhccccchh----h-------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence 9999999865321 1 122222345899999999998888743
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=134.33 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+-++++|.+|+|||||+|+|+ +.+..++...+|++.+... ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~-------------~~~~----------------- 494 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVD-------------EIVE----------------- 494 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcce-------------eEEE-----------------
Confidence 45789999999999999999999 4455566667775321110 0111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.|+||||+....... +.+...........++.+++|+|+.......+.. +.........
T Consensus 495 -------~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-----i~~~~~~~~~ 562 (712)
T PRK09518 495 -------IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-----VMSMAVDAGR 562 (712)
T ss_pred -------ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCC
Confidence 123457899999976432111 1111001122345689999999998764432211 1222333467
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
|.++|+||+|+.+.+. .+.+.+.+... .++++++ +|++++.|+++++.....
T Consensus 563 piIiV~NK~DL~~~~~----~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 563 ALVLVFNKWDLMDEFR----RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred CEEEEEEchhcCChhH----HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999987533 23344334332 2455544 899999999999887633
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-14 Score=112.52 Aligned_cols=117 Identities=24% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-----HHHhhhccCC-ChhHHHH------HHhh
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHLS-SYPEAIH------QIAF 187 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-----~~~~~~~~~~-~~~~~~~------ql~~ 187 (257)
+..+.|+||||+.+.....+.+. ...+.....++.+++|+|+.... .......... ....... ....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLG-NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAK 121 (176)
T ss_pred CCeEEEEeccccchhhhcCCCcc-HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhC
Confidence 45678999999854322111110 01122344589999999998652 1111100000 0000001 1357
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEE-EEeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
|.++|+||+|+.+... ................+ ..|++.+.++++++...
T Consensus 122 p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 122 PVIYVLNKIDLDDAEE----LEEELVRELALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred CeEEEEEchhcCchhH----HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 8999999999987643 22221111222233334 48999999999988754
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=107.11 Aligned_cols=112 Identities=22% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
..++.++||||+........... .........++.+++++|+.......... +.....+...+.++|+||+|+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~-~~~~~~~~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGRERE-ELARRVLERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEECCCCCccccchhhHH-HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence 46789999999776533221100 00111234578999999999765543321 1223344567889999999999
Q ss_pred CcCCCcchHHHH---HHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDEL---EKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~---~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+. ... ........+..+++ .|+..+.++.+++...
T Consensus 118 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 118 PEEEE----EELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred ChhhH----HHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 87542 222 22233445666676 7899899998887654
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=131.56 Aligned_cols=161 Identities=24% Similarity=0.218 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++|+|.+|+|||||+|+|+ +.+.+++...+|.+. + .+.. ..+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT~--d--~~~~---------~~~---------------- 319 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVTR--D--RVSY---------DAE---------------- 319 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCeeE--E--EEEE---------EEE----------------
Confidence 345789999999999999999999 556677777777521 1 1100 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||+.... .+...+. .........+|.+++|+|+.......+.. +...+.....|
T Consensus 320 --------~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~Lr~~~~p 385 (712)
T PRK09518 320 --------WAGTDFKLVDTGGWEADVEGIDSAIA-SQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRMLRRAGKP 385 (712)
T ss_pred --------ECCEEEEEEeCCCcCCCCccHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCC
Confidence 234568899999976421 1111111 12223345789999999998654433321 23344555678
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
.++|+||+|+..... ..... ....-...+.+|+.++.|++++++.+...
T Consensus 386 vIlV~NK~D~~~~~~------~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 386 VVLAVNKIDDQASEY------DAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred EEEEEECcccccchh------hHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 999999999875421 11121 12222334668999999999998876543
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=111.92 Aligned_cols=158 Identities=21% Similarity=0.351 Sum_probs=89.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
-..+.++|+|++|+|||||+|.|+.. .. ...+.++.+..... . ...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~------------~-~~~~--------------- 85 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTT------------R-RLRL--------------- 85 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceecccee------------E-EEEe---------------
Confidence 44689999999999999999999853 11 11122221110000 0 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA- 186 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~- 186 (257)
.....+.|+||||+.. +....+.+ ...+.....+|.+++|+|+.......+.. .+...+.++.
T Consensus 86 --------~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~d~ii~v~D~~~~~~~~~~~----~~~~~l~~~~~ 151 (204)
T cd01878 86 --------PDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEEVAEADLLLHVVDASDPDYEEQIE----TVEKVLKELGA 151 (204)
T ss_pred --------cCCceEEEeCCCccccCCCHHHHHHH--HHHHHHHhcCCeEEEEEECCCCChhhHHH----HHHHHHHHcCc
Confidence 1223688999999754 22222222 11223345689999999998543221110 0223344443
Q ss_pred --hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 --~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+.++|+||+|+..... .. ......+ ...+..|++++.|+++++..+.
T Consensus 152 ~~~~viiV~NK~Dl~~~~~----~~---~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEE----LE---ERLEAGR-PDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred CCCCEEEEEEccccCChHH----HH---HHhhcCC-CceEEEEcCCCCCHHHHHHHHH
Confidence 46699999999987543 11 2233222 2234589999999999887653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=108.05 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=94.6
Q ss_pred cCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 26 ENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 26 ~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
+......+-++++|.+|+|||||+++|+... .++.+...+|.+..+. ..
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~---------------~~------------- 66 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRK---NLARTSKTPGRTQLIN---------------FF------------- 66 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---CcccccCCCCceeEEE---------------EE-------------
Confidence 3444567789999999999999999999521 1233333344211100 00
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCc---HHHHHh--cccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANP---APLASV--LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~---~~~~~~--~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+.++.|+||||+... ....+. ......+.....++.+++|+|+.......+.. +..
T Consensus 67 ------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----i~~ 129 (196)
T PRK00454 67 ------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ-----MIE 129 (196)
T ss_pred ------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH-----HHH
Confidence 01245889999996431 111100 00122333444567888999977533222110 122
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEE-EEeecCCcChhhhhcCc
Q 025133 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
.+...+.+.++++||+|+.+..+.....+.+...+... ..++ ..|+..+.++++++..+
T Consensus 130 ~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 130 WLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DDEVILFSSLKKQGIDELRAAI 189 (196)
T ss_pred HHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CCceEEEEcCCCCCHHHHHHHH
Confidence 33444567789999999987654222233344444433 2334 48999999999988765
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=104.88 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.++.++||||.......... ....+|.+++|+|+.......... ....+.+.+.|.++|+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~--------~~~~~d~il~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRAR--------GASLTDIAILVVAADDGVMPQTIE-----AIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHH--------HHhhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEEceecc
Confidence 467899999997543332221 123578999999998643211110 1223445667889999999987
Q ss_pred CcCCCcchHHHHHHHHHH--------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHE--------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~--------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ..+...++. .....+++ .|+..+.|+.+++..+
T Consensus 116 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 116 NANP-----ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred cccH-----HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHH
Confidence 5421 222222221 11223455 7999999999987765
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-13 Score=118.71 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC---CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH---GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~---~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..++-+.++||||||||||+|+|.++++ .+....+..+.|+ +..
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~-v~y-------------------------------- 240 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT-VNY-------------------------------- 240 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccce-eec--------------------------------
Confidence 3455689999999999999999997644 1122222222232 100
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q 184 (257)
...-++-+.|.||+.+....-..+. ...++++.+++.++||+|.+.+.. ++.....+..-.+.+.+
T Consensus 241 -----------ddf~q~tVADiPGiI~GAh~nkGlG-~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 241 -----------DDFSQITVADIPGIIEGAHMNKGLG-YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred -----------cccceeEeccCccccccccccCccc-HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 1112367999999988766544333 345788899999999999987621 11111000000112211
Q ss_pred --HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 185 --IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 185 --l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
...|.++|.||+|+...++ ..+.++...++ ..+.+.+|++.+.++.+++...
T Consensus 309 ~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq---~~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 309 GLADRPALIVANKIDLPEAEK--NLLSSLAKRLQ---NPHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred hhccCceEEEEeccCchhHHH--HHHHHHHHHcC---CCcEEEeeeccccchHHHHHHH
Confidence 2457899999999864432 11233433332 2234558999999999988764
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-13 Score=122.22 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=105.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-++|+|+||+|||||+|+|. ...+++++..+|++ ++ .++...++
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GTT----RD---------aiea~v~~------------------ 313 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGTT----RD---------AIEAQVTV------------------ 313 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCcc----hh---------hheeEeec------------------
Confidence 568999999999999999999 56779999999972 22 22222222
Q ss_pred HHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHH-------
Q 025133 113 QLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAI------- 182 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~------- 182 (257)
+++.+.|+||.|+.+ .....+.+.+++..+...+.|++++|+||.... .... +...+
T Consensus 314 ------~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~-------i~~~l~~~~~g~ 380 (531)
T KOG1191|consen 314 ------NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLK-------IARILETEGVGL 380 (531)
T ss_pred ------CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchH-------HHHHHHHhccce
Confidence 356788999999987 555666666677777889999999999994322 2111 11111
Q ss_pred -----HHHhhcCEEEEeCCCCCCcC-CCcchHHHHHHHHH-HhCCCCEEE--EeecCCcChhhhhcCccC
Q 025133 183 -----HQIAFADVVILNKVDLVSPE-RSGDSLDELEKEIH-EINSLAHVI--RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 183 -----~ql~~~~vivlNK~D~~~~~-~~~~~l~~~~~~l~-~~~~~a~i~--~s~~~~~~~~~l~~~~~~ 243 (257)
...+.+.+++.||+|+.+.- +..+. ...+.. ...+.-+++ +|..++.+++.|..++.-
T Consensus 381 ~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~---~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 381 VVIVNKMEKQRIILVANKSDLVSKIPEMTKI---PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEeccccccceEEEechhhccCccccccCC---ceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 11345788899999999872 21110 111111 122233333 688889999988877643
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-13 Score=104.82 Aligned_cols=108 Identities=21% Similarity=0.209 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHH--HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.++.++||||....... ...+. ...+.. ..++.+++|+|+........ ....+.+...+.++|+||+|+
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~-~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVA-RDFLLG-EKPDLIVNVVDATNLERNLY-------LTLQLLELGLPVVVALNMIDE 113 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHH-HHHhcC-CCCcEEEEEeeCCcchhHHH-------HHHHHHHcCCCEEEEEehhhh
Confidence 46889999997543211 00010 111111 46899999999987433211 111223446788999999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+...... ......+..+ ..-+.+|+..+.++.+++...
T Consensus 114 ~~~~~~~~---~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 114 AEKRGIKI---DLDKLSELLG-VPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred cccccchh---hHHHHHHhhC-CCeEEEEccCCCCHHHHHHHH
Confidence 87654322 2222222222 222448999999999887654
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=102.43 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=66.5
Q ss_pred CEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeC
Q 025133 122 DHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK 195 (257)
.+.++||||+... ....... ....+.....++.+++++|........... +...+...+.+.++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKL-IEEYLENRENLKGVVLLIDSRHGPTEIDLE-----MLDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHH-HHHHHHhChhhhEEEEEEEcCcCCCHhHHH-----HHHHHHHcCCCEEEEEEc
Confidence 5789999997642 1111111 112233334567889999987543221110 233445556678999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+.+..+.......+...++...+..+++ .|++.+.++.+++..+
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHH
Confidence 999876543233344444444223444554 7899999998887654
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-13 Score=105.76 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||........... ...++.+++|+|+........... .+.....+ ...|.++++||+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~v~vvd~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKY--------YAECHAIIYVIDSTDRERFEESKS---ALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECchHHHHHHHHH---HHHHHHhChhhcCCCEEEEEEcc
Confidence 4568899999976543333211 235689999999986432211100 01111111 246889999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh----C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI----N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~----~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ...+...++.. . ...+++ .|++++.|+++++..+
T Consensus 118 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 118 DLPDALS----VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccccCCC----HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 9876533 34445544432 1 223455 7999999999987654
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=119.36 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCEEEEecCCCCCcHHH-HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh--cCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--~~vivlNK~ 196 (257)
..+++||||||+..+..- +...+. .....+|.|++|+|+.......+.. +...+.+.+. |.++|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEcc
Confidence 478999999999876322 222221 2466789999999998754433321 2334445543 888999999
Q ss_pred CCCCcCCCcchHHHHHHHHH-----HhCCCCEEE-EeecCCcChhhhhcCccCCCC
Q 025133 197 DLVSPERSGDSLDELEKEIH-----EINSLAHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~-----~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
|+.+.++ ...+.+...++ ...+...|+ +|++.+.+++.+++.+..+..
T Consensus 300 Dl~dree--ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 300 DQQDRNS--DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred cCCCccc--chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 9975332 12344444432 223466677 899999999999988866544
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-13 Score=108.46 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.++||||... +.. ..+.....+|.+++|+|+.......... ..........+.++++||+|+.
T Consensus 67 ~~~~~i~DtpG~~~---~~~-----~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHAS---LIR-----TIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHH---HHH-----HHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 56789999999732 221 1122334578999999998753322110 1112222355778999999998
Q ss_pred CcCCCcchHHHHHHHHHHh-----CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 200 SPERSGDSLDELEKEIHEI-----NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~-----~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..++.....+.+.+.++.. ....+++ +|++++.|+++|++.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 134 PEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 6543323344454444322 2334555 89999999999988763
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=104.59 Aligned_cols=157 Identities=23% Similarity=0.234 Sum_probs=83.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|.++++|.+|+|||||+|+|.... .. +...++.+...... ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~----~~-~~~~~~~t~~~~~~-------------~~-------------------- 42 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK----PE-VAPYPFTTKSLFVG-------------HF-------------------- 42 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----Cc-cCCCCCcccceeEE-------------EE--------------------
Confidence 678999999999999999998531 11 11122211110000 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHH-hccccccccc-ceeeeeEEEEEeccchHH-HHhhhccCCChhHHHHHH--hh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLAS-VLWLDDQLES-AVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQI--AF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~-~~~~~~~~~~-~~~~~~vi~vvDa~~~~~-~~~~~~~~~~~~~~~~ql--~~ 187 (257)
...+..+.|+||||..+...... .+. ...+.. ....+.+++|+|+..... ...... .+...+.+. ..
T Consensus 43 ----~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~---~~~~~l~~~~~~~ 114 (168)
T cd01897 43 ----DYKYLRWQVIDTPGLLDRPLEERNTIE-MQAITALAHLRAAVLFLFDPSETCGYSLEEQL---SLFEEIKPLFKNK 114 (168)
T ss_pred ----ccCceEEEEEECCCcCCccccCCchHH-HHHHHHHHhccCcEEEEEeCCcccccchHHHH---HHHHHHHhhcCcC
Confidence 01235688999999743110000 000 000000 122478999999975321 111100 012222233 56
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+ +....... +.. ..+++ .|++++.|+++++..+
T Consensus 115 pvilv~NK~Dl~~~~~----~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 115 PVIVVLNKIDLLTFED----LSEIEEEE-ELE-GEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred CeEEEEEccccCchhh----HHHHHHhh-hhc-cCceEEEEecccCCHHHHHHHH
Confidence 7899999999987543 22222322 222 23444 8999999999998754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-13 Score=99.59 Aligned_cols=114 Identities=28% Similarity=0.277 Sum_probs=66.9
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++|.|++|+|||||+|+|++ .+.+.+...++.+.... .....
T Consensus 2 V~iiG~~~~GKSTlin~l~~----~~~~~~~~~~~~T~~~~-------------~~~~~--------------------- 43 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG----KKLAKVSNIPGTTRDPV-------------YGQFE--------------------- 43 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT----STSSEESSSTTSSSSEE-------------EEEEE---------------------
T ss_pred EEEECCCCCCHHHHHHHHhc----cccccccccccceeeee-------------eeeee---------------------
Confidence 78999999999999999994 33445665555421110 00111
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHh-cccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+..+.|+||||+......... -.....++....++.+++|+|+.......... +...++ -..+.++|+
T Consensus 44 ---~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~-----~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 44 ---YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKN-----ILRELK-NKKPIILVL 114 (116)
T ss_dssp ---ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHH-----HHHHHH-TTSEEEEEE
T ss_pred ---eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHh-cCCCEEEEE
Confidence 12345689999998875332210 01122344556789999999988732211110 112222 345778899
Q ss_pred eC
Q 025133 194 NK 195 (257)
Q Consensus 194 NK 195 (257)
||
T Consensus 115 NK 116 (116)
T PF01926_consen 115 NK 116 (116)
T ss_dssp ES
T ss_pred cC
Confidence 98
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-13 Score=115.69 Aligned_cols=162 Identities=23% Similarity=0.245 Sum_probs=99.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
+.++|+||+||||||+.+..+++. |....|.+ +.-. -|-+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPK----IadYpFTT-L~Pn--------------------LGvV~~------------- 203 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPK----IADYPFTT-LVPN--------------------LGVVRV------------- 203 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCc----ccCCcccc-ccCc--------------------ccEEEe-------------
Confidence 789999999999999999976442 23333322 1000 000000
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHH--HHHhhcCE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAI--HQIAFADV 190 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~--~ql~~~~v 190 (257)
..+..+++-|-||+.+....-.-+. .+.+++..+..++++|+|.+.... +.........-...+ .-...+.+
T Consensus 204 ---~~~~sfv~ADIPGLIEGAs~G~GLG-~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~i 279 (369)
T COG0536 204 ---DGGESFVVADIPGLIEGASEGVGLG-LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRI 279 (369)
T ss_pred ---cCCCcEEEecCcccccccccCCCcc-HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceE
Confidence 1245689999999987655433332 345778889999999999985432 111110000000111 22356889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+||+|+...++ .++.+.+.+.+...+...+ +|+.++.++++|+...
T Consensus 280 vv~NKiD~~~~~e---~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 280 VVLNKIDLPLDEE---ELEELKKALAEALGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred EEEeccCCCcCHH---HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHH
Confidence 9999999665542 3677777777655544443 8999999998877654
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=102.69 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=64.7
Q ss_pred EEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-HHhhcCEEEEeCCCCCCcC
Q 025133 125 LLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 125 lIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-ql~~~~vivlNK~D~~~~~ 202 (257)
++||||..... .+...+ ......+|.+++|+|+......... .... ....+.++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~-----~~~~~~ad~il~v~d~~~~~s~~~~--------~~~~~~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHAL-----ITTLQDVDMLIYVHGANDPESRLPA--------GLLDIGVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCHHHHHHH-----HHHHhcCCEEEEEEeCCCcccccCH--------HHHhccCCCCeEEEEEccccCccc
Confidence 69999965432 222211 1224578999999999865432111 1111 1234678999999986532
Q ss_pred CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 203 RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
.+.+..++++.....+++ +|++++.++++++......
T Consensus 108 -----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 -----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred -----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 456667676665444565 8999999999999876443
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=100.28 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcC
Q 025133 124 ILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 124 ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~ 202 (257)
.++||||..... .+... .......+|.+++|+|+.+...... .........|.++|+||+|+.+..
T Consensus 38 ~~iDt~G~~~~~~~~~~~-----~~~~~~~ad~vilv~d~~~~~s~~~--------~~~~~~~~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSA-----LIVTAADADVIALVQSATDPESRFP--------PGFASIFVKPVIGLVTKIDLAEAD 104 (142)
T ss_pred eeecCchhhhhhHHHHHH-----HHHHhhcCCEEEEEecCCCCCcCCC--------hhHHHhccCCeEEEEEeeccCCcc
Confidence 488999963211 11111 1122457899999999976554321 112222345889999999987543
Q ss_pred CCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
. ..+...+.++..+...-+..|++++.++++++..+
T Consensus 105 ~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 105 V---DIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred c---CHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 2 24455555555433222348999999999988654
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=97.79 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=63.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
..+.++||||............ ..........|.++.|+|+.......... +.....+ ..|.++++||+|+..
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~-~~~~~~i~~~d~~~~v~~~~~~~~~~~~~-----~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYY-RAVESSLRVFDIVILVLDVEEILEKQTKE-----IIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEECCCcccchHHHHHHH-hhhhEEEEEEEEeeeehhhhhHhHHHHHH-----HHHhccc-CCcEEEEEEcccCCc
Confidence 4577999999655444332211 22223344566677767766544221111 1111122 568899999999987
Q ss_pred cCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.. ........+...+....+..|+..+.++.+++..+
T Consensus 123 ~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 123 AK----LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ch----hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 53 13445555555544444458999999999887653
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=125.74 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=93.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|... +. .+.+-+|.++..... ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~----~~-~vgn~pGvTve~k~g-------------~~~------------------- 46 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGA----RQ-RVGNWAGVTVERKEG-------------QFS------------------- 46 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC----CC-ccCCCCCceEeeEEE-------------EEE-------------------
Confidence 46899999999999999999853 21 345556642211000 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 113 QLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
..+.++.++||||...... ..+... .. .-.....|.+++|+|+++...... +...+.+.+
T Consensus 47 -----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~-~~-~l~~~~aD~vI~VvDat~ler~l~-------l~~ql~e~g 112 (772)
T PRK09554 47 -----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CH-YILSGDADLLINVVDASNLERNLY-------LTLQLLELG 112 (772)
T ss_pred -----cCceEEEEEECCCccccccccccccHHHHHH-HH-HHhccCCCEEEEEecCCcchhhHH-------HHHHHHHcC
Confidence 2345688999999764321 111111 11 111236799999999987544321 222344567
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.|.++++||+|+.+........+.+ ++......+.+|+..+.|++++.+.+.
T Consensus 113 iPvIvVlNK~Dl~~~~~i~id~~~L----~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 113 IPCIVALNMLDIAEKQNIRIDIDAL----SARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred CCEEEEEEchhhhhccCcHHHHHHH----HHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 8999999999988654432222333 222222234489999999998887763
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=105.52 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=69.9
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
.....+.||||||..+..... ......+|.+++|||+..+....... +.....+.+.|.++++||+|
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~--------~~~~~~~D~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D 133 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEM--------IRGLRQADIAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMD 133 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHH--------HHHHTTSSEEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCT
T ss_pred ccccceeecccccccceeecc--------cceecccccceeeeeccccccccccc-----ccccccccccceEEeeeecc
Confidence 345678899999964322111 12244579999999998765543321 34455667788999999999
Q ss_pred CCCcCCCcchHHHHHHHH-HHhC--C--CCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEI-HEIN--S--LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l-~~~~--~--~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.. .+..+.++++...+ +... + ..+++ .|+.++.|+++|++...
T Consensus 134 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 134 LIE-KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp SSH-HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred chh-hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 993 22223344444223 3332 1 24555 89999999999987653
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=102.93 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+.++.||||||... +.. ........+|.+++|+|+.......... +...+...+.+ .++++||+|
T Consensus 63 ~~~~i~~iDtPG~~~---~~~-----~~~~~~~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 63 ANRHYAHVDCPGHAD---YIK-----NMITGAAQMDGAILVVSATDGPMPQTRE-----HLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCeEEEEEECcCHHH---HHH-----HHHHHhhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCcEEEEEeCCC
Confidence 356789999999753 221 1123455789999999998764432211 23344555566 457899999
Q ss_pred CCCcCCCcc-hHHHHHHHHHHhC---CCCEEE-EeecCCcChh
Q 025133 198 LVSPERSGD-SLDELEKEIHEIN---SLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 198 ~~~~~~~~~-~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~ 235 (257)
++..++..+ ..+++...++++. ..++++ +|+..+.+..
T Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 985443211 2335666666542 235555 8999887753
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=116.60 Aligned_cols=122 Identities=25% Similarity=0.264 Sum_probs=75.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||+|+|+. ...+++...+|++.... .....
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~----~~~aivs~~pgtTrd~~-------------~~~i~------------------- 247 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLK----QDRAIVSDIKGTTRDVV-------------EGDFE------------------- 247 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhC----CCCcccCCCCCcEEEEE-------------EEEEE-------------------
Confidence 3578999999999999999994 44456666677522111 11111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~viv 192 (257)
..+..+.++||||+.+.....+...+.........+|.+++|+|+.......+. +.........|.++|
T Consensus 248 -----~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~l~~~~~~~~piIlV 316 (442)
T TIGR00450 248 -----LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------LIIDLNKSKKPFILV 316 (442)
T ss_pred -----ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------HHHHHhhCCCCEEEE
Confidence 123446799999987765544433222333445678999999999764322111 111112224577899
Q ss_pred EeCCCCCCc
Q 025133 193 LNKVDLVSP 201 (257)
Q Consensus 193 lNK~D~~~~ 201 (257)
+||+|+...
T Consensus 317 ~NK~Dl~~~ 325 (442)
T TIGR00450 317 LNKIDLKIN 325 (442)
T ss_pred EECccCCCc
Confidence 999999654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=103.12 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||......-. . ..+.. ...|.+++|+|+.......+.. +...+...+.|.++|+||+|+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~--~---~~~~~-~~~D~~llVvda~~g~~~~d~~-----~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTT--L---FGLTG-YAPDYAMLVVAANAGIIGMTKE-----HLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHH--H---Hhhcc-cCCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEECccc
Confidence 35668899999964322111 1 01111 3578999999998765443321 344556667788999999999
Q ss_pred CCcCCCcchHHHHHHHHHH------------------------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHE------------------------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~------------------------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++.++..+.+..+.+.++. .....+++ +|+.++.|+++|...+
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 8766544555666666652 11233666 7999999999887655
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=93.75 Aligned_cols=141 Identities=23% Similarity=0.272 Sum_probs=81.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC--CCce---eeeeeecCCCceeeccchh
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE--GGAL---VEEWVELANGCICCTVKHS 106 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~--~~~~---~~~~~~l~~gcicc~~~~~ 106 (257)
++.+.|+.|+||||++..+... ..+.++.++..|++..... ........ .... -.....+..|+.+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSG-GAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcc-cchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence 3788999999999999999764 4588999999998652211 11111000 0000 0012233333333222233
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
....+ +.+. ..++|++||||+|....... + ...+|.++.|+.++....+ .......++
T Consensus 80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~~~~---~--------~~~Ad~~ivv~tpe~~D~y---------~~~k~~~~~ 137 (148)
T cd03114 80 TPEVI-RVLD-AAGFDVIIVETVGVGQSEVD---I--------ASMADTTVVVMAPGAGDDI---------QAIKAGIME 137 (148)
T ss_pred HHHHH-HHHH-hcCCCEEEEECCccChhhhh---H--------HHhCCEEEEEECCCchhHH---------HHhhhhHhh
Confidence 33333 3333 35899999999997633211 1 1235778888888733222 112235677
Q ss_pred hcCEEEEeCCC
Q 025133 187 FADVVILNKVD 197 (257)
Q Consensus 187 ~~~vivlNK~D 197 (257)
.+|++++||+|
T Consensus 138 ~~~~~~~~k~~ 148 (148)
T cd03114 138 IADIVVVNKAD 148 (148)
T ss_pred hcCEEEEeCCC
Confidence 79999999997
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=105.77 Aligned_cols=160 Identities=18% Similarity=0.291 Sum_probs=105.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..+.||.||||||+.+.+..+ ..|+..-+++-||+.+. .+| |.+++- ++++.+-....++|-+.|. +.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsv--dDVmEdl~~GPNGgLv~cm--Ey 81 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISV--DDVMEDLDLGPNGGLVYCM--EY 81 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccH--HHHHHHhccCCCccchhHH--HH
Confidence 578999999999999999875 55888889998887532 122 233332 2333334456677888884 33
Q ss_pred HHHHHHHHHHhcC--CCCEEEEecCCCCC---cHHHHHhcccccccccc-eeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 107 LVQALEQLVQRKE--RLDHILLETTGLAN---PAPLASVLWLDDQLESA-VRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 107 ~~~~l~~~~~~~~--~~~~ilIDt~G~~~---~~~~~~~~~~~~~~~~~-~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
+...+..+....+ .-+|+++|+||..+ ..+++..+. ++++.+ .++ .++|++|+.......++.++-.....
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv--~hl~~~~F~~-c~Vylldsqf~vD~~KfiSG~lsAls 158 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIV--EHLKQWNFNV-CVVYLLDSQFLVDSTKFISGCLSALS 158 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHH--HHHhcccCce-eEEEEeccchhhhHHHHHHHHHHHHH
Confidence 4444544443333 66999999999443 444443332 223332 344 78999999876666565544333344
Q ss_pred HHHHHhhcCEEEEeCCCCCCc
Q 025133 181 AIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~ 201 (257)
...+++.|++-|++|.|+++.
T Consensus 159 AMi~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 159 AMISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred HHHHhcCcchhhhhHHHHhhh
Confidence 567788999999999999986
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-12 Score=102.44 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=88.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+.+++.|.+|+|||||+|+|... + ......+|. +..... .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~----~-~~~~~~~~~----t~~~~~-----------~------------------ 49 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK----K-VRVGKRPGV----TRKPNH-----------Y------------------ 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----C-CccCCCCce----eeCceE-----------E------------------
Confidence 3467899999999999999999842 2 112233332 110000 0
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccc-cceeeeeEEEEEeccchHHHHhhhccC------C
Q 025133 111 LEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLE-SAVRLDSIITVVDAKNLLFQIDKYRHL------S 176 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~-~~~~~~~vi~vvDa~~~~~~~~~~~~~------~ 176 (257)
..+ ++.++||||+.... .....+. ...+. ....++.+++|+|+.......+..... .
T Consensus 50 -------~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~ 120 (201)
T PRK04213 50 -------DWG-DFILTDLPGFGFMSGVPKEVQEKIKDEI-VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV 120 (201)
T ss_pred -------eec-ceEEEeCCccccccccCHHHHHHHHHHH-HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH
Confidence 011 47899999963211 1111110 11122 334578999999997543211110000 0
Q ss_pred ChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC----CE-EEEeecCCcChhhhhcCccCCCC
Q 025133 177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL----AH-VIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 177 ~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~----a~-i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
.+...+.....|.++|+||+|+.+..+ ...+++...+....+. .+ +.+|++++ |+++++..+.-...
T Consensus 121 ~l~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 121 EMFDFLRELGIPPIVAVNKMDKIKNRD--EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHHHHcCCCeEEEEECccccCcHH--HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 012222334568899999999976531 1234444433210011 13 44899999 99999887754433
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-12 Score=103.54 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D 197 (257)
.+..+.|+||||..+..... ......+|.+++|+|+.......... ........+.+. ++|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~~~~~--------~~~~~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNM--------VTGASTADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHHHHHH--------HHhhhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence 35678999999964321111 12345689999999998654322110 112233334344 55799999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhc
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~ 239 (257)
+....+ .......+...++.++ +..+++ +|++++.++.+...
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCCC
Confidence 975432 1112334445455544 233444 89999999876553
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-12 Score=103.89 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||.. .+.. ..+.....+|.+++|+|+... ...... .........+. +.++++||+|+
T Consensus 83 ~~i~~iDtPG~~---~~~~-----~~~~~~~~~D~~llVvd~~~~~~~~~t~-----~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHE---ILMA-----TMLSGAAVMDGALLLIAANEPCPQPQTS-----EHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChH---HHHH-----HHHHhhhcCCEEEEEEECCCCCCCcchH-----HHHHHHHHcCCCcEEEEEEchhc
Confidence 568999999942 2221 223345568999999999863 111000 01112222333 45779999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCccCCCCCCC
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRAYDATVNP 249 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~ 249 (257)
.+..+....++.+...++.. ....+++ +|++++.|+++++..+....++.|
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 87543222234454544432 1234454 899999999999988866565544
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-12 Score=118.06 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=101.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..+++.|-||+||||++|+|.... ..+.|=||.|+.--.. ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-----q~VgNwpGvTVEkkeg-------------~~-------------------- 45 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-----QKVGNWPGVTVEKKEG-------------KL-------------------- 45 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-----ceecCCCCeeEEEEEE-------------EE--------------------
Confidence 348999999999999999999542 4567777752211100 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 113 QLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
+..+.++-+||.||.+.... ..|... +.+-.....|+++.|+||++....+.. ...+..++.|.+
T Consensus 46 ----~~~~~~i~ivDLPG~YSL~~~S~DE~Va--r~~ll~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE~g~p~i 112 (653)
T COG0370 46 ----KYKGHEIEIVDLPGTYSLTAYSEDEKVA--RDFLLEGKPDLIVNVVDATNLERNLYL-------TLQLLELGIPMI 112 (653)
T ss_pred ----EecCceEEEEeCCCcCCCCCCCchHHHH--HHHHhcCCCCEEEEEcccchHHHHHHH-------HHHHHHcCCCeE
Confidence 03345688999999664221 111111 111123567999999999987654332 223445678999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+++|++|........-+.+++.+.+. .+++ .+++++.|+++++..+..
T Consensus 113 laLNm~D~A~~~Gi~ID~~~L~~~LG-----vPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 113 LALNMIDEAKKRGIRIDIEKLSKLLG-----VPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred EEeccHhhHHhcCCcccHHHHHHHhC-----CCEEEEEeecCCCHHHHHHHHHH
Confidence 99999999887655455566655553 4555 789999999999887743
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=100.71 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=85.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||++++... +.... .+. .+.. ... ..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~----~~~~~--~~t--~~~~------------~~~-~~------------------- 57 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKND----RLAQH--QPT--QHPT------------SEE-LA------------------- 57 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CCccc--CCc--cccc------------eEE-EE-------------------
Confidence 56889999999999999999842 22111 111 1100 000 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~ 189 (257)
..+..+.++||||........... ...++.+++|+|+........... .+...+. ....|.
T Consensus 58 -----~~~~~~~~~D~~G~~~~~~~~~~~--------~~~ad~ii~vvD~~~~~~~~~~~~---~l~~l~~~~~~~~~pi 121 (184)
T smart00178 58 -----IGNIKFTTFDLGGHQQARRLWKDY--------FPEVNGIVYLVDAYDKERFAESKR---ELDALLSDEELATVPF 121 (184)
T ss_pred -----ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCcHHHHHHHHH---HHHHHHcChhhcCCCE
Confidence 123567899999976544333211 235799999999986432111100 0111111 124578
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN----------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+..... .+++.+.+.-.. +...++ .|+..+.|++++++.+
T Consensus 122 liv~NK~Dl~~~~~----~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 122 LILGNKIDAPYAAS----EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred EEEEeCccccCCCC----HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 99999999864322 455555552111 122344 7999999999888765
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=98.76 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+........... . +...+. ....|.++|+||+|
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~p~iiv~nK~D 126 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNY--------FESTDALIWVVDSSDRLRLDDCKR-E--LKELLQEERLAGATLLILANKQD 126 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH-H--HHHHHhChhhcCCCEEEEEECcc
Confidence 457899999975433332211 235789999999987532211100 0 111111 12357788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++.. ....+++ .|++++.|+++++...
T Consensus 127 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 127 LPGALS----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cccCCC----HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 976432 34555544322 1233555 7999999999988654
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.2e-11 Score=95.12 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+....... ....+|.+++|+|+.......... ......+...+.++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHHHHHH--------HHHhcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 456789999998765443321 123578999999998643221110 0111223346789999999986
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
+... ....+.+.+.+. . +...++ .|++++.++++++......
T Consensus 133 ~~~~-~~~~~~~~~~~~-~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 133 SADP-ERVKQQIEDVLG-L-DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred cCCH-HHHHHHHHHHhC-C-CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 5321 011222322221 1 222344 8999999999998876543
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=117.89 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=86.5
Q ss_pred ecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHHHhc
Q 025133 39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRK 118 (257)
Q Consensus 39 G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~ 118 (257)
|.+|+|||||+|+|.+. + ..+.+.+|.+...... ... .
T Consensus 1 G~pNvGKSSL~N~Ltg~----~-~~v~n~pG~Tv~~~~~-------------~i~------------------------~ 38 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGA----N-QTVGNWPGVTVEKKEG-------------KLG------------------------F 38 (591)
T ss_pred CCCCCCHHHHHHHHhCC----C-CeecCCCCeEEEEEEE-------------EEE------------------------E
Confidence 88999999999999843 2 2355666642211110 001 1
Q ss_pred CCCCEEEEecCCCCCcHHH--HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 119 ERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
.+..+.++||||....... .+... ..+......|.+++|+|+++...... ........+.|.++++||+
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~--~~~l~~~~aDvvI~VvDat~ler~l~-------l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVA--RDYLLNEKPDLVVNVVDASNLERNLY-------LTLQLLELGIPMILALNLV 109 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHH--HHHHhhcCCCEEEEEecCCcchhhHH-------HHHHHHhcCCCEEEEEehh
Confidence 2234789999997653221 11110 11111235799999999987543221 1112233457889999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.++..... .. +.+.+... .+++ +|++++.|++++++...
T Consensus 110 Dl~~~~~i~~---d~-~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 110 DEAEKKGIRI---DE-EKLEERLG-VPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HHHHhCCChh---hH-HHHHHHcC-CCEEEEECCCCCCHHHHHHHHH
Confidence 9976544211 22 22333323 3444 89999999999998774
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=95.10 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||..........+ ....+.+++|+|+........... .+.....+ -..+.+++.||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHY--------YENTNGIIFVVDSSDRERIEEAKE---ELHKLLNEEELKGVPLLIFANKQ 110 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCCcEEEEeecc
Confidence 3568899999965443332211 124689999999986532211100 01111111 235778899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh--C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI--N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~--~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...++.. + ...+++ .|++.+.|+++++..+
T Consensus 111 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 111 DLPGALS----VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCccccC----HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9987543 45555555432 1 223455 7999999999987654
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=94.21 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=61.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHh--hcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIA--FADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~--~~~vivlNK~D~ 198 (257)
.+.++||||..........+ ....+.+++|+|+......... . .+...+ .+.. .|.++++||+|+
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDITNRQSFDNT-D---KWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEECCCcHHHHHHHHHH--------hccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCEEEEEEEChhc
Confidence 46799999965443333221 2346889999999864332111 0 011112 2222 578899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+. ..+......+..+ ..++ .|++.+.++++++..+
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 118 SDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred cccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHHHH
Confidence 654331 2333444333332 4444 8999999999988755
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=93.54 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-----HHhhcCEEEEe
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----QIAFADVVILN 194 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----ql~~~~vivlN 194 (257)
+..+.++||||........+.. ...++.+++|+|+........... . +..... .-..|.++|+|
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHY--------YKNIQGIIFVIDSSDRLRLVVVKD-E--LELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHH--------HccCCEEEEEEeCCcHHHHHHHHH-H--HHHHHcCcccccCCCCEEEEEe
Confidence 3457799999976544443321 235789999999986543211000 0 011111 12467899999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHh--CC-CCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEI--NS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~--~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+... ..++...+... .. ...++ .|++++.|+++++..+
T Consensus 113 K~Dl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 113 KMDLPDALT----AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred CccccCCCC----HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 999976432 23333333211 11 12345 7999999999998754
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-11 Score=103.75 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+..... ......+|.+++|+|+.......... ......+.+.|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~ailVVDa~~g~~~~t~~-----~~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEV--------ERSLRVLDGAVAVFDAVAGVEPQTET-----VWRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHHHHH--------HHHHHHcCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 45678999999976533221 12334578999999998765432221 233445556789999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC-cChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ-VDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~-~~~~~l~~~~~~ 243 (257)
.+.+. ...++.++..++. .+...++ +|+..+ .++-+++....+
T Consensus 129 ~~a~~-~~~~~~l~~~l~~-~~~~~~~Pisa~~~f~g~vd~~~~~a~ 173 (270)
T cd01886 129 TGADF-FRVVEQIREKLGA-NPVPLQLPIGEEDDFRGVVDLIEMKAL 173 (270)
T ss_pred CCCCH-HHHHHHHHHHhCC-CceEEEeccccCCCceEEEEccccEEE
Confidence 76431 1234555554432 2333333 555554 245455544443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-11 Score=92.01 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
.++.++|+||..........+ ...++.+++|+|+..... +.... .+...+.+.. .+.++++||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~-~~~~~---~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSY--------YRGAHGAILVYDITNRES-FENLD---KWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEEEEecCChHHHHHHHHHH--------hcCCCEEEEEEECCCHHH-HHHHH---HHHHHHHHhCCCCCcEEEEEEccc
Confidence 457799999975433333221 234799999999987432 12111 0222233322 57788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..+.+ ...+.+...... . ..+++ .|+..+.++++++..+
T Consensus 117 ~~~~~~--~~~~~~~~~~~~-~-~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 117 LEDQRQ--VSTEEAQQFAKE-N-GLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred cccccc--ccHHHHHHHHHH-c-CCeEEEEecCCCCCHHHHHHHH
Confidence 973332 224555555544 2 33455 7889999999887653
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=96.84 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.+.||+|.......... .....+.+++|+|+.+......... .+...+.. -..|.++|+||+|
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~--------~~~~~~~iv~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKC--------YLENTDGLVYVVDSSDEARLDESQK---ELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCcHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECcc
Confidence 45789999997643332221 1234688999999987542111000 01111111 2457899999999
Q ss_pred CCCcCCCcchHHHHHHHHH--HhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... ..++...++ ... ...+++ .|++++.|+++++..+
T Consensus 113 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 113 LPGALT----AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred cccCcC----HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 865322 233333331 111 122455 6999999999988764
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=94.78 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++++|....... ...... +...... ...|.++|+||+|
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~~~--~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNY--------HRSGEGFLLVFSITDMESF-TATAEF--REQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEECCChhhhhHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHHHH--HHHHHHhcCCCCCCEEEEEEccc
Confidence 457899999976544433221 2235678888887653321 111000 1112222 3568899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+ ..........+..+ .+++ .|++++.|+++++...
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 117 LEDKRQ--VSSEEAANLARQWG--VPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred cccccc--cCHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHHHH
Confidence 987322 11333444444433 3455 8999999999998764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=95.36 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||..........+ ....+.+++|+|+........... .+..... ....|.++|+||+|
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERY--------CRGVNAIVYVVDAADRTALEAAKN---ELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH---HHHHHHcChhhcCCCEEEEEeCcc
Confidence 457799999975444333221 234688999999986543211100 0011111 12347788999999
Q ss_pred CCCcCCCcchHHHHHHHHH--Hh-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EI-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ...+...+. .. ....+++ .|++++.++++++..+
T Consensus 113 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 113 LPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred ccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 876543 222322221 11 1223444 7999999999887654
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=92.99 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........+. .....+.+++++|+.+...... .. .+...+.+. ..|.++|.||+|
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQS--------YYRSANGAIIAYDITRRSSFES-VP---HWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHh-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 35789999995432222221 1234689999999987644211 10 022222222 235688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..+......+......-+..|++++.++++++...
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 120 LEEQREV--LFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccccccc--CHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 9865432 23344444443332223448999999999887654
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-11 Score=95.94 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--------HhhcCEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--------IAFADVVI 192 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--------l~~~~viv 192 (257)
..+.++||+|..........+ ....+.+++|+|+.+....... . .+...+.+ ...|.++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~D~~~~~s~~~~-~---~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEF--------YKDTQGVLLVYDVTDRQSFEAL-D---SWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred EEEEEEECCccHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHhH-H---HHHHHHHHhccccccCCCceEEEE
Confidence 456799999975443332211 2346899999999865332111 0 01111211 12467889
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.||+|+.+... ...+....+.+..+ .+++ .|++++.|+++++..+
T Consensus 117 ~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 117 ANKIDLTKHRA--VSEDEGRLWAESKG--FKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred EEchhcccccc--cCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 99999974322 12344444444432 4555 7999999999988765
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=94.71 Aligned_cols=106 Identities=16% Similarity=0.092 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||........... ...++.+++|+|+........... .+...+.+ -..|.++|+||+|
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCY--------YSNTDAIIYVVDSTDRDRLGTAKE---ELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCcEEEEEeCCC
Confidence 457899999986543332211 235789999999986532211000 01111111 1457899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ..++...+.... ...+++ +|++++.|+++++...
T Consensus 112 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 112 MPGALS----EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCCCC----HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 875432 233433332111 112355 8999999999988754
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=97.20 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~ 196 (257)
+..+.++||||........... ....+.+++|+|+++.... +.... .+.....+ . ..+.+++.||+
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~s~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~ 110 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHY--------YLNTQAVVFVVDSSHRDRV-SEAHS--ELAKLLTEKELRDALLLIFANKQ 110 (169)
T ss_pred CEEEEEEECCCChhcchHHHHH--------hccCCEEEEEEeCCcHHHH-HHHHH--HHHHHhcChhhCCCCEEEEEeCc
Confidence 3567899999976544333221 2346899999999864322 11100 01122222 1 14678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCC---C--CEEE-EeecCCcChhhhhcCccCCCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINS---L--AHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~---~--a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
|+..... .+.+...++ .+. . ..++ .|++++.|+++++..+.-...
T Consensus 111 Dl~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 111 DVAGALS----VEEMTELLS-LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CcccCCC----HHHHHHHhC-CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 9864322 344544442 211 1 1333 699999999999887643333
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-10 Score=89.82 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||..+...+.+.. ....+.+++|+|+...... ..... +...+.+. ..|.+++.||+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~piiiv~NK~ 117 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQY--------MRTGEGFLLVFSVTDRGSF-EEVDK---FHTQILRVKDRDEFPMILVGNKA 117 (164)
T ss_pred EEEEEEECCCCcchhHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHHH---HHHHHHHHhCCCCCCEEEEeeCc
Confidence 346789999976655444322 1246899999999875432 21111 12222222 34778899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..+... ..+...+..+..+ .+++ .|++.+.|+++++...
T Consensus 118 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 118 DLEHQRKV--SREEGQELARKLK--IPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccccccee--cHHHHHHHHHHcC--CcEEEeeCCCCCCHHHHHHHH
Confidence 99765431 2334445444432 2444 8999999999988655
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=91.78 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||+|..........+ ....+.+++|+|+....... ... .+...+.++ ..+.++|.||+|
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~-~~~---~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSY--------YRSANALILTYDITCEESFR-CLP---EWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHH-HHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346789999964333222211 23468899999998653321 110 011122222 245588999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+....+. .......+.+..+..-+..|++++.|+.+++..+
T Consensus 124 ~~~~~~i---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 124 LAERREV---SQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred ccccccc---CHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 8765442 2333444555555333348999999999988764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-11 Score=97.09 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=89.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.++++|.+|+|||||+|.|+. .+....... .+. +.... .. ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg----~~~~~~~~~~~~~----T~~~~--------~~-~~~------------------- 45 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILG----REVFESKLSASSV----TKTCQ--------KE-SAV------------------- 45 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhC----CCccccccCCCCc----ccccc--------ee-eEE-------------------
Confidence 378999999999999999994 332222211 111 10000 00 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---
Q 025133 113 QLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--- 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--- 185 (257)
..+..+.+|||||+.+.. .+...+. .........++.+++|+|+.++...... ....+.++
T Consensus 46 -----~~~~~i~viDTPG~~d~~~~~~~~~~~i~-~~~~~~~~g~~~illVi~~~~~t~~d~~------~l~~l~~~fg~ 113 (196)
T cd01852 46 -----WDGRRVNVIDTPGLFDTSVSPEQLSKEIV-RCLSLSAPGPHAFLLVVPLGRFTEEEEQ------AVETLQELFGE 113 (196)
T ss_pred -----ECCeEEEEEECcCCCCccCChHHHHHHHH-HHHHhcCCCCEEEEEEEECCCcCHHHHH------HHHHHHHHhCh
Confidence 234568899999988652 2222211 1112223567899999999874332111 22222222
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchH----HHHHHHHHHhCCCCEEEEe----ecCCcChhhhhcCccCCCCC
Q 025133 186 --AFADVVILNKVDLVSPERSGDSL----DELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l----~~~~~~l~~~~~~a~i~~s----~~~~~~~~~l~~~~~~~~~~ 247 (257)
-...++++|++|.+...+....+ ..+...+++.......+-. +..+..+.+|+..+.....+
T Consensus 114 ~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 114 KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 24567899999988765322211 3445555554443333321 33456777887776554443
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-11 Score=96.36 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||.......... ....++.+++|+|+.......... +.....+.+.+.++|+||+|+.
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~~ilV~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVER--------VLSMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 456789999997654433321 124578999999998643211110 1122234456889999999997
Q ss_pred CcCCCcchHHHHHHHHHHhC-----CCCEEE-EeecCCcChhhh
Q 025133 200 SPERSGDSLDELEKEIHEIN-----SLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~-----~~a~i~-~s~~~~~~~~~l 237 (257)
.... ...++++...+..+. ...+++ .|++++.++.++
T Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 131 DARP-EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CCCH-HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 5321 123445555543321 123444 788888777544
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=94.27 Aligned_cols=110 Identities=21% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
..+.+.||+|..........+ ...++.+++|+|+...............+.........|.++|+||+|+..
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSY--------TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 457799999975433332221 235789999999987533211100000000111123468899999999865
Q ss_pred cCCCcchHHHHHHHHH--HhCC--CCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIH--EINS--LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~--~~~~--~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
... .+.+...+. .... ...++ .|++.+.|+++++..+.
T Consensus 124 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 124 ALS----VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred cCC----HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 321 233333332 1111 23444 79999999998887653
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-11 Score=93.60 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
.++.++||||........... ....+.+++|+|+.......... . +...+.+ -..|.++|.||+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSY--------YRGAQGVILVYDVTRRDTFTNLE-T---WLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHhHH-H---HHHHHHHhCCCCCCcEEEEEECC
Confidence 457899999964332222111 23578999999998654422110 0 1111212 134568899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... ..+......+.. ..+++ .|++.+.|+++++...
T Consensus 117 D~~~~~~---~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 117 DKENREV---TREEGLKFARKH--NMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ccccccc---CHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 9984432 234444544443 34555 7999999999988654
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-11 Score=97.40 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+++.++||||+.+.....+.+. .. ......|.+++|.|.. +... +.. +...+.+.+.+.++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l-~~--~~~~~~d~~l~v~~~~-~~~~-d~~-----~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYL-EE--MKFSEYDFFIIISSTR-FSSN-DVK-----LAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHH-HH--hCccCcCEEEEEeCCC-CCHH-HHH-----HHHHHHHhCCCEEEEEecccchh
Confidence 4678999999875422221111 00 1133567777776543 3221 111 23344555667899999999975
Q ss_pred cCC---------CcchHHHHHHHHHHhC-----CCCEEE-Eeec--CCcChhhhhcCccCCCC
Q 025133 201 PER---------SGDSLDELEKEIHEIN-----SLAHVI-RSVR--CQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 201 ~~~---------~~~~l~~~~~~l~~~~-----~~a~i~-~s~~--~~~~~~~l~~~~~~~~~ 246 (257)
..+ ..+.++.+++.+.... +..+++ +|+. ++-++..|.++..-.++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 322 1133555555554322 234566 5665 45677777766654443
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=90.94 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHHH------hhcCEEEEe
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQI------AFADVVILN 194 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~ql------~~~~vivlN 194 (257)
.+.++|+||......+... ....++.+++++|+...... .... .+. ....+. ..|.++|+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNPKSF-ESLD---SWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEeCCChHHHHhHHHH--------HhcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCccCCCCceEEEEEE
Confidence 3568999996433222221 12347899999999865432 1110 011 112222 356788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+|+..+.. ...+.+....+... ..+++ .|+.++.|+++++..+.
T Consensus 118 K~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 118 KIDLEEKRQ--VSTKKAQQWCQSNG-NIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred Ccccccccc--cCHHHHHHHHHHcC-CceEEEEECCCCCCHHHHHHHHH
Confidence 999985332 12345555554433 34555 89999999999887654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=92.08 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||||........+. .....+.+++|+|.++..... ... .+...+.+. ..|.++|.||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSN--------YWESPSVFILVYDVSNKASFE-NCS---RWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHH-HHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 45789999996443333322 124579999999998754321 110 022222222 3577899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+... ..... +...+ +.+++ .|+.++.++++++...
T Consensus 120 ~~~~~~~~--~~~~~-~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 120 ADKAEVTD--AQAQA-FAQAN-QLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred ccccCCCH--HHHHH-HHHHc-CCeEEEEeCCCCCChHHHHHHH
Confidence 77644211 11222 22222 23455 7999999999887654
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-11 Score=94.23 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||......+.... ....+.+++|+|+...... .... .+...+.+. ..|.++|.||+
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQY--------MRTGEGFLLVYSITDRQSF-EEIK---KFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEEECCCcccchHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 346689999977655444322 2246888999998864332 1110 011111111 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+...... ..+......+..+ .+++ .|++++.++++++....
T Consensus 116 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 116 DLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred cccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHHHHH
Confidence 99764321 1233334444433 4555 79999999999987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=90.34 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=62.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++|+||..........+ ...+|.+++|+|+.+........ .+...+.+. ..|.+++.||+|+
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~~----~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSY--------YRGAVGALLVYDITNRESFENLK----NWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEECCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchhc
Confidence 46799999964333222211 23478999999998754432210 011122221 3578899999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|+.++.++++++..+
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 118 EDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred ccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHH
Confidence 764331 2344555554433 3455 7899999999987765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-11 Score=96.80 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=82.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|+|||||++.|.... ....... .+.+.. ...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~----~~~~~~t----~g~~~~-------------~i~------------------ 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED----ISHITPT----QGFNIK-------------TVQ------------------ 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC----CcccCCC----CCcceE-------------EEE------------------
Confidence 4569999999999999999998531 1101111 111100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH---HHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~ql~~~ 188 (257)
..+.++.++||+|........... ....+.+++|+|+............ +.... .....|
T Consensus 55 ------~~~~~~~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~p 117 (173)
T cd04155 55 ------SDGFKLNVWDIGGQRAIRPYWRNY--------FENTDCLIYVIDSADKKRLEEAGAE---LVELLEEEKLAGVP 117 (173)
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHhChhhcCCC
Confidence 123457799999975432222211 2346789999999864321110000 01111 122357
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEE-EEeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
.++++||+|+....+ .+.+...+.... ...++ ..|++++.|++++++.+
T Consensus 118 ~ivv~nK~D~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 118 VLVFANKQDLATAAP----AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred EEEEEECCCCccCCC----HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 788999999976543 344443332111 11123 37999999999988765
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=95.15 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivl 193 (257)
..+.|+||||...... ..+.. ..........+|.+++|+|+....+. +... .+...+.+. ..|.++|.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~-~~~~~~~~~~ad~iilv~D~~~~~S~-~~~~---~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEW-MDPRFRGLRNSRAFILVYDICSPDSF-HYVK---LLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred EEEEEEeCCCcccCCccchhHH-HHHHHhhhccCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcccCCCCCCEEEEE
Confidence 4567999999753211 00000 01112234568999999999865432 1110 011112221 24779999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+...... ..+.+..+.++. ..++++ .|++++.|+++++....
T Consensus 124 NK~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 124 NKRDQQRHRFA--PRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred ECccccccccc--cHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHH
Confidence 99999764321 122333333322 234555 79999999999887664
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=91.41 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.+....... . .+...+.+. ..|.+++.||+|
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iivv~nK~D 116 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITNRTSFEAL-P---TWLSDARALASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEECcchHHHHHhHHH--------HhcCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEEchh
Confidence 34679999996433222211 12357899999999875543211 0 022222222 335788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..+......+..+ ..++ .|++++.++++++...
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 117 LADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred cchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHH
Confidence 9764332 2344455555443 4555 8999999999987654
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=92.85 Aligned_cols=174 Identities=22% Similarity=0.223 Sum_probs=96.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchh---
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHS--- 106 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~--- 106 (257)
.+++++|++|+||||++-+|..+ ..++++++++.|... .+...++-.... -++.. ..+....+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~----------~~~~~~~~~~~ 70 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYAEILGVPF----------YVARTESDPAE 70 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHHHHHTEEE----------EESSTTSCHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHHHHhcccc----------chhhcchhhHH
Confidence 47899999999999999999763 239999999999765 443333222100 00100 00111212
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 -LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 -~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+...+++.. ..++|+|||||+|..... ...+.+. .+......+.+++|+++......+... . .+.+
T Consensus 71 ~~~~~l~~~~--~~~~D~vlIDT~Gr~~~d~~~~~el~---~~~~~~~~~~~~LVlsa~~~~~~~~~~------~-~~~~ 138 (196)
T PF00448_consen 71 IAREALEKFR--KKGYDLVLIDTAGRSPRDEELLEELK---KLLEALNPDEVHLVLSATMGQEDLEQA------L-AFYE 138 (196)
T ss_dssp HHHHHHHHHH--HTTSSEEEEEE-SSSSTHHHHHHHHH---HHHHHHSSSEEEEEEEGGGGGHHHHHH------H-HHHH
T ss_pred HHHHHHHHHh--hcCCCEEEEecCCcchhhHHHHHHHH---HHhhhcCCccceEEEecccChHHHHHH------H-HHhh
Confidence 223333322 457899999999977543 2222221 112223566899999999877654421 1 2222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.-..+-++++|.|.... ...+-..+.+.. .++-.-+.++ ++++|.
T Consensus 139 ~~~~~~lIlTKlDet~~------~G~~l~~~~~~~--~Pi~~it~Gq-~V~Dl~ 183 (196)
T PF00448_consen 139 AFGIDGLILTKLDETAR------LGALLSLAYESG--LPISYITTGQ-RVDDLE 183 (196)
T ss_dssp HSSTCEEEEESTTSSST------THHHHHHHHHHT--SEEEEEESSS-STTGEE
T ss_pred cccCceEEEEeecCCCC------cccceeHHHHhC--CCeEEEECCC-ChhcCc
Confidence 22357889999998764 355555554433 3454444443 335443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-10 Score=99.21 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..+.+++++..|... .+...++... ...++.+ .....|.- ...-+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R-~~a~eqL~~~a~~lgv~v---~~~~~g~d---p~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR-AGAIEQLEEHAERLGVKV---IKHKYGAD---PAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc-HHHHHHHHHHHHHcCCce---ecccCCCC---HHHHH
Confidence 3468999999999999999999763 447789998887543 1111111111 0011111 00000000 00111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+... ...++++|||||+|..+ ...++..+. .+......+.+++|+|+......... ...+.+.-
T Consensus 212 ~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~---~i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~f~~~~ 279 (336)
T PRK14974 212 YDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELK---KIVRVTKPDLVIFVGDALAGNDAVEQ-------AREFNEAV 279 (336)
T ss_pred HHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHH---HHHHhhCCceEEEeeccccchhHHHH-------HHHHHhcC
Confidence 2222222 14568999999999664 455544331 12223446788999999875443221 12223333
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
..+.+|+||.|....- ..+-...... ..+|..-+ .|.++++|..
T Consensus 280 ~~~giIlTKlD~~~~~------G~~ls~~~~~--~~Pi~~i~-~Gq~v~Dl~~ 323 (336)
T PRK14974 280 GIDGVILTKVDADAKG------GAALSIAYVI--GKPILFLG-VGQGYDDLIP 323 (336)
T ss_pred CCCEEEEeeecCCCCc------cHHHHHHHHH--CcCEEEEe-CCCChhhccc
Confidence 4699999999987542 2222323222 34555434 3456665543
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-11 Score=96.22 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
+.+.++||||......+.... ....+.+++++|.......... ... +.....+ ...|.+++.||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~-~~~--~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKY--------SIGIHGYILVYSVTSRKSFEVV-KVI--YDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEECCChHhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCCEEEEEEchh
Confidence 456799999975433322211 2246778999998865432111 000 1112222 2347899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+....+. ..+......+..+ .+++ .|++.+.++.+++.....
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 118 LHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred hhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHH
Confidence 9754332 1223333333322 3455 789999999988877643
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.5e-11 Score=94.77 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||.......... ....++.+++|+|++.......... .+...+.. ...|.++++||+
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~V~D~s~~~~~~~~~~---~l~~~~~~~~~~~~p~viv~NK~ 126 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNT--------YYTNTDAVILVIDSTDRERLPLTKE---ELYKMLAHEDLRKAVLLVLANKQ 126 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHH--------HhhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECC
Confidence 356889999997543322221 1235789999999986532111100 01111111 135679999999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...+.. . +...+++ .|++++.|++++++.+
T Consensus 127 Dl~~~~~----~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 127 DLKGAMT----PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCCCCC----HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 9875322 3344444421 1 1222444 7999999999988754
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.5e-11 Score=92.64 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=59.8
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D~ 198 (257)
+-++||+|..+...+.... ....+.+++|+|....... .... .+...+.+. ..|.++|.||+|+
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~--------~~~~~~~i~v~~~~~~~s~-~~~~---~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINSRKSF-EDIH---TYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEECCCCcchHHHHHHH--------HhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 5579999976554444321 1236788888888754321 1110 011222222 3467889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+... .........+..+ .+++ .|++++.|+++++...
T Consensus 119 ~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 119 AARTV---SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred cccee---cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHHHHH
Confidence 76432 2334444444332 2454 8999999999988665
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-11 Score=113.04 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~~~ 200 (257)
.+-||||||.. .+.. ..+.....+|.+++|+|+.......... ....+..++.+. ++|+||+|+++
T Consensus 52 ~i~~IDtPGhe---~fi~-----~m~~g~~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 52 VLGFIDVPGHE---KFLS-----NMLAGVGGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEEECCCHH---HHHH-----HHHHHhhcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCccCC
Confidence 36799999963 2222 1223355689999999998754332211 123344455565 68999999987
Q ss_pred cCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccC
Q 025133 201 PERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++......+++.+.++..+ ...+++ +|+.++.|+++|++.+..
T Consensus 119 ~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 119 EARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 5443233445555555433 234555 899999999999888743
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-12 Score=104.11 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=97.0
Q ss_pred EEEEecCCCcHHHHHHHHHc--cCCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeec--cc
Q 025133 35 TVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCT--VK 104 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~--~~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~--~~ 104 (257)
.+|+|||||||||..+.... +..|+++++++-||+... .++ +.++.. ..++.+--...++|-.||. +.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~--edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITV--EDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccH--HHHHHHhCCCCchhHHHHHHHHH
Confidence 57899999999999998855 244889999999998722 111 111111 1111122344567777886 33
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc----HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP----APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~----~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+ .++..-+. .....|+++|.||..+. ......+. ...+...++ +++.++|+--+.++....+.......
T Consensus 83 ~~i-dwl~~~l~-~~~~~Y~lFDcPGQVELft~h~~l~~I~~--~Lek~~~rl-~~V~LiDs~ycs~p~~~iS~lL~sl~ 157 (290)
T KOG1533|consen 83 ANI-DWLLEKLK-PLTDHYVLFDCPGQVELFTHHDSLNKIFR--KLEKLDYRL-VAVNLIDSHYCSDPSKFISSLLVSLA 157 (290)
T ss_pred hhh-HHHHHHhh-hccCcEEEEeCCCcEEEEeccchHHHHHH--HHHHcCceE-EEEEeeeceeeCChHHHHHHHHHHHH
Confidence 444 33333332 24668999999995432 12222111 111233444 78899998877666555433222223
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCC
Q 025133 181 AIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
..-+++.|++-|++|+|++....
T Consensus 158 tMl~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 158 TMLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHhhcccchhhhhHhHHHHhhc
Confidence 34667889999999999986543
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=90.60 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=60.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEeC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlNK 195 (257)
.+.+.||+|......... ......+.+++|+|+.......+ +...+.++ ..|.++|.||
T Consensus 54 ~~~i~Dt~G~~~~~~~~~--------~~~~~~d~il~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~pvivv~nK 118 (168)
T cd01866 54 KLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNH-------LTSWLEDARQHSNSNMTIMLIGNK 118 (168)
T ss_pred EEEEEECCCcHHHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCcEEEEEEC
Confidence 477999999543222221 11235788999999985433211 12222222 2467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+.+.... ..+..+...+.. ...++ .|+..+.++++++...
T Consensus 119 ~Dl~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 119 CDLESRREV--SYEEGEAFAKEH--GLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred cccccccCC--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 999854332 234444444443 34555 7899999999887543
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=92.54 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.+.||||......+.... ...++.+++|+|......... ... +...+.+ -..|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~-~~~---~~~~i~~~~~~~~~piilv~nK~ 116 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLY--------MKNGQGFVLVYSITAQSTFND-LQD---LREQILRVKDTEDVPMILVGNKC 116 (164)
T ss_pred EEEEEEECCCcccchhHHHHH--------HhhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCEEEEEECC
Confidence 345689999976554444322 123578899999865433211 100 1111111 135779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+...... .........++.+ .+++ .|++.+.++++++..+.
T Consensus 117 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 117 DLEDERVV--GKEQGQNLARQWG--CAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred cchhccEE--cHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHH
Confidence 99765332 1233333333333 3455 89999999999887653
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=92.42 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=63.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||..+....... .....+.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKT---KWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEccHHh
Confidence 45779999997654222111 1235789999999986433222110 011122222 3678999999999
Q ss_pred CCcCCCc---------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG---------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~---------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....... -..+.........+.. .++ .|+..+.++++++..+
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 117 RDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCCCHHHHHHHH
Confidence 8765321 0123344444444432 444 7999999999988654
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=101.94 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=87.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..++.++|++|+||||++.+|... ..|++++++..|+.. .+.-..+-... ..++.+ ... ....+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R-~aA~eQLk~~a~~~~vp~---~~~-------~~~~dp 167 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR-AGAFDQLKQNATKARIPF---YGS-------YTESDP 167 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc-hhHHHHHHHHhhccCCeE---Eee-------cCCCCH
Confidence 3458999999999999999999753 458899999998754 21111111000 011111 000 011121
Q ss_pred H----HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 V----QALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~----~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
. ..+..+- ..++|+|||||+|-.+. ..+.+.+. .+......+.+++|+|+..+....+ ....+
T Consensus 168 ~~i~~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~---~i~~~~~p~e~lLVlda~~Gq~a~~-------~a~~F 235 (429)
T TIGR01425 168 VKIASEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEML---QVAEAIQPDNIIFVMDGSIGQAAEA-------QAKAF 235 (429)
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHH---HHhhhcCCcEEEEEeccccChhHHH-------HHHHH
Confidence 1 2233221 35799999999996554 33443332 1223445678999999987655432 22334
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
.+.-..+-+|+||.|....
T Consensus 236 ~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 236 KDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred HhccCCcEEEEECccCCCC
Confidence 4434578999999998654
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=89.92 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+.+........ .+...+.+.. .+.+++.||+|
T Consensus 50 ~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D 117 (163)
T cd01860 50 VKFEIWDTAGQERYRSLAPM--------YYRGAAAAIVVYDITSEESFEKAK----SWVKELQRNASPNIIIALVGNKAD 117 (163)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 34678999995322222111 123468999999998654321110 0122222322 34677889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ...+......+..+ ..++ .|++++.++.+++...
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 118 LESKRQ--VSTEEAQEYADENG--LLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred ccccCc--CCHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHH
Confidence 875332 12445555555544 4455 7899999999988764
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-11 Score=92.76 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|.||||......+.... ....+.+++|+|....... +... .+...+.+. ..|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~piilv~nK~ 116 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLY--------IKNGQGFVLVYSITSQSSF-NDLQ---DLREQILRVKDTENVPMVLVGNKC 116 (163)
T ss_pred EEEEEEECCCccccchHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 345689999976554443221 2246889999998764332 1110 011122221 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... ..+......+..+ .+++ .|++.+.++.+++...
T Consensus 117 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 117 DLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred ccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHH
Confidence 98764332 1223333333333 4555 7999999999988765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=91.51 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D 197 (257)
+.++.++||||.......... .....+.+++|+|+.+......... .+...+.+. ..|.++|.||+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAA--------EIRKANVICLVYSVDRPSTLERIRT---KWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhh--------hcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchh
Confidence 356789999997654332211 1245788999999876443221000 011122222 357788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+........+.+....++.+....++ .|++.+.++++++...
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 9875431100112222222222222455 7899999999988754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=93.51 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh------hcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~------~~~vivlN 194 (257)
..+.|.||+|...+..+...+ ...++.+++|+|....... .... .+...+.+.. .+.++|.|
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~--------~~~ad~iilV~D~t~~~s~-~~~~---~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKY--------IYGAHAVFLVYDVTNSQSF-ENLE---DWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhccccCCCceEEEEEE
Confidence 456799999965544444322 2357999999999865432 1110 0122222221 23567899
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
|+|+....+. ..+......+. +....+..|++++.++++++..+.
T Consensus 118 K~DL~~~~~v--~~~~~~~~~~~-~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 118 KTDLEHNRTV--KDDKHARFAQA-NGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred Cccccccccc--CHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999754332 22333343333 333334489999999999887663
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=90.78 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+...... .... .+...+.+. ..|.++|.||+|
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~---~~~~~~~~~~~~~~pi~vv~nK~D 119 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKKQTF-ENVE---RWLKELRDHADSNIVIMLVGNKSD 119 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHH--------HCCCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346799999975443333211 1245789999999854432 2111 112222222 246678899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++.....+. + ...++ .|++++.++++++..+
T Consensus 120 l~~~~~~--~~~~~~~~~~~-~-~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 120 LRHLRAV--PTEEAKAFAEK-N-GLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ccccccC--CHHHHHHHHHH-c-CCEEEEEECCCCCCHHHHHHHH
Confidence 8765332 23344444443 2 34455 7999999999988765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-11 Score=92.12 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++|+||........... ....+.+++|+|......... ... +...+.+. ..|.++++||+
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~p~ivv~nK~ 114 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLY--------IRQGDGFILVYSITDRESFEE-IKG---YREQILRVKDDEDIPIVLVGNKC 114 (160)
T ss_pred EEEEEEECCChHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCcEEEEEECC
Confidence 346799999966543333221 234688999999876443211 100 11122221 35678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+ ...+......++.. .+++ .|++.+.++++++..+
T Consensus 115 D~~~~~~--~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 115 DLENERQ--VSKEEGKALAKEWG--CPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred cccccce--ecHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHH
Confidence 9987433 22345555555544 3455 7899999999988765
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=89.82 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|.......... .....+.+++|+|....... .... .+...+.+. ..+.++|.||+|
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESF-NAVQ---DWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HccCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCCEEEEEECcc
Confidence 34679999996543332221 12457899999998764322 2111 122223332 235788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... ..+...+..+.. .. +++ .|++++.|+++++....
T Consensus 118 l~~~~~~--~~~~~~~~~~~~-~~-~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 118 MEDERVV--SSERGRQLADQL-GF-EFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cCccccc--CHHHHHHHHHHc-CC-EEEEEECCCCCCHHHHHHHHH
Confidence 9765432 123333333332 22 345 89999999999887653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=106.60 Aligned_cols=155 Identities=20% Similarity=0.222 Sum_probs=90.6
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++++.|..|+|||||+++|... ++ ...+.+. ++... +. ......
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v--~~~e~~G---IT~~i------g~---~~v~~~------------- 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT----KV--AQGEAGG---ITQHI------GA---YHVENE------------- 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--ccccCCc---eeecc------eE---EEEEEC-------------
Confidence 347799999999999999999999742 11 1111111 11000 00 001110
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
....+.|+||||......+.. ......|.+++|+|+.......... ........+.|
T Consensus 133 ----------~~~~i~~iDTPGhe~F~~~r~--------rga~~aDiaILVVda~dgv~~qT~e-----~i~~~~~~~vP 189 (587)
T TIGR00487 133 ----------DGKMITFLDTPGHEAFTSMRA--------RGAKVTDIVVLVVAADDGVMPQTIE-----AISHAKAANVP 189 (587)
T ss_pred ----------CCcEEEEEECCCCcchhhHHH--------hhhccCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCC
Confidence 112578999999754433321 1234678999999998643222110 11222334568
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN-------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++++||+|+.+.. .+.+...++... ...+++ .|++++.|+++++..+.
T Consensus 190 iIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 190 IIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred EEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 89999999986532 234444443321 123444 89999999999988773
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=92.99 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~D 197 (257)
..+.+.||+|........... ...++.+++|+|+...... ..... .+...+.+ . ..|.++|.||+|
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~--------~~~a~~ii~v~D~t~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVDSADRDRI-DEARQ--ELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCchhhH-HHHHH--HHHHHhcCHhhcCCcEEEEEECcC
Confidence 457899999986544433211 2357899999999874321 11100 01112211 1 246788999999
Q ss_pred CCCcCCCcchHHHHHHHHHH--hCC-CCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHE--INS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~--~~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++. .+. ...++ +|++++.|+++++..+
T Consensus 122 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 122 LPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CccCCC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 865322 3455554421 121 12344 7999999999888654
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-11 Score=111.59 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=66.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~~ 199 (257)
..+.|+||||.. .+... .+.....+|.+++|+|+.......... ....+..++.+ .++|+||+|+.
T Consensus 50 ~~v~~iDtPGhe---~f~~~-----~~~g~~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHE---KFISN-----AIAGGGGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHH---HHHHH-----HHhhhccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCCC
Confidence 457799999953 22211 123455689999999998743221111 12234455667 78899999998
Q ss_pred CcCCCcchHHHHHHHHHHhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+......+++...++... +..+++ +|+.++.|++++...+
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHH
Confidence 76532122334555555432 245666 8999999998877654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-10 Score=89.31 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|........... ....+.+++|+|+.......+.. .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASY--------YHKAHACILVFDVTRKITYKNLS----KWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCcEEEEEECccC
Confidence 456789999975443333211 23568999999998654322110 022222332 4577999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ........+.. . .+++ .|++++.|+++++...
T Consensus 117 ~~~~-----~~~~~~~~~~~-~-~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 117 DPSV-----TQKKFNFAEKH-N-LPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred chhH-----HHHHHHHHHHc-C-CeEEEEeCCCCCCHHHHHHHH
Confidence 5321 12222222222 2 3444 8999999999988765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=97.98 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred eeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 151 ~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
.++++++|++++.. .....+.. +...+.+ ..+.++|+||+|+++.++.......+.+.++..
T Consensus 113 ~rvh~~ly~i~~~~~~l~~~D~~-----~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 113 TRVHACLYFIEPTGHGLKPLDIE-----FMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred CceEEEEEEEeCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHc
Confidence 46899999999874 22222210 1112222 457788999999988655433344455555543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=90.17 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ...++.+++|+|+.+.... +.... .+.....+- ..|.+++.||+|
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~~i~v~D~~~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERI-GEARE--ELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHH-HHHHH--HHHHHHhcHHhcCCCEEEEEECCC
Confidence 457899999986543333211 2357999999999864321 11100 011111111 246788999999
Q ss_pred CCCcCCCcchHHHHHHHHH--Hh-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EI-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...+. .. +....++ .|++++.|+++++..+
T Consensus 113 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 113 LPNAMS----AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCC----HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 865422 233333331 11 1222344 6999999999988754
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=93.25 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
.+..+++++|++|+||||++.+|... ..+++++++..|... .+...++... ...+.. ......+. .....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r-~~a~~ql~~~~~~~~i~---~~~~~~~~---dp~~~ 142 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR-AAAIEQLEEWAKRLGVD---VIKQKEGA---DPAAV 142 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC-HHHHHHHHHHHHhCCeE---EEeCCCCC---CHHHH
Confidence 34568899999999999999999753 457899999998643 2111111110 001111 01111110 01111
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
....+.... ..++|+|||||||.... ...++.+. +..... .....+.+++|+|+......... + ..+
T Consensus 143 ~~~~l~~~~--~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~------~-~~f 213 (272)
T TIGR00064 143 AFDAIQKAK--ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ------A-KVF 213 (272)
T ss_pred HHHHHHHHH--HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH------H-HHH
Confidence 122233222 46799999999996543 23222211 000000 01126788999999866544332 1 122
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
.+.-..+-+|+||.|....- ..+....... ..++...+.++ ++++|..
T Consensus 214 ~~~~~~~g~IlTKlDe~~~~------G~~l~~~~~~--~~Pi~~~~~Gq-~~~dl~~ 261 (272)
T TIGR00064 214 NEAVGLTGIILTKLDGTAKG------GIILSIAYEL--KLPIKFIGVGE-KIDDLAP 261 (272)
T ss_pred HhhCCCCEEEEEccCCCCCc------cHHHHHHHHH--CcCEEEEeCCC-ChHhCcc
Confidence 22224689999999986553 2333333332 24555444443 4665543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-10 Score=91.29 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=61.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.|+||||........... ....+.+++|+|+.+.... .... .+...+.+. ..+.++|.||+|+.
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~--------~~~a~~iilv~D~~~~~s~-~~~~---~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTY--------YRGTHGVIVVYDVTNGESF-VNVK---RWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEeCCCchhHHHHHHHH--------hCCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCEEEEEECcccc
Confidence 46799999965443333211 1235789999999865432 1110 011112121 24568899999997
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... ..+......+..+ .+++ +|+.++.++++++..+
T Consensus 124 ~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 124 ERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred ccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHHHHH
Confidence 65432 2244444444433 4566 7999999999988765
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=90.08 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.++||+|......+.... ....+.+++|+|..+...... .. .+...+.+. ..|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSVTSKQSLEE-LK---PIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEECCCCCcchHHHHHH--------hhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhcCCCCCCCEEEEEE
Confidence 446799999976544333211 224678899999876543211 10 022223332 246789999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+....+.. .+......+. ....++ .|++++.++++++..+
T Consensus 117 K~Dl~~~~~v~--~~~~~~~~~~--~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 117 KCDESHKREVS--SNEGAACATE--WNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred CccccccCeec--HHHHHHHHHH--hCCcEEEeecCCCCCHHHHHHHH
Confidence 99997643321 1222222222 234555 7999999999988764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=94.61 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+...... ..... .+..... ....|.+++.||+|
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~--------~~~~ad~iilV~D~~~~~s~-~~~~~--~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKD--------YFPEVDGIVFLVDAADPERF-QESKE--ELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred EEEEEEECCCCHHHHHHHHH--------HhccCCEEEEEEECCcHHHH-HHHHH--HHHHHHcCccccCCCEEEEEeCCC
Confidence 45679999996433222111 12345889999999864221 11000 0111111 12357888999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC--------------CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN--------------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~--------------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++... ....++ .|++++.|+++++..+
T Consensus 132 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 132 LPGAVS----EEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred CCCCcC----HHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 875322 455666554211 112344 7999999999888654
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=108.83 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=91.7
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|+++|.|..|+|||||+++|... ++ ...+.+. ++.. .|...+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~G---IT~~------------------iga~~v~------ 333 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGG---ITQH------------------IGAYQVE------ 333 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCc---eeee------------------ccEEEEE------
Confidence 458899999999999999999999742 11 1111111 1100 0000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.|+||||......+.. ......|.+++|+|+.......... ..........|
T Consensus 334 ---------~~~~~ItfiDTPGhe~F~~m~~--------rga~~aDiaILVVdAddGv~~qT~e-----~i~~a~~~~vP 391 (787)
T PRK05306 334 ---------TNGGKITFLDTPGHEAFTAMRA--------RGAQVTDIVVLVVAADDGVMPQTIE-----AINHAKAAGVP 391 (787)
T ss_pred ---------ECCEEEEEEECCCCccchhHHH--------hhhhhCCEEEEEEECCCCCCHhHHH-----HHHHHHhcCCc
Confidence 1234578999999765433322 1234578999999998643222111 11222334568
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHH-------hCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~-------~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++++||+|+.... ...+...+.. +....+++ +|++++.|+++|++.+..
T Consensus 392 iIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 392 IIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEEEECccccccC-----HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 89999999996542 2333333322 12234455 899999999999988753
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=103.76 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+.++.||||||.. .+... .+.....+|.+++|+|+.......... ........+.+ .++++||+|
T Consensus 73 ~~~~~~~iDtPGh~---~~~~~-----~~~~~~~~D~~ilVvda~~g~~~qt~~-----~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 73 ENRHYAHVDCPGHA---DYVKN-----MITGAAQMDGAILVVSAADGPMPQTKE-----HILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred CCeEEEEEECCChH---HHHHH-----HHHHHHhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEccC
Confidence 35678999999943 22221 123445789999999998765433221 23344555667 457899999
Q ss_pred CCCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCCc
Q 025133 198 LVSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQV 232 (257)
Q Consensus 198 ~~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~~ 232 (257)
+++.++..+. .+++...++...- ..+++ .|+..+.
T Consensus 140 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 140 QVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 9875443222 2466666766432 24454 6776654
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=88.07 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.+.||+|......+.... ...++.+++|+|......... .. .+...+.+ -..|.++|.
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~--------~~~a~~~ilv~D~t~~~s~~~-~~---~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVY--------YRGAVGAIIVFDVTRPSTFEA-VL---KWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EEEEEEECCCchhhhhhHHHH--------hCCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhcccCCCCCcEEEEE
Confidence 346799999975443333211 235689999999886433211 10 01111111 134678999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+.+... ...+++.++.+..+ ...++ .|++++.++++++..+.
T Consensus 118 NK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 118 NKCDLKKRLA--KDGEQMDQFCKENG-FIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred ECCCcccccc--cCHHHHHHHHHHcC-CceEEEEeCCCCCCHHHHHHHHH
Confidence 9999974322 12455556555543 23455 79999999998877653
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=88.26 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||........... ...++.+++|+|+.+.....+. . .+...+.+. ..|.++|.||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAF--------FRDAMGFLLIFDLTNEQSFLNV-R---NWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCcEEEEEeCc
Confidence 457799999965433332211 2357899999999864432221 0 012222221 24578889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..+....+.+..+ .+++ .|++.+.++++++....
T Consensus 131 Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 131 DLEDQRQV--SEEQAKALADKYG--IPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred cchhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 99865432 1234444444433 3455 89999999999887653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=106.10 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh-cCEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF-ADVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK 195 (257)
.+..+.|+||||..+.... .......+|.+++|+|+.. ....... ........++. +.++++||
T Consensus 82 ~~~~i~liDtpG~~~~~~~--------~~~~~~~aD~~ilVvDa~~~~~~~~~~~-----~~~~~~~~~~~~~iivviNK 148 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKN--------MITGASQADAAVLVVAADDAGGVMPQTR-----EHVFLARTLGINQLIVAINK 148 (425)
T ss_pred CCeEEEEEECCCcccchhh--------HhhchhcCCEEEEEEEcccCCCCCcchH-----HHHHHHHHcCCCeEEEEEEc
Confidence 3567899999995432211 1122456899999999986 2211110 01122233343 35779999
Q ss_pred CCCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+..+ .....+++...++...- ..+++ +|++++.|++++.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 99986321 11223455555554431 23455 8999999987643
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-10 Score=88.00 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++||||........... ....+.+++|+|+.+.... .... .+...+.+. ..+.++|.||+|+
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~-~~l~---~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSY--------YRGAHGIIIVYDVTDQESF-NNVK---QWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEECCCcHhHHHHHHHH--------hCcCCEEEEEEECcCHHHH-HhHH---HHHHHHHHhCCCCCcEEEEEEChhc
Confidence 46699999965433333221 2357899999999875432 1111 011222222 2467889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+......+.. ..+++ .|++++.++++++..+
T Consensus 120 ~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 120 TDKRVV--DYSEAQEFADEL--GIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred ccccCC--CHHHHHHHHHHc--CCeEEEEECCCCcCHHHHHHHH
Confidence 765432 223444444432 23555 8999999999988655
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=93.57 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=95.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+..+++++|++|+||||++.+|... ..+++++++..|.......+.........++.+. ....+. .......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~---~~~~~~---dpa~~v~ 186 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI---AQKEGA---DPASVAF 186 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEE---EeCCCC---CHHHHHH
Confidence 3468999999999999999999764 4578999999886431111110000000111110 000000 0001112
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+... ...++|+|||||||..+ ....++.+. +...... ....+.+++|+|+......+.. ...+.+
T Consensus 187 ~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-------a~~f~~ 257 (318)
T PRK10416 187 DAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-------AKAFHE 257 (318)
T ss_pred HHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-------HHHHHh
Confidence 222222 24679999999999654 333332221 0111100 1234578999999976554332 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.-..+.+|+||.|.... ...+...+... ..+|...+.| .++++|.
T Consensus 258 ~~~~~giIlTKlD~t~~------~G~~l~~~~~~--~~Pi~~v~~G-q~~~Dl~ 302 (318)
T PRK10416 258 AVGLTGIILTKLDGTAK------GGVVFAIADEL--GIPIKFIGVG-EGIDDLQ 302 (318)
T ss_pred hCCCCEEEEECCCCCCC------ccHHHHHHHHH--CCCEEEEeCC-CChhhCc
Confidence 22467899999996543 23333434433 3456544444 4566554
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-10 Score=88.39 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--HhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l~~~~vivlNK~D~ 198 (257)
..+.|.||||........... ....+.+++|+|+...... .... .+...+.+ -..|.++|.||+|+
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~v~v~d~~~~~s~-~~l~---~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAY--------YRGAQACILVFSTTDRESF-EAIE---SWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHH--------hcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCEEEEEEChhc
Confidence 457899999964433332211 2356888999998764432 1110 01111111 13577999999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++.+. ..++.....+..+ .+++ .|++.+.++++++..+
T Consensus 119 ~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 119 LDQAVI--TNEEAEALAKRLQ--LPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred ccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 875442 1233444444332 3555 7889999999987654
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-10 Score=91.89 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+...... +.... +...+.+. ..|.++|.||+|
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~s~-~~~~~---~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHA--------YYRDAHALLLLYDITNKASF-DNIRA---WLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHH--------HccCCCEEEEEEECCCHHHH-HHHHH---HHHHHHHhCCCCCcEEEEEEccc
Confidence 34779999995432222211 12346899999999875332 11110 12222222 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+. ..++.....+..+ .+++ .|++.+.++++++..+.
T Consensus 118 l~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 118 MSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred chhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9754332 1233334333322 3555 79999999999887764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=95.99 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=100.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee--eccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~~~ 107 (257)
..+++++|+.|+||||++.+|... ..+++++++..|+.. ++.-.++.... +. .|+-+ +....++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~ya----------e~-lgipv~v~~d~~~L 308 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYV----------KT-IGFEVIAVRDEAAM 308 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHh----------hh-cCCcEEecCCHHHH
Confidence 358999999999999999999753 457899999999764 32222222110 00 11111 2234556
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+..+.. ..++|+|||||+|-.. ....++.+. ..+. ....+.+++|+|+......+.. +...+.. -
T Consensus 309 ~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~--~~lk-~~~PdevlLVLsATtk~~d~~~------i~~~F~~-~ 377 (436)
T PRK11889 309 TRALTYFKE-EARVDYILIDTAGKNYRASETVEEMI--ETMG-QVEPDYICLTLSASMKSKDMIE------IITNFKD-I 377 (436)
T ss_pred HHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHH--HHHh-hcCCCeEEEEECCccChHHHHH------HHHHhcC-C
Confidence 666655432 2368999999999544 333333221 1121 2234567888998765544322 1222222 2
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
..+-+|++|.|.... ...+....... ..+|..-+.|+.=.++|.
T Consensus 378 ~idglI~TKLDET~k------~G~iLni~~~~--~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 378 HIDGIVFTKFDETAS------SGELLKIPAVS--SAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCCEEEEEcccCCCC------ccHHHHHHHHH--CcCEEEEeCCCCCCcchh
Confidence 458999999998764 34444444433 235555556554444443
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=106.18 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=70.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc-ccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI-GVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.|++++.|.+|+|||||+++|... .+...++|... .+....+. .... .++|........
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~------~v~~~e~ggiTq~iG~~~v~----------~~~~--~~~~~~~~~~~~ 63 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGS------AVAKREAGGITQHIGATEIP----------MDVI--EGICGDLLKKFK 63 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc------ccccccCCceecccCeeEee----------eccc--cccccccccccc
Confidence 57899999999999999999999842 22333333200 00000000 0000 000000000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
+ +...+.+.|+||||......+.. ......|.+++|+|+.......... ....+.+...|
T Consensus 64 ------v-~~~~~~l~~iDTpG~e~f~~l~~--------~~~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vp 123 (590)
T TIGR00491 64 ------I-RLKIPGLLFIDTPGHEAFTNLRK--------RGGALADLAILIVDINEGFKPQTQE-----ALNILRMYKTP 123 (590)
T ss_pred ------c-ccccCcEEEEECCCcHhHHHHHH--------HHHhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCC
Confidence 0 01124588999999643333221 1234678999999998643322211 12233444668
Q ss_pred CEEEEeCCCCCC
Q 025133 189 DVVILNKVDLVS 200 (257)
Q Consensus 189 ~vivlNK~D~~~ 200 (257)
.++++||+|+.+
T Consensus 124 iIVv~NK~Dl~~ 135 (590)
T TIGR00491 124 FVVAANKIDRIP 135 (590)
T ss_pred EEEEEECCCccc
Confidence 899999999974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=95.38 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||......+.... ....+.+++|+|............ .+...+.+ ...+.++|.||+
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~~vlv~D~~~~~sf~~~~~---~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSY--------YRNAQGIILVYDVTRRETFTNLSD---VWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 457899999976554443221 234689999999987543221100 01111111 123567889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+...... ..+......+.. ...++ .|++.+.++++++..+...
T Consensus 131 Dl~~~~~i--~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 131 DRESERDV--SREEGMALAKEH--GCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred cccccCcc--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99765432 123333333332 23455 7999999999988777533
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=93.79 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=61.5
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D 197 (257)
.+.|+||+|......+... ....++.+++|+|+.......... .+...+.+ ...|.++|+||+|
T Consensus 48 ~l~i~D~~G~~~~~~~~~~--------~~~~ad~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKL--------SIQNSDAFALVYAVDDPESFEEVE----RLREEILEVKEDKFVPIVVVGNKAD 115 (198)
T ss_pred EEEEEECCCchhhhHHHHH--------HhhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEccc
Confidence 4679999997654333221 123578999999998653322110 01111111 2467899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+...+.. ...+...+.. .......++ .|++++.|+++++.....
T Consensus 116 l~~~~~~-v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 116 SLEEERQ-VPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred ccccccc-ccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 9764221 1111222222 122334455 899999999988877643
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=108.74 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=90.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.|+++|.|..|+|||||+++|.... .+ ..+.+. ++... +..... ....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~----~~--~~e~~G---iTq~i------~~~~v~-~~~~-------------- 291 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ----IA--QKEAGG---ITQKI------GAYEVE-FEYK-------------- 291 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc----Cc--cccCCc---ccccc------ceEEEE-EEec--------------
Confidence 578999999999999999999998421 11 111110 00000 000000 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||......... ......|.+++|+|+.......... ....+.....|.
T Consensus 292 --------~~~~kItfiDTPGhe~F~~mr~--------rg~~~aDiaILVVDA~dGv~~QT~E-----~I~~~k~~~iPi 350 (742)
T CHL00189 292 --------DENQKIVFLDTPGHEAFSSMRS--------RGANVTDIAILIIAADDGVKPQTIE-----AINYIQAANVPI 350 (742)
T ss_pred --------CCceEEEEEECCcHHHHHHHHH--------HHHHHCCEEEEEEECcCCCChhhHH-----HHHHHHhcCceE
Confidence 1235688999999643322221 1234578999999998653321110 112233345688
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHh-------CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEI-------NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~-------~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+.... ...+...+... ....+++ .|+.++.|+++|+..+.
T Consensus 351 IVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 351 IVAINKIDKANAN-----TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred EEEEECCCccccC-----HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 9999999997642 23344444322 2224555 89999999999998773
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-10 Score=92.98 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.+++++|++|+|||||++.|+..... ..+....|. + . +++
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~---~~~~~~~g~-i--------------~-----------i~~----------- 79 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTK---QNISDIKGP-I--------------T-----------VVT----------- 79 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccc---Ccccccccc-E--------------E-----------EEe-----------
Confidence 37899999999999999999853111 111111111 0 0 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV- 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi- 191 (257)
..+..+.++||||.. ....+ ....+|.+++|+|+.......+.. +...+...+.+.++
T Consensus 80 -----~~~~~i~~vDtPg~~--~~~l~---------~ak~aDvVllviDa~~~~~~~~~~-----i~~~l~~~g~p~vi~ 138 (225)
T cd01882 80 -----GKKRRLTFIECPNDI--NAMID---------IAKVADLVLLLIDASFGFEMETFE-----FLNILQVHGFPRVMG 138 (225)
T ss_pred -----cCCceEEEEeCCchH--HHHHH---------HHHhcCEEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeEEE
Confidence 123557899999843 22221 234579999999998654332211 22233334456555
Q ss_pred EEeCCCCCCcCC-CcchHHHHHH-HHHHhCCCCEEE-EeecCC
Q 025133 192 ILNKVDLVSPER-SGDSLDELEK-EIHEINSLAHVI-RSVRCQ 231 (257)
Q Consensus 192 vlNK~D~~~~~~-~~~~l~~~~~-~l~~~~~~a~i~-~s~~~~ 231 (257)
|+||+|+++..+ .......++. ...+..++.+++ +|+.+.
T Consensus 139 VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 139 VLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999985432 1122233333 223356788888 665553
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=91.23 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVS 200 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~~ 200 (257)
+.+.||+|..........+ ....+.+++|+|....... +... .+...+.+. ..|.++|.||+|+..
T Consensus 52 l~i~D~~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 52 LGIWDTAGSERYEAMSRIY--------YRGAKAAIVCYDLTDSSSF-ERAK---FWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEECCCchhhhhhhHhh--------cCCCCEEEEEEECCCHHHH-HHHH---HHHHHHHhcCCCCCEEEEEEcccccc
Confidence 5588999975433332211 2257899999999765332 1110 022223333 356789999999875
Q ss_pred cCCC--cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERS--GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~--~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+. .-....+....... ...++ +|++++.++++++..+.
T Consensus 120 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 120 QDRSLRQVDFHDVQDFADEI--KAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cccccCccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 4311 01123333433332 24555 79999999998887664
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=96.16 Aligned_cols=46 Identities=26% Similarity=0.277 Sum_probs=31.4
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+.++|+||+|+.+.++ .+ . +.. .+. -+.+|+.++.++++++..++.
T Consensus 178 p~iiV~NK~Dl~~~~~----~~---~-~~~-~~~-~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 178 PCLYVYNKIDLISIEE----LD---L-LAR-QPN-SVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eEEEEEECccCCCHHH----HH---H-Hhc-CCC-EEEEcCCCCCCHHHHHHHHHH
Confidence 6678999999987543 22 2 222 222 345899999999999887643
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-10 Score=100.34 Aligned_cols=99 Identities=24% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.||||||.. .+.. ..+.....+|.+++|+|+.......... ....+...+.+. ++++||+|+
T Consensus 74 ~~~i~~iDtPGh~---~f~~-----~~~~~~~~~d~~llVvd~~~g~~~~t~~-----~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 KRHYAHVDCPGHA---DYVK-----NMITGAAQMDGAILVVAATDGPMPQTRE-----HILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CcEEEEEECCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCCchhHHH-----HHHHHHHcCCCEEEEEEEecCC
Confidence 4578999999943 2222 1123345689999999998754332211 223344556674 578999999
Q ss_pred CCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCC
Q 025133 199 VSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~ 231 (257)
.+.+++.+. .+++...++.... ..+++ .|+.++
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 865443222 2356666666542 24555 788876
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=96.23 Aligned_cols=164 Identities=22% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+..-..++++|||++|||||+++|.+. +.-+-..+|.+ ...... +.+
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt----~seva~y~FTT-l~~VPG-------------~l~-------------- 106 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNT----KSEVADYPFTT-LEPVPG-------------MLE-------------- 106 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCC----CccccccCcee-cccccc-------------eEe--------------
Confidence 3445568999999999999999999953 22233333332 100000 000
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh----h---c-----cC
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK----Y---R-----HL 175 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~----~---~-----~~ 175 (257)
..+.++.++|+||+.+......... ...+.....+|.++.|+|+.......+. . . .+
T Consensus 107 ----------Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~ 175 (365)
T COG1163 107 ----------YKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRP 175 (365)
T ss_pred ----------ecCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCC
Confidence 3467788999999887654433211 2345566788999999999866542211 1 0 00
Q ss_pred C------------------C---h---------------------------hHHH-----HHHhhcCEEEEeCCCCCCcC
Q 025133 176 S------------------S---Y---------------------------PEAI-----HQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 176 ~------------------~---~---------------------------~~~~-----~ql~~~~vivlNK~D~~~~~ 202 (257)
. . . ..+. .....|.+.|+||+|+.+.+
T Consensus 176 p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e 255 (365)
T COG1163 176 PDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE 255 (365)
T ss_pred CceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH
Confidence 0 0 0 0011 11234788999999999854
Q ss_pred CCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+ +..+.+.. --+++|++.+.++++|...++..
T Consensus 256 ~----~~~l~~~~------~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 256 E----LERLARKP------NSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred H----HHHHHhcc------ceEEEecccCCCHHHHHHHHHHh
Confidence 3 33333322 23678999999999988877544
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.8e-10 Score=86.80 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=61.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++||+|..........+ ...++.+++|+|..+........ .+...+.+. ..|.++++||+|+
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIY--------YRDADGAILVYDITDADSFQKVK----KWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEECCchHHHHHhhHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECccc
Confidence 47799999954433332211 13468999999987654321110 012222222 3577889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
....+. ..+.+....+..+ ..-+..|++++.++++++...
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 118 ERQRVV--SKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred ccccCC--CHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHH
Confidence 865432 1234444444332 222348999999999888764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=86.18 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||||.......... ....++.+++|+|+...... .... .+...+.+. ..|.++|.||+|
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTA--------YYRGAMGIILVYDITDEKSF-ENIR---NWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhCCCCEEEEEEECcCHHHH-HhHH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 34679999996543333221 12357999999999764432 2211 012222222 246688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+... .+++ .|++++.++++++...
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 120 MEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred cccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9864332 2344444444432 2445 8999999999887654
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=94.84 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=58.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHh-hcCEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIA-FADVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~-~~~vivlNK 195 (257)
.++.+.|+||||....... ........|.+++|+|+...... +................. .+.++++||
T Consensus 75 ~~~~i~liDtpG~~~~~~~--------~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK 146 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPN--------MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK 146 (219)
T ss_pred CCeEEEEEECCChHHHHHH--------HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 4567899999996432111 11234468999999999863110 000000000111223333 345679999
Q ss_pred CCCCCcC----CCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChh
Q 025133 196 VDLVSPE----RSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 196 ~D~~~~~----~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
+|+.... ......+.+...++.... ..+++ +|++++.|++
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 147 MDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9998431 111223444444555432 24455 8999999886
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=90.50 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+...... .....+|.+++|+|+.......... +.......+.|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~--------~~l~~aD~~IlVvd~~~g~~~~~~~-----~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVE--------RSLSVLDGAILVISAVEGVQAQTRI-----LWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchHHHHH--------HHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECccc
Confidence 456789999999876433322 1233568999999998754322111 222334456788999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
...+. .+.++++++.+
T Consensus 129 ~~a~~-~~~~~~i~~~~ 144 (237)
T cd04168 129 AGADL-EKVYQEIKEKL 144 (237)
T ss_pred cCCCH-HHHHHHHHHHH
Confidence 86532 23344444433
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=89.54 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.+.||+|......+... ....++.+|+|+|......... +...+..+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDG--------YYIGGQCAIIMFDVTSRVTYKN-------VPNWHRDLVRVCGNIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhhccccHH--------HhcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence 45779999997543322221 1235789999999986543211 11122222 4677888999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+..... .....+ +.+.+ ..+++ .|++.+.++++++.....
T Consensus 114 ~Dl~~~~~----~~~~~~-~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 114 VDIKDRKV----KAKQIT-FHRKK-NLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred hhcccccC----CHHHHH-HHHHc-CCEEEEEeCCCCCChHHHHHHHHH
Confidence 99974332 112222 22222 23455 899999999999887643
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=85.87 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH------HhhcCEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ------IAFADVVI 192 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q------l~~~~viv 192 (257)
..+.|.||||......+.... ....+.+++++|....... .... ....... -..|.++|
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~~~~~piilv 120 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFAVDDSQSFQNLSNW-----KKEFIYYADVKEPESFPFVVL 120 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHhHHHH-----HHHHHHhcccccCCCCcEEEE
Confidence 456789999965433332211 1245778888877654321 1111 0111111 12467899
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.||+|+..... ..+++.++.++.+...-+..|++++.++.+++...
T Consensus 121 ~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 121 GNKNDIPERQV---STEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred EECcccccccc---CHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999874321 24556666665543323347999999999887654
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-10 Score=102.61 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+.+++||||||.. .+.... ......+|.+++|+|+..+....... .......++. +.++++||+|
T Consensus 105 ~~~~i~~iDTPGh~---~f~~~~-----~~~l~~aD~allVVDa~~G~~~qt~~-----~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHE---QYTRNM-----ATGASTCDLAILLIDARKGVLDQTRR-----HSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcH---HHHHHH-----HHHHhhCCEEEEEEECCCCccccchH-----HHHHHHHhCCCceEEEEEeec
Confidence 35679999999932 232211 12346789999999998764332110 1122333443 4577999999
Q ss_pred CCCcCCCcchHHHHHHHH----HHh--CCCCEEE-EeecCCcChhhh
Q 025133 198 LVSPERSGDSLDELEKEI----HEI--NSLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l----~~~--~~~a~i~-~s~~~~~~~~~l 237 (257)
+.+.++ ..++.+...+ +.. .+..+++ +|++++.++..+
T Consensus 172 ~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSE--EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchh--HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 985332 1233333333 332 2345665 899999888654
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-10 Score=91.24 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~ 196 (257)
+..+.++||||......+... ....++.+++|+|+...... ...... +..... ....|.++|+||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~--------~~~~a~~ii~V~D~s~~~s~-~~~~~~--l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVN--------YYAEAHGLVFVVDSSDDDRV-QEVKEI--LRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHcCCCEEEEEEECCchhHH-HHHHHH--HHHHHcCccccCCcEEEEEeCC
Confidence 355789999997544333221 12457899999999865321 111000 011111 1245789999999
Q ss_pred CCCCcCCCcchHHHHHHHH--HHh----CCCCEEE-EeecCC------cChhhhhcC
Q 025133 197 DLVSPERSGDSLDELEKEI--HEI----NSLAHVI-RSVRCQ------VDLSEVLNC 240 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l--~~~----~~~a~i~-~s~~~~------~~~~~l~~~ 240 (257)
|+..... ..++...+ ..+ +....++ .|++++ .|+.+-++.
T Consensus 111 Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~w 163 (167)
T cd04161 111 DKKNALL----GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRW 163 (167)
T ss_pred CCcCCCC----HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHH
Confidence 9876543 23333322 122 1112344 677776 567655543
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-10 Score=86.26 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.++.++|+||.......... .....+.+++|+|+.........................+.++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRL--------YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHH--------HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 456889999997654433221 223568999999999765432221000000111123345789999999998
Q ss_pred CcCCCcchHHHH--HHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 200 SPERSGDSLDEL--EKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 200 ~~~~~~~~l~~~--~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
..... ... ..... .....+++ .|+..+.++.+++..
T Consensus 116 ~~~~~----~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 116 EERVV----SEEELAEQLA-KELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred cccch----HHHHHHHHHH-hhcCCcEEEEecCCCCChHHHHHH
Confidence 76542 211 12222 23344555 788888899888764
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=84.45 Aligned_cols=148 Identities=21% Similarity=0.249 Sum_probs=82.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+++++|++|+||||++..+... ..+.+++++..|+.. ......+... ...+..+ ... ....+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~-~~~~~~l~~~~~~~~~~~---~~~-------~~~~~~~~~ 70 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR-PAAIEQLRVLGEQVGVPV---FEE-------GEGKDPVSI 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC-hHHHHHHHHhcccCCeEE---Eec-------CCCCCHHHH
Confidence 5789999999999999998753 457899999988753 2211111110 0111111 000 111122222
Q ss_pred HHHHHH--hcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQ--RKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~--~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
+.+.+. ...++++++|||+|... .......+. .+......+.+++|+|+.......+. ...+..+.+
T Consensus 71 ~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~~~~~~------~~~~~~~~~- 140 (173)
T cd03115 71 AKRAIEHAREENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQDAVNQ------AKAFNEALG- 140 (173)
T ss_pred HHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCChHHHHH------HHHHHhhCC-
Confidence 212111 24578999999999653 223333221 12223347889999999754443321 122223333
Q ss_pred cCEEEEeCCCCCCcC
Q 025133 188 ADVVILNKVDLVSPE 202 (257)
Q Consensus 188 ~~vivlNK~D~~~~~ 202 (257)
.+.+|+||.|.....
T Consensus 141 ~~~viltk~D~~~~~ 155 (173)
T cd03115 141 ITGVILTKLDGDARG 155 (173)
T ss_pred CCEEEEECCcCCCCc
Confidence 578999999987653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=85.47 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=60.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+++.|++|......+.. .....+|.+++|+|+...... .. +.....++ ..|.++|+||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~--------~~~~~~d~~llv~d~~~~~s~-~~------~~~~~~~~~~~~~~p~iiv~NK~D 119 (169)
T cd01892 55 YLILREVGEDEVAILLND--------AELAACDVACLVYDSSDPKSF-SY------CAEVYKKYFMLGEIPCLFVAAKAD 119 (169)
T ss_pred EEEEEecCCcccccccch--------hhhhcCCEEEEEEeCCCHHHH-HH------HHHHHHHhccCCCCeEEEEEEccc
Confidence 356778888653322111 112468999999999765332 21 11222222 467899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..+. .........+..+....+..|+..+.++++++.....
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 163 (169)
T cd01892 120 LDEQQQR--YEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLAT 163 (169)
T ss_pred ccccccc--cccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHH
Confidence 8754321 0111222233333222366899999999998876643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-10 Score=90.56 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~ 196 (257)
+..+.+.||+|..........+ ...++.+++|+|+++......... .+...+.+ . ..|.++|.||+
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~--------~~~ad~ii~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~ 124 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHY--------YTNTQGLIFVVDSNDRDRIDEARE---ELHRMLNEDELRDAVILVFANKQ 124 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH---HHHHHhhCHhhcCCcEEEEEeCc
Confidence 3557899999986554443322 234789999999986432111000 01111111 1 24678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...+.. . .....++ .|++++.|+++++..+
T Consensus 125 Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 125 DLPDAMK----AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CcccCCC----HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9865422 2333333321 1 1112333 7999999999988754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=89.04 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH--HH---HhhcCEEEEe
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQ---IAFADVVILN 194 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~q---l~~~~vivlN 194 (257)
+..+.++||||.......... .++.. ++.+|+|+|+......+...... +...+ .+ -..|.+++.|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~-----~~~~~--~~~vV~VvD~~~~~~~~~~~~~~--l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLE-----TLKNS--AKGIVFVVDSATFQKNLKDVAEF--LYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred CceEEEEECCCCHHHHHHHHH-----HHhcc--CCEEEEEEECccchhHHHHHHHH--HHHHHHHHhhccCCCCEEEEec
Confidence 355889999996543322211 11111 48999999999874322221100 11111 11 1457788999
Q ss_pred CCCCCCcCC
Q 025133 195 KVDLVSPER 203 (257)
Q Consensus 195 K~D~~~~~~ 203 (257)
|+|+.....
T Consensus 118 K~Dl~~a~~ 126 (203)
T cd04105 118 KQDLFTAKP 126 (203)
T ss_pred chhhcccCC
Confidence 999987654
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-10 Score=90.55 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~D 197 (257)
..+.++||+|..........+ ...++.+|+|+|+.+.... ..... .+...+.. . ..+.++|.||.|
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~iI~v~D~t~~~s~-~~~~~--~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHY--------YQNTNGLIFVVDSNDRERI-GDARE--ELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHH-HHHHH--HHHHHHhCHhhcCCCEEEEEeCCC
Confidence 457899999975544333221 2357899999999764321 11100 01111111 1 246788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHh-CCCC--EEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEI-NSLA--HVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~-~~~a--~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... ..++...+... .+.. .++ .|++++.|+.+++..+.
T Consensus 130 l~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 130 LPNAMS----TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCCCC----HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 865322 23333333211 0111 233 58999999999988764
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=90.97 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=95.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|+.|+||||++.+|... ..+.+++++..|+.. .+....+..... .++.+ ..+....++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gAveQLk~yae~lgvpv----------~~~~dp~dL 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGAVEQFQGYADKLDVEL----------IVATSPAEL 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccHHHHHHHHhhcCCCCE----------EecCCHHHH
Confidence 4568999999999999999999753 457899999999764 322222222111 11111 112345566
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
...+..+-. ..++|+|||||+|.... ...++.+. .+......+.+++|+++........ ..+.+.
T Consensus 274 ~~al~~l~~-~~~~D~VLIDTAGr~~~d~~~l~EL~---~l~~~~~p~~~~LVLsag~~~~d~~---------~i~~~f~ 340 (407)
T PRK12726 274 EEAVQYMTY-VNCVDHILIDTVGRNYLAEESVSEIS---AYTDVVHPDLTCFTFSSGMKSADVM---------TILPKLA 340 (407)
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCCccCHHHHHHHH---HHhhccCCceEEEECCCcccHHHHH---------HHHHhcC
Confidence 666655431 24689999999996542 33333221 1122234456677888754433322 122222
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
-..+-+|++|.|.... ...+-......+ .++..-+.|+
T Consensus 341 ~l~i~glI~TKLDET~~------~G~~Lsv~~~tg--lPIsylt~GQ 379 (407)
T PRK12726 341 EIPIDGFIITKMDETTR------IGDLYTVMQETN--LPVLYMTDGQ 379 (407)
T ss_pred cCCCCEEEEEcccCCCC------ccHHHHHHHHHC--CCEEEEecCC
Confidence 2357899999998754 344444443322 3454444443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=98.68 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=85.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..+++++++..|... ......+... ...++.+ .. .....+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R-~aa~eQL~~la~~~gvp~---~~-------~~~~~d~ 162 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR-PAAYDQLKQLAEKIGVPF---YG-------DPDNKDA 162 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC-HHHHHHHHHHHHHcCCcE---Ee-------cCCccCH
Confidence 3458899999999999999999764 458899999998754 2111111110 0001100 00 0011233
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+.+......++|||||+|... ....++.+. .+......+.+++|+|+.......+. ...+...-
T Consensus 163 ~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq~av~~-------a~~F~~~l 232 (437)
T PRK00771 163 VEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQQAKNQ-------AKAFHEAV 232 (437)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccHHHHHH-------HHHHHhcC
Confidence 33333333333346999999999554 344444332 22334457889999999876433221 11122111
Q ss_pred hcCEEEEeCCCCCCc
Q 025133 187 FADVVILNKVDLVSP 201 (257)
Q Consensus 187 ~~~vivlNK~D~~~~ 201 (257)
..+-+|+||.|....
T Consensus 233 ~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 233 GIGGIIITKLDGTAK 247 (437)
T ss_pred CCCEEEEecccCCCc
Confidence 246889999997644
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=98.85 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE-EEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v-ivlNK~D~ 198 (257)
+.++.||||||.. .+... .......+|.+++|+|+.......... ....+...+.+.+ +++||+|+
T Consensus 74 ~~~i~~iDtPG~~---~f~~~-----~~~~~~~aD~~llVVDa~~g~~~qt~~-----~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 KRHYAHVDCPGHA---DYVKN-----MITGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CeEEEEEECCCHH---HHHHH-----HHhhhccCCEEEEEEECCCCCchHHHH-----HHHHHHHcCCCEEEEEEeecCC
Confidence 4678999999973 23221 123456789999999998754432211 2333444556766 47999999
Q ss_pred CCcCCCcc-hHHHHHHHHHHhC---CCCEEE-EeecCCc
Q 025133 199 VSPERSGD-SLDELEKEIHEIN---SLAHVI-RSVRCQV 232 (257)
Q Consensus 199 ~~~~~~~~-~l~~~~~~l~~~~---~~a~i~-~s~~~~~ 232 (257)
.+.++..+ ...++...++.+. ...+++ .|+..+.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence 86433211 2235556665542 234555 6777653
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=87.63 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=59.8
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+.++||||......+.+.. ....+.+++|+|..+........ .+...+.+. ..|.+++.||+|
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~vlv~~~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELY--------IKSGQGFLLVYSVTSEASLNELG----ELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEEeCCCcccchhhhHHH--------HhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCCEEEEEEChh
Confidence 46699999976544433322 12356788899887643321110 012222221 346688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... ..+......+..+ ..+++ .|++++.++++++...
T Consensus 118 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 118 LEDDRQV--SREDGVSLSQQWG-NVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ccccCcc--CHHHHHHHHHHcC-CceEEEeeCCCCCCHHHHHHHH
Confidence 8765432 1233333333332 23455 8999999999887655
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-10 Score=98.07 Aligned_cols=156 Identities=23% Similarity=0.283 Sum_probs=96.6
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC--CCcccccchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~--~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
.+..+.+.|+|.++|+.|||||||+++|..+ ++.-++ |.+ .+.+.... .+
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a-------------~L-------- 222 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSA-------------HL-------- 222 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhc-------------cC--------
Confidence 4456778999999999999999999999842 111111 222 22222211 11
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+..+++.||.|+.. |..+.+.| ...+.+....|.++.|+|.+......... ....
T Consensus 223 ---------------psg~~vlltDTvGFisdLP~~LvaAF--~ATLeeVaeadlllHvvDiShP~ae~q~e----~Vl~ 281 (410)
T KOG0410|consen 223 ---------------PSGNFVLLTDTVGFISDLPIQLVAAF--QATLEEVAEADLLLHVVDISHPNAEEQRE----TVLH 281 (410)
T ss_pred ---------------CCCcEEEEeechhhhhhCcHHHHHHH--HHHHHHHhhcceEEEEeecCCccHHHHHH----HHHH
Confidence 1245688999999664 66666655 56788889999999999998754432221 1334
Q ss_pred HHHHHhhcC-------EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 181 AIHQIAFAD-------VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 181 ~~~ql~~~~-------vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+.|+.-++ +=|=||+|..+.+- .. -+...+-+|+.++-|++++++...
T Consensus 282 vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~-E~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 282 VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE-EKNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHhcCCCcHHHHhHHHhhccccccccccC------------cc-ccCCccccccccCccHHHHHHHHH
Confidence 456665543 22448888665421 00 122234567777777777776653
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=85.87 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||||......+... .....+.+++|+|..+.... +.... .+...+.+. ..|.++|.||+|+
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~-~~~~~--~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPL--------SYPDTDVFLICFSVDSPASF-ENVKE--KWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcccchhchh--------hcCCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHhhCCCCCEEEEecChhh
Confidence 45779999997544332221 12357899999999865332 11100 011122221 3577889999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .-..++..+..+..+. ..++ .|++++.++++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGA-VKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHcCC-cEEEEecCCCCCCHHHHHHHHH
Confidence 763210 0112233334444332 2444 79999999999987653
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=84.65 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||||.......... ....++.+++|+|..+.... .... .+.....+. ..+.++|.||+|
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTY-NHLS---SWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 34679999996543333221 12357899999999865432 1110 012222222 235688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++.+. ..+....+.+.. ..+++ .|++++.|+.+++...
T Consensus 119 l~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 119 LEAQRDV--TYEEAKQFADEN--GLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred cccccCc--CHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 9765432 234444444433 23555 7999999999876543
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-09 Score=85.04 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|.......... ....++.+++|+|............ .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 117 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPL--------SYPDVDVLLICYAVDNPTSLDNVED---KWFPEVNHFCPGTPIMLVGLKTDL 117 (187)
T ss_pred EEEEEEECCCchhHHHHHHH--------hCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence 34679999996543332221 1235789999999986433211100 011111111 3477889999998
Q ss_pred CCcCCC--cchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 199 VSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~--~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
...... .-...+..+..+..+...-+..|++++.++++++....
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 163 (187)
T cd04132 118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAI 163 (187)
T ss_pred hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHH
Confidence 764310 01123444444443322223478999999998877653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=91.63 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+.++.++||||..+...... .....+|.+++|+|+.......... ......+.+.|.++++||+|+
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~--------~~l~~aD~~i~Vvd~~~g~~~~~~~-----~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETR--------AALRAADAALVVVSAQSGVEVGTEK-----LWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHH--------HHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCcc
Confidence 356788999999764322221 1223578999999998754322110 122334556788999999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 865
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=88.31 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=108.5
Q ss_pred EccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeee
Q 025133 14 IDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEE 90 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~ 90 (257)
++++.+.+.+...+ ..+.+.+++.|++|+||||++..|... ..+.+++++..|... .+.-..+..... .+..+
T Consensus 58 ~~~l~~~~~~~~~~-~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~~~~~~~-- 133 (270)
T PRK06731 58 LEDMSSHFNTENVF-EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEV-- 133 (270)
T ss_pred hcccEEeeCCcccc-cCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhhhcCceE--
Confidence 56666666544333 336679999999999999999999764 346789999988653 222222222110 01100
Q ss_pred eeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHH
Q 025133 91 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI 169 (257)
Q Consensus 91 ~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~ 169 (257)
..+....++...+..+- +..++|++||||+|-.. ....++.+. . +......+.+++|+||.......
T Consensus 134 --------~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~--~-~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 134 --------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMI--E-TMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred --------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHH--H-HHhhhCCCeEEEEEcCccCHHHH
Confidence 11122345555555543 23578999999999654 233333221 1 11223445689999998655443
Q ss_pred hhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 170 DKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 170 ~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
... ...+.. -..+-++++|.|.... ...+....... ..+|..-+.|+.=.++|
T Consensus 202 ~~~------~~~f~~-~~~~~~I~TKlDet~~------~G~~l~~~~~~--~~Pi~~it~Gq~vp~di 254 (270)
T PRK06731 202 IEI------ITNFKD-IHIDGIVFTKFDETAS------SGELLKIPAVS--SAPIVLMTDGQDVKKNI 254 (270)
T ss_pred HHH------HHHhCC-CCCCEEEEEeecCCCC------ccHHHHHHHHH--CcCEEEEeCCCCCCcch
Confidence 221 122222 2468999999998764 24444444433 23555555554333333
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=86.47 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||+|......+.. ......+.+++++|............ .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~~~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 117 (175)
T cd01870 49 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred EEEEEEeCCCchhhhhccc--------cccCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhc
Confidence 4578999999743322211 11245678888888875432111100 011222221 4577889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
....... -.....+...+..+...-+..|++.+.|+++++..+
T Consensus 118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHH
Confidence 7543210 011223333333333323338899999999988765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=86.68 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+-++||||..+...+.... ....+.+++|+|....... +.... +...+.+. ..|.++|.||+|
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~--------~~~~d~iilv~D~s~~~s~-~~~~~---~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQY--------MRTGQGFLCVYSITSRSSF-EEIAS---FREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred EEEEEeCCCCccchhhHHHH--------hhcCCEEEEEEECCCHHHH-HHHHH---HHHHHHHhcCCCCCCEEEEEECcc
Confidence 35589999977655544322 2246899999999865431 11110 11122221 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... .........+..+ .+++ +|++++.|+.+++....
T Consensus 122 l~~~~~i--~~~~~~~~~~~~~--~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 122 LDSERQV--STGEGQELAKSFG--IPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred ccccccc--CHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHH
Confidence 8654322 1223333333332 3555 79999999998877664
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=102.81 Aligned_cols=131 Identities=24% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcc---cccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE---IGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~---~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
..+.|++.+.|..|+|||||+++|... .+...++|.. ++.+...... ..-..|
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~------~v~~~~~g~itq~ig~~~~~~~~----------~~~~~~-------- 58 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGT------AVAAKEAGGITQHIGATEVPIDV----------IEKIAG-------- 58 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCc------ccccCCCCceEEeeceeeccccc----------cccccc--------
Confidence 467899999999999999999999742 2333333320 0100000000 000000
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
.....+. .+..-+.+.|+||||......+.. ......|.+++|+|+.......... ....+...
T Consensus 59 ~~~~~~~---~~~~~~~i~~iDTPG~e~f~~~~~--------~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~ 122 (586)
T PRK04004 59 PLKKPLP---IKLKIPGLLFIDTPGHEAFTNLRK--------RGGALADIAILVVDINEGFQPQTIE-----AINILKRR 122 (586)
T ss_pred eeccccc---cccccCCEEEEECCChHHHHHHHH--------HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHc
Confidence 0000000 000113478999999754433322 1234578999999998743222111 12233445
Q ss_pred hhcCEEEEeCCCCC
Q 025133 186 AFADVVILNKVDLV 199 (257)
Q Consensus 186 ~~~~vivlNK~D~~ 199 (257)
..|.++++||+|+.
T Consensus 123 ~vpiIvviNK~D~~ 136 (586)
T PRK04004 123 KTPFVVAANKIDRI 136 (586)
T ss_pred CCCEEEEEECcCCc
Confidence 67889999999986
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-09 Score=95.84 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~ 198 (257)
+.++.|+||||.. .+.. ........+|.+++|+|+......... .....+...+.+.++ ++||+|+
T Consensus 74 ~~~i~~iDtPGh~---~f~~-----~~~~~~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 74 NRHYAHVDCPGHA---DYVK-----NMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CcEEEEEECCCHH---HHHH-----HHHhhhccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence 4578999999963 2222 122345578999999999875332211 022233444556664 6999999
Q ss_pred CCcCCCcchH-HHHHHHHHHhCC---CCEEE-EeecCCc
Q 025133 199 VSPERSGDSL-DELEKEIHEINS---LAHVI-RSVRCQV 232 (257)
Q Consensus 199 ~~~~~~~~~l-~~~~~~l~~~~~---~a~i~-~s~~~~~ 232 (257)
.+.++..+.+ .+++..++.+.- ..+++ .|+..+.
T Consensus 141 ~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccc
Confidence 8644321112 255666665431 24555 6777763
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=87.48 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=61.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEeC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlNK 195 (257)
.+.|+||+|......+.... ....+.+++|+|..+.... +... .+...+.+. ..|.++|.||
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQW--------IREGEGFILVYSITSRSTF-ERVE---RFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEECCCchhhHHHHHHH--------HHhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHHhcccCCCCCEEEEEEC
Confidence 46789999975444333211 2346899999998765432 1110 012222221 2467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+....+.. ........+..+ .+.+ .|++.+.|+++++....-
T Consensus 116 ~Dl~~~~~v~--~~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 116 CDKVYEREVS--TEEGAALARRLG--CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred hhccccCccC--HHHHHHHHHHhC--CEEEEecCCCCCCHHHHHHHHHH
Confidence 9997644321 222333333333 3445 799999999998887753
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=99.96 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+.+++||||||.... .... ......+|.+++|+|+.......+.. ....+..++.+. ++++||+|+
T Consensus 123 ~~~i~~iDtPGh~~f---~~~~-----~~g~~~aD~allVVda~~g~~~qt~e-----~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 123 KRHYAHVDCPGHADY---VKNM-----ITGAAQMDGGILVVSAPDGPMPQTKE-----HILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CeEEEEEECCCccch---HHHH-----HHHHhhCCEEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEEEeecc
Confidence 467899999997542 2111 12334589999999998654332211 233445566675 568999999
Q ss_pred CCcCC
Q 025133 199 VSPER 203 (257)
Q Consensus 199 ~~~~~ 203 (257)
++.++
T Consensus 190 v~~~~ 194 (447)
T PLN03127 190 VDDEE 194 (447)
T ss_pred CCHHH
Confidence 86443
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=90.29 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCCCc------HHHHHhcccccccccce-eeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEE
Q 025133 120 RLDHILLETTGLANP------APLASVLWLDDQLESAV-RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~-~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~viv 192 (257)
.+++.||||||+... ..+...+. +....... ..+.+++|+|+.......+.. .+...+.....+.++|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~-~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~V 198 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIK-DMIKQFISKEECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIGV 198 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHH-HHHHHHHhCccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEEE
Confidence 389999999998632 22211110 11111112 335899999997654332210 1233344455678999
Q ss_pred EeCCCCCCcC
Q 025133 193 LNKVDLVSPE 202 (257)
Q Consensus 193 lNK~D~~~~~ 202 (257)
+||+|..++.
T Consensus 199 iTK~D~~~~~ 208 (240)
T smart00053 199 ITKLDLMDEG 208 (240)
T ss_pred EECCCCCCcc
Confidence 9999999764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=89.50 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------------Hhhc
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------------IAFA 188 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------------l~~~ 188 (257)
+.+-|.||+|......+... .....+.+++|+|..+.... +.... +...+.+ ...|
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~--------~~~~ad~iIlVfdv~~~~Sf-~~i~~---~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRL--------SILTGDVFILVFSLDNRESF-EEVCR---LREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEEEECCCChhhhHHHHH--------HhccCCEEEEEEeCCCHHHH-HHHHH---HHHHHHHhhcccccccccCCCCc
Confidence 44669999997543332211 12346889999998864321 11100 1111111 1357
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|.||+|+....+ ...+++.+.+...+ ...++ .|++++.++++++..+.
T Consensus 116 iIivgNK~Dl~~~~~--v~~~ei~~~~~~~~-~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 116 MVICGNKADRDFPRE--VQRDEVEQLVGGDE-NCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred EEEEEECccchhccc--cCHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 789999999975332 13455666554333 33445 89999999999987763
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=84.99 Aligned_cols=108 Identities=20% Similarity=0.090 Sum_probs=59.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh----cCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----ADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~----~~vivlNK~ 196 (257)
..+.|.||||.......... ....++.+++|+|+........ .. .+...+.+-.. +.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~~iilVgnK~ 116 (170)
T cd04108 49 FSLQLWDTAGQERFKCIAST--------YYRGAQAIIIVFDLTDVASLEH-TR---QWLEDALKENDPSSVLLFLVGTKK 116 (170)
T ss_pred EEEEEEeCCChHHHHhhHHH--------HhcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCCeEEEEEECh
Confidence 34679999997543333221 1235789999999976332211 10 01111111111 257899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+............++. . ++++ .|++.+.++++++....
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 117 DLSSPAQYALMEQDAIKLAAEM-Q-AEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred hcCccccccccHHHHHHHHHHc-C-CeEEEEECCCCCCHHHHHHHHH
Confidence 9876533111112222333332 2 3444 79999999999887654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=88.32 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=62.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+-|.++++|++|||||+|...|..... .-.+.+.++......
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~e~n~~~~~------------------------------------ 43 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSMENNIAYNV------------------------------------ 43 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEEECCG------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccccCCceEEe------------------------------------
Confidence 347899999999999999999986310 001111111100000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
....+..+-+||+||-..- ..+.+.+ .....+..||||||+............. +...+..
T Consensus 44 -----~~~~~~~~~lvD~PGH~rlr~~~~~~~------~~~~~~k~IIfvvDSs~~~~~~~~~Ae~--Ly~iL~~~~~~~ 110 (181)
T PF09439_consen 44 -----NNSKGKKLRLVDIPGHPRLRSKLLDEL------KYLSNAKGIIFVVDSSTDQKELRDVAEY--LYDILSDTEVQK 110 (181)
T ss_dssp -----SSTCGTCECEEEETT-HCCCHHHHHHH------HHHGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHCCT
T ss_pred -----ecCCCCEEEEEECCCcHHHHHHHHHhh------hchhhCCEEEEEEeCccchhhHHHHHHH--HHHHHHhhhhcc
Confidence 0022356779999995443 3333321 1233578999999998765544432111 1111211
Q ss_pred HhhcCEEEEeCCCCCCcCC
Q 025133 185 IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~ 203 (257)
-..|.+|+.||.|+.....
T Consensus 111 ~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 111 NKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp T--EEEEEEE-TTSTT---
T ss_pred CCCCEEEEEeCccccccCC
Confidence 2346788899999987654
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=85.93 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH--HH-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--QI-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--ql-~~~~vivlNK~D 197 (257)
..+.+.||+|..........+ ...++.+|+|+|++....... ... .+...+. ++ ..|.+++.||+|
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~--------~~~a~~iI~V~D~s~~~s~~~-~~~--~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVE-ARD--ELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCcHHHHHH-HHH--HHHHHhcCHhhCCCCEEEEEECCC
Confidence 457799999974433332211 234689999999986433211 100 0111111 11 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC--CCC-EEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN--SLA-HVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~--~~a-~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... .+++...+.-.+ +.. .++ .|++++.|+.+++..+.
T Consensus 130 l~~~~~----~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 130 LPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCCCC----HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 876543 455555553211 111 233 58999999999887653
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.7e-09 Score=86.47 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||+|.. ....... +. ...+.+++|+|+........ .. .+...+.+. ..|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~---~~~~~~~----~~--~~ad~iilV~d~td~~S~~~-~~---~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 50 STLVVIDHWEQE---MWTEDSC----MQ--YQGDAFVVVYSVTDRSSFER-AS---ELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEeCCCcc---hHHHhHH----hh--cCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECh
Confidence 457799999986 1111110 00 15789999999987543211 10 011222222 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+.. .+...+ +....+ ++++ .|++.+.|+++++..+.
T Consensus 117 Dl~~~~~v~--~~~~~~-~a~~~~-~~~~e~SA~~~~gv~~l~~~l~ 159 (221)
T cd04148 117 DLARSREVS--VQEGRA-CAVVFD-CKFIETSAGLQHNVDELLEGIV 159 (221)
T ss_pred hccccceec--HHHHHH-HHHHcC-CeEEEecCCCCCCHHHHHHHHH
Confidence 997654321 222223 222223 3444 79999999998887764
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=88.99 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.+.||+|.......... .....+.+++|+|..+.... +... .+...+.+. ..+.++|.||+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~Sf-~~l~---~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRS--------YYRNSVGVLLVFDITNRESF-EHVH---DWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEEeCCcchhHHHHHHH--------HhcCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCeEEEEEEcc
Confidence 34679999996543332211 12346889999999875432 1110 011111121 12346778999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+. ..+......+.. + ..++ .|++.+.++++++..+.
T Consensus 120 Dl~~~~~v--~~~~~~~~~~~~-~-~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 120 DLESQRQV--TREEAEKLAKDL-G-MKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred cccccccc--CHHHHHHHHHHh-C-CEEEEEeCCCCCCHHHHHHHHH
Confidence 99765432 123333433333 3 4455 78999999998887664
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-09 Score=83.33 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.++||||.......... ....++.+++|+|..+......... .+...+.+. ..|.+++.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~a~~~i~v~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPL--------CYPDTDVFLLCFSVVNPSSFQNISE---KWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEECCCChhhcccccc--------ccCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhhc
Confidence 4679999997443222111 1235789999999886543211100 011122221 24678899999987
Q ss_pred CcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
... +..-..++...+.++.+. ..++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGA-CEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHH
Confidence 532 111112334444444433 2455 7999999999998754
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=106.28 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+... + .......+|.+++|+|+..+....+.. ........+.+.++++||+|+
T Consensus 73 ~~~~~~liDTPG~~~f~~--e------v~~al~~~D~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p~iv~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTI--E------VERSLRVLDGAVAVFDAVGGVEPQSET-----VWRQADKYKVPRIAFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHHH--H------HHHHHHHcCEEEEEEECCCCcchhhHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 456799999999654221 1 122344568999999998775543321 333445566788999999999
Q ss_pred CCcC
Q 025133 199 VSPE 202 (257)
Q Consensus 199 ~~~~ 202 (257)
.+.+
T Consensus 140 ~~~~ 143 (693)
T PRK00007 140 TGAD 143 (693)
T ss_pred CCCC
Confidence 8754
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=94.02 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=83.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|++|+||||++.+|... .. |++++++..|... .....++... ...++.+ .....+ .....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v---~~~~~~----~dp~~ 170 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-PAAIEQLKTLGEQIGVPV---FPSGDG----QDPVD 170 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-hHHHHHHHHHHhhcCCeE---EecCCC----CCHHH
Confidence 3458999999999999999999763 34 8899999999654 2211111110 0111111 110000 11122
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+.....+.. +..++|+|||||+|-.. .......+. .+......+.+++|+|+.......+. ...+..-
T Consensus 171 i~~~a~~~a-~~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~gq~av~~-------a~~F~~~ 239 (433)
T PRK10867 171 IAKAALEEA-KENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTGQDAVNT-------AKAFNEA 239 (433)
T ss_pred HHHHHHHHH-HhcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccHHHHHHH-------HHHHHhh
Confidence 322221222 24579999999999543 334433221 12233455678999999765443221 1122211
Q ss_pred hhcCEEEEeCCCCCCc
Q 025133 186 AFADVVILNKVDLVSP 201 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~ 201 (257)
-..+-+|+||.|....
T Consensus 240 ~~i~giIlTKlD~~~r 255 (433)
T PRK10867 240 LGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCCEEEEeCccCccc
Confidence 1246789999996543
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-09 Score=85.43 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|......+.... ...++.+++|+|..+...... .. .+...+.+. ..+.++|.||+|
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y--------~~~ad~iIlVfDvtd~~Sf~~-l~---~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDD-LP---KWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHH--------hcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 456799999976544433221 235789999999987543221 11 122233332 245688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+.. .....++.++. ....++ .|++++.|+++++....
T Consensus 117 L~~~~~v~--~~~~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 117 CETDREIS--RQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred cccccccC--HHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHH
Confidence 97644321 22223333332 224455 79999999998886654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=84.48 Aligned_cols=106 Identities=21% Similarity=0.140 Sum_probs=57.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-HhhcCEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l~~~~vivlNK~D~ 198 (257)
+..+.+.||+|......+... ....++.+++|+|+...... ...... +...... -..|.++|.||+|+
T Consensus 43 ~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~V~D~t~~~s~-~~~~~~--l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 43 DAIMELLEIGGSQNLRKYWKR--------YLSGSQGLIFVVDSADSERL-PLARQE--LHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred CeEEEEEECCCCcchhHHHHH--------HHhhCCEEEEEEECCCHHHH-HHHHHH--HHHHHhCCCCCcEEEEEeCcCC
Confidence 456789999997654433321 12357899999999875421 111000 1111111 13467889999998
Q ss_pred CCcCCCcchHHHHHHHH--HHhCC--CCEEE-EeecC------CcChhhhhcC
Q 025133 199 VSPERSGDSLDELEKEI--HEINS--LAHVI-RSVRC------QVDLSEVLNC 240 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l--~~~~~--~a~i~-~s~~~------~~~~~~l~~~ 240 (257)
..... ...+...+ ..+.. ...++ .|++. +.++.++++.
T Consensus 112 ~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 112 PAARS----VQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred cCCCC----HHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 76543 34333322 22211 22344 56666 7777777654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=83.11 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=58.9
Q ss_pred CEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 122 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
.+-++||||.... ...... .....+.+++++|+...... +.... +...+.+. ..|.++|.||
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQADTEQLER--------SIRWADGFVLVYSITDRSSF-DEISQ---LKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccccchHHH--------HHHhCCEEEEEEECCCHHHH-HHHHH---HHHHHHHHhcCCCCCCEEEEEEC
Confidence 4669999997631 111111 12346899999999876432 21110 12222222 4567889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC-cChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ-VDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~-~~~~~l~~~~ 241 (257)
+|+...... ..+...+..+..+ .+++ .|++.+ .++++++...
T Consensus 116 ~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 116 ADLLHYRQV--STEEGEKLASELG--CLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CchHHhCcc--CHHHHHHHHHHcC--CEEEEeCCCCCchhHHHHHHHH
Confidence 998654322 1233334333333 4555 688887 4899888654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=85.15 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.+.||+|.......... ....++.+++|+|..+.... ..... +...+.+.. .+.+++.||+|
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~--------~~~~~d~iilv~d~~~~~s~-~~i~~---~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNS--------YYRGAHGYLLVYDVTDQESF-ENLKF---WINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEECCCcHHHHhhHHH--------HccCCCEEEEEEECcCHHHH-HHHHH---HHHHHHHhCCCCCeEEEEEECCC
Confidence 34668999996433322221 12357899999999865432 22111 222222221 35688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..... ........+.. ..+++ .|++++.++++++...
T Consensus 117 l~~~~~v~--~~~~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 117 LVNNKVVD--SNIAKSFCDSL--NIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CcccccCC--HHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 88544321 12223333322 23455 7899999998877665
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=87.72 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+...... .....+|.+++|+|+.......... +.......+.|.++++||+|+
T Consensus 69 ~~~~i~liDTPG~~df~~~~~--------~~l~~aD~~IlVvda~~g~~~~~~~-----i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTY--------RTLTAVDSAVMVIDAAKGVEPQTRK-----LFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred CCEEEEEEECCCchHHHHHHH--------HHHHHCCEEEEEEECCCCccHHHHH-----HHHHHHhcCCCEEEEEECCcc
Confidence 457789999999764332111 1223579999999998653321110 122333445788999999998
Q ss_pred CCcC
Q 025133 199 VSPE 202 (257)
Q Consensus 199 ~~~~ 202 (257)
....
T Consensus 136 ~~a~ 139 (267)
T cd04169 136 EGRD 139 (267)
T ss_pred CCCC
Confidence 7653
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=84.50 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=59.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D 197 (257)
.+.|.||||......+.... ....+.+++|+|........+ .. .+...+.+ ...|.++|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLY--------IKNGQGFIVVYSLVNQQTFQD-IK---PMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccchHHHH--------HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence 35689999965443333221 234688999999876543211 10 01122222 2357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... .........+.. . .+++ .|++.+.++.+++...
T Consensus 118 l~~~~~~--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 118 LESEREV--SSAEGRALAEEW-G-CPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred chhcCcc--CHHHHHHHHHHh-C-CEEEEecCCCCCCHHHHHHHH
Confidence 8764332 122222322222 2 3444 7899999999888654
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=85.47 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||+|......+.... ....+.+++|+|........... .+...+.+. ..|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~--------~~~~d~~ilv~d~~~~~Sf~~~~----~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQY--------MRCGEGFIICYSVTDRHSFQEAS----EFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHH--------hhcCCEEEEEEECCchhHHHHHH----HHHHHHHHhcCCCCCCEEEEEECh
Confidence 346789999976554443321 22468899999987654322110 012223332 24678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..++.....+.. .++++ .|++.+.++++++....
T Consensus 118 Dl~~~~~v--~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 118 DLESQRQV--TTEEGRNLAREF--NCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred hhhhcCcc--CHHHHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHH
Confidence 98765432 122333333333 34665 78999999999887653
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=81.92 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK 195 (257)
..+.++||+|..... .+.+. . ...++.+++|+|+.......... .+...+.+. ..|.++|.||
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQH-----Y---YRNVHAVVFVYDVTNMASFHSLP----SWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHH-----h---hcCCCEEEEEEECCCHHHHHhHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457799999964322 11111 1 23568899999998654322110 012122221 2577999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecC---CcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRC---QVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~---~~~~~~l~~~~ 241 (257)
+|+....+.. .+......+.. ..+++ .|++. +.++++++...
T Consensus 119 ~Dl~~~~~~~--~~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 119 CDLREQIQVP--TDLAQRFADAH--SMPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred ccchhhcCCC--HHHHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHH
Confidence 9987654421 12222323322 24455 67887 77888777543
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=89.94 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=92.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++++|++|+||||++.+|... ..| .+++++..|... .+....+...+ ..++.+ .. .....++
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~---~~-------~~~~~~l 206 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-IGGHEQLRIFGKILGVPV---HA-------VKDGGDL 206 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-ccHHHHHHHHHHHcCCce---Ee-------cCCcccH
Confidence 48999999999999999999763 334 689999887643 22221211110 001111 00 1122344
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..+.++|||||+|...... +.+.+. .+.........++|+++......+... ...+....
T Consensus 207 ~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~ev------i~~f~~~~ 273 (374)
T PRK14722 207 QLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLNEV------VQAYRSAA 273 (374)
T ss_pred HHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHHHH------HHHHHHhh
Confidence 444443 3468999999999775433 223221 122222334568899998876654432 12222221
Q ss_pred --------hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 187 --------FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 187 --------~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
..+-+|++|.|.... +..+...+.... .++...+.++
T Consensus 274 ~~p~~~~~~~~~~I~TKlDEt~~------~G~~l~~~~~~~--lPi~yvt~Gq 318 (374)
T PRK14722 274 GQPKAALPDLAGCILTKLDEASN------LGGVLDTVIRYK--LPVHYVSTGQ 318 (374)
T ss_pred cccccccCCCCEEEEeccccCCC------ccHHHHHHHHHC--cCeEEEecCC
Confidence 246889999997764 344444444332 2344444443
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=104.51 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=74.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.++.-++|+|.+|+|||||+++|+.... ..+++.+. .|. ...|..-... .-+..+. .....+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~--~~~-~~~D~~~~E~-~rgiti~------~~~~~~------- 68 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH--DGA-ATMDWMEQEQ-ERGITIT------SAATTC------- 68 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CCc-cccCCChhHh-hcCCCcc------ceeEEE-------
Confidence 3566799999999999999999985311 11111111 111 1111110000 0011110 000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
...+..+.|+||||..+... + .......+|.+++|+|+.......+.. +.......+.+
T Consensus 69 --------~~~~~~i~liDTPG~~~f~~--e------~~~al~~~D~~ilVvDa~~g~~~qt~~-----i~~~~~~~~~p 127 (691)
T PRK12739 69 --------FWKGHRINIIDTPGHVDFTI--E------VERSLRVLDGAVAVFDAVSGVEPQSET-----VWRQADKYGVP 127 (691)
T ss_pred --------EECCEEEEEEcCCCHHHHHH--H------HHHHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCC
Confidence 03457799999999754211 1 122344579999999998765443321 23334445678
Q ss_pred CEEEEeCCCCCCcC
Q 025133 189 DVVILNKVDLVSPE 202 (257)
Q Consensus 189 ~vivlNK~D~~~~~ 202 (257)
.++++||+|+...+
T Consensus 128 ~iv~iNK~D~~~~~ 141 (691)
T PRK12739 128 RIVFVNKMDRIGAD 141 (691)
T ss_pred EEEEEECCCCCCCC
Confidence 89999999999754
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=85.31 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=59.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.++||||.......... .....+.+++|+|............ .+...+.+. ..|.++|.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~~~~~~~s~~~~~~---~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEeCCCcccccccccc--------cCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3568999996543222111 1234578899999876543211100 012222222 35678889999986
Q ss_pred CcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.... .-..+......++.+. ..++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEIGA-HCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEecCCcCCCHHHHHHHH
Confidence 54211 0112333444444432 3455 7999999999998654
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-09 Score=102.85 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=59.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+..++||||||..+ +... .......+|.+++|+|+..+....... .......++. +.++++||+|
T Consensus 102 ~~~~~~liDtPG~~~---f~~~-----~~~~~~~aD~~llVvda~~g~~~~t~e-----~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ---YTRN-----MVTGASTADLAIILVDARKGVLTQTRR-----HSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH---HHHH-----HHHHHHhCCEEEEEEECCCCccccCHH-----HHHHHHHhCCCeEEEEEEecc
Confidence 456789999999532 2211 112345789999999997654322110 1223344443 3567899999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhh
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~ 236 (257)
+++.++ ..+...++...+++.. ...+++ +|++++.|+.+
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 985322 1111223333334432 223344 89999988864
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=88.40 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=87.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+.-+++|+|.+|+||||.|.+|... ..|+++.+...|.-+.-.++.-.++-...++.+ +....|.- ...-..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I~~~~G~D---pAaVaf 211 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---ISGKEGAD---PAAVAF 211 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE---EccCCCCC---cHHHHH
Confidence 4558999999999999999999874 669999999888432111111111100011111 00001110 011223
Q ss_pred HHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcc-cccccccc--eeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTG-LANPAPLASVLW-LDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~-~~~~~~~~--~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
.+++.- +..++|++||||.| ++....+++.+. +.+..... ...+-++.++||..+.+.+.. ...+..
T Consensus 212 DAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q-------Ak~F~e 282 (340)
T COG0552 212 DAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ-------AKIFNE 282 (340)
T ss_pred HHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH-------HHHHHH
Confidence 333332 25689999999999 776766665442 11111111 112237777899998876542 233444
Q ss_pred HhhcCEEEEeCCCCCC
Q 025133 185 IAFADVVILNKVDLVS 200 (257)
Q Consensus 185 l~~~~vivlNK~D~~~ 200 (257)
.-.-+-++++|.|-..
T Consensus 283 av~l~GiIlTKlDgtA 298 (340)
T COG0552 283 AVGLDGIILTKLDGTA 298 (340)
T ss_pred hcCCceEEEEecccCC
Confidence 4445899999999543
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=86.28 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|.||+|......+.... ....+.+++|+|....... .... .+...+.+. ..+.++|.||+|
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKRQTF-DNVQ---RWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hCCCCEEEEEEECCChHHH-HHHH---HHHHHHHHhCCCCCeEEEEEEChh
Confidence 346789999965443333211 2246889999998754332 1110 022222332 246688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+.. .+.. ..+.... ..+++ .|++.+.++++++..+.
T Consensus 129 l~~~~~~~--~~~~-~~l~~~~-~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 129 LNHLRSVA--EEDG-QALAEKE-GLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred cccccCCC--HHHH-HHHHHHc-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 87544321 1222 2233333 34555 79999999988887663
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=89.32 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
...+.++||||..+...... .....+|.+++|+|+.......... +.........|.++|+||+|++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~--------~~~~~aD~~llVvD~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVA--------AALRLSDGVVLVVDVVEGVTSNTER-----LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHHH--------HHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 35688999999875433221 1234679999999998654322110 1112223347899999999987
Q ss_pred CcCCC---cchHHHHHHHHHHhCCCC
Q 025133 200 SPERS---GDSLDELEKEIHEINSLA 222 (257)
Q Consensus 200 ~~~~~---~~~l~~~~~~l~~~~~~a 222 (257)
..+.. .+.++.+.+.++++|+.+
T Consensus 137 ~~~~~l~~~~~~~~l~~~i~~~n~~~ 162 (213)
T cd04167 137 ILELKLPPNDAYFKLRHIIDEVNNII 162 (213)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 32110 122455555666655544
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=90.90 Aligned_cols=166 Identities=21% Similarity=0.266 Sum_probs=97.6
Q ss_pred ccccccccCcc--cCCCcc-eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-hhhhcCCCCcee
Q 025133 15 DETTHEFSNSH--ENDDVS-VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMINEGEGGALV 88 (257)
Q Consensus 15 ~~~~~~~~~~~--~~~~~~-~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-~~~~~~~~~~~~ 88 (257)
++|+..+++.. .....+ .-+|.++|.-||||||++.+|..+ .+++++.++..|.-.-.-++. ..+... .++.+
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q-~~v~~ 158 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ-VGVPF 158 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH-cCCce
Confidence 56777677422 222233 347899999999999999999774 579999999998543111111 001110 11111
Q ss_pred eeeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 89 EEWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 89 ~~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
.....+ .-+-++ ...+... +...+|++||||.| +.....+++.+. .++...+.+-+++|+|+..+.
T Consensus 159 ---f~~~~~----~~Pv~Iak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~---~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 159 ---FGSGTE----KDPVEIAKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELK---EIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred ---ecCCCC----CCHHHHHHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHH---HHHhhcCCCeEEEEEecccch
Confidence 000000 001112 2223222 24578999999999 544556655442 345667889999999999988
Q ss_pred HHHhhhccCCChhHHH-HHHhhcCEEEEeCCCCCCc
Q 025133 167 FQIDKYRHLSSYPEAI-HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~ql~~~~vivlNK~D~~~~ 201 (257)
..... ...| .++. -.-+|++|.|....
T Consensus 227 dA~~~-------A~aF~e~l~-itGvIlTKlDGdaR 254 (451)
T COG0541 227 DAVNT-------AKAFNEALG-ITGVILTKLDGDAR 254 (451)
T ss_pred HHHHH-------HHHHhhhcC-CceEEEEcccCCCc
Confidence 76442 2222 2232 35679999997654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-09 Score=100.59 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=73.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~-~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++.-++|+|.+|+|||||+++|+..... .++. ..+.|+ ...|...... .-+..+. .....+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~--~~~~g~-~~~D~~~~e~-~rgiti~----~~~~~~---------- 70 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIG--EVHDGA-ATMDWMEQEK-ERGITIT----SAATTV---------- 70 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccc--cccCCc-cccCCCHHHH-hcCCCEe----cceEEE----------
Confidence 4668999999999999999999853110 0111 111221 1112111000 0011110 000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
...+..+.|+||||..+...... .....+|.+++|+|+.......+.. ........+.+.
T Consensus 71 -------~~~~~~i~liDTPG~~~~~~~~~--------~~l~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p~ 130 (689)
T TIGR00484 71 -------FWKGHRINIIDTPGHVDFTVEVE--------RSLRVLDGAVAVLDAVGGVQPQSET-----VWRQANRYEVPR 130 (689)
T ss_pred -------EECCeEEEEEECCCCcchhHHHH--------HHHHHhCEEEEEEeCCCCCChhHHH-----HHHHHHHcCCCE
Confidence 03457789999999876433211 1234569999999998754432211 222334456788
Q ss_pred EEEEeCCCCCCcC
Q 025133 190 VVILNKVDLVSPE 202 (257)
Q Consensus 190 vivlNK~D~~~~~ 202 (257)
++++||+|+...+
T Consensus 131 ivviNK~D~~~~~ 143 (689)
T TIGR00484 131 IAFVNKMDKTGAN 143 (689)
T ss_pred EEEEECCCCCCCC
Confidence 9999999998754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=83.34 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+.... ...++.+++|+|.......... . .+...+.+. ..|.++|-||+|+
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~--------~~~ad~illVfD~t~~~Sf~~~-~---~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSY--------SRGAQGIILVYDITNRWSFDGI-D---RWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCEEEEEECccc
Confidence 446789999986554443321 2357899999999865432221 1 011122211 2466888899999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC-------CCCCCcccccc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD-------ATVNPIKLCSE 255 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~ 255 (257)
....+. ..++.+.+.+..+ ..++ .|++++.++++++..+.-. ++..|.+-||.
T Consensus 123 ~~~~~v--~~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~ 183 (189)
T cd04121 123 AFKRQV--ATEQAQAYAERNG--MTFFEVSPLCNFNITESFTELARIVLMRHGRPPQSPPQNCSR 183 (189)
T ss_pred hhccCC--CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccccC
Confidence 754332 2445555555443 3455 7999999999887766322 33455566654
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-09 Score=86.65 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=37.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
...+.||||||+........... .. .....|.+++|+++.+.....+... +...........++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~-~~---~~~~~d~vi~V~~~~~~~~~~~~~~----l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEIT-EE---YLPKADVVIFVVDANQDLTESDMEF----LKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHH-HH---HHSTTEEEEEEEETTSTGGGHHHHH----HHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHH-HH---hhccCCEEEEEeccCcccchHHHHH----HHHHhcCCCCeEEEEEcCC
Confidence 56789999999865322111110 11 1245789999999998554322110 1222233334467788884
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=91.56 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=83.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.-+++++|++|+||||++.+|... ..|++++++..|... .....++-..+ ..++.+ .....+ ....++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R-~~a~~QL~~~a~~~gvp~---~~~~~~----~~P~~i 170 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR-PAAIEQLKVLGQQVGVPV---FALGKG----QSPVEI 170 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc-hHHHHHHHHHHHhcCCce---EecCCC----CCHHHH
Confidence 448999999999999999999764 358899999999654 21111111110 011111 110000 011122
Q ss_pred H-HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-H
Q 025133 108 V-QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-Q 184 (257)
Q Consensus 108 ~-~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-q 184 (257)
. ..+... ...++|+|||||+|... .......+. .+......+.+++|+|+......... ...+. .
T Consensus 171 ~~~al~~~--~~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq~~~~~-------a~~f~~~ 238 (428)
T TIGR00959 171 ARRALEYA--KENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQDAVNT-------AKTFNER 238 (428)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchHHHHHH-------HHHHHhh
Confidence 2 222222 14578999999999543 333333221 22334456788999999865443321 12222 2
Q ss_pred HhhcCEEEEeCCCCCCc
Q 025133 185 IAFADVVILNKVDLVSP 201 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~ 201 (257)
+ ..+-+|+||.|....
T Consensus 239 v-~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 239 L-GLTGVVLTKLDGDAR 254 (428)
T ss_pred C-CCCEEEEeCccCccc
Confidence 3 346889999996543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-08 Score=95.60 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=85.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++|+|+.|+||||++.+|... ..| ++++++..|... ++.-..+.... ..++.+ ..+....++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv----------~~~~~~~~l 254 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR-IGALEQLRIYGRILGVPV----------HAVKDAADL 254 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc-hHHHHHHHHHHHhCCCCc----------cccCCHHHH
Confidence 59999999999999999999863 334 589999988654 33222222110 011100 111223445
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..++|+|||||+|..+ ...+.+.+. .+........+++|+|+......+... ...+....
T Consensus 255 ~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~---~l~~~~~p~e~~LVLsAt~~~~~l~~i------~~~f~~~~ 321 (767)
T PRK14723 255 RFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIA---MLCGVGRPVRRLLLLNAASHGDTLNEV------VHAYRHGA 321 (767)
T ss_pred HHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHH---HHhccCCCCeEEEEECCCCcHHHHHHH------HHHHhhcc
Confidence 555543 3467999999999654 333443332 112223345689999998655443321 22222221
Q ss_pred --hcCEEEEeCCCCCCc
Q 025133 187 --FADVVILNKVDLVSP 201 (257)
Q Consensus 187 --~~~vivlNK~D~~~~ 201 (257)
..+-+|++|.|....
T Consensus 322 ~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 322 GEDVDGCIITKLDEATH 338 (767)
T ss_pred cCCCCEEEEeccCCCCC
Confidence 367899999998764
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-09 Score=95.24 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE-EEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v-ivlNK~D~ 198 (257)
+..+.|+||||..+ +.. ..+.....+|.+++|+|+.......... ....+.....+.+ +++||+|+
T Consensus 74 ~~~~~liDtpGh~~---f~~-----~~~~~~~~~D~~ilVvda~~g~~~qt~e-----~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 NRHYAHVDCPGHAD---YVK-----NMITGAAQMDGAILVVSATDGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CEEEEEEECCchHH---HHH-----HHHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEeccc
Confidence 45688999999643 221 1123345689999999998754332211 2233444566766 57999999
Q ss_pred CCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCC
Q 025133 199 VSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~ 231 (257)
.+.++..+. .++++..++.... ..+++ .|+.++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 875432111 2356666666532 14555 677654
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-09 Score=90.99 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=36.0
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhc-CccCCCCCCCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLN-CRAYDATVNPI 250 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~-~~~~~~~~~~~ 250 (257)
.|.++++||+|+.+.++ +...++...+...++ +|+..+.++++|.+ .+..-+++.|.
T Consensus 215 KPvI~VlNK~Dl~~~~~-------~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~ 273 (318)
T cd01899 215 KPMVIAANKADIPDAEN-------NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSD 273 (318)
T ss_pred CcEEEEEEHHHccChHH-------HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCC
Confidence 47889999999765432 122333333444455 89999999999987 35444444443
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=96.10 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=57.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.||||||..+. ... ........|.+++|+|+.......... ........+.+. ++++||+|+
T Consensus 143 ~~~i~liDtPGh~~f---~~~-----~~~g~~~aD~ailVVda~~G~~~qt~e-----~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 NRHYAHVDCPGHADY---VKN-----MITGAAQMDGAILVVSGADGPMPQTKE-----HILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CcEEEEEECCCHHHH---HHH-----HHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEecccc
Confidence 457889999996432 211 122334679999999998764432211 223334455674 568999999
Q ss_pred CCcCCCcchH-HHHHHHHHHhC---CCCEEE-EeecCC
Q 025133 199 VSPERSGDSL-DELEKEIHEIN---SLAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~l-~~~~~~l~~~~---~~a~i~-~s~~~~ 231 (257)
.+.++..+.+ +++...++... ...+++ .|+..+
T Consensus 210 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 210 VDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 8754332222 35666666642 134554 666654
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=83.74 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
+.+.|+||+|......+...+ ....+.+|+|+|...-..... ... +...+.+. ..+.++|.||+|
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~IlV~Dvt~~~Sf~~-l~~---~~~~l~~~~~~~~piIlVgNK~D 111 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMY--------CRGAAAVILTYDVSNVQSLEE-LED---RFLGLTDTANEDCLFAVVGNKLD 111 (220)
T ss_pred EEEEEEeCCCcccchhhHHHH--------hccCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCcEEEEEECcc
Confidence 457799999976554443322 235789999999986433211 100 11111121 235678899999
Q ss_pred CCCcC-----------------CCcchHHHHHHHHHHhCC------------CCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPE-----------------RSGDSLDELEKEIHEINS------------LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~-----------------~~~~~l~~~~~~l~~~~~------------~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.. ...-..++...+.++.+. +...+ .|++++.++++++....
T Consensus 112 L~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 97510 111123444454444431 13444 79999999998886653
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-09 Score=84.67 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=84.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.--+++.|+.||||||++++|... +..-...-.| .....+ .
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~----~~~~~~pT~g----~~~~~i-------------~----------------- 54 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG----EISETIPTIG----FNIEEI-------------K----------------- 54 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS----SEEEEEEESS----EEEEEE-------------E-----------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhc----cccccCcccc----ccccee-------------e-----------------
Confidence 4446799999999999999999842 2221111111 111000 0
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~ 187 (257)
..+..+.+.|.+|-....+..... ...++.+|||+|+..... +..... .+...+.+ + ..
T Consensus 55 -------~~~~~~~~~d~gG~~~~~~~w~~y--------~~~~~~iIfVvDssd~~~-l~e~~~--~L~~ll~~~~~~~~ 116 (175)
T PF00025_consen 55 -------YKGYSLTIWDLGGQESFRPLWKSY--------FQNADGIIFVVDSSDPER-LQEAKE--ELKELLNDPELKDI 116 (175)
T ss_dssp -------ETTEEEEEEEESSSGGGGGGGGGG--------HTTESEEEEEEETTGGGG-HHHHHH--HHHHHHTSGGGTTS
T ss_pred -------eCcEEEEEEeccccccccccceee--------ccccceeEEEEeccccee-eccccc--chhhhcchhhcccc
Confidence 124557799999964332222211 124789999999986432 111100 01112211 1 35
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHH--HhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIH--EIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~--~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|.++++||.|+.+... .+++...+. .+. ....++ .|+.++.|+.+.++.+
T Consensus 117 piLIl~NK~D~~~~~~----~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 117 PILILANKQDLPDAMS----EEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp EEEEEEESTTSTTSST----HHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred eEEEEeccccccCcch----hhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 7788899999877543 455555443 232 222344 6899999998776543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-08 Score=87.61 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=95.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc------CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeecc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG------KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTV 103 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~------~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~ 103 (257)
...+++++|+.|+||||++.+|... ..+++++++..|+.. .+....+..... .++.+ .+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~eQL~~~a~~lgvpv----------~~~~~ 241 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAKKQIQTYGDIMGIPV----------KAIES 241 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHHHHHHHHhhcCCcce----------EeeCc
Confidence 3468999999999999999999753 247899999999754 332222222111 11111 11122
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
..++...+. ...++++|||||+|..... .+.+. ...+.....-..+++|+||......+. ..
T Consensus 242 ~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el---~~~l~~~~~~~e~~LVlsat~~~~~~~---------~~ 305 (388)
T PRK12723 242 FKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEM---KELLNACGRDAEFHLAVSSTTKTSDVK---------EI 305 (388)
T ss_pred HHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHH---HHHHHhcCCCCeEEEEEcCCCCHHHHH---------HH
Confidence 334443333 3457999999999965432 22221 112221111225889999998765533 34
Q ss_pred HHHHhh--cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 182 IHQIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 182 ~~ql~~--~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
+.+... .+-++++|.|-... ...+...+...+ .++...+.|
T Consensus 306 ~~~~~~~~~~~~I~TKlDet~~------~G~~l~~~~~~~--~Pi~yit~G 348 (388)
T PRK12723 306 FHQFSPFSYKTVIFTKLDETTC------VGNLISLIYEMR--KEVSYVTDG 348 (388)
T ss_pred HHHhcCCCCCEEEEEeccCCCc------chHHHHHHHHHC--CCEEEEeCC
Confidence 444433 68999999998765 344445444432 344443444
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-09 Score=94.41 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+..+.|+||||..+ +.... ......+|.+++|+|+.......... .......++.+ .++++||+|
T Consensus 78 ~~~~~~liDtPGh~~---f~~~~-----~~~~~~aD~allVVda~~G~~~qt~~-----~~~~~~~~~~~~iivviNK~D 144 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ---YTRNM-----ATGASTADLAVLLVDARKGVLEQTRR-----HSYIASLLGIRHVVLAVNKMD 144 (406)
T ss_pred CCeEEEEEeCCCHHH---HHHHH-----HHHHhhCCEEEEEEECCCCCccccHH-----HHHHHHHcCCCcEEEEEEecc
Confidence 345789999999532 22111 12345789999999998764432210 12233444444 456999999
Q ss_pred CCCcCCCcchHH----HHHHHHHHhCC-CCEEE-EeecCCcChhh
Q 025133 198 LVSPERSGDSLD----ELEKEIHEINS-LAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~~~~~l~----~~~~~l~~~~~-~a~i~-~s~~~~~~~~~ 236 (257)
+.+.++ ..++ .+...++.... ..+++ +|+.++.|+++
T Consensus 145 ~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDE--EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccchH--HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 986432 1233 33333343322 23454 89999988865
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-08 Score=87.01 Aligned_cols=173 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee-eccch
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKH 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~----~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~ 105 (257)
...+++++||.|+||||++.+|... ...+++++|+.|.-. +|...++-.++. +-+=.+| |....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Ya~----------im~vp~~vv~~~~ 270 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTYAD----------IMGVPLEVVYSPK 270 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHHHH----------HhCCceEEecCHH
Confidence 3669999999999999999999753 346799999998654 555544433311 0011111 23566
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
+|..++..+- +.|+|||||.|... +....+. ...+..... ..+.+|+++..-...+. +.+.
T Consensus 271 el~~ai~~l~----~~d~ILVDTaGrs~~D~~~i~el---~~~~~~~~~-i~~~Lvlsat~K~~dlk---------ei~~ 333 (407)
T COG1419 271 ELAEAIEALR----DCDVILVDTAGRSQYDKEKIEEL---KELIDVSHS-IEVYLVLSATTKYEDLK---------EIIK 333 (407)
T ss_pred HHHHHHHHhh----cCCEEEEeCCCCCccCHHHHHHH---HHHHhcccc-ceEEEEEecCcchHHHH---------HHHH
Confidence 7888877654 47999999999654 3333221 122222323 35667788876655543 3455
Q ss_pred HHhh--cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 184 QIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 184 ql~~--~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
|++. -+-++++|.|-... +..+...+.+-+ -++..-+.|+.=.++|.-
T Consensus 334 ~f~~~~i~~~I~TKlDET~s------~G~~~s~~~e~~--~PV~YvT~GQ~VPeDI~v 383 (407)
T COG1419 334 QFSLFPIDGLIFTKLDETTS------LGNLFSLMYETR--LPVSYVTNGQRVPEDIVV 383 (407)
T ss_pred HhccCCcceeEEEcccccCc------hhHHHHHHHHhC--CCeEEEeCCCCCCchhhh
Confidence 5543 36789999997764 566666665543 244445666554455443
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=78.13 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=64.3
Q ss_pred EEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcC
Q 025133 124 ILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 124 ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~ 202 (257)
-.|||||- .+...+-..+ +.....++++++|-.+....+.+. +.+..-...+.+-|++|+|+.+..
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL-----~tt~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHAL-----ITTLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred cccCCchhhhhhhHHHHHH-----HHHhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccchH
Confidence 37899993 3332221111 233456788888877664433211 222233345677799999999754
Q ss_pred CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 203 RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++..+.+|.+.. ..+|| .|+....++++|++..
T Consensus 107 ----dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 107 ----DISLVKRWLREAG-AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ----hHHHHHHHHHHcC-CcceEEEeccCcccHHHHHHHH
Confidence 3789999998876 44666 6788888999988754
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-09 Score=95.95 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+..+.|+||||.. .+... .+......|.+++|+|+......... ...........++. +.++++||+|
T Consensus 83 ~~~~i~iiDtpGh~---~f~~~-----~~~~~~~aD~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 83 DKYEVTIVDCPGHR---DFIKN-----MITGASQADAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred CCeEEEEEECCCHH---HHHHH-----HHhhhhhCCEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChh
Confidence 35678999999943 22221 12234568999999999875211000 00000112233333 3567899999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhh
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~ 236 (257)
+.+..+ .....+++...++... ...+++ +|++++.++.+
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 985322 1122345555555543 124455 89999988875
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-09 Score=87.72 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ......+.+.+.++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~--------~~l~~aD~~ilVvD~~~g~~~~t~~-----~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVT--------AALRLCDGALVVVDAVEGVCVQTET-----VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHH--------HHHHhcCeeEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 46688999999876544332 1234578999999998764332211 1122223346789999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=80.02 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... .....+.+|+|+|..+.......... +...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~~~---~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRAK---WYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEECCCchhhhhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHHH---HHHHHHHhCCCCCEEEEeeChhh
Confidence 45679999996543332221 12357899999999864332111000 11111111 2477888999998
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... .-..++.....++.+ ...++ .|++++.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcC-CcEEEEecccccCCHHHHHHHH
Confidence 643210 011233333344443 33555 7999999999988654
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=80.68 Aligned_cols=108 Identities=9% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... ....++.+++|+|..+...... .. .+...+.+.. ..-++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~iilv~D~t~~~s~~~-i~---~~~~~~~~~~~~~~pilVgnK~Dl 116 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPL--------VCNDAVAILFMFDLTRKSTLNS-IK---EWYRQARGFNKTAIPILVGTKYDL 116 (182)
T ss_pred EEEEEEeCCCchhHHHhhHH--------HCcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCEEEEEEchhc
Confidence 44678999997544333221 1235789999999987544322 10 0122222221 123788999999
Q ss_pred CCcC---CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPE---RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~---~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.... +.....+...++.+.. . +.++ .|++++.|+++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~-~-~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 117 FADLPPEEQEEITKQARKYAKAM-K-APLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred cccccchhhhhhHHHHHHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHH
Confidence 6321 1001122233333333 3 4555 89999999999988663
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=78.23 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ....+.+++|+|....... .... .+...+.+. ..+.++|.||.|
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~sf-~~~~---~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQY--------YRRAQGIFLVYDISSERSY-QHIM---KWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHH--------hcCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346689999965443332211 2356899999998764332 1111 122222222 235688889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+.. .++.....+..+ .+++ .|++++.++++++..+
T Consensus 117 l~~~~~v~--~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 117 EEQKRQVG--DEQGNKLAKEYG--MDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred cccccCCC--HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 97654321 123333333332 4555 7899999999887654
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=96.06 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++|+||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~--------~l~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHHH--------HHHhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence 56789999998765433321 233578999999998754322110 00111223457899999999865
Q ss_pred cCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
... ....+++...+. ..+..-+..|++++.|++++++.+...
T Consensus 137 ~~~-~~~~~el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 137 ADP-ERVKKEIEEVIG-LDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred cCH-HHHHHHHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 321 011223332221 111112448999999999999887443
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=80.40 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... .....+.+++|+|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilv~d~~~~~s~-~~~~~--~w~~~i~~~~~~~piilvgnK~Dl 117 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPL--------SYPQTDVFLVCFSVVSPSSF-ENVKE--KWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred EEEEEEECCCccchhhhhhh--------hcccCCEEEEEEECCCHHHH-HHHHH--HHHHHHHHhCCCCCEEEEEECHhh
Confidence 45679999998654333211 12357899999998764332 11100 011122221 3467889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+.. -..++..+..++.+ ...++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~-~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 118 RDDPSTIEKLAKNKQKPITPETGEKLARDLK-AVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhChhhHHHhhhccCCCcCHHHHHHHHHHhC-CcEEEEecCCCCCCHHHHHHHH
Confidence 6542210 01122223333333 23455 7899999999988654
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-08 Score=79.64 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=58.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+-++||+|.......... ....++.+++|+|+........ .. .+...+.+. ..+.++|.||+|+
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~--------~~~~ad~~vlv~D~~~~~s~~~-l~---~~~~~~~~~~~~~~piiiv~nK~Dl 123 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNH-LA---SWLEDARQHANANMTIMLIGNKCDL 123 (210)
T ss_pred EEEEEeCCCcHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECccC
Confidence 3568999996433222211 1224688999999986443211 10 011112222 3466889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+...+..+..+ .+++ .|++++.++++++...
T Consensus 124 ~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 124 AHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred ccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 764332 2344445554432 3455 7899999998866443
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=94.55 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.++||||..+....... ....+|.+++|+|+.......... ........+.+.++++||+|+
T Consensus 66 ~~~~inliDTPG~~df~~~v~~--------~l~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVER--------VMSMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHH--------HHHhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence 3567889999998765443321 234579999999998754332211 122334456788999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCc----------ChhhhhcCccCC
Q 025133 199 VSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQV----------DLSEVLNCRAYD 244 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~----------~~~~l~~~~~~~ 244 (257)
..... .+.++++...+..+.. ..+++ .|+..+. ++..|++.+...
T Consensus 133 ~~a~~-~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 133 PGARP-DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred CCCch-hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 75422 2345566665543211 12344 7888876 466676665433
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=92.67 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||.. .+.. ..+.....+|.+++|+|+.... ...... ....+...+. +.++|+||+|+
T Consensus 85 ~~i~liDtPG~~---~f~~-----~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHE---TLMA-----TMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeecc
Confidence 568899999943 2222 2233445679999999998642 111110 1122333333 35788999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+.++.....+.+...++.. ....+++ +|++.+.++++|++.+..
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 87654222234455544432 1234555 899999999998887643
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-08 Score=82.63 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+.... ....+.+|+|+|..+...... .. .+...+.+. ..|.++|.||+|+
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilvfD~~~~~s~~~-i~---~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGY--------YIHGQCAIIMFDVTARLTYKN-VP---TWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEEECCCchhhhhhhHHH--------cccccEEEEEEeCCCHHHHHH-HH---HHHHHHHHhCCCCcEEEEEEchhh
Confidence 456799999976544333211 224678999999987543321 10 011112111 3577889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .+.+ ...+ .. ..+++ .|++++.++++++..+.
T Consensus 130 ~~~~v~---~~~~-~~~~-~~-~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 130 KNRQVK---AKQV-TFHR-KK-NLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred hhccCC---HHHH-HHHH-hc-CCEEEEcCCCCCCCHHHHHHHHH
Confidence 653221 1222 2222 22 23455 78999999998886654
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=81.60 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+.. . ....++.+++|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~-----~---~~~~a~~~ilv~dv~~~~sf~~~~~---~~~~~i~~~~~~~piilvgNK~Dl 116 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRS-----L---SYADTDVIMLCFSVDSPDSLENVES---KWLGEIREHCPGVKLVLVALKCDL 116 (189)
T ss_pred EEEEEEECCCChhcccccc-----c---cccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999743322211 1 1234678888888776543211100 011122221 3467889999999
Q ss_pred CCcCCCcc----------hHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGD----------SLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~----------~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
....+... ..++.....++.+ ...++ .|++++.|+++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~v~e~f~~l~ 170 (189)
T cd04134 117 REARNERDDLQRYGKHTISYEEGLAVAKRIN-ALRYLECSAKLNRGVNEAFTEAA 170 (189)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcC-CCEEEEccCCcCCCHHHHHHHHH
Confidence 76532100 1122233333333 23455 79999999999887663
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-09 Score=88.48 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++++|.+|+|||||+|+|++
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34789999999999999999994
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=96.34 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+.....+ .....+|.+++|+|+.......... +.....+...+.++++||+|+
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~--------~~l~~aD~alLVVDa~~G~~~qT~~-----~l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVE--------RVLGMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHH--------HHHHhCCEEEEEEeCCCCCcHHHHH-----HHHHHHHCCCCEEEEEECCCC
Confidence 456788999999765433222 1223579999999998654322211 223344556788999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCC-----CCEE-EEeecCCc----------ChhhhhcCccCC
Q 025133 199 VSPERSGDSLDELEKEIHEINS-----LAHV-IRSVRCQV----------DLSEVLNCRAYD 244 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~-----~a~i-~~s~~~~~----------~~~~l~~~~~~~ 244 (257)
..... .+.++++...+..+.. ..++ ..|++.+. ++..|++.+...
T Consensus 129 ~~a~~-~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 129 PSARP-DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred CCcCH-HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 65421 1234555555543321 1234 47887774 677777766443
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=80.97 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......... . ....++.+++++|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~-----~---~~~~a~~~llv~~i~~~~s~-~~~~~--~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 49 VQLALWDTAGQEEYERLRP-----L---SYSKAHVILIGFAVDTPDSL-ENVRT--KWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred EEEEEEECCCChhccccch-----h---hcCCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHHhCCCCCEEEEeeChhh
Confidence 3467889999643321111 0 12345778888887654322 11100 022222222 3567889999998
Q ss_pred CCcCC--------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPER--------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~--------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... .....+......+..+ ...++ .|++++.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l 168 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEIG-AKKYMECSALTGEGVDDVFEAA 168 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHhC-CcEEEEccCCCCCCHHHHHHHH
Confidence 54210 0011233333334333 22455 7899999999888776
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=86.41 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
..+++++|++|+||||++.+|... ..|.+++++..|... .+....+.... ..++.. ....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R-~aA~eQLk~yAe~lgvp~-------------~~~~~~ 288 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQLKRYADTMGMPF-------------YPVKDI 288 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh-hhHHHHHHHHHHhcCCCe-------------eehHHH
Confidence 347899999999999999999753 457899999998754 22222222110 001100 001112
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccc--eeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~--~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
. .+.+.+. ..++|+|||||+|.... ...++.+. ..+... .....+++|+|+......+... ...+.
T Consensus 289 ~-~l~~~l~-~~~~D~VLIDTaGr~~rd~~~l~eL~--~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------~~~f~- 357 (432)
T PRK12724 289 K-KFKETLA-RDGSELILIDTAGYSHRNLEQLERMQ--SFYSCFGEKDSVENLLVLSSTSSYHHTLTV------LKAYE- 357 (432)
T ss_pred H-HHHHHHH-hCCCCEEEEeCCCCCccCHHHHHHHH--HHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------HHHhc-
Confidence 2 2222222 36789999999997642 33332221 111111 1123578899999877554432 12221
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.-..+-+|++|.|-... ...+.......+ .++..-+.|+.=.++|
T Consensus 358 ~~~~~glIlTKLDEt~~------~G~il~i~~~~~--lPI~ylt~GQ~VPeDi 402 (432)
T PRK12724 358 SLNYRRILLTKLDEADF------LGSFLELADTYS--KSFTYLSVGQEVPFDI 402 (432)
T ss_pred CCCCCEEEEEcccCCCC------ccHHHHHHHHHC--CCEEEEecCCCCCCCH
Confidence 22368999999998654 344444444332 3455445554333333
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-09 Score=90.02 Aligned_cols=167 Identities=23% Similarity=0.348 Sum_probs=93.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCC----------eEEEEecC-----CCcccccchh--h--hhc-CCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGK----------RIAVILNE-----FGEEIGVERA--M--INE-GEGGALVE 89 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~----------~v~ii~~~-----~g~~~~~d~~--~--~~~-~~~~~~~~ 89 (257)
.-|.|++.|.-..||||+|+.|+.. .+|. -+++...+ +|++.-+|.. + ++. |+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~------ 130 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN------ 130 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH------
Confidence 5689999999999999999999975 2232 22232221 2221111100 0 000 00
Q ss_pred eeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH--HHhccccccccc-ceeeeeEEEEEeccchH
Q 025133 90 EWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLES-AVRLDSIITVVDAKNLL 166 (257)
Q Consensus 90 ~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~-~~~~~~vi~vvDa~~~~ 166 (257)
.+.+...|..+++.+.+ .+-+|||||+-..... ...+-+...+.. +.++|.+++|+||....
T Consensus 131 ---aflnRf~csqmp~~vLe------------~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD 195 (532)
T KOG1954|consen 131 ---AFLNRFMCSQLPNQVLE------------SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD 195 (532)
T ss_pred ---HHHHHHHHhcCChhhhh------------heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc
Confidence 00111222223333322 3569999996544322 111111111111 24789999999997543
Q ss_pred HHHhhhccCCChhHHHHHHh---hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 167 FQIDKYRHLSSYPEAIHQIA---FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
- .++ +.+.+.+++ .-.-+|+||+|.++..+..+.+..+.+.|.++...+.+.
T Consensus 196 I-sdE------f~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~ 250 (532)
T KOG1954|consen 196 I-SDE------FKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVS 250 (532)
T ss_pred c-cHH------HHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcce
Confidence 2 111 334455554 345889999999999887777888888888876555443
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=86.45 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
...+..|+.++|..|+||||.+-+|..+ +.|.+++.+-.|.-..-.+|.-..+-...++.+.. .+..-
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg----------syte~ 166 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG----------SYTEA 166 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe----------ccccc
Confidence 4446669999999999999999999874 66999999887743211122111111001111100 00111
Q ss_pred hHHHHHHHHHH--hcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 106 SLVQALEQLVQ--RKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 106 ~~~~~l~~~~~--~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
+......+=+. ++.++|+||+||+|=++. ..+.+.+. ........+.+|+|+||+.+...... ...+
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~---~v~~ai~Pd~vi~VmDasiGQaae~Q-------a~aF 236 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK---QVSKAIKPDEIIFVMDASIGQAAEAQ-------ARAF 236 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH---HHHhhcCCCeEEEEEeccccHhHHHH-------HHHH
Confidence 11111111111 256899999999996553 33433321 33456678999999999988765332 2334
Q ss_pred HHHhhcCEEEEeCCCCCC
Q 025133 183 HQIAFADVVILNKVDLVS 200 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~ 200 (257)
.+--.---++++|.|--.
T Consensus 237 k~~vdvg~vIlTKlDGha 254 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHA 254 (483)
T ss_pred HHhhccceEEEEecccCC
Confidence 443334568999999654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=91.85 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
..+.|+||||... +... .+.....+|.+++|+|+.... ..... .....+..++.+ .++++||+|+
T Consensus 80 ~~i~liDtPGh~~---f~~~-----~~~g~~~aD~aIlVVDa~~g~~~~qt~-----e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 80 RRVSFVDAPGHET---LMAT-----MLSGAALMDGALLVIAANEPCPQPQTK-----EHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred cEEEEEECCCHHH---HHHH-----HHHHHHHCCEEEEEEECCCCccccchH-----HHHHHHHHcCCCeEEEEEEcccc
Confidence 4688999999532 2211 122334579999999998643 11110 011222333333 5778999999
Q ss_pred CCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+.++.....+++...++... ...+++ +|++++.+++++++.+..
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 875432222344445444321 234555 899999999988887743
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=95.29 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++|+||+|+.
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~--------sl~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSR--------SLAACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHH--------HHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence 456789999998765433321 123578999999998754322210 0111223356789999999986
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
.... ....+++...+ ...+..-+..|++++.|++++++.+...
T Consensus 140 ~a~~-~~v~~ei~~~l-g~~~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 140 AADP-ERVKQEIEDVI-GIDASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred cccH-HHHHHHHHHHh-CCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 5321 01122232221 1122223458999999999999887433
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-07 Score=85.80 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=90.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---C-CCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchh
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---K-HGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~-~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..+++|+|+.|+||||++.+|... . .+++++++..|... .+....+...+. .+..+. . .....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR-igA~EQLk~ya~iLgv~v~---~-------a~d~~~ 418 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR-VGGREQLHSYGRQLGIAVH---E-------ADSAES 418 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc-ccHHHHHHHhhcccCceeE---e-------cCcHHH
Confidence 468999999999999999999753 2 25789999888643 222222221110 011000 0 011223
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+...+. +..++++|||||+|...... ..+.+. .+.... ....++|+++......+.. ....+...
T Consensus 419 L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~---~L~aa~-~~a~lLVLpAtss~~Dl~e------ii~~f~~~ 484 (559)
T PRK12727 419 LLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLN---WLRAAR-QVTSLLVLPANAHFSDLDE------VVRRFAHA 484 (559)
T ss_pred HHHHHH----HhccCCEEEecCCCcchhhHHHHHHHH---HHHHhh-cCCcEEEEECCCChhHHHH------HHHHHHhh
Confidence 444443 34568999999999865432 222111 111111 2356788888765444332 12223332
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
....+|+||+|.... +..+...+...+ .+|...+.|+
T Consensus 485 -~~~gvILTKlDEt~~------lG~aLsv~~~~~--LPI~yvt~GQ 521 (559)
T PRK12727 485 -KPQGVVLTKLDETGR------FGSALSVVVDHQ--MPITWVTDGQ 521 (559)
T ss_pred -CCeEEEEecCcCccc------hhHHHHHHHHhC--CCEEEEeCCC
Confidence 467899999998543 455555554433 3455445553
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=86.98 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=70.4
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+.+...++++|.+|+||||++|.|+ +.+++.++.-.+.+.... |..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~----------------------~~~~------- 81 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPM----------------------MVSR------- 81 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEE----------------------EEEE-------
Confidence 4566789999999999999999999 444444433222100000 0000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcc--cccccccceeeeeEEEE--EeccchHHH-HhhhccCCChhHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLW--LDDQLESAVRLDSIITV--VDAKNLLFQ-IDKYRHLSSYPEAI- 182 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~--~~~~~~~~~~~~~vi~v--vDa~~~~~~-~~~~~~~~~~~~~~- 182 (257)
...+..+.+|||||+.+.....+... +...+ ....++.+++| +|..+.... ..... .+...+
T Consensus 82 --------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk---~Iqe~FG 149 (313)
T TIGR00991 82 --------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIR---AITDSFG 149 (313)
T ss_pred --------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHH---HHHHHhh
Confidence 01245688999999987643222110 01111 12368899999 455444321 11110 011111
Q ss_pred HHHhhcCEEEEeCCCCCCcC
Q 025133 183 HQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~ 202 (257)
..+-...++++|+.|...++
T Consensus 150 ~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 150 KDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hhhhccEEEEEECCccCCCC
Confidence 33345578899999988543
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=88.71 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=92.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEE-----------EEecCCCccccc-chhhhhcCCCCceeeeeeecCCCcee
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIA-----------VILNEFGEEIGV-ERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~-----------ii~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
-.++|+|+-++|||||+|++.+...--+++ +.+.-+|.++.. +...+-. ...++...
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~--------kAvEI~~~--- 86 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN--------EAVEININ--- 86 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC--------cceEEecc---
Confidence 368999999999999999998420000333 444555532211 1111110 11111100
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhccccc----------------------ccccce-eeeeEE
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDD----------------------QLESAV-RLDSII 157 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~----------------------~~~~~~-~~~~vi 157 (257)
......+.||||+|+.....+..... +. ..+-.. ..+..+
T Consensus 87 ----------------~~~~~~VrlIDcvG~~v~GalG~~r~-~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgi 149 (492)
T TIGR02836 87 ----------------EGTKFKVRLVDCVGYTVKGALGYMEE-DKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGV 149 (492)
T ss_pred ----------------CCCcccEEEEECCCcccCCCccceec-cccccccCCcccccCchhhhhhhhHHHHHHhcCcEEE
Confidence 01235688999999765443321110 00 111122 567778
Q ss_pred EEE-ecc-------chHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEe--
Q 025133 158 TVV-DAK-------NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS-- 227 (257)
Q Consensus 158 ~vv-Da~-------~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s-- 227 (257)
+|. |++ .+...-. .+...+++++.|.++|+||+|-..++. ..+...+++-.....+.++
T Consensus 150 vVtTDgsi~dI~Re~y~~aEe------~~i~eLk~~~kPfiivlN~~dp~~~et-----~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 150 VVTTDGTITDIPREDYVEAEE------RVIEELKELNKPFIILLNSTHPYHPET-----EALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred EEEcCCCccccccccchHHHH------HHHHHHHhcCCCEEEEEECcCCCCchh-----HHHHHHHHHHhCCceEEEEHH
Confidence 888 885 2222111 134567888899999999999554432 3333344333332223333
Q ss_pred ecCCcChhhhhcCccCCCCC
Q 025133 228 VRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~ 247 (257)
..+..++..++...+|-++-
T Consensus 219 ~l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 219 SMRESDILSVLEEVLYEFPI 238 (492)
T ss_pred HcCHHHHHHHHHHHHhcCCc
Confidence 34456777777777766443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.3e-08 Score=87.98 Aligned_cols=174 Identities=21% Similarity=0.209 Sum_probs=93.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~----~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++|+|++|+||||++.+|..+ ..+.+++++..|+.. .+....+..... .++.. ..+....++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a~eqL~~~a~~~~vp~----------~~~~~~~~l 290 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGAVEQLKTYAKIMGIPV----------EVVYDPKEL 290 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHHHHHHHHHHHHhCCce----------EccCCHHhH
Confidence 58999999999999999999653 346899999998753 222222211100 01100 011223345
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..++|+|||||+|..... ...+.+ ...+.....-..+.+|+++......+... ...+..+.
T Consensus 291 ~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L--~~ll~~~~~~~~~~LVl~a~~~~~~l~~~------~~~f~~~~ 358 (424)
T PRK05703 291 AKALEQ----LRDCDVILIDTAGRSQRDKRLIEEL--KALIEFSGEPIDVYLVLSATTKYEDLKDI------YKHFSRLP 358 (424)
T ss_pred HHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHH--HHHHhccCCCCeEEEEEECCCCHHHHHHH------HHHhCCCC
Confidence 555443 346899999999975432 222211 11111111123667889987665543321 12222222
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.+-++++|.|.... ...+...+...+ .++...+.|+.=.++|.
T Consensus 359 -~~~vI~TKlDet~~------~G~i~~~~~~~~--lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 359 -LDGLIFTKLDETSS------LGSILSLLIESG--LPISYLTNGQRVPDDIK 401 (424)
T ss_pred -CCEEEEeccccccc------ccHHHHHHHHHC--CCEEEEeCCCCChhhhh
Confidence 46799999998654 344555555433 24554455543234443
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=91.21 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
..+.||||||-. .+.. ..+.....+|.+++|||+..+ ...... ........++.+ .++++||+|+
T Consensus 117 ~~i~~IDtPGH~---~fi~-----~m~~g~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHD---ILMA-----TMLNGAAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEecccc
Confidence 457899999942 2322 122345578999999999864 222111 012233445555 4679999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++..+.++++...++.. ....+++ +|+.++.|++.|++.+.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 87554333345555555442 2345666 89999999999998876
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=7e-09 Score=89.50 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=58.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|+||+|||||+|+|.+ .++ .+.+.|++++......+ .+ .+.-...|.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~----~~~-~~~n~pftTi~p~~g~v-------------~v---------~d~r~~~l~~~ 53 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK----AGA-EAANYPFCTIEPNVGIV-------------PV---------PDERLDKLAEI 53 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhC----CCC-ccccccccchhceeeeE-------------Ee---------ccchhhhHHHH
Confidence 47899999999999999994 333 45555665332211111 11 01111222222
Q ss_pred HH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 115 VQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 115 ~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.. +.....+.|+|+||+.......+.+. ...+.+..++|.+++|||+.
T Consensus 54 ~~~~k~~~~~i~lvD~pGl~~~a~~~~glg-~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 54 VKPKKIVPATIEFVDIAGLVKGASKGEGLG-NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hCCceeeeeEEEEEECCCcCCCCchhhHHH-HHHHHHHHhCCEEEEEEeCc
Confidence 21 01123589999999886543333222 23455667899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=75.74 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D~~ 199 (257)
..+-|++|||.....-+.+.+. + ....++++||.++....... .+..++.... .|.++.+||.|+.
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~-----~---ga~gaivlVDss~~~~~~a~-----~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILS-----R---GAVGAIVLVDSSRPITFHAE-----EIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHh-----C---CcceEEEEEecCCCcchHHH-----HHHHHHhhccCCCEEEEeeccccC
Confidence 5567999999765544444332 1 26788999999876553111 1223333333 5678889999999
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+... -+.+++.++..+-..+++ ..+..+.+..+-+...
T Consensus 135 ~a~p----pe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 135 DALP----PEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred CCCC----HHHHHHHHHhccCCCceeeeecccchhHHHHHHHH
Confidence 8754 678888887765344555 5666566665555444
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-08 Score=89.25 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=37.0
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCE-EEEeecCCcChhh-----hhcCccCCCCCCCcccccc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH-VIRSVRCQVDLSE-----VLNCRAYDATVNPIKLCSE 255 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~-i~~s~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~ 255 (257)
.|.++|+||+|.....+ .+..+.++ ++.. +.+|+..+.+++. +.+.....+..+|.+.+++
T Consensus 218 KPvI~VlNK~D~~~~~~---~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd 284 (396)
T PRK09602 218 KPMVIAANKADLPPAEE---NIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSE 284 (396)
T ss_pred CCEEEEEEchhcccchH---HHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCH
Confidence 57889999999764321 13333332 3444 4489999888766 4444455556666665553
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.6e-08 Score=88.54 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=62.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhcCE-EEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFADV-VILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~~v-ivlNK 195 (257)
.+..+.||||||..+ +... .......+|.+++|+|+..+... +....+..........++.+.+ +++||
T Consensus 83 ~~~~i~lIDtPGh~~---f~~~-----~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD---FIKN-----MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred CCeEEEEEECCChHH---HHHH-----HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 456789999999432 2221 12334578999999999875311 0000000001223445566764 79999
Q ss_pred CCCCC----cCCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhh
Q 025133 196 VDLVS----PERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 196 ~D~~~----~~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~ 236 (257)
+|... ++...+..+++...++...- ..+++ +|+.++.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99432 22223345556666655322 34555 89999888753
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=89.87 Aligned_cols=103 Identities=21% Similarity=0.189 Sum_probs=61.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|+||+|||||+|+|.+ .+ +.+.+.|++++......+. +. +.-...|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~----~~-~~v~nypftTi~p~~G~~~-------------v~---------d~r~~~l~ 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTK----AG-AEAANYPFCTIEPNVGVVP-------------VP---------DPRLDKLA 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhC----CC-CeecccccccccceEEEEE-------------ec---------cccchhhH
Confidence 4689999999999999999994 34 4566667753322111111 00 00011122
Q ss_pred HHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 113 QLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 113 ~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
++.. +.-...+.|+|+||+.......+.+. ...+.+..++|.+++|||+.
T Consensus 56 ~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg-~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 56 EIVKPKKIVPATIEFVDIAGLVKGASKGEGLG-NQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HhcCCccccCceEEEEECCCCCCCCChHHHHH-HHHHHHHHhCCEEEEEEeCC
Confidence 2111 01123589999999886543333222 34456677899999999985
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-08 Score=90.34 Aligned_cols=106 Identities=21% Similarity=0.073 Sum_probs=62.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
....-++|+|+||+|||||+|+|.+ .+ +.+.+-|+++.......+ ...+.-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~----~~-~~v~n~pftTi~p~~g~v----------------------~~~d~r~~ 71 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCK----QQ-VPAENFPFCTIDPNTARV----------------------NVPDERFD 71 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhc----Cc-ccccCCCCCcccceEEEE----------------------ecccchhh
Confidence 3444689999999999999999974 33 356666765322111110 11111112
Q ss_pred HHHHHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 110 ALEQLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 110 ~l~~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.|.++.. +.-+.++.|+||||+.......+.+. ...+....++|.+++|+|+.
T Consensus 72 ~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg-~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 72 WLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLG-NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHH-HHHHHHHHHCCEEEEEEeCC
Confidence 2222221 11245799999999886543322222 24456677899999999984
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=84.73 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=88.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++++|++|+||||++.+|... ..| ++++++..|... .+.-..+...+. .++ ....+..+.++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R-igA~EQLr~~AeilGV----------pv~~~~~~~Dl 325 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR-IGGHEQLRIYGKILGV----------PVHAVKDAADL 325 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc-hhHHHHHHHHHHHhCC----------CeeccCCchhH
Confidence 58999999999999999999863 334 589999988753 322222211100 000 00111223334
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHH-HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..+.++++|||+|..+.... .+.+. .+.........++|+|+......+... ...+.. .
T Consensus 326 ~~aL~~----L~d~d~VLIDTaGr~~~d~~~~e~~~---~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~-~ 391 (484)
T PRK06995 326 RLALSE----LRNKHIVLIDTIGMSQRDRMVSEQIA---MLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRG-P 391 (484)
T ss_pred HHHHHh----ccCCCeEEeCCCCcChhhHHHHHHHH---HHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhcc-C
Confidence 333332 34678999999997654322 22111 111111122378899998765543321 112222 2
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
..+-+|+||.|.... +..+...+...+ .+|...+.|
T Consensus 392 ~~~g~IlTKlDet~~------~G~~l~i~~~~~--lPI~yvt~G 427 (484)
T PRK06995 392 GLAGCILTKLDEAAS------LGGALDVVIRYK--LPLHYVSNG 427 (484)
T ss_pred CCCEEEEeCCCCccc------chHHHHHHHHHC--CCeEEEecC
Confidence 356789999997754 344444444432 234433444
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=77.66 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-+.||+|......+.... ...++.+++|+|..+.... +.... .+...+.+. ..|.++|.||.|+
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~--------~~~a~~~ilvydit~~~Sf-~~~~~--~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLS--------YPQTNVFIICFSIASPSSY-ENVRH--KWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred EEEEEEECCCchhhhhhhhhh--------ccCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHhhCCCCCEEEEEeChhh
Confidence 456799999975544332211 2357899999998765432 21100 011111111 3467889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..... -..++...+.++.+. ...+ .|++.+.|+.+++....
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred hcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCCHHHHHHHHH
Confidence 6542100 011222233333332 2455 78999999998887764
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-08 Score=88.45 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+-+-+|||||-.+.. ++.. ...-++.+++||||..+........ .-...+...+.+.|+||+|+-
T Consensus 125 ylLNLIDTPGHvDFs~EVsR---------slaac~G~lLvVDA~qGvqAQT~an-----f~lAfe~~L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSR---------SLAACDGALLVVDASQGVQAQTVAN-----FYLAFEAGLAIIPVLNKIDLP 190 (650)
T ss_pred eEEEeecCCCcccccceehe---------hhhhcCceEEEEEcCcCchHHHHHH-----HHHHHHcCCeEEEeeeccCCC
Confidence 456699999966553 2222 2335799999999999887654321 111233456778899999998
Q ss_pred CcCCCcchHHHHHHHHHHhC--CCCE-EEEeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEIN--SLAH-VIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~--~~a~-i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+++ .+.+...+.+++ |.++ +.+|++.|.+.++++.++.-.
T Consensus 191 ~ad-----pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 191 SAD-----PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred CCC-----HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence 875 577777776643 3344 559999999999998887543
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-07 Score=72.72 Aligned_cols=101 Identities=8% Similarity=0.092 Sum_probs=55.7
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D~ 198 (257)
+.+-||+|.... .. ....+.+++|+|..+........ . +...+.+. ..|.++|.||.|+
T Consensus 49 l~i~D~~g~~~~-~~------------~~~~~~~ilv~d~~~~~sf~~~~-~---~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 49 LLIRDEGGAPDA-QF------------ASWVDAVIFVFSLENEASFQTVY-N---LYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred EEEEECCCCCch-hH------------HhcCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 557899998532 11 12357899999988755432211 0 11222222 1356788999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+..-..+...++.++... ..++ .|++++.|+++++...
T Consensus 112 ~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 112 SESNPRVIDDARARQLCADMKR-CSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred hhcCCcccCHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHHHHH
Confidence 5321110111222333333322 3455 7999999999988654
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=76.37 Aligned_cols=147 Identities=26% Similarity=0.391 Sum_probs=86.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcc----cccch---------hhhh-----------------
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEE----IGVER---------AMIN----------------- 80 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~----~~~d~---------~~~~----------------- 80 (257)
.++|+|.-|+||||+...|+.+ ..+.++.++..|+-.. +++.. .+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 5899999999999998886543 3458999998886210 11110 0000
Q ss_pred --------------cCCCCce-eeeeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHhcccc
Q 025133 81 --------------EGEGGAL-VEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETT-GLANPAPLASVLWLD 144 (257)
Q Consensus 81 --------------~~~~~~~-~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~-G~~~~~~~~~~~~~~ 144 (257)
.+.-+.+ +....+...||.|.. ..-+...|+++. ....+++++||= |+-+..
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~-~allR~~l~~l~--~~~~e~VivDtEAGiEHfg--------- 149 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM-NALLRRLLRHLI--LNRYEVVIVDTEAGIEHFG--------- 149 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH-HHHHHHHHHHHh--cccCcEEEEecccchhhhc---------
Confidence 0001111 122334478999863 222333333333 456899999984 553321
Q ss_pred cccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCCCC
Q 025133 145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 199 (257)
Q Consensus 145 ~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D~~ 199 (257)
......+|.++.|+|++.-.-.... .+.+...+++ ....+|+||+|..
T Consensus 150 --Rg~~~~vD~vivVvDpS~~sl~tae-----ri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 --RGTIEGVDLVIVVVDPSYKSLRTAE-----RIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred --cccccCCCEEEEEeCCcHHHHHHHH-----HHHHHHHHhCCceEEEEEeeccch
Confidence 1234568999999999854322111 1344556677 6778899999855
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-07 Score=69.88 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+-+.|++|..........+ ....+.+++++|..+.... .... .+...+.... .+.+++.||.|
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ii~fd~~~~~S~-~~~~---~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIF--------YRNSDAIIIVFDVTDEESF-ENLK---KWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHH--------HTTESEEEEEEETTBHHHH-HTHH---HHHHHHHHHSTTTSEEEEEEETTT
T ss_pred ccccccccccccccccccccc--------ccccccccccccccccccc-cccc---cccccccccccccccceeeecccc
Confidence 456799999975544433221 2346889999998865433 2211 1222222222 35677779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++...+.++.+ .+.+ .|++.+.++.+++...
T Consensus 116 ~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 116 LSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp GGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHHH
T ss_pred ccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHHH
Confidence 8874443 2456666666655 5666 7888899998877543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-08 Score=78.28 Aligned_cols=92 Identities=25% Similarity=0.305 Sum_probs=58.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc-----hhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d-----~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
++.|+|++|||||||+++|+.. ..|.+++++.++.+. ..++ ...... . ......+.++|.||.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~--a---ga~~v~~~~~~~~~~~~~~ 74 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHRE--A---GADQVIVASSRRYAFMHET 74 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHh--C---CCCEEEEecCCeEEEEEec
Confidence 5789999999999999999875 458899999987553 3222 222221 0 1234566778888763321
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCC
Q 025133 107 -LVQALEQLVQRKERLDHILLETTGL 131 (257)
Q Consensus 107 -~~~~l~~~~~~~~~~~~ilIDt~G~ 131 (257)
-...+.+++.+....|++|||.-+.
T Consensus 75 ~~~~~l~~ll~~~~~~D~vlVEG~k~ 100 (155)
T TIGR00176 75 QEERDLEALLDRLPDLDIILVEGFKD 100 (155)
T ss_pred CCCcCHHHHHhhCCCCCEEEECCCCC
Confidence 1223444443334589999997663
|
This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.1e-07 Score=80.97 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=91.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---C-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee--eccch
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---K-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKH 105 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~ 105 (257)
-.+++++|++|+||||++++|... . ...+++++..+.-. ++.-..+...+ .+. |.-+ +....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r-igalEQL~~~a----------~il-Gvp~~~v~~~~ 258 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR-IGGHEQLRIYG----------KLL-GVSVRSIKDIA 258 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hhHHHHHHHHH----------HHc-CCceecCCCHH
Confidence 358999999999999999999753 1 23577887776543 32221111110 000 1111 12233
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
++...+.. ..+.++++|||+|+..... ..+.+. .+.........++|+|+......+... ...+..
T Consensus 259 dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~---~l~~~~~~~~~~LVl~at~~~~~~~~~------~~~f~~ 325 (420)
T PRK14721 259 DLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIA---MLSQCGTQVKHLLLLNATSSGDTLDEV------ISAYQG 325 (420)
T ss_pred HHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHH---HHhccCCCceEEEEEcCCCCHHHHHHH------HHHhcC
Confidence 44444333 4578999999999876432 333221 122222234678999999766654432 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
-..+-+|++|.|-... +..+...+...+ .++...+.|
T Consensus 326 -~~~~~~I~TKlDEt~~------~G~~l~~~~~~~--lPi~yvt~G 362 (420)
T PRK14721 326 -HGIHGCIITKVDEAAS------LGIALDAVIRRK--LVLHYVTNG 362 (420)
T ss_pred -CCCCEEEEEeeeCCCC------ccHHHHHHHHhC--CCEEEEECC
Confidence 2357899999998764 344555554432 234443444
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=86.19 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+..... ......+|.+++|+|+.......... +.........|.++++||+|+
T Consensus 78 ~~~~inliDTPG~~df~~~~--------~~~l~~aD~aIlVvDa~~gv~~~t~~-----l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDT--------YRTLTAVDNCLMVIDAAKGVETRTRK-----LMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHHHH--------HHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEEEEECccc
Confidence 45678899999985332211 12234589999999998753322111 222333445688999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
...+. .+.++.++..+
T Consensus 145 ~~~~~-~~ll~~i~~~l 160 (527)
T TIGR00503 145 DIRDP-LELLDEVENEL 160 (527)
T ss_pred cCCCH-HHHHHHHHHHh
Confidence 75431 12344454444
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-08 Score=96.29 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.||||||..+..... ......+|.+++|+|+..+....... +.....+.+.|.++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~--------~~al~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEV--------TAALRVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHH--------HHHHhcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCEEEEEEChhhh
Confidence 4558899999987632221 22345689999999999865543321 2223333456889999999997
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.8e-07 Score=85.15 Aligned_cols=83 Identities=22% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.++||||..+...... .....+|.+++|+|+......... .+.....+.+.|.++++||+|+
T Consensus 77 ~~~~inliDTPG~~df~~~~~--------~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTY--------RTLTAVDSALMVIDAAKGVEPQTR-----KLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred CCEEEEEEECCCchhhHHHHH--------HHHHHCCEEEEEEecCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCcc
Confidence 356688999999765433221 122357999999999865432211 0223334456788999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
..... .+.+++++..+
T Consensus 144 ~~a~~-~~~l~~i~~~l 159 (526)
T PRK00741 144 DGREP-LELLDEIEEVL 159 (526)
T ss_pred cccCH-HHHHHHHHHHh
Confidence 76542 12344454444
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-07 Score=73.40 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... .....+.+++|+|..+......... .+...+.+. ..+.++|.||+|+
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~--------~~~~ad~~ilvyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEECCCchhhHhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEeEChhh
Confidence 44679999997543333221 1235789999999886543221100 012222222 2466888899998
Q ss_pred CCc----------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCc
Q 025133 199 VSP----------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCR 241 (257)
Q Consensus 199 ~~~----------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~ 241 (257)
... .+..-..++..++.++.+ ....+ .|++++.+ +++++...
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHHcC-CCEEEECCcCCCCCCHHHHHHHH
Confidence 542 110012334444444432 22455 78999998 99887654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=74.52 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|..+...+... .....+.+++++|...-........ .+...+.+. ..+.++|-||+|+
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilvyd~~~~~Sf~~~~~---~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLISRASYENVLK---KWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred EEEEEEECCCCccccccchh--------hcCCCcEEEEEEEcCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence 44679999997654433221 1235689999999875443221100 012222222 2466888899999
Q ss_pred CCcCC--------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPER--------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~--------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+... ..-..++..++.++. .....+ .|++.+.++++++....-
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 118 RDDKQYLADHPGASPITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred ccChhhhhhccCCCCCCHHHHHHHHHHc-CCCEEEECCCCcccCHHHHHHHHHH
Confidence 65321 001133344444433 223455 789999999999877643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=73.95 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=58.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... ....++.+++|+|..+......... .+...+.+. ..+.++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~~ilvfdit~~~Sf~~~~~---~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPL--------CYPDSDAVLICFDISRPETLDSVLK---KWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEEEECCCchhhhhcchh--------hcCCCCEEEEEEECCChhhHHHHHH---HHHHHHHHHCCCCCEEEEEEChhh
Confidence 44679999996433222111 1235689999999876543221100 022222222 2356778899998
Q ss_pred CCc----------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCc
Q 025133 199 VSP----------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCR 241 (257)
Q Consensus 199 ~~~----------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~ 241 (257)
.+. .+..-..++..++.++.+ ....+ .|++++.+ +.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~-~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLG-AEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhC-CCEEEECccCcCCcCHHHHHHHH
Confidence 542 010011234444444332 22444 78998884 99887654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9e-08 Score=86.94 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=85.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+...+..++.|+||+|||||+|.+..++.. +.+-+-+ +..++ .
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-----vqpYaFT----TksL~----------------------------v 207 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-----VQPYAFT----TKLLL----------------------------V 207 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-----cCCcccc----cchhh----------------------------h
Confidence 456778999999999999999999864211 1111111 11110 0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhccccc--ccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDD--QLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~--~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+. ..=-.|.+|||||+- +|.+-.+.+.+.. .+.+. + ..|+|+.|-+..-.+.-. .....+..+
T Consensus 208 GH~d-----ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL-r-aaVLYfmDLSe~CGySva-----~QvkLfhsI 275 (620)
T KOG1490|consen 208 GHLD-----YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL-R-SAVLYFMDLSEMCGYSVA-----AQVKLYHSI 275 (620)
T ss_pred hhhh-----hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh-h-hhheeeeechhhhCCCHH-----HHHHHHHHh
Confidence 0000 011247799999955 4554433332111 12222 2 368999998754332100 011122222
Q ss_pred -----hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChh
Q 025133 186 -----AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 186 -----~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~ 235 (257)
..+.++|+||+|....+.+.+.-+++-..+.... ..+++ .|....+|+-
T Consensus 276 KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~-~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 276 KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG-NVKVVQTSCVQEEGVM 330 (620)
T ss_pred HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc-CceEEEecccchhcee
Confidence 2468999999999998887555555555555432 24555 4555555543
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-07 Score=75.80 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=60.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... ....++.+++|+|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 61 v~l~iwDTaG~e~~~~~~~~--------~~~~ad~vIlVyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPL--------CYSDSDAVLLCFDISRPETVDSALK---KWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred EEEEEEeCCCchhhHHHHHH--------HcCCCcEEEEEEECCChHHHHHHHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 45779999996543333221 1235789999999986544321100 012222222 2356888999998
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
.... +..-..++..++.++.+ ....+ .|++++. ++++++...
T Consensus 130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~-~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 130 RTDLSTLMELSNQKQAPISYEQGCALAKQLG-AEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccchhhhhccccCCcCCHHHHHHHHHHcC-CCEEEEccCCcCCcCHHHHHHHH
Confidence 5420 01112344555555443 21344 7899887 799888765
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-07 Score=79.70 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=32.8
Q ss_pred ceeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 150 AVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
..++++++|++++.. .+...+ ...++++. -..+.|+.|+|.++.++....-..+...++
T Consensus 111 D~RVH~cLYfI~pt~~~L~~~D--------i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 111 DTRVHACLYFIPPTGHGLKPLD--------IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp ---EEEEEEEE-TTSSSS-HHH--------HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEcCCCccchHHH--------HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHH
Confidence 468999999999863 333333 12445553 245679999999998774333334444444
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=71.13 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
++|.|..|+|||||+++|+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999963
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=76.06 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+...+ ....+.+++++|......... ... +...+... ..+.+++.||+|+
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGY--------YIKGQCAIIMFDVTSRITYKN-VPN---WHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hccCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhCCCCCEEEEEECccC
Confidence 446689999965443332211 123578899999986443211 100 11111111 2355678999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .......+. .. ...+ .|++++.++++.+..+.
T Consensus 126 ~~~~~~----~~~~~~~~~-~~-~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 126 KDRQVK----ARQITFHRK-KN-LQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred ccccCC----HHHHHHHHH-cC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 654321 122232332 22 3444 78888888887665543
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-07 Score=71.31 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=81.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
--.+.+.|+.||||||++++|++. .+-.+++-.|- . +... +
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~----~~~~i~pt~gf----~------------Iktl-~------------------ 56 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE----DTDTISPTLGF----Q------------IKTL-E------------------ 56 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC----CccccCCccce----e------------eEEE-E------------------
Confidence 446889999999999999999953 32333333331 1 0000 0
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccC-CChhHHHHHH-hhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL-SSYPEAIHQI-AFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~-~~~~~~~~ql-~~~~ 189 (257)
...+.+.+-|-.|......+.... ....+.+|+|+|.+.... ++..... ..+.. -.++ +.+.
T Consensus 57 ------~~~~~L~iwDvGGq~~lr~~W~nY--------festdglIwvvDssD~~r-~~e~~~~L~~lL~-eerlaG~~~ 120 (185)
T KOG0073|consen 57 ------YKGYTLNIWDVGGQKTLRSYWKNY--------FESTDGLIWVVDSSDRMR-MQECKQELTELLV-EERLAGAPL 120 (185)
T ss_pred ------ecceEEEEEEcCCcchhHHHHHHh--------hhccCeEEEEEECchHHH-HHHHHHHHHHHHh-hhhhcCCce
Confidence 335678899999976655544322 235689999999964322 2221110 00111 2344 4578
Q ss_pred EEEEeCCCCCCcCCCcchHHHHH--HHHHHhCCCC--EEE-EeecCCcCh
Q 025133 190 VVILNKVDLVSPERSGDSLDELE--KEIHEINSLA--HVI-RSVRCQVDL 234 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~--~~l~~~~~~a--~i~-~s~~~~~~~ 234 (257)
+++.||.|+.+.-. .+.+. -.+..+.+.. +++ -++.++.++
T Consensus 121 Lvlank~dl~~~l~----~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 121 LVLANKQDLPGALS----LEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEecCcCccccC----HHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 88999999985432 23332 2234443333 344 577777433
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-06 Score=67.89 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=84.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC--ce--eeeeeecCCCceeeccchhHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG--AL--VEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~--~~--~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+.+..|..|+||||+.-.|...- ++++++-.|++. .+.+..+-...... .. ......-.-.|..+.....+..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l--~~vlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL--KNVVLADCDVDA-PNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH--hCcEEEECCCCC-CchhhhcCCCccccccceecCCceEEchhhhccccchHHHHH
Confidence 56788999999999999997654 788999988753 22111000000000 00 0000000000111111122333
Q ss_pred HHHHHHH---hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 110 ALEQLVQ---RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 110 ~l~~~~~---~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.+.+.+. ...++|+++|||||...... .. ....+|.++.++.+....... . ......+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~viiDtpp~~~~~~-~~---------~l~~aD~vliv~~~~~~~~~~--~---~~~~~~l~~~~ 143 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIGCPV-IA---------SLTGADAALLVTEPTPSGLHD--L---ERAVELVRHFG 143 (179)
T ss_pred HHHHHHHHhhhhcCCCEEEEECcCCCcHHH-HH---------HHHcCCEEEEEecCCcccHHH--H---HHHHHHHHHcC
Confidence 3333321 23689999999997554321 11 123468899999988542211 0 01223344445
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
.+..+|+||+|.-... ..++++.+++.
T Consensus 144 ~~~~vV~N~~~~~~~~-----~~~~~~~~~~~ 170 (179)
T cd03110 144 IPVGVVINKYDLNDEI-----AEEIEDYCEEE 170 (179)
T ss_pred CCEEEEEeCCCCCcch-----HHHHHHHHHHc
Confidence 5568899999865432 34556666654
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=88.32 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=50.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.....|.++++||+|+.
T Consensus 72 ~~~i~liDtPG~~df~~~~~--------~~l~~aD~~ilVvd~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVE--------RSLRVLDGAVVVFDAVTGVQPQTET-----VWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred CEEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEEEEECCCCC
Confidence 56788999999865433222 1223568999999998754322211 1223344567889999999988
Q ss_pred CcCCCcchHHHHHHHH
Q 025133 200 SPERSGDSLDELEKEI 215 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l 215 (257)
..+ ..+.+++++..+
T Consensus 139 ~~~-~~~~~~~i~~~l 153 (687)
T PRK13351 139 GAD-LFKVLEDIEERF 153 (687)
T ss_pred CCC-HHHHHHHHHHHH
Confidence 753 223445554444
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-07 Score=76.96 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=66.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCC--CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~--~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
--+++.|..|+|||||+++|..... +....+.+..++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------------- 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY----------------------------------- 50 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-----------------------------------
Confidence 3578999999999999999997421 223233333333200000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
....+..++||+|..+...+.... ....+.++.++|............. +...+... ..
T Consensus 51 -------~~~~~~~~~Dt~gq~~~~~~~~~y--------~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~l~~~~~~~~ 112 (219)
T COG1100 51 -------RRNIKLQLWDTAGQEEYRSLRPEY--------YRGANGILIVYDSTLRESSDELTEE---WLEELRELAPDDV 112 (219)
T ss_pred -------CCEEEEEeecCCCHHHHHHHHHHH--------hcCCCEEEEEEecccchhhhHHHHH---HHHHHHHhCCCCc
Confidence 012447799999987655554322 1345678888887753322221110 12222222 24
Q ss_pred cCEEEEeCCCCCCcC
Q 025133 188 ADVVILNKVDLVSPE 202 (257)
Q Consensus 188 ~~vivlNK~D~~~~~ 202 (257)
+.+++.||+|+....
T Consensus 113 ~iilv~nK~Dl~~~~ 127 (219)
T COG1100 113 PILLVGNKIDLFDEQ 127 (219)
T ss_pred eEEEEecccccccch
Confidence 677888999999874
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=77.77 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHhhcCEEEE
Q 025133 119 ERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVIL 193 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~~~~vivl 193 (257)
.+..+.+|||||+.++. ...+.+. +........++.+++|+...++.......-. .+...+ ..+-.-.+||+
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~-~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~--~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIK-RCLSLCSPGPHAFLLVIPLGRFTEEDREVLE--LLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHH-HHHHHTTT-ESEEEEEEETTB-SHHHHHHHH--HHHHHHCGGGGGGEEEEE
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHH-HHHHhccCCCeEEEEEEecCcchHHHHHHHH--HHHHHccHHHHhHhhHHh
Confidence 34668899999987642 2222221 1111123467889999999877543222100 011111 12223457788
Q ss_pred eCCCCCCcCCCcchHH-----HHHHHHHHhCCCC
Q 025133 194 NKVDLVSPERSGDSLD-----ELEKEIHEINSLA 222 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~-----~~~~~l~~~~~~a 222 (257)
+..|..........+. .+.+.+++.....
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 9999887765322222 3555566555543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=75.40 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-|.||+|......+.... ....+.+++|+|.......... . .+...+.+. ..|.++|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~ilV~D~t~~~S~~~i-~---~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGY--------YIQGQCAIIMFDVTARVTYKNV-P---NWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hcCCCEEEEEEECCChHHHHHH-H---HHHHHHHHhCCCCCEEEEEECccc
Confidence 446799999975443333211 2246789999999876543221 0 012222221 2467889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .+.+ . +.+.+. ..++ .|++.+.|+.+++..+.
T Consensus 112 ~~~~v~---~~~~-~-~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 112 KDRKVK---AKSI-T-FHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred ccccCC---HHHH-H-HHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 643211 1222 2 222233 3444 89999999998887764
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=75.00 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.++++|+||+|||||+|+|+ +.+.+.+...+|+
T Consensus 104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~ 136 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGE 136 (157)
T ss_pred EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCe
Confidence 56799999999999999999 4555677777775
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=81.93 Aligned_cols=157 Identities=21% Similarity=0.217 Sum_probs=97.9
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++.+.|----|||||+.++-+. .+...|.|- ++.+.= . ...++..
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGG---ITQhIG------A---~~v~~~~------------ 51 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGG---ITQHIG------A---YQVPLDV------------ 51 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcC------ccccccCCc---eeeEee------e---EEEEecc------------
Confidence 357899999999999999999999632 344444442 111100 0 0111100
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
...+.+.|+||||-. .|..+. .+...-.|.+++|||+..+..+.... .....+..+-|
T Consensus 52 ---------~~~~~itFiDTPGHe---AFt~mR-----aRGa~vtDIaILVVa~dDGv~pQTiE-----AI~hak~a~vP 109 (509)
T COG0532 52 ---------IKIPGITFIDTPGHE---AFTAMR-----ARGASVTDIAILVVAADDGVMPQTIE-----AINHAKAAGVP 109 (509)
T ss_pred ---------CCCceEEEEcCCcHH---HHHHHH-----hcCCccccEEEEEEEccCCcchhHHH-----HHHHHHHCCCC
Confidence 023668899999943 222211 12234468999999999877664432 23344556678
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN-------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++++||+|+.+.. ...+...+.+.. ....++ .|++++.|+++|+..++
T Consensus 110 ~iVAiNKiDk~~~n-----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 110 IVVAINKIDKPEAN-----PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred EEEEEecccCCCCC-----HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 89999999999653 355555554432 122233 79999999999988764
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=72.95 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... .....+.+++|+|............. +.....+. ..|.++|.||+|+
T Consensus 49 v~L~iwDt~G~e~~~~l~~~--------~~~~~d~illvfdis~~~Sf~~i~~~---w~~~~~~~~~~~piiLVgnK~DL 117 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPL--------AYPDSDAVLICFDISRPETLDSVLKK---WQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHH--------hccCCCEEEEEEECCCHHHHHHHHHH---HHHHHHhhCCCCCEEEEEECccc
Confidence 45678999997543333221 12467899999999876432111000 11111111 2467888899999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
...... .-..++...+.++ ......+ .|++++. ++.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~pIs~e~g~~~ak~-~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 118 RTDLATLRELSKQRLIPVTHEQGTVLAKQ-VGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred ccchhhhhhhhhccCCccCHHHHHHHHHH-cCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 653110 0011222232333 2323566 5788766 588887765
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=80.21 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=95.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++-|.|--.=|||||+.+|-+. .+...+.|- ++.. -|. ....+++|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks------~VAA~E~GG---ITQh------IGA---F~V~~p~G----------- 200 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKS------SVAAGEAGG---ITQH------IGA---FTVTLPSG----------- 200 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhC------ceehhhcCC---ccce------ece---EEEecCCC-----------
Confidence 348899999999999999999999642 344444442 1111 001 22333333
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
-.+.|.||||-.-...+.. +...-.|.+++||-|..+..+.... .....+...-|
T Consensus 201 ------------~~iTFLDTPGHaAF~aMRa--------RGA~vtDIvVLVVAadDGVmpQT~E-----aIkhAk~A~Vp 255 (683)
T KOG1145|consen 201 ------------KSITFLDTPGHAAFSAMRA--------RGANVTDIVVLVVAADDGVMPQTLE-----AIKHAKSANVP 255 (683)
T ss_pred ------------CEEEEecCCcHHHHHHHHh--------ccCccccEEEEEEEccCCccHhHHH-----HHHHHHhcCCC
Confidence 3467999999543333321 2344568899999888766543321 12222333456
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHH-------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~-------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++.+||+|..... .+.+.+.|-. +.....++ +|+.++.|++.|.+++
T Consensus 256 iVvAinKiDkp~a~-----pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 256 IVVAINKIDKPGAN-----PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred EEEEEeccCCCCCC-----HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHH
Confidence 78899999977553 4555544433 34444555 8999999999888776
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=81.24 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhcC-EEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFAD-VVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~~-vivlNK 195 (257)
.+..+.||||||..+..... ......+|.+++|+|+...... .....+..........++.+. ++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~--------~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNM--------ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHH--------HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 35678899999954332211 1234568999999999863110 000000000122234456655 667999
Q ss_pred CCCCCc----CCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChh
Q 025133 196 VDLVSP----ERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 196 ~D~~~~----~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
+|+.+. +...+.++++...+++..- ..+++ +|+..+.++.
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 998732 1122345666676766441 23444 8999988874
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-07 Score=76.44 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH-HHHHHhhcCEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQIAFADVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~ql~~~~vivlNK~D~ 198 (257)
.-..+|-||||+.+....-.... .....-..++|.++.++|+..-.-..+... +.. ...+.....++++|-+|.
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r-~~~~d~l~~~DLvL~l~~~~draL~~d~~f----~~dVi~~~~~~~~i~~VtQ~D~ 160 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHR-QLYRDYLPKLDLVLWLIKADDRALGTDEDF----LRDVIILGLDKRVLFVVTQADR 160 (296)
T ss_pred ccceEEecCCCcccchhhhHHHH-HHHHHHhhhccEEEEeccCCCccccCCHHH----HHHHHHhccCceeEEEEehhhh
Confidence 34578999999998543321110 112233457889999999975332222110 011 123344677899999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
.-+
T Consensus 161 a~p 163 (296)
T COG3596 161 AEP 163 (296)
T ss_pred hcc
Confidence 754
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-07 Score=74.45 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=73.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+-++++|+.+||||+|.-.|... ..+-.+.+.+|..... .
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSiepn~a~~-------------------r---------------- 78 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIEPNEATY-------------------R---------------- 78 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcC--CccCeeeeeccceeeE-------------------e----------------
Confidence 34478999999999999999999753 1222455555442000 0
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
.+.-..-+||.||-..-...... .+.+..++..+|||||+..+....+.. .+++-+
T Consensus 79 --------~gs~~~~LVD~PGH~rlR~kl~e-----~~~~~~~akaiVFVVDSa~f~k~vrdv------aefLydil~~~ 139 (238)
T KOG0090|consen 79 --------LGSENVTLVDLPGHSRLRRKLLE-----YLKHNYSAKAIVFVVDSATFLKNVRDV------AEFLYDILLDS 139 (238)
T ss_pred --------ecCcceEEEeCCCcHHHHHHHHH-----HccccccceeEEEEEeccccchhhHHH------HHHHHHHHHhh
Confidence 11112459999996654333322 234556788999999999887665543 222211
Q ss_pred ----HhhcCEEEEeCCCCCCcCC
Q 025133 185 ----IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 ----l~~~~vivlNK~D~~~~~~ 203 (257)
-..+.+|+-||.|+..+..
T Consensus 140 ~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 140 RVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred ccccCCCCEEEEecchhhhhcCc
Confidence 1124566789999987654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-07 Score=74.46 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|+||+|||||+|+|+ +.+.+.+.+.+|.
T Consensus 118 ~~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~ 151 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLK----RSRACNVGATPGV 151 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHh----CcccceecCCCCe
Confidence 368999999999999999999 5566677777886
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-07 Score=85.14 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|.+|+||||++|.|+.
T Consensus 120 rIvLVGKTGVGKSSLINSILG 140 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFG 140 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999994
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=85.10 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+.++.||||||..+...... .....+|.+++|+|+.......... ........+.+.++++||+|+
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~--------~~l~~aD~vllvvd~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVE--------RALRVLDGAVVVVCAVGGVEPQTET-----VWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHH--------HHHHHhCeEEEEEeCCCCcCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 467899999999865322211 1233579999999998754332211 122333446788999999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 864
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-07 Score=90.71 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+-||||||..+..... ......+|.+++|+|+..+....... +.......+.|.++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~--------~~al~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHH--------HHHHhhcCEEEEEEECCCCCcccHHH-----HHHHHHHCCCCEEEEEECCccc
Confidence 3445699999976543222 12334579999999999765433321 2223334456889999999998
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.5e-07 Score=86.81 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+.||||||..+...... .....+|.+++|+|+..+....... +.....+.+.+.++++||+|..
T Consensus 86 ~~~i~liDtPG~~df~~~~~--------~~l~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVT--------RAMRAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHH--------HHHHhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCCeEEEEECchhh
Confidence 46678999999877532221 2234579999999998764432211 1222233455779999999987
Q ss_pred C
Q 025133 200 S 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 153 ~ 153 (731)
T PRK07560 153 I 153 (731)
T ss_pred c
Confidence 4
|
|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4e-06 Score=73.89 Aligned_cols=192 Identities=25% Similarity=0.297 Sum_probs=114.7
Q ss_pred cccCcccCCCcceeEEEEEec-CCCcHHHHHHHHHc--cCCCCeEEEEecCC---Ccccccchhhhhc----CCCCceee
Q 025133 20 EFSNSHENDDVSVGVTVITGF-LGAGKSTLVNYILN--GKHGKRIAVILNEF---GEEIGVERAMINE----GEGGALVE 89 (257)
Q Consensus 20 ~~~~~~~~~~~~~~vv~i~G~-~gsGKSTli~~Ll~--~~~~~~v~ii~~~~---g~~~~~d~~~~~~----~~~~~~~~ 89 (257)
.+++..-......|++.|+|. .|+|||+.-+.+.+ +..|.+++++.+-. |.++......+.. +......+
T Consensus 114 ~~gP~et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~e 193 (449)
T COG2403 114 ELGPKETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDE 193 (449)
T ss_pred EeCccHHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchh
Confidence 345544456678899988885 89999998887765 24588998888631 1111111111111 11011111
Q ss_pred eeeec-----CCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 90 EWVEL-----ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 90 ~~~~l-----~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
...++ .++.. .-..++...+.+-.. -.|+|+.|-.|-.-| ....|.-|.|+||.+
T Consensus 194 ereeye~~I~tg~~v--lAGvdy~~vlke~~~---~aD~IlwdGgnndfP---------------fvkpd~~Ivvvda~r 253 (449)
T COG2403 194 EREEYESYIPTGGGV--LAGVDYGTVLKEGEK---EADFILWDGGNNDFP---------------FVKPDLHIVVVDALR 253 (449)
T ss_pred hHHHHhhccccccce--EeeeeHHHHHHHHhh---hccEEEEeCCCCCCC---------------cccCCeeEEEecCCC
Confidence 10000 11111 112345555544332 348888886665433 234688899999998
Q ss_pred hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEe--ecCCcChhhhhcCcc
Q 025133 165 LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS--VRCQVDLSEVLNCRA 242 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s--~~~~~~~~~l~~~~~ 242 (257)
....+..+... ..++.||++++||+|....++ +.++.+.++++||.|.|+.+ ...-....++-+...
T Consensus 254 pg~ei~~~pGe-------~~irlAD~VIItkveea~~~k----vrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~~ieGKrv 322 (449)
T COG2403 254 PGEEIGSFPGE-------LRIRLADLVIITKVEEAMAEK----VRKIVRNIEEINPKAEVILAASVFRPDPPEDIEGKRV 322 (449)
T ss_pred CchhhccCCCc-------eeeeeccEEEEecccccchHH----HHHHHHHHHhhCCCcEEEecccccccCChhhcCCcEE
Confidence 66655543221 257889999999999988764 78999999999999999865 333344555555543
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-07 Score=80.47 Aligned_cols=33 Identities=39% Similarity=0.592 Sum_probs=30.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.++|+|.||+||||+||+|+ +++.+.+++.||.
T Consensus 134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~ 166 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGT 166 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCce
Confidence 49999999999999999999 6777999999996
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=85.06 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
..++++.|+||||..+...... .....+|.+++|+|+.......... +.....+...+.++++||+|
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~--------~al~~aD~~llVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVT--------RAMRAVDGAIVVVCAVEGVMPQTET-----VLRQALKENVKPVLFINKVD 149 (720)
T ss_pred CCceEEEEEeCCCccccHHHHH--------HHHHhcCEEEEEEecCCCCCccHHH-----HHHHHHHcCCCEEEEEEChh
Confidence 3467889999999876432221 2234579999999998654321110 11122233457789999999
Q ss_pred CCCc
Q 025133 198 LVSP 201 (257)
Q Consensus 198 ~~~~ 201 (257)
....
T Consensus 150 ~~~~ 153 (720)
T TIGR00490 150 RLIN 153 (720)
T ss_pred cccc
Confidence 8753
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=70.02 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=33.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++++.|+|+.|||||||+.+|+.. .+|.+++++.+...
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4689999999999999999999874 56899999987644
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=72.94 Aligned_cols=88 Identities=23% Similarity=0.218 Sum_probs=59.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
..+++.|||.+|||||+..+..- ..+.....+.+-||. + +
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGv-i--------------------~---------------- 105 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGV-I--------------------H---------------- 105 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecce-E--------------------E----------------
Confidence 47999999999999999999741 223344444455552 1 1
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
.++..+.++|.||+.+......... .+.......+|.++.|+||+...
T Consensus 106 --------y~ga~IQllDLPGIieGAsqgkGRG-RQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 106 --------YNGANIQLLDLPGIIEGASQGKGRG-RQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred --------ecCceEEEecCcccccccccCCCCC-ceEEEEeecccEEEEEecCCcch
Confidence 3345677999999887655443222 23445566789999999998643
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-07 Score=77.86 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=95.1
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~-~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
..+.|.+++.|.+|+|||+|||.+++.. .++-.+. .+|.+-.+. |
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k---~~~~t~k~K~g~Tq~in-------------------------~------ 178 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVK---NIADTSKSKNGKTQAIN-------------------------H------ 178 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhh---hhhhhcCCCCccceeee-------------------------e------
Confidence 4566899999999999999999998631 1111111 333210000 0
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCC-----CC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 108 VQALEQLVQRKERLDHILLETTGL-----AN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~-----~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..-+..+.+||.||+ .. +.++.. +...++-+...+-.++.++|++-.....|.. +..
T Consensus 179 ---------f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~--~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-----~i~ 242 (320)
T KOG2486|consen 179 ---------FHVGKSWYEVDLPGYGRAGYGFELPADWDK--FTKSYLLERENLVRVFLLVDASVPIQPTDNP-----EIA 242 (320)
T ss_pred ---------eeccceEEEEecCCcccccCCccCcchHhH--hHHHHHHhhhhhheeeeeeeccCCCCCCChH-----HHH
Confidence 012356889999993 32 222221 1123344445667889999999877776654 456
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCCC--cchHHH----HHHHHHHhCCCC-E-EEEeecCCcChhhhhcCc
Q 025133 181 AIHQIAFADVVILNKVDLVSPERS--GDSLDE----LEKEIHEINSLA-H-VIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~~--~~~l~~----~~~~l~~~~~~a-~-i~~s~~~~~~~~~l~~~~ 241 (257)
++.+..-|..+|+||+|....-.. .+-... +....+...+.. + +.+|+.+..|.+.|+=.+
T Consensus 243 ~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i 311 (320)
T KOG2486|consen 243 WLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI 311 (320)
T ss_pred HHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence 777888899999999998754220 000111 222222222111 1 347888888887765443
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=75.02 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D 197 (257)
.+.++-+||+||-.. ++. ..+....-+|..++|+|+..+.+..... ...+.++. ..-++|+||+|
T Consensus 68 e~lq~tlvDCPGHas---LIR-----tiiggaqiiDlm~lviDv~kG~QtQtAE------cLiig~~~c~klvvvinkid 133 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHAS---LIR-----TIIGGAQIIDLMILVIDVQKGKQTQTAE------CLIIGELLCKKLVVVINKID 133 (522)
T ss_pred ccceeEEEeCCCcHH---HHH-----HHHhhhheeeeeeEEEehhcccccccch------hhhhhhhhccceEEEEeccc
Confidence 456789999999542 222 2234455689999999998766543211 12334443 34678899999
Q ss_pred CCCcCCCcchHHHHHHHHHH----h--CCCCEEE-EeecCC----cChhhh---hcCccCCCCCCCcc
Q 025133 198 LVSPERSGDSLDELEKEIHE----I--NSLAHVI-RSVRCQ----VDLSEV---LNCRAYDATVNPIK 251 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~----~--~~~a~i~-~s~~~~----~~~~~l---~~~~~~~~~~~~~~ 251 (257)
...+.++...++.....+++ . ..+++|+ +|+..+ ..+.+| +....+-+.+.|.+
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g 201 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG 201 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCC
Confidence 99886665555555444433 2 2446777 677776 444444 44445656665543
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4e-06 Score=67.70 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=91.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
-=++|.|-.++||||+|+++.-. ...+.++.++|+|-. + + ...+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd-------~fd~~YqATIGiDFl--s--------k-t~~l~----------------- 67 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYD-------KFDNTYQATIGIDFL--S--------K-TMYLE----------------- 67 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHh-------hhcccccceeeeEEE--E--------E-EEEEc-----------------
Confidence 34788999999999999999742 122334444555421 1 0 11111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC---
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD--- 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~--- 189 (257)
...+.+.+=||.|.-...-++-.. .....++|.|.|...-..-..- .++.+-+..-+-++
T Consensus 68 -----d~~vrLQlWDTAGQERFrslipsY--------~Rds~vaviVyDit~~~Sfe~t----~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 68 -----DRTVRLQLWDTAGQERFRSLIPSY--------IRDSSVAVIVYDITDRNSFENT----SKWIEDVRRERGSDDVI 130 (221)
T ss_pred -----CcEEEEEEEecccHHHHhhhhhhh--------ccCCeEEEEEEeccccchHHHH----HHHHHHHHhccCCCceE
Confidence 123456789999975544333211 1245678888887754332110 01222222222332
Q ss_pred -EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 190 -VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 190 -vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
++|-||.||.+..+. ..++-...-++++ +..+ .|++.+.++..++..+...+.++
T Consensus 131 I~LVGnKtDL~dkrqv--s~eEg~~kAkel~--a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQV--SIEEGERKAKELN--AEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEEEcccccccchhhh--hHHHHHHHHHHhC--cEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 334499999988653 3333334444444 3444 78999999999998887666554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-07 Score=73.55 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=39.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+.|+|++..++++.+.. +++|.||+|||||||++.|-.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 68999999999999999887665 799999999999999999964
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=76.43 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=32.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-C-CeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-G-KRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~-~~v~ii~~~~g~ 70 (257)
...+++|+|++|+||||++.+|... .. + .+++++..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3458999999999999999999764 22 4 899999998753
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=78.52 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh--cCEEEEeCC
Q 025133 120 RLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--~~vivlNK~ 196 (257)
.+.+-||||||-.+.. ++. +....+...++||||+++...... ...+.-++. -.+.|+||+
T Consensus 75 ~Y~lnlIDTPGHVDFsYEVS---------RSLAACEGalLvVDAsQGveAQTl-------AN~YlAle~~LeIiPViNKI 138 (603)
T COG0481 75 TYVLNLIDTPGHVDFSYEVS---------RSLAACEGALLVVDASQGVEAQTL-------ANVYLALENNLEIIPVLNKI 138 (603)
T ss_pred EEEEEEcCCCCccceEEEeh---------hhHhhCCCcEEEEECccchHHHHH-------HHHHHHHHcCcEEEEeeecc
Confidence 4556789999966542 111 233457889999999998775442 222222322 346699999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh---CCCCEEEEeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEI---NSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
|+..++ .++++..++.+ ...-.+..|+++++|+++++.++...
T Consensus 139 DLP~Ad-----pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 139 DLPAAD-----PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred cCCCCC-----HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 998875 46666666553 23333558999999999999988544
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=67.41 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.+++.|.+|+||||++|+|+. .+...++..+|.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~----~~~~~~~~~~~~ 117 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG----KKKVSVSATPGK 117 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC----CCceeeCCCCCc
Confidence 688999999999999999994 333445555554
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-06 Score=76.26 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=57.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
-+.++|.+|+|||||+|+|++... ..+.+.++..||++.+... ..+
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~---------------~~~------------------ 202 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE---------------IPL------------------ 202 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE---------------EEe------------------
Confidence 689999999999999999997532 2245666777886332110 010
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccc--cccccceeeeeEEEEEeccch
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~--~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+.++.++||||+..+..+...+..+ ..+.....+....+.+|..+.
T Consensus 203 -------~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~ 250 (360)
T TIGR03597 203 -------DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQT 250 (360)
T ss_pred -------CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCE
Confidence 1235699999998776555433210 012233456677788877653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=77.01 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc------hhhhh-cCCCCceeeeeeec-CCCcee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE------RAMIN-EGEGGALVEEWVEL-ANGCIC 100 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d------~~~~~-~~~~~~~~~~~~~l-~~gcic 100 (257)
+.=++.|+|-.|+||||-+.++.=. .++.++.|..+|+-. .|.- ...+. .+. .+ +++ ..|
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR-sGAvEQLrtHv~rl~~l~~--~~----v~lfekG--- 446 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR-SGAVEQLRTHVERLSALHG--TM----VELFEKG--- 446 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh-hhHHHHHHHHHHHHHHhcc--ch----hHHHhhh---
Confidence 3347899999999999999998532 347899999998643 2211 11111 110 00 011 000
Q ss_pred eccchhHHHHHHHHH-HhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKHSLVQALEQLV-QRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~~~~~~l~~~~-~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
+-.+.-.-+...+. .+..++|+|+|||.| ++...+++..+. .+...-+.|.+++|-.|--+....+... .+
T Consensus 447 -Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~---k~~~~~~pd~i~~vgealvg~dsv~q~~---~f 519 (587)
T KOG0781|consen 447 -YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLA---KLIKVNKPDLILFVGEALVGNDSVDQLK---KF 519 (587)
T ss_pred -cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHH---HHHhcCCCceEEEehhhhhCcHHHHHHH---HH
Confidence 01111111111111 236789999999999 666667765442 3445667899999988765544333211 01
Q ss_pred hHHHH---HHhhcCEEEEeCCCCCCc
Q 025133 179 PEAIH---QIAFADVVILNKVDLVSP 201 (257)
Q Consensus 179 ~~~~~---ql~~~~vivlNK~D~~~~ 201 (257)
-..+. +-+.-|-++++|+|.+++
T Consensus 520 n~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred HHHHhcCCCccccceEEEEeccchhh
Confidence 11221 223458999999998875
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=70.45 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
..+.+-++|+||-. .+... .+...-.+|..|+||||......... ..+-..-.-...-++.. .++++||
T Consensus 83 ~k~~~tIiDaPGHr---dFvkn-----mItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNK 154 (428)
T COG5256 83 DKYNFTIIDAPGHR---DFVKN-----MITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNK 154 (428)
T ss_pred CCceEEEeeCCchH---HHHHH-----hhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEc
Confidence 45678899999922 22211 12345578999999999976321110 00000011112223333 4667899
Q ss_pred CCCCCcCCC--cchHHHHHHHHHHh--CCC-CEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPERS--GDSLDELEKEIHEI--NSL-AHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~~--~~~l~~~~~~l~~~--~~~-a~i~-~s~~~~~~~~~l~ 238 (257)
+|.++-++- .+...++...++.. ++. .+++ +|++.|.++.+.-
T Consensus 155 MD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 155 MDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 999974431 12233333322232 332 3344 8999998886554
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.8e-07 Score=70.63 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|.+|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999999964
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-06 Score=75.58 Aligned_cols=34 Identities=41% Similarity=0.466 Sum_probs=27.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+||||++|+|. +.+.+.+.+.+|.
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~----~~~~~~~~~~~g~ 155 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLA----GKKIAKTGNRPGV 155 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHh----cCCccccCCCCCe
Confidence 468999999999999999999 4555566667775
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-06 Score=71.57 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++.+|.|+|++++|||||+|.|+.
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~ 29 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFG 29 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999999995
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >COG1341 Predicted GTPase or GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-06 Score=73.61 Aligned_cols=133 Identities=24% Similarity=0.322 Sum_probs=75.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCcee-eeeeecCCCceeec---
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALV-EEWVELANGCICCT--- 102 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~-~~~~~l~~gcicc~--- 102 (257)
...+++++.|+-+||||||...|++. .+|.+++++..|+|...-.....++.. ...... -...+...+|..-+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP 150 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISP 150 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCC
Confidence 35679999999999999999999986 458899999999985211111112110 000000 01111122222211
Q ss_pred --cchhHHHHHHHHHHh-cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 103 --VKHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 103 --~~~~~~~~l~~~~~~-~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
..........++... ....++++|||+|+.....-++. ...+....+.+.++++=++...
T Consensus 151 ~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~el---k~~li~~ikP~~Ii~l~~~~~~ 213 (398)
T COG1341 151 QGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLEL---KRALIDAIKPDLIIALERANEL 213 (398)
T ss_pred CCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHH---HHHHHhhcCCCEEEEecccccc
Confidence 223344444444432 23479999999998766333221 1233455666777777666543
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-06 Score=75.95 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|+|||||||+|+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcC
Confidence 4689999999999999999994
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.4e-06 Score=71.65 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=35.9
Q ss_pred ceeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHh-hc-CEEEEeCCCCCCcCCCcchHHHHHHHHHH
Q 025133 150 AVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA-FA-DVVILNKVDLVSPERSGDSLDELEKEIHE 217 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~-~~-~vivlNK~D~~~~~~~~~~l~~~~~~l~~ 217 (257)
.-++++++|.+-+.. .+..++ .+.+..+. .+ .+-|+-|+|.++.+++...-+.+.+.+..
T Consensus 131 D~RVH~cLYFI~Ptgh~l~~~D--------Ie~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~ 193 (373)
T COG5019 131 DTRVHACLYFIRPTGHGLKPLD--------IEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQ 193 (373)
T ss_pred cCceEEEEEEecCCCCCCCHHH--------HHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHH
Confidence 458889999998753 333333 12344443 33 45599999999988743333344444443
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=76.00 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=53.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~~ 199 (257)
.|+++||.||+.-.......+ .+....+|++|+|+.|.+-...-... +.....+ +.|.++ +.||+|..
T Consensus 206 nDivliDsPGld~~se~tswi-----d~~cldaDVfVlV~NaEntlt~sek~-----Ff~~vs~-~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWI-----DSFCLDADVFVLVVNAENTLTLSEKQ-----FFHKVSE-EKPNIFILNNKWDAS 274 (749)
T ss_pred ccceeccCCCCCCchhhhHHH-----HHHhhcCCeEEEEecCccHhHHHHHH-----HHHHhhc-cCCcEEEEechhhhh
Confidence 389999999987665544322 13346789999999999765532211 1111122 256555 55788998
Q ss_pred CcCCCcchHHHHHHHHHHhC
Q 025133 200 SPERSGDSLDELEKEIHEIN 219 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~ 219 (257)
..++ +..+.+...+..+-
T Consensus 275 ase~--ec~e~V~~Qi~eL~ 292 (749)
T KOG0448|consen 275 ASEP--ECKEDVLKQIHELS 292 (749)
T ss_pred cccH--HHHHHHHHHHHhcC
Confidence 7765 45666666655543
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=75.33 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|.+|+|||||||+|+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 689999999999999999995
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-06 Score=73.65 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.1
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|+.+.|+++..+.+.++. ++.|.||+|||||||++.|.+
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 367899999999999988877664 799999999999999999986
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=67.12 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++|.+|+||||++|.|+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 456789999999999999999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-06 Score=76.47 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC-CeEEEEecCCCcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEE 71 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~-~~v~ii~~~~g~~ 71 (257)
.+.++|.+|+|||||+|+|+....+ .+.+.++.-||+|
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT 200 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT 200 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc
Confidence 5789999999999999999964322 2445567778863
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-07 Score=76.78 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=71.2
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~~~ 200 (257)
+-|||.||-. .++. ..+....-.|..++|+.|..- .++... . -...+.-+..-+ +++-||+|+++
T Consensus 88 VSfVDaPGHe---~LMA-----TMLsGAAlMDgAlLvIaANEpcPQPQT~-E----Hl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGHE---TLMA-----TMLSGAALMDGALLVIAANEPCPQPQTR-E----HLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCchH---HHHH-----HHhcchhhhcceEEEEecCCCCCCCchH-H----HHHHHhhhccceEEEEecccceec
Confidence 4599999932 1111 122334446889999998743 222111 0 112233344444 55679999999
Q ss_pred cCCCcchHHHHHHHHHH-hCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 201 PERSGDSLDELEKEIHE-INSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~-~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
.++..+.+++++++++. +..+++|+ +|+..+.+++.|++.+..-.
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 98877778888888876 45677887 89999999999998874433
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=63.77 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|.... +. .. ....++.+++|+|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 66 v~l~iwDTaG~~~~--~~-----~~---~~~~ad~iilv~d~t~~~Sf-~~~~~--~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 66 VSLRLWDTFGDHDK--DR-----RF---AYGRSDVVLLCFSIASPNSL-RNVKT--MWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEEeCCCChhh--hh-----cc---cCCCCCEEEEEEECCChhHH-HHHHH--HHHHHHHHhCCCCCEEEEEEchhc
Confidence 45779999998532 11 01 13467899999998765432 11100 011222221 2466888999998
Q ss_pred CCcC-----------------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~-----------------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ...-..++.+++.++.+ ++.+ .|++++.|+++++...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCCHHHHHHHH
Confidence 6420 01112344445444443 4555 7999999999988654
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-06 Score=69.52 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+.++|.+|+|||||+|+|+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-06 Score=76.71 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=32.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~ 72 (257)
..-.|+++|+||+||||+||+|. |.|..-++.-||.|-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLv----G~KkVsVS~TPGkTK 350 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALV----GRKKVSVSSTPGKTK 350 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHh----cCceeeeecCCCCcc
Confidence 35679999999999999999999 677777888888633
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.7e-05 Score=59.71 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=74.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++. ...... ..+. .....+...+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~-~~~~~~--~~~~------------------~~~~~l~~~~ 60 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG-PSIPKM--WRGP------------------MKMGAIKQFL 60 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC-CCchHH--HhCc------------------chHHHHHHHH
Confidence 4567788999999999998653 568999999988764 111110 0000 0111222222
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~v 190 (257)
..+. ..++|+|+||||+........ .. .....|.+++++.+.......-. .+...+.+.+.+ ..
T Consensus 61 ~~~~--~~~yD~VIiD~pp~~~~~~~~-~~-------~~~~ad~viiV~~p~~~s~~~~~-----~~~~~l~~~~~~~~g 125 (169)
T cd02037 61 TDVD--WGELDYLVIDMPPGTGDEHLT-LA-------QSLPIDGAVIVTTPQEVALDDVR-----KAIDMFKKVNIPILG 125 (169)
T ss_pred HHhh--cCCCCEEEEeCCCCCcHHHHH-HH-------hccCCCeEEEEECCchhhHHHHH-----HHHHHHHhcCCCeEE
Confidence 2221 357999999999965432221 11 01346889999988754322110 123344454443 35
Q ss_pred EEEeCCCCC
Q 025133 191 VILNKVDLV 199 (257)
Q Consensus 191 ivlNK~D~~ 199 (257)
+|+|+.+..
T Consensus 126 vv~N~~~~~ 134 (169)
T cd02037 126 VVENMSYFV 134 (169)
T ss_pred EEEcCCccc
Confidence 789998754
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.2e-05 Score=68.13 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---------------
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--------------- 185 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--------------- 185 (257)
..+-|.||+|......+...+ ...++.+|+|+|.+.-... .... .+...+.+.
T Consensus 83 v~LqIWDTAGqErfrsL~~~y--------yr~AdgiILVyDITdr~SF-enL~---kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLF--------YSQINGVIFVHDLSQRRTK-TSLQ---KWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred EEEEEEECCCChhhhhhhHHh--------ccCCCEEEEEEeCCCHHHH-HHHH---HHHHHHHHhcccccccccccccCC
Confidence 446789999976554443322 2347899999998874432 1111 122222222
Q ss_pred hhcCEEEEeCCCCCCcCCCc----chHHHHHHHHHH
Q 025133 186 AFADVVILNKVDLVSPERSG----DSLDELEKEIHE 217 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~----~~l~~~~~~l~~ 217 (257)
..+.+||.||+|+...+... ...+..+++.++
T Consensus 151 ~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~ 186 (334)
T PLN00023 151 PVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEK 186 (334)
T ss_pred CCcEEEEEECccccccccccccccccHHHHHHHHHH
Confidence 13567888999997653210 124555565555
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-06 Score=72.40 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=27.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g 69 (257)
.-.+.++.|.+|+|||||+|+|+... ..+++-|+...|
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~ 200 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLG 200 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCC
Confidence 44589999999999999999998531 344555555543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-06 Score=71.60 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++++|+++.|++.+++.+.+.. +++++||+|||||||++.++.
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999976677777664 799999999999999999986
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-06 Score=69.17 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc--chHHHHhhhccCCChhHHHHHHh--hcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~ 196 (257)
..+-+.|.||.....+..-.. ..-.-...+.++|||+|+. .+...+.... .....+.+.. ....+.+.|+
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~---~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~---~~i~~l~~~sp~~~v~vfiHK~ 121 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNS---QREEIFSNVGVLIYVFDAQSDDYDEDLAYLS---DCIEALRQYSPNIKVFVFIHKM 121 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTC---CHHHHHCTESEEEEEEETT-STCHHHHHHHH---HHHHHHHHHSTT-EEEEEEE-C
T ss_pred cEEEEEEcCCccccccccccc---cHHHHHhccCEEEEEEEcccccHHHHHHHHH---HHHHHHHHhCCCCeEEEEEeec
Confidence 457799999976543221000 0001124578999999998 3333333221 0122222321 1235678999
Q ss_pred CCCCcCCCcchHHHHHHHHHH----hCCC-CEEEEeecCCcCh
Q 025133 197 DLVSPERSGDSLDELEKEIHE----INSL-AHVIRSVRCQVDL 234 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~----~~~~-a~i~~s~~~~~~~ 234 (257)
|+++++.+......+.+.+.. .... ...+.++-....+
T Consensus 122 D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sl 164 (232)
T PF04670_consen 122 DLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESL 164 (232)
T ss_dssp CCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHH
Confidence 999876654444444444433 2222 3455555554433
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.1e-06 Score=69.26 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCCCCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 3 DEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++.+++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|..
T Consensus 3 ~~~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 3 EPLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred cCCCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3445555679999999999887766666554 799999999999999999985
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-06 Score=72.76 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=26.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+||||++|+|.+ .+.+.+...+|.
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~----~~~~~~~~~~g~ 152 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAG----KKVAKVGNRPGV 152 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhC----CCccccCCCCCe
Confidence 4589999999999999999984 444555666664
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.7e-06 Score=74.08 Aligned_cols=102 Identities=21% Similarity=0.143 Sum_probs=59.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++|+|+||+|||||+|+|.+.. .+-+.+-|.++.... .|-+ ...+.-...|..+
T Consensus 5 ~GivGlPn~GKSTlfnaLT~~~----~~~~a~ypftTi~p~--------------------~g~v--~v~d~r~d~L~~~ 58 (368)
T TIGR00092 5 GGIVGLPNVGKSTLFAATTNLL----GNEAANPPFTTIEPN--------------------AGVV--NPSDPRLDLLAIY 58 (368)
T ss_pred EEEECCCCCChHHHHHHHhCCC----ccccCCCCCCCCCCc--------------------eeEE--EechhHHHHHHHH
Confidence 6899999999999999998532 212233233211110 0000 1122223334444
Q ss_pred HH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 115 VQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 115 ~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.. +.....+.++|.||+.......+.+. ...+.+...+|.+++|+|+.
T Consensus 59 ~~~~~~~~a~i~~~DiaGlv~gAs~g~Glg-n~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 59 IKPEKVPPTTTEFVDIAGLVGGASKGEGLG-NQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hCCcCcCCceEEEEeccccccchhcccCcc-hHHHHHHHhCCEEEEEEeCC
Confidence 43 12244789999999887654333222 23456677899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=63.45 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|-.|+|||||++.++.
T Consensus 3 IvlvGd~gVGKTSLi~~~~~ 22 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999986
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.6e-06 Score=68.13 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.2
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++++++...|+++.++.+..+. |+++.||+|+|||||++.|-+
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 45689999999999999998877554 899999999999999999854
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-06 Score=74.45 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+.-.-|||.||.-+.- . ..+....-+|..++|||+..+....... ....++.+.... ++|+||+|.
T Consensus 49 d~~~~fIDvpgh~~~i--~------~miag~~~~d~alLvV~~deGl~~qtgE-----hL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 49 DGVMGFIDVPGHPDFI--S------NLLAGLGGIDYALLVVAADEGLMAQTGE-----HLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred CCceEEeeCCCcHHHH--H------HHHhhhcCCceEEEEEeCccCcchhhHH-----HHHHHHhcCCCceEEEEecccc
Confidence 3456799999975431 1 1123445679999999997665543321 345667888887 889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.++......++.+.+. .+.++++ .|+.++.|+++|.+.+
T Consensus 116 ~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 116 VDEARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred ccHHHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHHHH
Confidence 987653333334433333 3455666 7888899999887765
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=69.13 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=34.9
Q ss_pred eeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 151 VRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 151 ~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
-++.+.+|.+-+..- +.+++- +..+.+. ...+-|+-|+|.++.+++......+.+.+.
T Consensus 128 ~RVH~cLYFI~P~ghgL~p~Di--------~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 128 NRVHCCLYFISPTGHGLKPLDI--------EFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIE 188 (366)
T ss_pred CceEEEEEEeCCCCCCCcHhhH--------HHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHH
Confidence 488899999987643 444431 2334442 345779999999998774333333333333
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=77.25 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=82.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc----ccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI----GVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~----~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
++--+.|.|...+|||||..+|+-.. +++.. .|+.- ..|..-.. ..-+ +.+...+++|....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t-----G~i~k-~G~v~~g~~~~D~~e~E-qeRG------ITI~saa~s~~~~~- 74 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT-----GIISK-IGEVHDGAATMDWMEQE-QERG------ITITSAATTLFWKG- 74 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc-----CCcCC-CccccCCCccCCCcHHH-HhcC------CEEeeeeeEEEEcC-
Confidence 45568999999999999999998431 11221 33210 11111000 0011 23334444442221
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
++.+-||||||-.+.....+ +...-+|.++.|+||..+...... ...+|.
T Consensus 75 -------------~~~iNlIDTPGHVDFt~EV~--------rslrvlDgavvVvdaveGV~~QTE--------tv~rqa~ 125 (697)
T COG0480 75 -------------DYRINLIDTPGHVDFTIEVE--------RSLRVLDGAVVVVDAVEGVEPQTE--------TVWRQAD 125 (697)
T ss_pred -------------ceEEEEeCCCCccccHHHHH--------HHHHhhcceEEEEECCCCeeecHH--------HHHHHHh
Confidence 36688999999776543322 122347999999999987665332 233443
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
+-|-++++||+|.+..+- ....+++...+.
T Consensus 126 ~~~vp~i~fiNKmDR~~a~~-~~~~~~l~~~l~ 157 (697)
T COG0480 126 KYGVPRILFVNKMDRLGADF-YLVVEQLKERLG 157 (697)
T ss_pred hcCCCeEEEEECccccccCh-hhhHHHHHHHhC
Confidence 458899999999998753 233445555444
|
|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-05 Score=67.15 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=31.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
++++.|+|+.|||||||+.+|+.. ..| +++++.+++
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 468999999999999999999875 446 899999876
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.4e-05 Score=70.15 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKV 196 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~ 196 (257)
..+..+|+.||||-. ++...+ ....-.++..|.+|||..+......- -.-....++..+++ .+||+
T Consensus 83 T~KRkFIiADTPGHe---QYTRNM-----aTGASTadlAIlLVDAR~Gvl~QTrR-----Hs~I~sLLGIrhvvvAVNKm 149 (431)
T COG2895 83 TEKRKFIIADTPGHE---QYTRNM-----ATGASTADLAILLVDARKGVLEQTRR-----HSFIASLLGIRHVVVAVNKM 149 (431)
T ss_pred cccceEEEecCCcHH---HHhhhh-----hcccccccEEEEEEecchhhHHHhHH-----HHHHHHHhCCcEEEEEEeee
Confidence 456789999999943 223222 23345689999999998776543321 11233456666544 68999
Q ss_pred CCCCcCCC--cchHHHHHHHHHHhC--CCCEEEEeecCCcCh
Q 025133 197 DLVSPERS--GDSLDELEKEIHEIN--SLAHVIRSVRCQVDL 234 (257)
Q Consensus 197 D~~~~~~~--~~~l~~~~~~l~~~~--~~a~i~~s~~~~~~~ 234 (257)
|+++-++. .+..+++..+.++++ +...|..|+..|-++
T Consensus 150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 99987652 233445555555543 334455777776655
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=60.19 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=89.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..--++++|-+|+|||+++..+..... ...+..++++|-.. ..+++.+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-------~~~~~sTiGIDFk~-----------kti~l~g~------------- 59 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-------NTSFISTIGIDFKI-----------KTIELDGK------------- 59 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-------cCCccceEEEEEEE-----------EEEEeCCe-------------
Confidence 344688999999999999999986411 11122224444211 11222221
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh---
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--- 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--- 187 (257)
...+.+.||.|......+.... ...+..+++|+|..+........ .+...+.+...
T Consensus 60 ---------~i~lQiWDtaGQerf~ti~~sY--------yrgA~gi~LvyDitne~Sfeni~----~W~~~I~e~a~~~v 118 (207)
T KOG0078|consen 60 ---------KIKLQIWDTAGQERFRTITTAY--------YRGAMGILLVYDITNEKSFENIR----NWIKNIDEHASDDV 118 (207)
T ss_pred ---------EEEEEEEEcccchhHHHHHHHH--------HhhcCeeEEEEEccchHHHHHHH----HHHHHHHhhCCCCC
Confidence 2335699999987766665432 23467889999988655432211 13344444433
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
+-++|-||+|+....+. ..++-++...++ +...+ +|++.+.++.+.+-.
T Consensus 119 ~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~--G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 119 VKILVGNKCDLEEKRQV--SKERGEALAREY--GIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred cEEEeeccccccccccc--cHHHHHHHHHHh--CCeEEEccccCCCCHHHHHHH
Confidence 33667799999885443 223333433333 45555 799999999865543
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=77.28 Aligned_cols=109 Identities=20% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
-|.+.|+||||......+.. ......|.+++|+|+.......... ....+.....|.++++||+|+.
T Consensus 525 ~p~i~fiDTPGhe~F~~lr~--------~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLRK--------RGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cCcEEEEECCCcHHHHHHHH--------hhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence 36789999999432222211 1234478999999998653332211 1223344556889999999997
Q ss_pred CcCCC--------------cchHHHHHHH-------HHHh-------------CCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERS--------------GDSLDELEKE-------IHEI-------------NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~--------------~~~l~~~~~~-------l~~~-------------~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... .+.+.++... |.+. ....+++ +|+.++.|+++|+..+
T Consensus 592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l 668 (1049)
T PRK14845 592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMV 668 (1049)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 43110 0112222211 2221 1234555 8999999999998765
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.1e-06 Score=68.83 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=39.0
Q ss_pred CcEEEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.+.| +++..+.+.+.- .++|.|++|||||||++.|..
T Consensus 1 ~~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999 666677766554 799999999999999999964
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=63.98 Aligned_cols=167 Identities=18% Similarity=0.114 Sum_probs=86.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++|.|+-|||||||+.++=... +..+|. .+. ..+-....++.|-+|-.
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~--------~~~~~~---l~~---------~ki~~tvgLnig~i~v~----------- 67 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDF--------SKAYGG---LNP---------SKITPTVGLNIGTIEVC----------- 67 (197)
T ss_pred hheeeccccCCchhHHHHHHHHH--------HhhhcC---CCH---------HHeecccceeecceeec-----------
Confidence 47899999999999999884210 000110 000 11112233444444321
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
+....|.|.-|.-....+.... -..+..+++++||.+-...........++..--.+-+.|.++.+
T Consensus 68 ------~~~l~fwdlgGQe~lrSlw~~y--------Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 68 ------NAPLSFWDLGGQESLRSLWKKY--------YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred ------cceeEEEEcCChHHHHHHHHHH--------HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 2235688888864433333211 12467899999998632211110000001111133345778889
Q ss_pred eCCCCCCcCCCcchHHHHHHHHH--HhCC--CCEE-EEeecCCcCh----hhhhcCccCCCCCCC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIH--EINS--LAHV-IRSVRCQVDL----SEVLNCRAYDATVNP 249 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~--~~~~--~a~i-~~s~~~~~~~----~~l~~~~~~~~~~~~ 249 (257)
||-|+-+..+ .+++...+. +..| ..++ .+|+..+.|+ .++..+..-+.++.|
T Consensus 134 nkqd~q~~~~----~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn~~rp~ 194 (197)
T KOG0076|consen 134 NKQDLQNAME----AAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKNVTRPP 194 (197)
T ss_pred chhhhhhhhh----HHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhccCCCc
Confidence 9999988755 455665554 3332 2223 2788887654 455555555544444
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.9e-06 Score=72.13 Aligned_cols=103 Identities=24% Similarity=0.215 Sum_probs=59.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++|+|.||+|||||.|+|.+.. +-+.|-|-.|+.-.... ..+ ++.-...|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-----a~~aNYPF~TIePN~Gi-------------v~v---------~d~rl~~L~ 55 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-----AEIANYPFCTIEPNVGV-------------VYV---------PDCRLDELA 55 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-----ccccCCCcccccCCeeE-------------Eec---------CchHHHHHH
Confidence 357899999999999999998641 22223322212111000 011 111111222
Q ss_pred HHHH---hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 113 QLVQ---RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 113 ~~~~---~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
++.. +.-...+-|||.+|+.......+.+. ++.+.+..++|.++.|||+.
T Consensus 56 ~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLG-NkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 56 EIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLG-NKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred HhcCCCCcEEeeeeEEEEecccCCCcccCCCcc-hHHHHhhhhcCeEEEEEEec
Confidence 2111 01123466899999887666555444 45567788899999999997
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-06 Score=72.99 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|.|++..++.+.+.. +++++||+|||||||++.+..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 68899999999996466656554 799999999999999999975
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=58.80 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=84.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++.|-.|+|||.|+.++... ......+.+--|+|.. .+.+.
T Consensus 9 yIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r-------------------~~~id------------------ 51 (216)
T KOG0098|consen 9 YIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGAR-------------------MVTID------------------ 51 (216)
T ss_pred EEEECCCCccHHHHHHHHhccCccccccceeeeeecee-------------------EEEEc------------------
Confidence 577899999999999999864 2111223344444420 11110
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC---E
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD---V 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~---v 190 (257)
..+..+-+-||.|.-....+.... ++ ....+++|.|..+-..-.. +..+.+-+.|...+. +
T Consensus 52 ----~k~IKlqiwDtaGqe~frsv~~sy-----Yr---~a~GalLVydit~r~sF~h----L~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 52 ----GKQIKLQIWDTAGQESFRSVTRSY-----YR---GAAGALLVYDITRRESFNH----LTSWLEDARQHSNENMVIM 115 (216)
T ss_pred ----CceEEEEEEecCCcHHHHHHHHHH-----hc---cCcceEEEEEccchhhHHH----HHHHHHHHHHhcCCCcEEE
Confidence 223456799999987655555432 22 2357788888876443211 112444556654333 3
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
++-||+|+....+.. -++-+.+-++ +...-.-.|++++.++++.+
T Consensus 116 LiGNKsDL~~rR~Vs--~EEGeaFA~e-hgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 116 LIGNKSDLEARREVS--KEEGEAFARE-HGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEcchhhhhcccccc--HHHHHHHHHH-cCceeehhhhhhhhhHHHHH
Confidence 344999999876542 2445555554 33221126888888887665
|
|
| >cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=59.26 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=56.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCce---eeeeeecCCCceeeccchhHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGAL---VEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~---~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++++|.+|+||||+...|... ..++++.++..|+.+ ..........+... .........||.|-... .+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~---~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~-~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDD---LPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENA-LLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchh---hHHHHhhccCCceEEEEecccccCCCCCEehhhH-HHHH
Confidence 689999999999999988653 458889999988843 11112211111121 22333456788886421 2233
Q ss_pred HHHHHHHhcCCCCEEEEecCCCC
Q 025133 110 ALEQLVQRKERLDHILLETTGLA 132 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~ 132 (257)
.+..+. ..+++++++||++-.
T Consensus 78 ~l~~~~--~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLV--LTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeE--ccCCCEEEEecHHHH
Confidence 333222 356789999998743
|
CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=67.61 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=42.3
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+...+++++++++++++..+++.... +.+|.|++|+|||||++.++..
T Consensus 5 ~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred CcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 46789999999999999988877554 7999999999999999999853
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-06 Score=69.46 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=38.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|++|.|+++..+++.+.- ++++.|++||||||+++.+-+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999998877665 689999999999999988864
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=68.84 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|.+|+|||||+|+|+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999999995
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.7e-06 Score=72.69 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred CCCEEEEecCCCCCc----HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeC
Q 025133 120 RLDHILLETTGLANP----APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~----~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK 195 (257)
.|+++|-|.||++.+ ..+.+.. ...+.|.+|.+.+..--..... +...+.+.+.+..+|-+|
T Consensus 85 ~pnv~lWDlPG~gt~~f~~~~Yl~~~-------~~~~yD~fiii~s~rf~~ndv~-------La~~i~~~gK~fyfVRTK 150 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNFPPEEYLKEV-------KFYRYDFFIIISSERFTENDVQ-------LAKEIQRMGKKFYFVRTK 150 (376)
T ss_dssp -TTEEEEEE--GGGSS--HHHHHHHT-------TGGG-SEEEEEESSS--HHHHH-------HHHHHHHTT-EEEEEE--
T ss_pred CCCCeEEeCCCCCCCCCCHHHHHHHc-------cccccCEEEEEeCCCCchhhHH-------HHHHHHHcCCcEEEEEec
Confidence 367999999997654 2233222 2456777776665543322222 345667788899999999
Q ss_pred CCC
Q 025133 196 VDL 198 (257)
Q Consensus 196 ~D~ 198 (257)
+|.
T Consensus 151 vD~ 153 (376)
T PF05049_consen 151 VDS 153 (376)
T ss_dssp HHH
T ss_pred ccc
Confidence 996
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.2e-06 Score=71.42 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=40.8
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 1 SNVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CCcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999887777766554 7999999999999999999863
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.9e-06 Score=65.79 Aligned_cols=45 Identities=31% Similarity=0.492 Sum_probs=37.9
Q ss_pred EEEEccccccccCcc-cCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.|+|.+.+ .+.+.++- ++.++|++|||||||++.|...
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999976 56666543 6999999999999999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.2e-05 Score=69.41 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455578999999999887777766554 799999999999999999985
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.1e-06 Score=63.66 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=81.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.+.++|.-+|||||+.|.+..-. -.-+.+.+.|+ .+..++.||+.|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~-------~~edmiptvGf---------------nmrk~tkgnvti------------ 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQ-------YLEDMIPTVGF---------------NMRKVTKGNVTI------------ 67 (186)
T ss_pred eEEEEeeccCCcceEEEEEeecc-------chhhhcccccc---------------eeEEeccCceEE------------
Confidence 46788999999999988876310 00111111111 234556666654
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH--HHH-hhcCE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQI-AFADV 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~ql-~~~~v 190 (257)
.+-|.+|.-.....-+.+. ..++.++|+|||... ..+...+.. +-..+ .|+ +.|.+
T Consensus 68 ----------klwD~gGq~rfrsmWeryc--------R~v~aivY~VDaad~-~k~~~sr~E--L~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 68 ----------KLWDLGGQPRFRSMWERYC--------RGVSAIVYVVDAADP-DKLEASRSE--LHDLLDKPSLTGIPLL 126 (186)
T ss_pred ----------EEEecCCCccHHHHHHHHh--------hcCcEEEEEeecCCc-ccchhhHHH--HHHHhcchhhcCCcEE
Confidence 5889999776655554332 247899999999862 211110000 01111 222 45777
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHH--HHhCCC--CEEEEeecCCcChhhhhcC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEI--HEINSL--AHVIRSVRCQVDLSEVLNC 240 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l--~~~~~~--a~i~~s~~~~~~~~~l~~~ 240 (257)
++-||.|+-++-. -.++...+ ..+... ....+|.+...+++.+++.
T Consensus 127 VLGnK~d~~~AL~----~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~W 176 (186)
T KOG0075|consen 127 VLGNKIDLPGALS----KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDW 176 (186)
T ss_pred EecccccCccccc----HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHH
Confidence 7889999887632 12222222 112111 2234788888888866554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1e-05 Score=71.98 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++++++|.|++..++++.+.- ++.+.||+||||||+++.|..
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999988888777554 688999999999999999985
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.3e-05 Score=61.08 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHHHhhcCEE---EEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVV---ILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~ql~~~~vi---vlNK~ 196 (257)
..+.+=||.|.-....+.-+. ...+..+|.|.|..+..+-.... .+. +.-.|.. ++++ |-||+
T Consensus 54 ikfeIWDTAGQERy~slapMY--------yRgA~AAivvYDit~~~SF~~aK----~WvkeL~~~~~-~~~vialvGNK~ 120 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMY--------YRGANAAIVVYDITDEESFEKAK----NWVKELQRQAS-PNIVIALVGNKA 120 (200)
T ss_pred EEEEEEEcCCcccccccccce--------ecCCcEEEEEEecccHHHHHHHH----HHHHHHHhhCC-CCeEEEEecchh
Confidence 346688999976543332211 12456788888988655432211 022 2223433 5544 45999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+....+. ..++...+-.+ -....+ .|++++.++++|+..+...
T Consensus 121 DL~~~R~V--~~~ea~~yAe~--~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 121 DLLERREV--EFEEAQAYAES--QGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred hhhhcccc--cHHHHHHHHHh--cCCEEEEEecccccCHHHHHHHHHHh
Confidence 99985442 24455554443 334455 7999999999988777444
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=67.39 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
+++..+-+|||||-++..-..+-. ..=+|.+++||||..+..+...+ .....-..+..-++|+||+|
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERv--------l~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERV--------LSMVDGVLLLVDASEGPMPQTRF-----VLKKALALGLKPIVVINKID 131 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhh--------hhhcceEEEEEEcccCCCCchhh-----hHHHHHHcCCCcEEEEeCCC
Confidence 456778899999977754333311 11269999999999887664432 22222334667899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC------CCCEEEEeecCC
Q 025133 198 LVSPERSGDSLDELEKEIHEIN------SLAHVIRSVRCQ 231 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~------~~a~i~~s~~~~ 231 (257)
..++.. .+.++++...+-++. .+.-++.|+..+
T Consensus 132 rp~Arp-~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G 170 (603)
T COG1217 132 RPDARP-DEVVDEVFDLFVELGATDEQLDFPIVYASARNG 170 (603)
T ss_pred CCCCCH-HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence 887543 255666666665543 222344666654
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=61.64 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=89.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcc-cccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEE-IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.--|++.|=+|+|||+|+|.+...+ ...--+.|..++-+. +.+|..
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~-------------------------------- 56 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR-------------------------------- 56 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe--------------------------------
Confidence 3457889999999999999998641 112225555555431 112211
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~ql-- 185 (257)
..-+.+=||.|......+.-.+ ....|..+.+.|...... .+++.+ .+++.|.
T Consensus 57 ----------~vtlQiWDTAGQERFqsLg~aF--------YRgaDcCvlvydv~~~~Sfe~L~~Wr-----~EFl~qa~~ 113 (210)
T KOG0394|consen 57 ----------SVTLQIWDTAGQERFQSLGVAF--------YRGADCCVLVYDVNNPKSFENLENWR-----KEFLIQASP 113 (210)
T ss_pred ----------EEEEEEEecccHHHhhhcccce--------ecCCceEEEEeecCChhhhccHHHHH-----HHHHHhcCC
Confidence 1124577999975443332111 124677777777654332 233321 2344443
Q ss_pred ----hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 ----AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ----~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+|-+|+-||+|+-....+.-.......|.+.- ...+.+ +|++...++++-+..+
T Consensus 114 ~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~-gnipyfEtSAK~~~NV~~AFe~i 173 (210)
T KOG0394|consen 114 QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK-GNIPYFETSAKEATNVDEAFEEI 173 (210)
T ss_pred CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc-CCceeEEecccccccHHHHHHHH
Confidence 256788889999977543334456666777654 355666 7888888887655544
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.8e-05 Score=68.53 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=39.7
Q ss_pred eeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCCCCcCCCcchHHHHHHHH-----HHhCCCCEEE
Q 025133 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDLVSPERSGDSLDELEKEI-----HEINSLAHVI 225 (257)
Q Consensus 153 ~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~~~~~~~~~~l~~~~~~l-----~~~~~~a~i~ 225 (257)
+|.|++++|+..+...-.. .+...+..-+.|-++ |++..|+..... .+...++.| .++.++++.|
T Consensus 134 aDLVlLlIdgnfGfEMETm-----EFLnil~~HGmPrvlgV~ThlDlfk~~s---tLr~~KKrlkhRfWtEiyqGaKlF 204 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETM-----EFLNILISHGMPRVLGVVTHLDLFKNPS---TLRSIKKRLKHRFWTEIYQGAKLF 204 (1077)
T ss_pred hheeEEEeccccCceehHH-----HHHHHHhhcCCCceEEEEeecccccChH---HHHHHHHHHhhhHHHHHcCCceEE
Confidence 5899999999765442111 123333444455554 889999987643 345444433 4467888887
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=54.80 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..|..|+||||+.-.+... ..|.++.++..|++. -
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~-~--------------------------------------- 41 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL-A--------------------------------------- 41 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC-C---------------------------------------
Confidence 3567889999999998888653 458888888888653 0
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~ 189 (257)
...+++++||+|+....... .. ...+|.+++++++....-..-.. ....+.+. ....
T Consensus 42 ------~~~yd~VIiD~p~~~~~~~~-~~---------l~~aD~vviv~~~~~~s~~~~~~-----~l~~l~~~~~~~~~ 100 (139)
T cd02038 42 ------NLDYDYIIIDTGAGISDNVL-DF---------FLAADEVIVVTTPEPTSITDAYA-----LIKKLAKQLRVLNF 100 (139)
T ss_pred ------CCCCCEEEEECCCCCCHHHH-HH---------HHhCCeEEEEcCCChhHHHHHHH-----HHHHHHHhcCCCCE
Confidence 11278999999985543321 11 23468999999998554211000 11122121 1234
Q ss_pred EEEEeCCCCC
Q 025133 190 VVILNKVDLV 199 (257)
Q Consensus 190 vivlNK~D~~ 199 (257)
.+|+|+++.-
T Consensus 101 ~lVvN~~~~~ 110 (139)
T cd02038 101 RVVVNRAESP 110 (139)
T ss_pred EEEEeCCCCH
Confidence 6899998643
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=66.49 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=39.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 m~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999887667666554 7999999999999999999863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=67.43 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=39.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+.++++.+.|++..++.+.+.- ++.|.|++|+|||||+|.+..
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 367889999999998888877665 699999999999999999975
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.8e-05 Score=66.46 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.3
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999877777766554 799999999999999999985
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=67.66 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=39.3
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+|-.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44568999999999876666666554 799999999999999999984
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.4e-05 Score=67.74 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=38.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777666554 7999999999999999999853
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00059 Score=54.60 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=69.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++. -+.+..+-.... ....+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~-~~~~~~~~~~~~-------------------~~~~~---- 57 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGL-RNLDLILGLENR-------------------VVYTL---- 57 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCchhhcccccc-------------------CCcch----
Confidence 3566778999999999999753 569999999998852 111111000000 00001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~v 190 (257)
.+++ .-|+|+|||||....... .. ....|.++.++++.......-. .+.+.+.+... ...
T Consensus 58 ~~~~----~~d~viiD~p~~~~~~~~-~~---------l~~ad~viiv~~~~~~s~~~~~-----~~~~~~~~~~~~~~~ 118 (179)
T cd02036 58 HDVL----AGDYILIDSPAGIERGFI-TA---------IAPADEALLVTTPEISSLRDAD-----RVKGLLEALGIKVVG 118 (179)
T ss_pred hhcc----cCCEEEEECCCCCcHHHH-HH---------HHhCCcEEEEeCCCcchHHHHH-----HHHHHHHHcCCceEE
Confidence 1111 118999999985543221 11 2246789999988754321110 01222233222 246
Q ss_pred EEEeCCCCCCc
Q 025133 191 VILNKVDLVSP 201 (257)
Q Consensus 191 ivlNK~D~~~~ 201 (257)
+|+|+++.-..
T Consensus 119 iv~N~~~~~~~ 129 (179)
T cd02036 119 VIVNRVRPDMV 129 (179)
T ss_pred EEEeCCccccc
Confidence 78999886543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.7e-05 Score=68.52 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 456689999999999887777766554 699999999999999999985
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=71.74 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++++|++++|+++..+.+.+.- ++++.|++|||||||++.|+..
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3469999999999988777766543 7999999999999999999863
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=55.53 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=76.9
Q ss_pred EEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++.|+.|+|||.|++.+++.. ....--.|--++|+ .+++.|
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgS------rIinVG------------------------------- 54 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGS------RIVNVG------------------------------- 54 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecc------eeeeec-------------------------------
Confidence 6789999999999999998741 11111122234443 111111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
.....+.+-||.|......+.... ++ .+-..++|.|+.+-....... .+..-.+.+..+.++|+
T Consensus 55 ----gK~vKLQIWDTAGQErFRSVtRsY-----YR---GAAGAlLVYD~TsrdsfnaLt----nWL~DaR~lAs~nIvvi 118 (214)
T KOG0086|consen 55 ----GKTVKLQIWDTAGQERFRSVTRSY-----YR---GAAGALLVYDITSRDSFNALT----NWLTDARTLASPNIVVI 118 (214)
T ss_pred ----CcEEEEEEeecccHHHHHHHHHHH-----hc---cccceEEEEeccchhhHHHHH----HHHHHHHhhCCCcEEEE
Confidence 011335688999987665555432 22 234678888887644321110 12223344445554443
Q ss_pred ---eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE--EeecCCcChhh
Q 025133 194 ---NKVDLVSPERSGDSLDELEKEIHEINSLAHVI--RSVRCQVDLSE 236 (257)
Q Consensus 194 ---NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~--~s~~~~~~~~~ 236 (257)
||.|+..+.+.. ..+... +.+.|.- ++ .|++++.++++
T Consensus 119 L~GnKkDL~~~R~Vt--flEAs~-FaqEnel--~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 119 LCGNKKDLDPEREVT--FLEASR-FAQENEL--MFLETSALTGENVEE 161 (214)
T ss_pred EeCChhhcChhhhhh--HHHHHh-hhcccce--eeeeecccccccHHH
Confidence 999998875521 111111 1122221 33 68999998864
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=68.68 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=40.2
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344578999999999877666665554 7999999999999999999853
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=62.13 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=27.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec-CC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN-EF 68 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~-~~ 68 (257)
|++.|+|+.|||||||++.|+++ .+|.+++++.+ +.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 78999999999999999999875 46889985554 44
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.8e-05 Score=63.90 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCCCCcEEEEccccccccCcccCCCcceeE-----EEEEecCCCcHHHHHHHHHccCC--CCeEEEEecCCCc
Q 025133 5 EEDPPLAVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGE 70 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----v~i~G~~gsGKSTli~~Ll~~~~--~~~v~ii~~~~g~ 70 (257)
.+..+..++++++..+++++..+.+.+-.| ++|+|++|||||||++.+..+.+ ...+.+.-.-+|.
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 344556799999999999999998886654 99999999999999999987532 3455566666665
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.7e-05 Score=67.30 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665543 7999999999999999999853
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=63.04 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=52.4
Q ss_pred ccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 148 ~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
.....+|.+++|+|++......+. .+...+.... .+.++|+||+|++++++ +..+...+++..+...+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~-----~i~~~l~~~~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~~~~~~~ 74 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCK-----HVEEYLKKEKPHKHLIFVLNKCDLVPTWV----TARWVKILSKEYPTIAFH 74 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCH-----HHHHHHHhccCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCCcEEEEE
Confidence 345678999999999875332111 0222232222 57799999999986542 334444454444433344
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
.|+..+.++++|++.+
T Consensus 75 iSa~~~~~~~~L~~~l 90 (157)
T cd01858 75 ASINNPFGKGSLIQLL 90 (157)
T ss_pred eeccccccHHHHHHHH
Confidence 7888888888777766
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=69.77 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=39.1
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++.|+ .+.++.+.+.. ++++.|++|||||||++.|+..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 577899999999 58888877654 7999999999999999999863
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.9e-05 Score=70.08 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=35.0
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
..+++++.|+|++|||||||+.+|+.. ..|.+++++.++-.
T Consensus 202 ~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 202 TGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 346889999999999999999999875 55889999997644
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=63.21 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=32.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+.|++.|+|++|||||||+++|+.. ..+.+++++.++
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 36789999999999999999999864 347789999874
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=57.86 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=75.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-----hhhhcCCCCceeeeeeecCCCceee----c
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-----AMINEGEGGALVEEWVELANGCICC----T 102 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-----~~~~~~~~~~~~~~~~~l~~gcicc----~ 102 (257)
+.+..+.-|+||||+.-.|... ..|++++++..|+.. ..... .....+...... ....+..+-+.- .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA-PNLSILFGVYDILREGLENANA-ILKNFESQDIYQGEEYL 78 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS-HHHHHHTTCHHHHTTSSHGHHC-HHESCCHHHHHHHCHCH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc-ccHHHHhcchhhccccceehhh-hhhccchhhhhhhhhhh
Confidence 4677888999999999998653 569999999998764 11110 001100000000 000000000000 0
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
....+...+..+. ...+|+||||||+..... ... .....|.+|.++++.... +.... .+...+
T Consensus 79 ~~~~l~~~l~~l~--~~~yD~iiiD~~~~~~~~-~~~---------~l~~ad~viv~~~~~~~~--i~~~~---~~~~~l 141 (195)
T PF01656_consen 79 DPELLREILESLI--KSDYDYIIIDTPPGLSDP-VRN---------ALAAADYVIVPIEPDPSS--IEGAE---RLIELL 141 (195)
T ss_dssp HHHHHHHHHHHHH--HTTSSEEEEEECSSSSHH-HHH---------HHHTSSEEEEEEESSHHH--HHHHH---HHHHHH
T ss_pred HHHHHHHHHHHhh--hccccceeecccccccHH-HHH---------HHHhCceeeeecCCcHHH--HHHHH---HHHHHH
Confidence 0011233333322 234999999999855443 111 122468899999988644 22110 123334
Q ss_pred HHHhh---cCEEEEeCCCCCCc
Q 025133 183 HQIAF---ADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~---~~vivlNK~D~~~~ 201 (257)
..+.. ...+|+||++.-+.
T Consensus 142 ~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 142 KRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp HHHTHTEEEEEEEEEEETSCCH
T ss_pred HHhccccceEEEEEeeeCCCcc
Confidence 44442 34779999976643
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.9e-05 Score=66.05 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=33.8
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.+.|... ..+++...- +++|+||+|||||||+|.+-.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999988764 345555443 799999999999999999964
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=67.92 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455689999999999876666655543 799999999999999999984
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.8e-05 Score=61.09 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++++|.+|+||||++|+|..
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-05 Score=69.44 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=39.4
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|++...+.+.+.- ++++.|++|||||||++.|+..
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999987777766554 7999999999999999999863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=67.13 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CEEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665543 7999999999999999999853
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=64.44 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=39.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.+|++++..++..+.++++. +.+|.||+|||||||++.|..+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 46789999999999988877664 8999999999999999999875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.3e-05 Score=66.75 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=38.2
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 568899999999876666666554 799999999999999999985
|
|
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.7e-05 Score=69.37 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
++++.|+|+.|||||||+.+|+.+ ..|.++++|.++-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 468999999999999999999875 5689999999753
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=65.72 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=36.5
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|+++ ..+.+.++- +++++|++|||||||++.|...
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999876 566665443 7999999999999999999853
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.2e-05 Score=67.06 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=41.5
Q ss_pred CCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++....+.+++++++|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3345578999999999887777766554 7999999999999999999853
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.2e-05 Score=65.20 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999877677666554 799999999999999999985
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.1e-05 Score=63.21 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.8
Q ss_pred cEEEEccccccccCcc----cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++|+.+.|+.+. .++++++- +++++|.+|||||||.+.|+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5789999999999988 77777665 699999999999999999984
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=66.29 Aligned_cols=40 Identities=30% Similarity=0.275 Sum_probs=31.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~ 70 (257)
.-+.+.|+|.||+|||||||++... -..++.+.+-.++|.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV 182 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV 182 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc
Confidence 4567899999999999999999763 223477888888885
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=97.75 E-value=2e-05 Score=69.29 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+++++++++|+++..+.+.+.- ++++.|++|||||||++.|+..
T Consensus 1 ~~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CEEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665443 7999999999999999999863
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0003 Score=58.78 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++++|.+|+||||+...+... ..|+++.++..|+..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 4789999999999999999653 568999999998765
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.2e-05 Score=65.97 Aligned_cols=45 Identities=31% Similarity=0.484 Sum_probs=40.4
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++|+|+.+.++++.++- +.++.|++||||||+++.++.
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg 50 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG 50 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhc
Confidence 468899999999999998877654 799999999999999999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.4e-05 Score=66.27 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++..++++++++.|++...+.+.+.- +++|+|++|||||||++.|..
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34568899999999876666665554 799999999999999999984
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=65.37 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.3
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999877776666543 7999999999999999999853
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.5e-05 Score=66.94 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999876666665543 7999999999999999999864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=64.26 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=35.5
Q ss_pred EEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+ ++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999994 45566655443 7999999999999999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.2e-05 Score=63.95 Aligned_cols=44 Identities=34% Similarity=0.493 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCcce--e---EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSV--G---VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~---vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.+++++|+|+++.++.+.+. | ++.+.||.|||||||+....+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR 49 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR 49 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH
Confidence 4678999999999998876644 3 899999999999999988754
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=56.77 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=81.6
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
+++.|=+|+|||.|+.++..- .-.....+++|+|-... ..++.
T Consensus 12 iiliGds~VGKtCL~~Rf~~~-------~f~e~~~sTIGVDf~~r-----------t~e~~------------------- 54 (205)
T KOG0084|consen 12 IILIGDSGVGKTCLLLRFKDD-------TFTESYISTIGVDFKIR-----------TVELD------------------- 54 (205)
T ss_pred EEEECCCCcChhhhhhhhccC-------CcchhhcceeeeEEEEE-----------Eeeec-------------------
Confidence 678899999999999999752 11122233344442211 11111
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVV 191 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vi 191 (257)
.....+.+=||+|.-....+.. ..+ ..++.||+|.|.+...+- .+.. .+.....+.. .+-++
T Consensus 55 ---gk~iKlQIWDTAGQERFrtit~-----syY---R~ahGii~vyDiT~~~SF-~~v~---~Wi~Ei~~~~~~~v~~lL 119 (205)
T KOG0084|consen 55 ---GKTIKLQIWDTAGQERFRTITS-----SYY---RGAHGIIFVYDITKQESF-NNVK---RWIQEIDRYASENVPKLL 119 (205)
T ss_pred ---ceEEEEEeeeccccHHHhhhhH-----hhc---cCCCeEEEEEEcccHHHh-hhHH---HHHHHhhhhccCCCCeEE
Confidence 1123355889999843332221 122 346889999999853321 1110 0111112211 25678
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|-||+|+.+..... .++.+....+ ++-..++ +|++...++++.+.+.
T Consensus 120 VGNK~Dl~~~~~v~--~~~a~~fa~~-~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 120 VGNKCDLTEKRVVS--TEEAQEFADE-LGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EeeccccHhheecC--HHHHHHHHHh-cCCcceeecccCCccCHHHHHHHH
Confidence 88999998765431 2222333332 3332244 7888888988776554
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=66.86 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 37889999999877777766554 7999999999999999999853
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.7e-05 Score=66.32 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=39.5
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34478999999999877777766554 799999999999999999985
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.4e-05 Score=65.42 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=36.4
Q ss_pred EEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+ ++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999997 65666666554 7999999999999999999853
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.6e-05 Score=64.56 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=36.2
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++ ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999765 456655443 7999999999999999999853
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.4e-05 Score=66.08 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=36.3
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876677666544 7999999999999999999863
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.1e-05 Score=65.94 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.++- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999876666665443 7999999999999999999853
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.7e-05 Score=64.94 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=35.0
Q ss_pred EEEccccccccC----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357889999876 4556655443 7999999999999999999853
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=5e-05 Score=64.93 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- +++|+|++|||||||++.|..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999876666665543 799999999999999999985
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.8e-05 Score=65.53 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999876677766544 799999999999999999985
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.4e-05 Score=66.43 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++|+|||||+|.|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999853
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.1e-05 Score=63.79 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=37.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999887777766554 7999999999999999999853
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.7e-05 Score=65.86 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|.+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345579999999999876666655443 899999999999999999985
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.2e-05 Score=65.69 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=38.6
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999887676666543 7999999999999999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.6e-05 Score=70.08 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=38.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+++++++++|++...+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999887666665443 7999999999999999999863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.8e-05 Score=65.16 Aligned_cols=46 Identities=30% Similarity=0.304 Sum_probs=38.1
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|+..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999876666666554 7999999999999999999853
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=58.02 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++|+|.-|+||||+.-.|... ..|+++.++-.||+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 789999999999999888653 569999999999874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.6e-05 Score=65.02 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999876666655443 799999999999999999974
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=65.97 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++|+++..+.+...- +++|+|++|||||||++.|..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999877766665443 799999999999999999985
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.3e-05 Score=69.75 Aligned_cols=85 Identities=27% Similarity=0.217 Sum_probs=51.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCc
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~ 201 (257)
=+-++||||-........ .....+|.++.++|+..+.....+. +....-|-+.|.++|+||+|.+--
T Consensus 198 l~nilDTPGHVnF~DE~t--------a~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRLil 264 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETT--------ASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRLIL 264 (971)
T ss_pred eeeeecCCCcccchHHHH--------HHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHHHH
Confidence 355899999666543321 1233579999999998776532221 233345567799999999997521
Q ss_pred CCC---cchHHHHHHHHHHhC
Q 025133 202 ERS---GDSLDELEKEIHEIN 219 (257)
Q Consensus 202 ~~~---~~~l~~~~~~l~~~~ 219 (257)
+-. ...+-.++-.+..+|
T Consensus 265 ELkLPP~DAY~KLrHii~~iN 285 (971)
T KOG0468|consen 265 ELKLPPMDAYYKLRHIIDEIN 285 (971)
T ss_pred HhcCChHHHHHHHHHHHHHhc
Confidence 100 012445555566666
|
|
| >PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.7e-05 Score=71.36 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=34.8
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
...++|++.|+|++|||||||+.+|+.+ ..|.++++|.++
T Consensus 6 ~~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 6 NPLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 3456899999999999999999999875 558899999984
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.4e-05 Score=65.22 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999877666665543 7999999999999999999853
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.1e-05 Score=65.03 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=35.6
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999877666665543 799999999999999999985
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.69 E-value=3e-05 Score=64.85 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=34.9
Q ss_pred EEEccccccccC----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999976 4555555443 7999999999999999999853
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.3e-05 Score=66.53 Aligned_cols=45 Identities=31% Similarity=0.453 Sum_probs=37.8
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.++|+ ++..+.+.++- +++|.|++|||||||++.|...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 689999999996 45566666554 7999999999999999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.5e-05 Score=65.11 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 68899999999876677666554 7999999999999999999853
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00086 Score=49.50 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=51.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.++.+..|+||||+...|... .. |+++.++..|+..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----------------------------------------- 41 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----------------------------------------- 41 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------------------------------------
Confidence 355778999999999998653 34 8888888877763
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
..|+|+||||+........ . ...+|.++.++++....
T Consensus 42 --------~~D~IIiDtpp~~~~~~~~-~---------l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 42 --------GDDYVVVDLGRSLDEVSLA-A---------LDQADRVFLVTQQDLPS 78 (106)
T ss_pred --------CCCEEEEeCCCCcCHHHHH-H---------HHHcCeEEEEecCChHH
Confidence 1279999999976543221 1 12458899999887554
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.1e-05 Score=64.70 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=35.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899998876666655443 7999999999999999999853
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.7e-05 Score=64.88 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.+.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999876666666554 7999999999999999999853
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.2e-05 Score=65.58 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=38.5
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999876666665443 799999999999999999985
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.8e-05 Score=63.47 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999877666666543 7999999999999999999863
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.2e-05 Score=65.37 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999876666555443 7999999999999999999853
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.7e-05 Score=65.56 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++-.+++++++++|+++..+.+...- +++|+|++|||||||++.|..
T Consensus 12 ~~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred CCCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 346678999999999887766665544 799999999999999999985
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.9e-05 Score=67.05 Aligned_cols=103 Identities=21% Similarity=0.152 Sum_probs=58.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCC---CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKH---GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~---~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+-+-++|+|.||+|||||+|+|.+..- +...+.|...-+. +. | .++-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~-V~------------------------v-----~d~R 68 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEAR-VE------------------------V-----PDSR 68 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccce-ee------------------------c-----CchH
Confidence 345789999999999999999986411 2222222222221 10 0 1111
Q ss_pred HHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 108 VQALEQLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 108 ~~~l~~~~~~--~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
.+.|-..... .-...+-+.|..|+.......+.+. +..+.+...+|.++.||++..
T Consensus 69 fd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG-N~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 69 FDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG-NKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch-HHHHHhhhhccceeEEEEecC
Confidence 1222222211 1234567899999876655444333 344566778899999988763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.3e-05 Score=65.24 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45579999999999876666666554 7999999999999999999853
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.8e-05 Score=63.80 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=36.0
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999877766665543 7999999999999999999853
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.7e-05 Score=65.06 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999877777666543 799999999999999999984
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.4e-05 Score=63.65 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=35.8
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++.++|+++ ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999875 556655443 7999999999999999999853
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.6e-05 Score=66.65 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=37.6
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999887777766543 7999999999999999999863
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=57.04 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++|+|.-|+||||+.-.|... ..|+++.++-.|++.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5778899999999998888653 569999999999863
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.1e-05 Score=63.30 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=34.8
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+. .|++...+++....+++|.||.||||||+++.+.
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 5567776 7777777777777999999999999999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.8e-05 Score=64.66 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999876666665443 7999999999999999999853
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.6e-05 Score=63.73 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=35.7
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999776666666554 799999999999999999985
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.4e-05 Score=65.43 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.+.|+++..+.+.+.- +++|.|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999863
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.3e-05 Score=64.08 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=35.1
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.++- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578889988776666555443 7999999999999999999853
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.4e-05 Score=63.74 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=33.6
Q ss_pred EEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|++ +..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788888876 5666655443 799999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.7e-05 Score=64.52 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999863
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=5e-05 Score=64.75 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999876666655443 7999999999999999999853
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.2e-05 Score=63.50 Aligned_cols=44 Identities=32% Similarity=0.404 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876666665544 7999999999999999999853
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=97.65 E-value=5e-05 Score=64.86 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999864
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=55.29 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++.|+|.-|+||||+.-.|... ..|+++.++-.|++.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4788899999999988888653 568999999998773
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.5e-05 Score=64.64 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|+|||||++.|...
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999876666666554 7999999999999999999853
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=97.65 E-value=4e-05 Score=64.84 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=35.6
Q ss_pred EEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999976 5666665543 7999999999999999999853
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.1e-05 Score=63.77 Aligned_cols=44 Identities=25% Similarity=0.506 Sum_probs=34.9
Q ss_pred EEEccccccccCc--ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++. ..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999652 355554432 7999999999999999999853
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.4e-05 Score=63.70 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=35.2
Q ss_pred EEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889998876 5566665443 7999999999999999999853
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.4e-05 Score=64.93 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=38.6
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3468899999999876666666544 799999999999999999985
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.7e-05 Score=64.92 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=37.3
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 468899999999876666655443 799999999999999999973
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.8e-05 Score=62.11 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=34.3
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578888888776666555443 799999999999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.6e-05 Score=64.56 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=36.8
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|+..
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999876666665544 7999999999999999999853
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.8e-05 Score=65.05 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=35.2
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999876666655443 799999999999999999985
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00078 Score=55.15 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=59.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
-+++++|++|+||||++..++.+ ..++++.++...+.+..+ ...+.+. .+... .+.......++...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~--lg~~~--------~~~~~~~~~~~~~~ 71 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSR--IGLSR--------EAIPVSSDTDIFEL 71 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecC--CCCcc--------cceEeCChHHHHHH
Confidence 37899999999999999888764 457788877542221111 1111111 01101 11112223344444
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
+.+ ...++++|+||-.++....++.+.+. .+ ......++++-.|..
T Consensus 72 ~~~---~~~~~dvviIDEaq~l~~~~v~~l~~---~l-~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 72 IEE---EGEKIDCVLIDEAQFLDKEQVVQLAE---VL-DDLGIPVICYGLDTD 117 (190)
T ss_pred HHh---hCCCCCEEEEEccccCCHHHHHHHHH---HH-HHcCCeEEEEecCcc
Confidence 443 24578999999998765544443221 11 123345566655543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.9e-05 Score=64.33 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 58899999999877666655443 799999999999999999985
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.1e-05 Score=65.34 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++++|++|+|||||+|.|+... ....+-++...+.....+......
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~-------------------------------- 209 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELF-------------------------------- 209 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEE--------------------------------
Q ss_pred HHHhcCCCCEEEEecCCCCCc
Q 025133 114 LVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~ 134 (257)
.-.....++||||+.+.
T Consensus 210 ----~~~~~~~liDtPG~~~~ 226 (287)
T cd01854 210 ----PLPGGGLLIDTPGFREF 226 (287)
T ss_pred ----EcCCCCEEEECCCCCcc
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-05 Score=65.42 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+.+++++++++.|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45578999999999887667666543 7999999999999999999853
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=53.70 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=60.8
Q ss_pred EEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++.|.+ .-|+||||+.-.|... ..|+++.++..|+..... . -......+. . .+. +......+...
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~-~--~~~~~~~~~---~--~i~----~~~~~~~~~~~ 69 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-D--WAEAREEGE---P--LIP----VVRMGKSIRAD 69 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChH-H--HHHhcccCC---C--CCc----hhhccHHHHHH
Confidence 455554 4669999999988653 568999999999874211 1 000000000 0 000 00112334444
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+..+ ...+|+|||||||...+.. .. .....|.++.+++++..
T Consensus 70 l~~~---~~~~d~viiD~p~~~~~~~-~~---------~l~~aD~viip~~ps~~ 111 (211)
T PHA02518 70 LPKV---ASGYDYVVVDGAPQDSELA-RA---------ALRIADMVLIPVQPSPF 111 (211)
T ss_pred HHHH---hccCCEEEEeCCCCccHHH-HH---------HHHHCCEEEEEeCCChh
Confidence 4443 3578999999999654321 11 12346889999998854
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.5e-05 Score=65.95 Aligned_cols=46 Identities=28% Similarity=0.430 Sum_probs=37.3
Q ss_pred cEEEEccccccccCc-----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++.++|.+. ..+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999642 366665543 7999999999999999999863
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.7e-05 Score=64.49 Aligned_cols=44 Identities=36% Similarity=0.538 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 47889999999876667666554 799999999999999999985
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.4e-05 Score=64.20 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876666665543 7999999999999999999853
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=58.17 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=42.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHH--ccCCCCeEEEEecCC
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL--NGKHGKRIAVILNEF 68 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll--~~~~~~~v~ii~~~~ 68 (257)
|.+.++++.+.|+.+-.+.+.... .+++.||+|+|||||++.|- +-.......|..+++
T Consensus 1 msirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f 66 (242)
T COG4161 1 MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred CceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence 578999999999998777655432 68999999999999999873 222233444444443
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.2e-05 Score=63.44 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=33.5
Q ss_pred EccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++.|++ +..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5678888876 5566655443 7999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.4e-05 Score=64.13 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=39.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468899999999877777766544 7999999999999999999853
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.4e-05 Score=64.40 Aligned_cols=43 Identities=35% Similarity=0.390 Sum_probs=35.2
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++.+.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 578899998876666665544 7999999999999999999853
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.5e-05 Score=60.85 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=35.3
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.|++...+.+...- ++++.|++|+|||||++.|...
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999876666655443 7999999999999999999853
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=7e-05 Score=62.89 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++. ..+.+.++- +++|+|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999763 355555443 8999999999999999999853
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.8e-05 Score=64.78 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999887777666544 7999999999999999999863
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.8e-05 Score=64.36 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=36.9
Q ss_pred cEEEEccccccccCc--ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999763 255554433 7999999999999999999863
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.5e-05 Score=65.98 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=37.4
Q ss_pred cEEEEccccccccC-----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+.++++++.|++ +..+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CEEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999974 2456666554 7999999999999999999863
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.9e-05 Score=63.85 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.. +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999877777766554 799999999999999999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.4e-05 Score=63.36 Aligned_cols=44 Identities=27% Similarity=0.478 Sum_probs=35.4
Q ss_pred EEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999998 555556555443 7999999999999999999853
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.5e-05 Score=62.72 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578888888877766665543 7999999999999999999863
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.8e-05 Score=64.79 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=39.7
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++.++++.++|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999988877776554 7999999999999999999853
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=6e-05 Score=63.72 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 58899999999876666666554 799999999999999999985
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=6e-05 Score=64.25 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=36.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999876666655443 799999999999999999984
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.1e-05 Score=68.75 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=38.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|++...+.+.+.- ++++.|++|||||||++.|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 368899999999886666554433 7999999999999999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.5e-05 Score=65.20 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.6
Q ss_pred cEEEEccccccccCc-----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999752 355555443 7999999999999999999863
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=8e-05 Score=65.54 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=40.0
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++.++++.+.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999887777665554 799999999999999999985
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.9e-05 Score=63.93 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=37.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999876666665443 799999999999999999985
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.4e-05 Score=64.31 Aligned_cols=45 Identities=33% Similarity=0.444 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999877666665544 6999999999999999999863
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.8e-05 Score=68.29 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.+.. ++++.|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 68899999999887666655443 7999999999999999999863
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.4e-05 Score=63.46 Aligned_cols=41 Identities=37% Similarity=0.480 Sum_probs=33.4
Q ss_pred EccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 14 IDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 57888888776666655443 799999999999999999985
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.5e-05 Score=64.32 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36889999999877666665544 7999999999999999999853
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.2e-05 Score=64.84 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.-++.++++.+.|+++..+.+.+.- +++|.|++|||||||++.|...
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56688999999999887777766554 7999999999999999999864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.1e-05 Score=63.69 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=36.9
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|..++++++++.| ++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3478999999999 44566655543 799999999999999999985
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=53.84 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=30.0
Q ss_pred eeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
.+++.|+ +..|+||||+...|... ..|+++.++..|+..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5566666 55799999999998763 568899999888643
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.58 E-value=4.8e-05 Score=59.45 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=33.6
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|++...+.+.++- +++|+|++|+|||||++.|..
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 577888888775555554443 799999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.4e-05 Score=62.01 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|...
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999877666665443 7999999999999999999853
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 257 | ||||
| 1nij_A | 318 | Yjia Protein Length = 318 | 2e-22 | ||
| 4ixn_A | 318 | Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Tr | 1e-20 |
| >pdb|1NIJ|A Chain A, Yjia Protein Length = 318 | Back alignment and structure |
|
| >pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple Mutant Yjia Gtpase Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 275 bits (707), Expect = 4e-93
Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 22/216 (10%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFGE + V+ +I + +
Sbjct: 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKT 59
Query: 94 LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 149
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 60 LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119
Query: 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLD 209
LD +I +VDA + ++ + A Q+ +AD ++L K D+ +
Sbjct: 120 RYLLDGVIALVDAVHAD------EQMNQFTIAQSQVGYADRILLTKTDVAGE------AE 167
Query: 210 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
+L + + IN+ A V +DL + N +
Sbjct: 168 KLHERLARINARAPVYTVTHGDIDLGLLFNTNGFML 203
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-10
Identities = 48/284 (16%), Positives = 86/284 (30%), Gaps = 99/284 (34%)
Query: 3 DEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIA 62
D + V + + + + V +I G LG+GK+ + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA-----------LD 169
Query: 63 VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR----- 117
V L+ V+ M + W+ L N C ++++ L++L+ +
Sbjct: 170 VCLSY-----KVQCKM----DFKIF---WLNLKN----CNSPETVLEMLQKLLYQIDPNW 213
Query: 118 KERLDHI----------------LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVD 161
R DH LL++ N +L L + V+ +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLN-----VQNAKAWNAFN 263
Query: 162 --AKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219
K LL K D + +S + +L E +
Sbjct: 264 LSCKILLTTRFK--------------QVTDFLSAATTTHISLDHHSMTLTPDEVK----- 304
Query: 220 SLAHVIRSVRCQVDLSEVLNCRAYD-----ATVNP--IKLCSES 256
SL L + L+CR D T NP + + +ES
Sbjct: 305 SL------------LLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 9e-08
Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILN-GKHGKRIAVILNEFGEEIGVERAMIN 80
S+ H + ++ + V G G+GK+TL + ++A + + G + I+
Sbjct: 4 SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSID 63
Query: 81 EGEGGAL---VEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
E + + E + + + L ++++ ++ D++L++T G
Sbjct: 64 VREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 123
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVI 192
+L + ++ + D + A+ ++ +
Sbjct: 124 LFHEFGV---RLMENLPYPLVVYISDP---EILKKPNDYCFVRFFALLIDLRLGATTIPA 177
Query: 193 LNKVDLVSPERSGDSLD 209
LNKVDL+S E
Sbjct: 178 LNKVDLLSEEEKERHRK 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.94 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.75 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.75 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.74 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.71 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.71 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.7 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.69 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.67 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.65 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.63 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.62 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.61 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.58 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.57 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.54 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.5 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.5 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.48 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.48 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.46 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.46 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.46 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.45 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.44 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.43 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.43 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.42 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.41 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.4 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.4 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.4 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.4 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.39 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.38 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 99.37 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.37 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.36 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.35 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.34 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.34 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.34 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.33 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.33 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.33 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.32 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.32 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.32 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.31 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.31 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.31 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.31 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.31 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.31 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.31 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.3 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.29 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.29 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.29 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.28 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.28 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.28 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.28 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.28 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.28 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.27 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.27 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.27 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.27 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.27 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.27 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.27 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.27 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.26 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.26 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.26 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.26 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.26 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.26 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.26 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.26 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.26 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.26 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.26 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.25 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.25 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.25 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.25 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.25 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.25 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.25 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.25 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.24 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.24 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.24 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.24 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.24 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.23 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.23 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.23 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.23 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.23 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.22 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.21 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.21 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.21 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.21 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.21 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.21 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.21 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.21 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.21 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.2 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.2 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.2 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.2 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.2 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.2 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.19 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.19 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.19 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.19 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.19 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.19 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.18 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.18 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.18 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.18 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.18 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.17 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.16 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.16 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.16 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.16 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.16 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.16 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.16 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.16 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.15 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.15 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.15 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.14 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.14 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.14 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.14 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.14 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.14 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.13 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.13 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.13 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.12 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.11 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.11 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.11 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.11 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 99.1 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.1 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.09 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.09 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.08 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.08 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.08 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.08 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.07 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.06 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.05 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.05 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.63 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 99.05 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.03 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.03 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.03 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.01 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.01 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.01 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.01 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.0 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.0 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.0 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 98.97 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 98.95 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.95 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.95 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.95 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 98.95 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 98.94 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.93 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 98.93 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 98.92 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 98.92 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 98.9 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 98.89 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 98.88 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 98.87 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.86 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 98.78 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.77 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.76 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.72 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 98.71 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.66 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.66 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.66 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.65 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.65 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 98.64 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.63 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.63 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.59 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.55 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.54 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.54 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.53 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 98.43 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.43 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.4 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.35 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.29 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.27 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 98.26 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.21 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.18 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.18 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.15 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.14 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 98.11 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 98.09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 98.05 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 98.04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 98.01 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.01 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.01 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.99 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 97.99 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.99 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.98 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.98 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.94 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.93 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.92 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 97.92 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.91 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 97.9 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.9 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.9 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.89 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.86 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.84 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.84 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.84 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 97.84 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.83 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.82 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.81 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 97.81 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.8 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.79 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.79 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.78 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 97.76 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.75 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.75 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 97.74 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.72 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.72 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.7 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 97.7 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.7 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.7 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 97.66 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.65 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.65 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.64 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 97.63 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.59 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.57 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.54 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.52 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 97.48 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 97.48 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 97.47 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.45 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 97.39 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.33 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 97.33 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.33 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.28 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.15 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.13 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.13 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.13 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.11 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.09 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.08 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 97.07 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.06 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.05 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 97.05 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 97.03 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.02 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.01 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.01 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.01 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.0 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.0 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.99 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.98 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.97 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.96 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.95 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.95 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.94 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.93 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.92 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.92 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.9 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.9 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.9 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.89 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.87 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.86 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.85 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.84 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.84 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.84 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.83 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.82 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.81 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.78 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.78 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 96.75 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.73 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.73 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.72 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.72 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.7 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.7 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.7 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.69 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.68 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.68 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.65 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.64 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.63 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.62 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.62 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.62 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.62 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.61 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.61 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.59 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.59 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.57 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.57 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.57 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.57 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.55 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.55 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.55 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.55 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.54 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.54 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.54 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.53 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.52 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.51 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.51 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.49 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.49 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.49 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.49 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.48 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.48 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.48 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.47 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.47 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.46 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.45 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.45 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 96.44 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.44 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.42 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.42 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.42 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.41 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.4 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.38 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.38 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.38 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.37 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.36 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.36 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 96.36 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.35 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.35 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.34 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.34 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 96.34 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.34 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.34 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.33 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.33 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.32 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.31 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.3 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.28 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.28 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.26 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 96.26 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.25 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.25 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.25 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.24 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.24 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.24 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.23 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.2 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.2 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.2 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.2 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.19 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.18 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.17 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.16 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.16 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.13 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.11 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.09 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.09 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.08 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.07 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.06 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.06 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.05 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.04 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 96.04 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.02 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.01 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.01 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.97 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.97 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.96 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.95 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.95 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.94 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.93 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.91 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.91 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 95.88 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.86 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.85 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.85 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.85 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.82 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.8 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 95.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.77 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.77 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.76 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.75 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.75 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.74 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.74 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.73 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.71 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.71 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.7 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 95.69 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.65 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 95.65 | |
| 4ehx_A | 315 | Tetraacyldisaccharide 4'-kinase; membrane protein, | 95.64 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 95.63 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 95.63 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.61 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.57 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.56 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.56 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.49 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 95.48 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.47 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.46 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.42 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.41 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 95.4 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.39 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.36 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.34 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.33 |
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=195.75 Aligned_cols=199 Identities=35% Similarity=0.617 Sum_probs=158.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.++|+++|+||+|||||||+|.|+...++++++++.+++|. +.+|...+... .....++.+||+||+.+.++..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~-----~~~~~el~~gCicc~~~~~~~~ 75 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDR-----ATQIKTLTNGCICCSRSNELED 75 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTT-----SCEEEEETTSCEEECTTSCHHH
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCC-----CCCEEEECCCceEEcccHHHHH
Confidence 36899999999999999999999987778999999999998 88887666431 1256788999999999999999
Q ss_pred HHHHHH--HhcC--CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLV--QRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~--~~~~--~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
.+..++ .+.. .++++++|+.|+.+|..+...+...........++.++.++|+..+...... +.....|+
T Consensus 76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~------ls~g~~Q~ 149 (318)
T 1nij_A 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV 149 (318)
T ss_dssp HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHH
T ss_pred HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhh------chHHHHHH
Confidence 888875 1233 3599999999999988765443112233445678899999999987765442 24456889
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
..++++++||.|++++. +.+.+.++.+++.+.++.++.+..+++.+++...+..+
T Consensus 150 ~~ad~ill~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~ 204 (318)
T 1nij_A 150 GYADRILLTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLE 204 (318)
T ss_dssp HTCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCC
T ss_pred HhCCEEEEECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChh
Confidence 99999999999999542 66777888889999999999999999999988766543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=150.78 Aligned_cols=187 Identities=20% Similarity=0.181 Sum_probs=118.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhh------hc--CCCCceeeeeeecCCCce
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMI------NE--GEGGALVEEWVELANGCI 99 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~------~~--~~~~~~~~~~~~l~~gci 99 (257)
.+.++++|+|++|+|||||+++|... ..|++++++..|++... .....+ .. ...+. ......++|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~-~~g~~l~d~~~~~~~~~~~~~---~i~~~~~~~~ 152 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR-TGGSILGDKTRMARLAVHPNA---YIRPSPTSGT 152 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTTE---EEECCC--CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc-ccchhccchhhHHhhccCCCe---eEEECCCCcc
Confidence 35679999999999999999999764 56899999999988632 111111 00 01112 3345677888
Q ss_pred eeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 100 cc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
||.........+. .+. ..+++++||||||+....... ...+|.+++|+|+...... .. +.
T Consensus 153 ~~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~-----------~~~aD~vl~V~d~~~~~~~-~~------l~ 212 (355)
T 3p32_A 153 LGGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAV-----------ANMVDTFVLLTLARTGDQL-QG------IK 212 (355)
T ss_dssp HHHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHH-----------HTTCSEEEEEEESSTTCTT-TT------CC
T ss_pred ccchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHH-----------HHhCCEEEEEECCCCCccH-HH------HH
Confidence 8776666666663 332 567999999999987654322 1347899999998754322 11 00
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCcc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
....+.|+++|+||+|+.+........+.+...+...++ ..+++ +|++++.|++++++.+.
T Consensus 213 --~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 213 --KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVE 279 (355)
T ss_dssp --TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHH
T ss_pred --HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHH
Confidence 012456999999999998654322233455555544432 34555 89999999999987763
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=139.25 Aligned_cols=179 Identities=17% Similarity=0.274 Sum_probs=122.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.++++++|++|+|||||+++|+.. ....+++++.++++. ..|...+... +. ....+..||+||.....+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 100 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRF--GI---KAEAISTGKECHLDAHMIY 100 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTT--TC---EEEECCCTTCSSCCHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhC--CC---cEEEecCCceeecccHHHH
Confidence 46789999999999999999999864 334689999999985 3444433321 11 3456778888875544444
Q ss_pred HHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+. ...+++++++||+|. ..|..+ . ...+.+++|+|+..+..... ....+...
T Consensus 101 ~~~~----~~~~~d~iiidt~G~~~~~~~~------~------~~~~~~i~vvd~~~~~~~~~---------~~~~~~~~ 155 (221)
T 2wsm_A 101 HRLK----KFSDCDLLLIENVGNLICPVDF------D------LGENYRVVMVSVTEGDDVVE---------KHPEIFRV 155 (221)
T ss_dssp TTGG----GGTTCSEEEEEEEEBSSGGGGC------C------CSCSEEEEEEEGGGCTTHHH---------HCHHHHHT
T ss_pred HHHH----hcCCCCEEEEeCCCCCCCCchh------c------cccCcEEEEEeCCCcchhhh---------hhhhhhhc
Confidence 3333 245789999999995 333211 0 12356899999987532211 12245678
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+..+ ...+.+...++..++.++++ +|++++.++++++..+.
T Consensus 156 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 156 ADLIVINKVALAEAVG--ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred CCEEEEecccCCcchh--hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 9999999999975421 12577777788888877877 78999999999887663
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=148.26 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc------CCCCceeeeeeecCCCceee
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE------GEGGALVEEWVELANGCICC 101 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~------~~~~~~~~~~~~l~~gcicc 101 (257)
...++++|+|+||||||||+|+|+.. ..+.+++++..++++ ...++.++.. -... ........+.+|.||
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~-~~~~v~~~~~~~~lg 149 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRD-MNAYIRPSPTRGTLG 149 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTC-TTEEEECC-------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCC-CCEEEEecCCccccc
Confidence 45789999999999999999999864 346899999999986 3332222211 0000 001223456688887
Q ss_pred ccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.+..+....+..+ ...+++++|+||||+..+.... ...+|.+++|+|+...... .. +.
T Consensus 150 g~tr~~~~~~~~~--~~~~~~~iliDT~Gi~~~~~~l-----------~~~~d~vl~V~d~~~~~~~-~~------i~-- 207 (349)
T 2www_A 150 GVTRTTNEAILLC--EGAGYDIILIETVGVGQSEFAV-----------ADMVDMFVLLLPPAGGDEL-QG------IK-- 207 (349)
T ss_dssp --CTTHHHHHHHH--HHTTCSEEEEECCCC--CHHHH-----------HTTCSEEEEEECCC------------------
T ss_pred cchHHHHHHHHhh--ccCCCCEEEEECCCcchhhhhH-----------HhhCCEEEEEEcCCcchhH-HH------hH--
Confidence 5444454444322 1467899999999987553221 1246899999999864321 10 00
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...++.++++|+||+|+.+..........+...++..++ ..+++ +|+.++.|+++|++.+
T Consensus 208 ~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I 273 (349)
T 2www_A 208 RGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKM 273 (349)
T ss_dssp ---CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHH
Confidence 012456899999999997542211123334443433333 34555 7999999999988766
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-18 Score=148.70 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=104.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+.++++|.+|+|||||+|+|+ +.++++++..++++..... ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~-------------~~~~---------------- 54 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVL-------------GVKN---------------- 54 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEE-------------EEEE----------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEE-------------EEEe----------------
Confidence 456689999999999999999999 5566666777765221100 0000
Q ss_pred HHHHHHHhcC-CCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 110 ALEQLVQRKE-RLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 110 ~l~~~~~~~~-~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.. +.+++|+||||+.++. ......+..........+|.+++|+|+.......+... +...+.+..
T Consensus 55 --------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~----~~~~l~~~~ 122 (308)
T 3iev_A 55 --------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI----YQNFIKPLN 122 (308)
T ss_dssp --------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHH----HHHHTGGGC
T ss_pred --------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHH----HHHHHHhcC
Confidence 22 5678999999987754 21111111112223456899999999986533222110 122333345
Q ss_pred hcCEEEEeCCCCC-CcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 187 FADVVILNKVDLV-SPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 187 ~~~vivlNK~D~~-~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
.|.++|+||+|+. +.+. +......+.+.. +..+++ +|++++.|+++++..+...+
T Consensus 123 ~pvilV~NK~Dl~~~~~~----~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKN----VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CCEEEEEECGGGSSSGGG----GHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCEEEEEECccCCCCHHH----HHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6889999999998 4433 344444454444 556666 79999999999888764433
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-18 Score=146.48 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=102.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+.++++|.+|+|||||+|+|+ +.++++++..++++.. .+ .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr~----~i---------~~i~~---------------- 51 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRK----RL---------RGILT---------------- 51 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCS----CE---------EEEEE----------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCceeE----EE---------EEEEE----------------
Confidence 566789999999999999999999 5555566666664211 00 00000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hh
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF 187 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~ 187 (257)
..+.+++|+||||+.++.......+..........+|.+++|+|+.......+.. +...+.+. ..
T Consensus 52 --------~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~-----i~~~l~~~~~~~ 118 (301)
T 1wf3_A 52 --------EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV 118 (301)
T ss_dssp --------ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred --------eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHH-----HHHHHHhhcCCC
Confidence 2346789999999987644332221122223345789999999998643322211 12233333 56
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|.++|+||+|+.+..+ .+...++.+.+..+++ +|+.++.+++++++.+...
T Consensus 119 p~ilV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 119 PILLVGNKLDAAKYPE------EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp CEEEEEECGGGCSSHH------HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CEEEEEECcccCCchH------HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 7899999999986532 0233344445556666 7888888998888776443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-17 Score=143.23 Aligned_cols=188 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh-
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS- 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~- 106 (257)
.+.++++++|++|+|||||++.|+.. ..+.+++++..++++ ...+...+... ...+......++|+||.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~-~~~~~~il~d~---~~~~~~~~~~~~~i~~~~~~~~ 129 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS-PVTGGSILGDK---TRMNDLARAEAAFIRPVPSSGH 129 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------CTTTTCTTEEEEEECC---
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc-CCCCcceeccc---chHHhhccCCCceeecCccccc
Confidence 45678999999999999999999753 347899999999986 22222222110 001111223577888754221
Q ss_pred ----HHHHHHHHHH-hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 107 ----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 107 ----~~~~l~~~~~-~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
....+..+.. ...+++++||||||+.++..... ..+|.+++|+|+..... .. . +..
T Consensus 130 l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~-----------~~aD~vl~Vvd~~~~~~-~~----~--l~~- 190 (341)
T 2p67_A 130 LGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVA-----------RMVDCFISLQIAGGGDD-LQ----G--IKK- 190 (341)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHH-----------TTCSEEEEEECC-------C----C--CCH-
T ss_pred cchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHH-----------HhCCEEEEEEeCCccHH-HH----H--HHH-
Confidence 1112222211 14578999999999987654321 34789999999975432 11 1 111
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.+.|.++|+||+|+.+.......++.+...++..++ ..+++ +|++++.|++++++.+
T Consensus 191 -~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l 255 (341)
T 2p67_A 191 -GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI 255 (341)
T ss_dssp -HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred -hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence 33567999999999998653221222344444444443 34555 7899999999988766
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=137.09 Aligned_cols=174 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
......+.+.++++|.+|+|||||+|+|+... .++.+...+|.+.... ...+.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~---------------~~~~~--------- 74 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHIN---------------YFSVG--------- 74 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEE---------------EEEES---------
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceE---------------EEEec---------
Confidence 34455567889999999999999999998531 1222333333211100 00000
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
...+..+.|+||||+..+ ......+ ....+.....++.+++|+|+.......+.. +
T Consensus 75 ------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~ 136 (223)
T 4dhe_A 75 ------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL-LSSYLQTRPQLCGMILMMDARRPLTELDRR-----M 136 (223)
T ss_dssp ------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----H
T ss_pred ------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHH-HHHHHhcCcCcCEEEEEEeCCCCCCHHHHH-----H
Confidence 022467899999997654 1111111 112233344578899999998643322211 2
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-----CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI-----NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-----~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
...+.+...+.++|+||+|+.+..+.....+.+.+.+... ....+++ +|++++.|+++++..+..
T Consensus 137 ~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 137 IEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp HHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 2333444568899999999998654333455555666654 3555666 899999999999887743
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=137.81 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=103.8
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.+.++|+|.+|+|||||+|+|+ +.++++++..++++. .... ....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr----~~~~---------gi~~--------------- 52 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTR----HRIV---------GIHT--------------- 52 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCS----SCEE---------EEEE---------------
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcce----eeEE---------EEEE---------------
Confidence 3567789999999999999999999 667777666666421 1000 0000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.|+||||+. .+.......+..........+|.+++|+|+.. ....+.. +...+.+...
T Consensus 53 ---------~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~~~l~~~~~ 117 (301)
T 1ega_A 53 ---------EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VLNKLREGKA 117 (301)
T ss_dssp ---------ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HHHHHHSSSS
T ss_pred ---------ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HHHHHHhcCC
Confidence 234568899999987 44433322222333445667899999999976 3322211 2222233357
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
|.++++||+|+.+.. ..+......+.+..+...++ +|++.+.+++++++.+....
T Consensus 118 P~ilvlNK~D~~~~~---~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 118 PVILAVNKVDNVQEK---ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CEEEEEESTTTCCCH---HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CEEEEEECcccCccH---HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 889999999998721 11223333343333444444 78999999998888775443
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=127.08 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
...+....+-++++|.+|+|||||+|+|+.. +.......+|.+.... ..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~t~~~~---------------~~------------ 64 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR----KIAFVSKTPGKTRSIN---------------FY------------ 64 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS----CCSCCCSSCCCCCCEE---------------EE------------
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC----ccccccCCCCCccCeE---------------EE------------
Confidence 3445556778999999999999999999953 2122222222200000 00
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+..+.++||||+... ......+ ....+.....++.+++|+|+.......... +
T Consensus 65 -------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-----~ 125 (195)
T 3pqc_A 65 -------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRL-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-----M 125 (195)
T ss_dssp -------------EETTTEEEEECCCBSSSCCCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----H
T ss_pred -------------EECCcEEEEECCCCccccCChhhHHHHHHH-HHHHHhcCcCceEEEEEecCCCCCCHHHHH-----H
Confidence 12345889999996532 1111111 122233345678999999987543222111 2
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+.....|.++|+||+|+.+.++.....+.+...+...+. .+++ .|++++.|+++++..+
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-YTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-SCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-CceEEEecCCCCCHHHHHHHH
Confidence 234445567899999999999776543344455555544333 3444 7999999999988765
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=133.81 Aligned_cols=209 Identities=18% Similarity=0.119 Sum_probs=111.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeee---eecCCCceeecc--
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW---VELANGCICCTV-- 103 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~---~~l~~gcicc~~-- 103 (257)
.+.++++++|++|+||||++++|+.. ..+++++++..|++... .+...-.........+.. ....+||+||..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKE-LPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSC-CSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccc-cCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 45689999999999999999999742 26889999999998421 100000000000000000 112356666642
Q ss_pred chhHHHHHHHHHHh-cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 104 KHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 104 ~~~~~~~l~~~~~~-~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
.......+.+.+.. ..+++++||||||..++....... ......... +.+++++|+.......+............
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~--~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG--VRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHH--HHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhH--HHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 11112222222221 235899999999987553321100 000011234 78999999876544333211000001122
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCc---c---hHHHHHHH------------------HHHhCCCCEEE-EeecCCcChhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSG---D---SLDELEKE------------------IHEINSLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~---~---~l~~~~~~------------------l~~~~~~a~i~-~s~~~~~~~~~l 237 (257)
.+...|.++|+||+|+.+..+.. + ..+.+... ++..++..+++ +|++++.+++++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 44567899999999998753210 0 01111111 23445553444 899999999999
Q ss_pred hcCcc
Q 025133 238 LNCRA 242 (257)
Q Consensus 238 ~~~~~ 242 (257)
+..+.
T Consensus 248 ~~~i~ 252 (262)
T 1yrb_A 248 ETLAY 252 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=122.31 Aligned_cols=168 Identities=13% Similarity=0.171 Sum_probs=94.5
Q ss_pred cccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeecc
Q 025133 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (257)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (257)
....+..+.+.++++|.+|+|||||+|+|+... ........+|.+.... ..
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~---------------~~----------- 65 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRK---NLARTSSKPGKTQTLN---------------FY----------- 65 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC----------------CCEE---------------EE-----------
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCC---CccccCCCCCceeeEE---------------EE-----------
Confidence 334555677889999999999999999999521 1233333333211100 00
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCC
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~ 177 (257)
..+..+.++||||+..+ ......+ ....+.....++.+++|+|+.......+..
T Consensus 66 --------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----- 125 (195)
T 1svi_A 66 --------------IINDELHFVDVPGYGFAKVSKSEREAWGRM-IETYITTREELKAVVQIVDLRHAPSNDDVQ----- 125 (195)
T ss_dssp --------------EETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----
T ss_pred --------------EECCcEEEEECCCCCccccCHHHHHHHHHH-HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-----
Confidence 01235889999997653 1111111 112223334568999999998643322210
Q ss_pred hhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 178 ~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...+.+...|.++|+||+|+.+..+.....+++.+.+.. .+..+++ .|++++.|+++++..+
T Consensus 126 ~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 126 MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-DPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-cCCCceEEEEccCCCCHHHHHHHH
Confidence 1223344556889999999999875432222333333321 3345666 7899999999988754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=127.08 Aligned_cols=180 Identities=24% Similarity=0.346 Sum_probs=118.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.+.++|+|++|+|||||+++|+.. ....+++++.++++. ..|...+... +. ....+.+||.||....++.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~~---~~~~~~~~~~~~l~~~~~~ 108 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKH--GA---KVVPLNTGKECHLDAHLVG 108 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTT--TC---EEEEEECTTCSSCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhc--CC---cEEEecCCceEeccHHHHH
Confidence 35788999999999999999999874 334688999999874 3444444331 11 3345667888776555554
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+. ..+++++++|++|.. .+.. + . ...+..+.|+|+........ .+ ..++..
T Consensus 109 ~~~~~l~--~~~~d~~~id~~g~i~~~~s----~------~--~~~~~~~~v~~~~~~~~~~~------~~---~~~~~~ 165 (226)
T 2hf9_A 109 HALEDLN--LDEIDLLFIENVGNLICPAD----F------D--LGTHKRIVVISTTEGDDTIE------KH---PGIMKT 165 (226)
T ss_dssp HHHTTSC--GGGCSEEEEECCSCSSGGGG----C------C--CSCSEEEEEEEGGGCTTTTT------TC---HHHHTT
T ss_pred HHHHHHh--cCCCCEEEEeCCCCccCcch----h------h--hccCcEEEEEecCcchhhHh------hh---hhHhhc
Confidence 4433221 346799999999943 2211 1 1 01234567888654322111 12 234678
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+++|+||+|+.+..+ ...+.+...++..++.++++ .|++++.++++++..+
T Consensus 166 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 166 ADLIVINKIDLADAVG--ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEeccccCchhH--HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHH
Confidence 9999999999976421 12567777788777777877 6889999999988754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=129.86 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=97.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|.++++|.+|+|||||+|+|+. .+ ..+.+.+|.+...... ...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g----~~-~~v~~~pg~Tv~~~~~-------------~~~------------------ 44 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTN----AN-QRVGNWPGVTVEKKTG-------------EFL------------------ 44 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHT----TS-EEEEECTTSSSEEEEE-------------EEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHC----CC-CCccCCCCceEEEEEE-------------EEE------------------
Confidence 46799999999999999999994 33 3455666642211100 011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+..+.|+||||...... ..+.+. ...+ ....+|.+++|+|++....... +...+..+
T Consensus 45 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~-~~~~-~~~~~d~vi~VvDas~~~~~~~-------l~~~l~~~ 109 (256)
T 3iby_A 45 ------LGEHLIEITDLPGVYSLVANAEGISQDEQIA-AQSV-IDLEYDCIINVIDACHLERHLY-------LTSQLFEL 109 (256)
T ss_dssp ------ETTEEEEEEECCCCSSCC------CHHHHHH-HHHH-HHSCCSEEEEEEEGGGHHHHHH-------HHHHHTTS
T ss_pred ------ECCeEEEEEeCCCcccccccccCCCHHHHHH-HHHH-hhCCCCEEEEEeeCCCchhHHH-------HHHHHHHc
Confidence 1234678999999765432 111111 1111 1246899999999998533221 12233344
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+..........+.+...+ . .+++ +|++++.|+++++..+...
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l----g-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISIDTEKLESLL----G-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEECHHHHHHHH----C-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCcCCcHHHHHHHHHHc----C-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999987655444445544433 2 3454 8999999999998877443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=127.34 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=118.2
Q ss_pred EEEccccccccCcccCC-----CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc------chhh
Q 025133 12 VRIDETTHEFSNSHEND-----DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAM 78 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-----~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~------d~~~ 78 (257)
++++++.+.|+....+. -.+..+++|+|++|||||||+|.|+.. ..+.+++++..++++ ... .+..
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~-~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS-TRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG-GSSCCCSSCCGGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc-cccccchHHHhhh
Confidence 45677777776543322 224568999999999999999999853 236789999988764 211 1111
Q ss_pred hhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHH-HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEE
Q 025133 79 INEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSII 157 (257)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~-~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi 157 (257)
+.. +.-....-+...+.||++.+......+.+. ....+++++||||||+.++..... ..+|.++
T Consensus 109 i~~----v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~-----------~~~d~vl 173 (337)
T 2qm8_A 109 MAR----LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA-----------DLTDFFL 173 (337)
T ss_dssp STT----GGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH-----------TTSSEEE
T ss_pred hee----eccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH-----------hhCCEEE
Confidence 110 000000011112235665554444444331 124689999999999987743321 2468899
Q ss_pred EEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCC-cchHHHHHHHHHHhCC-----CCEEE-EeecC
Q 025133 158 TVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERS-GDSLDELEKEIHEINS-----LAHVI-RSVRC 230 (257)
Q Consensus 158 ~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~-~~~l~~~~~~l~~~~~-----~a~i~-~s~~~ 230 (257)
+|+|+..... .... .. ...+.++++++||+|+....+. ....+.+...+...+| ..+++ +|+..
T Consensus 174 ~v~d~~~~~~-~~~i------~~--~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~ 244 (337)
T 2qm8_A 174 VLMLPGAGDE-LQGI------KK--GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLH 244 (337)
T ss_dssp EEECSCC-------C------CT--THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTT
T ss_pred EEEcCCCccc-HHHH------HH--HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence 9999864422 1100 00 1235689999999998653211 0112333333333342 34554 89999
Q ss_pred CcChhhhhcCcc
Q 025133 231 QVDLSEVLNCRA 242 (257)
Q Consensus 231 ~~~~~~l~~~~~ 242 (257)
+.++++|++.+.
T Consensus 245 g~gi~~L~~~I~ 256 (337)
T 2qm8_A 245 GKGLDSLWSRIE 256 (337)
T ss_dssp TBSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999887663
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=127.27 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=99.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. .+ ..+.+.+|.+..... ....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g----~~-~~v~~~~g~t~~~~~-------------~~~~------------------ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG----SR-QRVGNWAGVTVERKE-------------GQFS------------------ 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT----TC-EEEEECTTSSSEEEE-------------EEEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhC----CC-cccCCCCCeeEEEEE-------------EEEE------------------
Confidence 35689999999999999999994 33 456667774221110 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+..+.|+||||...... ..+.+. ..+......|.+++|+|+.+...... +...+...
T Consensus 47 ------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~--~~~~~~~~~d~ii~VvD~~~~~~~~~-------~~~~l~~~ 111 (274)
T 3i8s_A 47 ------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA--CHYILSGDADLLINVVDASNLERNLY-------LTLQLLEL 111 (274)
T ss_dssp ------CSSCEEEEEECCCCSCSCC----CCHHHHHH--HHHHHHTCCSEEEEEEEGGGHHHHHH-------HHHHHHHH
T ss_pred ------eCCCceEEEECcCCCccccccccCCHHHHHH--HHHHhhcCCCEEEEEecCCChHHHHH-------HHHHHHhc
Confidence 1235678999999765431 111110 11111246899999999998543322 22334556
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
..|.++|+||+|+.+........+.+.+.+ ....+.+|++++.|+++++..+....
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l----g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRIEIDALSARL----GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEECHHHHHHHH----TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEECccchhhhhHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999986554333344444433 22234489999999999988775443
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-15 Score=134.26 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=78.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+|+|+ +.+.+++...+|++.+... ....
T Consensus 235 kV~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~-------------~~i~-------------------- 277 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIE-------------ECFI-------------------- 277 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC----------------------C-------------EEEE--------------------
T ss_pred EEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEE-------------EEEE--------------------
Confidence 38999999999999999998 4445667777765221110 1111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~viv 192 (257)
..+..+.|+||||+.++....+.+.+.........+|.+++|+|++........ . .....+.++ ..|.++|
T Consensus 278 ----~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~---~~~~~l~~l~~~piIvV 349 (476)
T 3gee_A 278 ----HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL-T---EIRELKAAHPAAKFLTV 349 (476)
T ss_dssp ----ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGH-H---HHHHHHHHCTTSEEEEE
T ss_pred ----ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh-H---HHHHHHHhcCCCCEEEE
Confidence 123458899999998766555544434445566789999999999865432100 0 011222222 4578999
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+... ... ..+.+.+...-+.+|++++.|+++++..+.
T Consensus 350 ~NK~Dl~~~~~----~~~--~~l~~~~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 350 ANKLDRAANAD----ALI--RAIADGTGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp EECTTSCTTTH----HHH--HHHHHHHTSCEEECBTTTTBSHHHHHHHHT
T ss_pred EECcCCCCccc----hhH--HHHHhcCCCceEEEEECCCCCHHHHHHHHH
Confidence 99999987643 111 223332112234489999999999988774
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=132.67 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=84.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC-----------CCeEEEEecCCCcccccchhhhhcCCCCceeee----eeec
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-----------GKRIAVILNEFGEEIGVERAMINEGEGGALVEE----WVEL 94 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~-----------~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~----~~~l 94 (257)
...|.++|+|++|+|||||+|+|+.... ....++..++.+. +..+..++... ...... -..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~~~~--~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALVVDP--EKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceeeecC--cccHHHHhhhcccc
Confidence 4678999999999999999999996421 0113344444332 21221111110 000000 0123
Q ss_pred CCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHH--HHHhccc-ccccccceeeeeEEEEEeccch-HHHHh
Q 025133 95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAP--LASVLWL-DDQLESAVRLDSIITVVDAKNL-LFQID 170 (257)
Q Consensus 95 ~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~-~~~~~~~~~~~~vi~vvDa~~~-~~~~~ 170 (257)
.++|+||+.+.++.. +++||||||+..+.. ..+.+.. .........+|.+++|+|+... .....
T Consensus 140 ~~~~~~~~~~~~ll~------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~ 207 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLE------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF 207 (550)
T ss_dssp CTTEEEEECCCHHHH------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH
T ss_pred cccceEEeccccccC------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH
Confidence 489999999877653 267999999886322 1110000 0011123467999999999763 11111
Q ss_pred hhccCCChhHHHHHHhhcCEEEEeCCCCCCcCC
Q 025133 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 171 ~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
.. +...+.+...+.++|+||+|+++.++
T Consensus 208 ~~-----~l~~l~~~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 208 SE-----AIGALRGHEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp HH-----HHHHTTTCGGGEEEEEECGGGSCHHH
T ss_pred HH-----HHHHHHhcCCCEEEEEECCCccCHHH
Confidence 00 12223344567899999999998654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-14 Score=121.45 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=93.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. ... .+.+.+|.+...... ...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g----~~~-~~~~~~~~t~~~~~~-------------~~~------------------ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG----LRQ-HVGNWPGVTVEKKEG-------------IME------------------ 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT----TCE-EEEECTTSSCEEEEE-------------EEE------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhC----CCc-ccCCCCCeEEEeeEE-------------EEE------------------
Confidence 46789999999999999999994 333 445555532211100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~ 188 (257)
..+..+.++||||...... ..+.+ ...+-....+|.+++|+|+......... ...+.... .|
T Consensus 47 ------~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~~~~~d~vi~v~D~~~~~~~~~~-------~~~~~~~~~~p 111 (271)
T 3k53_A 47 ------YREKEFLVVDLPGIYSLTAHSIDELI--ARNFILDGNADVIVDIVDSTCLMRNLFL-------TLELFEMEVKN 111 (271)
T ss_dssp ------ETTEEEEEEECCCCSCCCSSCHHHHH--HHHHHHTTCCSEEEEEEEGGGHHHHHHH-------HHHHHHTTCCS
T ss_pred ------ECCceEEEEeCCCccccccCCHHHHH--HHHhhhccCCcEEEEEecCCcchhhHHH-------HHHHHhcCCCC
Confidence 1234578999999765322 11101 0011112357999999999986433221 12223344 78
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|+||+|+.+..........+.+.+ + .+++ +|+..+.|+++++..+.
T Consensus 112 ~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g--~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 112 IILVLNKFDLLKKKGAKIDIKKMRKEL---G--VPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp EEEEEECHHHHHHHTCCCCHHHHHHHH---S--SCEEECBGGGTBTHHHHHHHHH
T ss_pred EEEEEEChhcCcccccHHHHHHHHHHc---C--CcEEEEEeCCCCCHHHHHHHHH
Confidence 899999999876544333344444433 2 3344 79999999998887763
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-15 Score=134.97 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=84.3
Q ss_pred cccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeecc
Q 025133 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (257)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (257)
-+...+.+.|.++++|.+|+|||||+|+|+ +.+.+++...+|.+.. .... ..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~t~~----~~~~-----------~~--------- 66 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRD----RIYS-----------SA--------- 66 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHE----EEEEC---------------CEEE-----------EC---------
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCccee----EEEE-----------EE---------
Confidence 344456678999999999999999999998 5566666666664211 1100 00
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
...+..+.++||||+..... +.+.+. .........+|.+++|+|+.......+.. +...+
T Consensus 67 -------------~~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~VvD~~~~~~~~d~~-----l~~~l 127 (456)
T 4dcu_A 67 -------------EWLNYDFNLIDTGGIDIGDEPFLAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKIL 127 (456)
T ss_dssp -------------TTCSSCCEEECCCC------CCHHHHH-HHHHHHHHHCSEEEEEEESSSCSCHHHHH-----HHHHH
T ss_pred -------------EECCceEEEEECCCCCCcchHHHHHHH-HHHHhhHhhCCEEEEEEeCCCCCChHHHH-----HHHHH
Confidence 02345688999999763211 111110 11112234689999999998754443321 23334
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
.+...+.++|+||+|+....+ .... ...+.-...+.+|+..+.+++++++....
T Consensus 128 ~~~~~pvilV~NK~D~~~~~~------~~~e-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 128 YRTKKPVVLAVNKLDNTEMRA------NIYD-FYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp TTCCSCEEEEEECC---------------CC-SGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred HHcCCCEEEEEECccchhhhh------hHHH-HHHcCCCceEEeecccccchHHHHHHHHh
Confidence 444678899999999875431 1111 11223334556899999999988877643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-14 Score=130.47 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=86.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|.++++|.+|+|||||+|+|+ +.+.+++...+|.+. |. .. ....
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~T~--d~--~~---------~~~~------------------ 45 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTR--DP--VQ---------DTVE------------------ 45 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHH----C----------------CC--SE---------EEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCCcc--ce--ee---------EEEE------------------
Confidence 4789999999999999999999 556677777777521 11 10 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH-H-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPA-P-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~-~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.++||||+.... . +.+.+. .........+|.+++|+|+.......+.. +...+.....+.
T Consensus 46 ------~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~~~~ad~il~V~D~~~~~~~~d~~-----i~~~l~~~~~p~ 113 (439)
T 1mky_A 46 ------WYGKTFKLVDTCGVFDNPQDIISQKMK-EVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDT 113 (439)
T ss_dssp ------ETTEEEEEEECTTTTSSGGGCCCHHHH-HHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCE
T ss_pred ------ECCeEEEEEECCCccccccchHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence 123457899999976421 0 100000 11112345689999999997644333221 233344456788
Q ss_pred EEEEeCCCCCCcCCCcchHHHH-HHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDEL-EKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~-~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
++|+||+|+.... .... .. +.++.-...+.+|+.++.|++++++.+.
T Consensus 114 ilv~NK~D~~~~~-----~~~~~~~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 161 (439)
T 1mky_A 114 ILVANKAENLREF-----EREVKPE-LYSLGFGEPIPVSAEHNINLDTMLETII 161 (439)
T ss_dssp EEEEESCCSHHHH-----HHHTHHH-HGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred EEEEeCCCCcccc-----HHHHHHH-HHhcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 9999999976420 1112 22 2233322345589999999999887763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-14 Score=121.33 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. .+.. +.+.+|.+...... ...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g----~~~~-~~~~pg~tv~~~~~-------------~~~------------------ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG----TKQY-VANWPGVTVEKKEG-------------VFT------------------ 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT----TCEE-EEECTTSCCEEEEE-------------EEE------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHC----CCCc-ccCCCCceEEEEEE-------------EEE------------------
Confidence 45689999999999999999994 3322 45556642211100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||...... ..+.+. ...+ .....+.+++|+|+.+...... +...+.....|.
T Consensus 49 ------~~~~~~~l~DtpG~~~~~~~~~~e~v~-~~~~-~~~~~d~ii~V~D~t~~~~~~~-------~~~~l~~~~~pv 113 (258)
T 3a1s_A 49 ------YKGYTINLIDLPGTYSLGYSSIDEKIA-RDYL-LKGDADLVILVADSVNPEQSLY-------LLLEILEMEKKV 113 (258)
T ss_dssp ------ETTEEEEEEECCCCSSCCSSSHHHHHH-HHHH-HHSCCSEEEEEEETTSCHHHHH-------HHHHHHTTTCCE
T ss_pred ------ECCeEEEEEECCCcCccCCCCHHHHHH-HHHH-hhcCCCEEEEEeCCCchhhHHH-------HHHHHHhcCCCE
Confidence 1235688999999764321 111110 0111 1135799999999997644322 122223346788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+............+...+ + .+++ +|++++.|+++++..+
T Consensus 114 ilv~NK~Dl~~~~~i~~~~~~l~~~l---g--~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 114 ILAMTAIDEAKKTGMKIDRYELQKHL---G--IPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp EEEEECHHHHHHTTCCBCHHHHHHHH---C--SCEEECCTTTCTTHHHHHHHH
T ss_pred EEEEECcCCCCccchHHHHHHHHHHc---C--CCEEEEEeeCCcCHHHHHHHH
Confidence 99999999876544333334443333 2 3455 7999999999988766
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-14 Score=131.46 Aligned_cols=164 Identities=19% Similarity=0.263 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+-++++|.+|+|||||+|+|+. .+...+...+|++...-.. ...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~----~~~~~~~~~~gtt~~~~~~-------------~~~----------------- 239 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLG----EERVIVSNVAGTTRDAVDT-------------SFT----------------- 239 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT----STTEEECC------CTTSE-------------EEE-----------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhC----CCccccCCCCCeEEEEEEE-------------EEE-----------------
Confidence 456789999999999999999994 3335666666642211100 011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHH---HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPL---ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~---~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+...... .+.+.....+.....++++++|+|+.......+.. +...+...+.
T Consensus 240 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----~~~~~~~~~~ 307 (456)
T 4dcu_A 240 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK 307 (456)
T ss_dssp -------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred -------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----HHHHHHHcCC
Confidence 12345789999997543211 00000011122345679999999998754333221 2333344567
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+..+ ...+++.+.+++.. ++++++ +|++++.++++++..+.
T Consensus 308 ~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDE--STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp EEEEEEECGGGSCCCS--SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred CEEEEEEChhcCCCch--HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 8899999999987554 23455556565543 245555 89999999999887653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=132.58 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=82.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+|+|+. .+.+++...+|++. ..... ...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~----~~~a~v~~~~gtT~----d~~~~---------~i~-------------------- 268 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQ----SDRAIVTDLPGTTR----DVVES---------QLV-------------------- 268 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----HHBSCCSCCTTCCH----HHHHH---------EEE--------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhC----CCcccccCCCCeeE----EEEEE---------EEE--------------------
Confidence 389999999999999999984 22334444455311 11110 001
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~viv 192 (257)
..+..+.|+||||+.++....+.+...........+|.+++|+|+........ ...+.++ ..+.++|
T Consensus 269 ----~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV 336 (462)
T 3geh_A 269 ----VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILV 336 (462)
T ss_dssp ----ETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEE
T ss_pred ----ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEE
Confidence 22456789999999776665555444445556677899999999986433221 1122333 2578899
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+.... . .++.+....+++ +|++++.|+++++..+.
T Consensus 337 ~NK~Dl~~~~~~----~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 337 MNKIDLVEKQLI----T----SLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp EECTTSSCGGGS----T----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EECCCCCcchhh----H----HHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 999999876432 1 111122233444 89999999998887763
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-15 Score=134.30 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=83.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.|.++++|.+|+|||||+|+|+ +.+.+++...+|.+. ..... ...
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~T~----d~~~~---------~~~------------------ 47 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTR----DRIYS---------SAE------------------ 47 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHE----EEECC---------------CEEE---------ECT------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCCcc----ceEEE---------EEE------------------
Confidence 4789999999999999999998 445566666666421 11100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 112 EQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.++||+|+.... .+.+.+. .........+|.+++|+|+.......+.. +...+.....|.+
T Consensus 48 ------~~~~~~~l~DT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~vvD~~~~~~~~d~~-----~~~~l~~~~~pvi 115 (436)
T 2hjg_A 48 ------WLNYDFNLIDTGGIDIGDEPFLAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKILYRTKKPVV 115 (436)
T ss_dssp ------TCSSCCEEEC---------CHHHHHH-HHHHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHTTCCSCEE
T ss_pred ------ECCceEEEEECCCCCCcchhHHHHHH-HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEE
Confidence 234568899999976321 1111111 11122345689999999998754433321 2233334456889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
+|+||+|+...... .. . +.++.-...+.+|+.++.|++++++.+....
T Consensus 116 lv~NK~D~~~~~~~---~~---~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 116 LAVNKLDNTEMRAN---IY---D-FYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp EEEECCCC-----C---CC---S-SGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred EEEECccCccchhh---HH---H-HHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 99999998764321 01 1 1122222345689999999999988764443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-14 Score=127.95 Aligned_cols=164 Identities=23% Similarity=0.232 Sum_probs=93.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|++|+|||||+|.|+. ...+++.+.+|++...... ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g----~~~~~v~~~~gtT~d~~~~-------------~i~----------------- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN----KERALVSPIPGTTRDPVDD-------------EVF----------------- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT----STTEEECCCC------CCE-------------EEE-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhC----CcccccCCCCCCcCCceEE-------------EEE-----------------
Confidence 346799999999999999999994 4445677777752211100 011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH----HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA----SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~----~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
..+.++.++||+|+....... +.+.....+......+.+++|+|+.......+.. +...+....
T Consensus 225 -------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-----i~~~l~~~~ 292 (439)
T 1mky_A 225 -------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-----MAGLMERRG 292 (439)
T ss_dssp -------ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTT
T ss_pred -------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcC
Confidence 122357799999985433222 1111011122334578999999997643322211 223344556
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++|+||+|+.+..+ ...+++...+... ..+++++ +|++++.++++++..+.
T Consensus 293 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 293 RASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp CEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCEEEEEECccCCCchh--hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 78899999999986542 1234444444322 1344555 89999999999987664
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-14 Score=132.36 Aligned_cols=154 Identities=25% Similarity=0.288 Sum_probs=93.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+.. +.+++...+|++.+... ....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~----~~a~vs~~~gTT~d~~~-------------~~i~~------------------ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE----DRAIVTDIPGTTRDVIS-------------EEIVI------------------ 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH----TBCCCCCSSCCSSCSCC-------------EEEEE------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCC----CCCccCCCCCeeeeeEE-------------EEEec------------------
Confidence 46899999999999999999953 33455666665221111 11111
Q ss_pred HHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCE
Q 025133 113 QLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~v 190 (257)
.+..+.|+||||+. ++....+.+.....+.....+|.+++|+|+.......+. .....+ ..|.+
T Consensus 289 ------~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--------~il~~l~~~pii 354 (482)
T 1xzp_A 289 ------RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--------KILERIKNKRYL 354 (482)
T ss_dssp ------TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--------HHHHHHTTSSEE
T ss_pred ------CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--------HHHHHhcCCCEE
Confidence 23458899999987 554322222112223344578999999998764322111 111222 45779
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCE-EEEeecCCcChhhhhcCcc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAH-VIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~-i~~s~~~~~~~~~l~~~~~ 242 (257)
+|+||+|+.+... .+++...+ ....+ +.+|++++.|+++++..+.
T Consensus 355 vV~NK~DL~~~~~----~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 355 VVINKVDVVEKIN----EEEIKNKL---GTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEEEECSSCCCCC----HHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EEEECcccccccC----HHHHHHHh---cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 9999999976422 34444432 22223 4489999999999987763
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-14 Score=119.06 Aligned_cols=154 Identities=22% Similarity=0.251 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|.... ..+.+-+|.+..... ..+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-----~~v~~~pg~tv~~~~---------------~~~~---------------- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-----QRVGNWPGVTVERKS---------------GLVK---------------- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-----CCCCSSSCCCCSCEE---------------EECT----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-----CcccCCCCCcEEEEE---------------EEEe----------------
Confidence 3568999999999999999999531 123344453111000 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
. +..+.++||||...... ..+.+. ...+. ....|.+++|+|+++...... +...+.....|.
T Consensus 47 ------~-~~~l~l~DtpG~~~~~~~~~~e~v~-~~~~~-~~~~d~vi~V~D~t~~e~~~~-------~~~~l~~~~~p~ 110 (272)
T 3b1v_A 47 ------K-NKDLEIQDLPGIYSMSPYSPEAKVA-RDYLL-SQRADSILNVVDATNLERNLY-------LTTQLIETGIPV 110 (272)
T ss_dssp ------T-CTTEEEEECCCCSCSSCSSHHHHHH-HHHHH-TTCCSEEEEEEEGGGHHHHHH-------HHHHHHHTCSCE
T ss_pred ------c-CCeEEEEECCCcCccCCCChHHHHH-HHHHh-cCCCCEEEEEecCCchHhHHH-------HHHHHHhcCCCE
Confidence 1 35688999999765321 111110 11111 135789999999987543211 122223346788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++|+||+|+............+...+ + .+++ +|++++.|+++++..+.
T Consensus 111 ilv~NK~Dl~~~~~~~~~~~~l~~~l---g--~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKINVDKLSYHL---G--VPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHHHH---T--SCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEChhhCCcCCcHHHHHHHHHHc---C--CCEEEEEccCCCCHHHHHHHHH
Confidence 99999999875433322334444333 2 3444 79999999999988763
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=109.57 Aligned_cols=152 Identities=24% Similarity=0.224 Sum_probs=84.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|-++++|.+|+|||||+++|... +.......++.+.... .....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~-------------~~~~~------------------ 45 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLK-------------EGVVE------------------ 45 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC----CC-----------CCE-------------EEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecce-------------EEEEE------------------
Confidence 467899999999999999999853 2122222222211000 00001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 112 EQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.++||||..... .+.... .......+.+++|+|+.......... +...+.+...
T Consensus 46 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~ 109 (161)
T 2dyk_A 46 ------TDRGRFLLVDTGGLWSGDKWEKKIQEKV-----DRALEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGK 109 (161)
T ss_dssp ------ETTEEEEEEECGGGCSSSSCCHHHHHHH-----HHHTTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTC
T ss_pred ------eCCceEEEEECCCCCCccchHHHHHHHH-----HHHHHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCC
Confidence 122357899999977521 111110 11223578999999998743222211 2233444567
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|.++|+||+|+.+..+. .. +.. +.+-..-+..|++++.|+++++..+
T Consensus 110 p~ilv~nK~Dl~~~~~~---~~---~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 110 PVILVATKVDDPKHELY---LG---PLY-GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp CEEEEEECCCSGGGGGG---CG---GGG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CEEEEEECcccccchHh---HH---HHH-hCCCCCeEEEecccCCChHHHHHHH
Confidence 88999999999875321 11 112 2222122448999999999988754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-14 Score=128.73 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=92.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+|+|+. .....+...+|++.+.-. ....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~----~~~~~~~~~~gtT~d~~~-------------~~~~----------------- 219 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG----EERVIVSNVAGTTRDAVD-------------TSFT----------------- 219 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT----STTEEEC---------CC-------------EEEE-----------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC----CCceeecCCCCceeeeeE-------------EEEE-----------------
Confidence 446789999999999999999994 333555666664221100 0011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+....... +.+.....+.....++.+++|+|+.......+.. +...+.....
T Consensus 220 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-----~~~~~~~~~~ 287 (436)
T 2hjg_A 220 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK 287 (436)
T ss_dssp -------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred -------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-----HHHHHHHcCC
Confidence 122347899999975432110 0000001112334578999999998754332211 2223333456
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+. ..+++.+.+.+.. .+++++ +|++++.++++++...
T Consensus 288 ~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDES--TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp EEEEEEECGGGSCCCTT--HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred cEEEEEECccCCCcchH--HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 78999999999876542 2233444343321 345555 8999999999987655
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-13 Score=106.29 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=88.9
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.....+-++|+|.+|+|||||+++|+.. +.......+. .+.....+ .
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~----~~~~~~~~~t--~~~~~~~~-------------~-------------- 59 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA----QSSSKHITAT--VGYNVETF-------------E-------------- 59 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC----C----CCCCC--SSEEEEEE-------------E--------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC----CCcccccccc--cceeEEEE-------------E--------------
Confidence 4456678999999999999999999842 2221111111 11111000 0
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l 185 (257)
..+..+.|+||||.......... ....++.+++|+|+........... . +...... +
T Consensus 60 ----------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~-~--~~~~~~~~~~ 118 (199)
T 4bas_A 60 ----------KGRVAFTVFDMGGAKKFRGLWET--------YYDNIDAVIFVVDSSDHLRLCVVKS-E--IQAMLKHEDI 118 (199)
T ss_dssp ----------ETTEEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTSHHH
T ss_pred ----------eCCEEEEEEECCCCHhHHHHHHH--------HHhcCCEEEEEEECCcHHHHHHHHH-H--HHHHHhChhh
Confidence 22456889999997544332221 1235789999999986532111000 0 1111111 1
Q ss_pred --------hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHH----hCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --------AFADVVILNKVDLVSPERSGDSLDELEKEIHE----INSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --------~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~----~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+.++|+||+|+.+... ..++...+.. ......++ +|++++.++++++..+.
T Consensus 119 ~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 119 RRELPGGGRVPFLFFANKMDAAGAKT----AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp HSBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hhcccccCCCCEEEEEECcCCCCCCC----HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 557889999999987744 3334333321 11334555 79999999999887664
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=109.78 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred EEEEccccccccCcccCCCc---ceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCc
Q 025133 11 AVRIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA 86 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~-v~ii~~~~g~~~~~d~~~~~~~~~~~ 86 (257)
+++++++++.|+. ..+.+. +...++++|++|||||||+|.|+. .. .+.+...+|.+...
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g----~~~~~~~~~~~G~~~~~------------ 65 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTN----QKSLARTSKTPGRTQLI------------ 65 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCC----C-------------CCE------------
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhC----CCccccccCCCccceee------------
Confidence 4788999999874 333332 334799999999999999999984 22 23333444431100
Q ss_pred eeeeeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccccceeeeeEEEE
Q 025133 87 LVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLESAVRLDSIITV 159 (257)
Q Consensus 87 ~~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~~~~~~~vi~v 159 (257)
....+ +..+.++||||..... .+...+ ...+.....++.++++
T Consensus 66 ---~~~~~-------------------------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 115 (210)
T 1pui_A 66 ---NLFEV-------------------------ADGKRLVDLPGYGYAEVPEEMKRKWQRAL--GEYLEKRQSLQGLVVL 115 (210)
T ss_dssp ---EEEEE-------------------------ETTEEEEECCCCC------CCHHHHHHHH--HHHHHHCTTEEEEEEE
T ss_pred ---EEEEe-------------------------cCCEEEEECcCCcccccCHHHHHHHHHHH--HHHHHhhhcccEEEEE
Confidence 00000 1146799999975421 111110 1112222346788999
Q ss_pred EeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhh
Q 025133 160 VDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 160 vDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.......+.. +...+.....+.+++.||+|+.+..+....++.+...+.+.......+ +|+..+.++++++
T Consensus 116 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 116 MDIRHPLKDLDQQ-----MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp EETTSCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHH
T ss_pred EECCCCCchhHHH-----HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHH
Confidence 9987543221110 122334445677888999999876432122445555555443333333 6889999999888
Q ss_pred cCcc
Q 025133 239 NCRA 242 (257)
Q Consensus 239 ~~~~ 242 (257)
..+.
T Consensus 191 ~~l~ 194 (210)
T 1pui_A 191 QKLD 194 (210)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=118.13 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+..+++++++|++|+|||||+|.|+.. . ..+.+.++.+.+.... ...+
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~----~-~~~~~~~~~T~d~~~~-------------~i~~-------------- 223 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGL----T-QKVDTKLFTTMSPKRY-------------AIPI-------------- 223 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC----------------CCSCEE-------------EEEE--------------
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCC----C-ccccCCcccccCCEEE-------------EEEE--------------
Confidence 346788999999999999999999942 2 2333444432211111 1111
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
.+..+.++||+|+.. |....+.+ ...+.....+|.+++|+|++.......... ..+...+.++
T Consensus 224 ----------~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~~~~aD~il~VvD~s~~~~~~~~~~--~~~~~~L~~l~ 289 (364)
T 2qtf_A 224 ----------NNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSEAKYSDALILVIDSTFSENLLIETL--QSSFEILREIG 289 (364)
T ss_dssp ----------TTEEEEEEECCCBCSSCCGGGHHHH--HHHHHGGGGSSEEEEEEETTSCHHHHHHHH--HHHHHHHHHHT
T ss_pred ----------CCEEEEEEeCCCchhcCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCcchHHHHH--HHHHHHHHHhC
Confidence 123467999999643 44333332 122334566899999999876431111000 0012233343
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+.++|.||+|+.+... ....+.+....+.+ .+..+++ +|+.++.++++++..+.
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY 349 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 346788999999987531 01122232233444 3333444 79999999999987663
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-14 Score=125.20 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++-|+++|++|||||||+|+|.... . .+.+.+.++...... ...+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~----~-~i~~~~ftTl~p~~g-------------~v~~----------------- 202 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK----P-KIADYHFTTLVPNLG-------------MVET----------------- 202 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC----C-EESSTTSSCCCCCEE-------------EEEC-----------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC----C-ccccCCccccCceEE-------------EEEe-----------------
Confidence 3468999999999999999998532 1 123333331211100 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-----HHHHhhhccCCChhHHHHH--
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-----LFQIDKYRHLSSYPEAIHQ-- 184 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-----~~~~~~~~~~~~~~~~~~q-- 184 (257)
.....++|+||||+.+.......+. ...+++..+++.+++|+|++.. ...+.. +...+.+
T Consensus 203 ------~~~~~~~l~DtPG~i~~a~~~~~l~-~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~------~~~eL~~~~ 269 (342)
T 1lnz_A 203 ------DDGRSFVMADLPGLIEGAHQGVGLG-HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLT------INQELSEYN 269 (342)
T ss_dssp ------SSSCEEEEEEHHHHHHHTTCTTTTH-HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHH------HHHHHHHSC
T ss_pred ------CCCceEEEecCCCCcccccccchhH-HHHHHHHHhccEEEEEEECCcccccChHHHHHH------HHHHHHHhh
Confidence 1125688999999643211000000 1123445568999999999652 222111 1112222
Q ss_pred ---HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 185 ---IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 185 ---l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
...|.++|+||+|+.+.. +.+....+.+....+++ +|+.++.++++++..+....
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp SSTTTSCBCBEEECTTSTTHH------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred hhhcCCCEEEEEECccCCCCH------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 246789999999998653 22333333333223444 89999999999988774433
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-14 Score=111.79 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=85.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|... ....+...++.+.+.. .....+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~----~~~~~~~~~~~t~~~~-------------~~~~~~------------------ 49 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR----EAAIVTDIAGTTRDVL-------------REHIHI------------------ 49 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS----CCSCCCSSTTCCCSCE-------------EEEEEE------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----CcceeeCCCCceecee-------------eEEEEE------------------
Confidence 35889999999999999999853 2222333444311110 011111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~ 189 (257)
.+..+.++||||+.......+.+.....+.....++.+++|+|+......... .+...+.+. ..|.
T Consensus 50 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-----~~~~~~~~~~~~~~p~ 118 (172)
T 2gj8_A 50 ------DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-----EIWPEFIARLPAKLPI 118 (172)
T ss_dssp ------TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-----HHCHHHHHHSCTTCCE
T ss_pred ------CCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHHhcccCCCE
Confidence 12346799999986543222211111112234567899999999754321110 011122222 3567
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++|+||+|+.+.... . . .. ...+++ +|++++.++++++..+..
T Consensus 119 ilv~NK~Dl~~~~~~-~--~-------~~-~~~~~~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 119 TVVRNKADITGETLG-M--S-------EV-NGHALIRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp EEEEECHHHHCCCCE-E--E-------EE-TTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEECccCCcchhh-h--h-------hc-cCCceEEEeCCCCCCHHHHHHHHHH
Confidence 899999998653210 0 0 01 223455 799999999999887643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-12 Score=113.24 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=86.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..|++++++..|+.. .+....+... ...++.+ ..+....+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R-~aa~eqL~~~~~~~gvpv----------~~~~~~~dp 167 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR-PGAYHQLRQLLDRYHIEV----------FGNPQEKDA 167 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS-THHHHHHHHHHGGGTCEE----------ECCTTCCCH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCcE----------EecCCCCCH
Confidence 4568999999999999999999763 568999999998764 2211111110 0001100 111111122
Q ss_pred H----HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 V----QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~----~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
. ..+.... ..++|++||||+|... .......+. .+......+.+++|+|+........ ....+
T Consensus 168 ~~i~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~-------~a~~f 235 (443)
T 3dm5_A 168 IKLAKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYN-------QALAF 235 (443)
T ss_dssp HHHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH-------HHHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHH-------HHHHH
Confidence 2 2222221 3569999999999654 333333221 1223345688999999987644322 12223
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
.+.-....+|+||+|....
T Consensus 236 ~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 236 KEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHSCTTEEEEEECCSSCSS
T ss_pred HhhCCCeEEEEECCCCccc
Confidence 3222356789999998765
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=99.98 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|... +.......+|. +.. .....+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~----~~~~~~~~~~~----~~~-----------~~~~~~~---------------- 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK----QERDLHEQLGE----DVY-----------ERTLTVD---------------- 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC---------CCCSSS----SEE-----------EEEEEET----------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcC----CCccccCcccc----cee-----------EEEEEEC----------------
Confidence 346899999999999999999842 22222222232 100 0011111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc--HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----H
Q 025133 112 EQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~--~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l 185 (257)
.....+.++||||.... ..+.... ....+.+++|+|......... .. .+...+.+ -
T Consensus 49 ------~~~~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~---~~~~~l~~~~~~~ 110 (175)
T 2nzj_A 49 ------GEDTTLVVVDTWEAEKLDKSWSQESC--------LQGGSAYVIVYSIADRGSFES-AS---ELRIQLRRTHQAD 110 (175)
T ss_dssp ------TEEEEEEEECCC-------CHHHHHT--------TTSCSEEEEEEETTCHHHHHH-HH---HHHHHHHHCC---
T ss_pred ------CEEEEEEEEecCCCCccchhhhHHhh--------cccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhccC
Confidence 11235789999997642 1111111 123688999999986443211 10 01111222 1
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+..+. ..+....+....+ .+++ .|++++.|+++++..+
T Consensus 111 ~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREV--SVEEGRACAVVFD--CKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp -CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHH
Confidence 4577899999999875443 1233444443333 3555 7999999999988765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=106.58 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=87.6
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+-++|+|.+|+|||||+|+|+. .+.. ....++.+.... .. ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~----~~~~-~~~~~~~t~~~~------------~~-~~~---------------- 72 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR----ANVD-VQSYSFTTKNLY------------VG-HFD---------------- 72 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT----TCEE-EECC-----CEE------------EE-EEE----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC----CCCc-cCCCCCcceeee------------ee-eee----------------
Confidence 3456899999999999999999984 3333 222222211100 00 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHH----HHHhcccccccccceeeeeEEEEEeccchHHHH-hhhccCCChhHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQ 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~----~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~q 184 (257)
..+..+.|+||||..+... ..+...... + ....+.+++|+|+....... .. ....+.+
T Consensus 73 --------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~--~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~~ 135 (228)
T 2qu8_A 73 --------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITA-L--AHINGVILFIIDISEQCGLTIKE------QINLFYS 135 (228)
T ss_dssp --------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH-H--HTSSEEEEEEEETTCTTSSCHHH------HHHHHHH
T ss_pred --------cCCCeEEEEECCCCcCcccchhhhHHHHHHHH-h--hccccEEEEEEecccccCcchHH------HHHHHHH
Confidence 1234578999999853210 000000000 1 22357899999997642210 00 0112222
Q ss_pred H-----hhcCEEEEeCCCCCCcCCCcchH-HHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 185 I-----AFADVVILNKVDLVSPERSGDSL-DELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 185 l-----~~~~vivlNK~D~~~~~~~~~~l-~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+ ..|.++|+||+|+.+..+..... +.+....+..++..+++ +|++++.|+++++..+.
T Consensus 136 l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 136 IKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp HHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHH
Confidence 2 45778999999998765542222 23334334333334565 79999999999887653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-13 Score=106.82 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilV~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~NK~D 139 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPM--------YYRGSAAAVIVYDITKQDSFYTLK----KWVKELKEHGPENIVMAIAGNKCD 139 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCTHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEcCCCchhhHhhhHH--------hhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence 45789999996543322211 123468999999998654321110 012222222 456789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
+.+..+. ..+.+.+..+..+ .+++ +|++++.++++++..+.......
T Consensus 140 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 140 LSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp GGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 9754332 2455666555543 4555 79999999999998875544443
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-13 Score=105.73 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=83.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|+|||||+++|..... .....++.+. +.. . ....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-----~~~~~~~~t~--~~~----------~-~~~~------------------ 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-----YIGNWPGVTV--EKK----------E-GEFE------------------ 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-----SCC-----CC--CCC----------E-EEEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-----eccCCCCcce--eee----------E-EEEE------------------
Confidence 35689999999999999999985311 0111122101 100 0 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.++||||...... ..+.+. ...+ .....+.+++|+|+........ +...+.+...|.
T Consensus 47 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~D~~~~~~~~~-------~~~~~~~~~~p~ 111 (165)
T 2wji_A 47 ------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGANL 111 (165)
T ss_dssp ------ETTEEEEEEECCCCSCSSSSSHHHHHH-HHHH-HHHCCSEEEEEEETTCHHHHHH-------HHHHHHHTTCCE
T ss_pred ------ECCcEEEEEECCCcccCCCcchhHHHH-HHHH-hcCCCCEEEEEecCCchhHhHH-------HHHHHHhcCCCE
Confidence 1123577999999764321 111110 0111 1124689999999987543211 112223345678
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+..........+.+.. ..+ .+++ .|++++.|+++++..+
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~---~~~--~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 112 LLALNKMDLAKSLGIEIDVDKLEK---ILG--VKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHH---HHT--SCEEECBGGGTBSHHHHHHHH
T ss_pred EEEEEchHhccccChhhHHHHHHH---HhC--CCEEEEEcCCCCCHHHHHHHH
Confidence 999999998754332122233322 222 3444 8999999999988764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-13 Score=115.76 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCEEEEecCCCCC------cHH---HHHhcccccccccceeee-eEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLD-SIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 120 ~~~~ilIDt~G~~~------~~~---~~~~~~~~~~~~~~~~~~-~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..++.|+||||+.. +.. ....+. ...+. ..+ .+++|+|+.......+.. .+...+.....+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~il~v~d~~~~~~~~~~~----~~~~~~~~~~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT---KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRT 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHT---STTEEEEEEEESSSCGGGCHHH----HHHHHHCTTCSSE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHc---CCCeEEEEEecCCcchhhhHHH----HHHHHhCCCCCeE
Confidence 37899999999864 221 111111 11111 233 455899997643321110 0111222224577
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+.+.... ..+.+...+.... ++.+++ .|++++.++++++..+
T Consensus 196 i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 196 IGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp EEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred EEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHH
Confidence 999999999876431 1122211111111 233444 7999999998887663
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=103.19 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=87.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. .. .-. .+. .+.+.. ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~---~~-~~~--~~t--~~~~~~-------------~~~----------------- 56 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN---EV-VHT--SPT--IGSNVE-------------EIV----------------- 56 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT---SC-EEE--ECC--SCSSCE-------------EEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC---CC-CcC--cCC--CccceE-------------EEE-----------------
Confidence 4467899999999999999999952 11 111 111 111100 000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH---H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ---I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q---l 185 (257)
..+..+.++||||.......... ....++.+++|+|+..... ..... +...... -
T Consensus 57 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~ 116 (187)
T 1zj6_A 57 -------INNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTREE-----LYKMLAHEDLR 116 (187)
T ss_dssp -------ETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHHH-----HHHHHTSGGGT
T ss_pred -------ECCEEEEEEECCCCHhHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHHH-----HHHHHhchhhC
Confidence 12345789999997543222111 1234789999999986421 11111 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
..+.++|+||+|+.+... .+++...+... .....++ .|++++.|+++++..+.......
T Consensus 117 ~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 117 KAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CCeEEEEEECCCCcCCCC----HHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 456789999999987533 34555554331 1223555 78999999999988775444433
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=98.87 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=92.5
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
...+..-++|+|.+|+|||||+++|+.... .....++ .+ ........+.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~------------~~~~~~~~~~------------ 58 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KA------------DSYRKKVVLD------------ 58 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CC------------EEEEEEEEET------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cc------------eEEEEEEEEC------------
Confidence 344566799999999999999999985310 1111111 10 0000011111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .+...+.+.
T Consensus 59 ----------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~ 116 (206)
T 2bov_A 59 ----------GEEVQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKE 116 (206)
T ss_dssp ----------TEEEEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTT
T ss_pred ----------CEEEEEEEEcCCChhhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcC
Confidence 112457899999977665544322 12468999999998754321110 011112221
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..|.++|+||+|+.+..+. ..+.+..+.+..+ .+++ +|++++.|+++++..+.
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 117 DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccCccccccc--cHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 3467899999999875432 2455566665544 3555 89999999999887653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-14 Score=120.84 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.6
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
....|.++|+|.+|+|||||+|+|+..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 567899999999999999999999954
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=97.08 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=77.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+++|.. .+.......+|.+. + ....+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~----~~~~~~~~~~~~~~--~--------------~~~~~~------------------ 45 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG----VEDGPEAEAAGHTY--D--------------RSIVVD------------------ 45 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC----C----------CEE--E--------------EEEEET------------------
T ss_pred EEEEECCCCCCHHHHHHHHcC----ccccCCCCccccce--E--------------EEEEEC------------------
Confidence 478999999999999999984 23222222333211 0 001111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcC
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFAD 189 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~ 189 (257)
.....+.++||||.......... .....+.+++|+|......... ... +...+.+ -..|.
T Consensus 46 ----~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 46 ----GEEASLMVYDIWEQDGGRWLPGH--------CMAMGDAYVIVYSVTDKGSFEK-ASE---LRVQLRRARQTDDVPI 109 (166)
T ss_dssp ----TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHH-HHH---HHHHHHHCC---CCCE
T ss_pred ----CEEEEEEEEECCCCccchhhhhh--------hhhhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCE
Confidence 12345779999997654333221 1245688999999986543211 100 1111111 13467
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+.+..+. ..+.........+ ++++ .|++++.|+++++..+
T Consensus 110 ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 110 ILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHHHHH
T ss_pred EEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHH
Confidence 899999999876543 2233333333332 4666 7999999999988654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=103.08 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=89.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+...++++|.+|+|||||+++|+.. + ......++.+..... ....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~----~-~~~~~~~~~t~~~~~-------------~~~~----------------- 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE----N-VYIGNWPGVTVEKKE-------------GEFE----------------- 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT----C-EEEEECTTSCCEEEE-------------EEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----C-ccccCCCCeeccceE-------------EEEE-----------------
Confidence 4567999999999999999999842 2 233344443111100 0011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||...... ..+.+. ...+ .....+.+++|+|+..+..... +...+.....|
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~p 114 (188)
T 2wjg_A 51 -------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGAN 114 (188)
T ss_dssp -------ETTEEEEEEECCCCSCCSSSSHHHHHH-HHHH-HHHCCSEEEEEEEGGGHHHHHH-------HHHHHHTTTCC
T ss_pred -------eCCcEEEEEECCCcCccccccHHHHHH-HHHH-hccCCCEEEEEecchhHHHHHH-------HHHHHHhcCCC
Confidence 1234577999999765421 011010 0111 1123688999999987543211 11222233467
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
.++|.||+|+............+.+. .+ ..-+.+|++.+.++++++..+..
T Consensus 115 iilv~nK~Dl~~~~~~~~~~~~~~~~---~~-~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 115 LLLALNKMDLAKSLGIEIDVDKLEKI---LG-VKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp EEEEEECHHHHHHTTCCCCHHHHHHH---HT-SCEEECBGGGTBSHHHHHHHHHH
T ss_pred EEEEEEhhhccccccchHHHHHHHHH---hC-CCeEEEEecCCCCHHHHHHHHHH
Confidence 88999999987654332223333332 22 22344789999999998877643
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=102.55 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... .. .....+.+.. . ....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~--~~~~~t~~~~------------~-~~~~----------------- 63 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNA----QS--QNILPTIGFS------------I-EKFK----------------- 63 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGG----CC--SSCCCCSSEE------------E-EEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC----CC--CCcCCcccee------------E-EEEE-----------------
Confidence 445689999999999999999985310 00 0011101111 0 0111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+..+.|+||||......... .....++.+++|+|+........... . +...... -
T Consensus 64 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 125 (190)
T 2h57_A 64 -------SSSLSFTVFDMSGQGRYRNLWE--------HYYKEGQAIIFVIDSSDRLRMVVAKE-E--LDTLLNHPDIKHR 125 (190)
T ss_dssp -------CSSCEEEEEEECCSTTTGGGGG--------GGGGGCSEEEEEEETTCHHHHHHHHH-H--HHHHHHSTTTTTS
T ss_pred -------ECCEEEEEEECCCCHHHHHHHH--------HHHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHhChhhccC
Confidence 1235688999999765433221 11245789999999987532211100 0 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHH--HhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIH--EIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~--~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+.++|+||+|+.+... .+++...+. .+. ....++ .|++++.|+++++..+
T Consensus 126 ~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 126 RIPILFFANKMDLRDAVT----SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp CCCEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCeEEEEEeCcCcccCCC----HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 456789999999987543 455555553 221 234555 7899999999988765
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=95.16 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.++||||......... .....++.+++|+|+.......... .+...+.+ ...|.++|+
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGV--------AFYRGADCCVLVYDVTNASSFENIK----SWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp EEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred EEEEEEECCCChHhhhhhH--------HHhhcCCEEEEEEECCChHHHHHHH----HHHHHHHHHhcccCcCCCcEEEEE
Confidence 4578999999544332221 1123578999999998754321110 01111111 234679999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+...... ...+......+... ..+++ .|++++.|+++++..+
T Consensus 126 nK~Dl~~~~~~-v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 126 NKIDAEESKKI-VSEKSAQELAKSLG-DIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp ECTTSCGGGCC-SCHHHHHHHHHHTT-SCCEEEEBTTTTBSHHHHHHHH
T ss_pred ECCcccccccc-CCHHHHHHHHHhcC-CCeEEEEecCCCCCHHHHHHHH
Confidence 99999654321 12344444444333 33444 8999999999988765
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=100.96 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|.. .+......- .+.+.. ...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~----~~~~~~~~t----~~~~~~-------------~~~------------------ 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD----DRLGQHVPT----LHPTSE-------------ELT------------------ 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC----C------CC----CCCSCE-------------EEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhc----CCCCccCCC----CCceeE-------------EEE------------------
Confidence 34689999999999999999984 222211111 111100 011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~ 188 (257)
..+..+.++||||......... . ....++.+++|+|+........... . +..... ....|
T Consensus 66 ------~~~~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~D~~~~~s~~~~~~-~--~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 66 ------IAGMTFTTFDLGGHIQARRVWK-----N---YLPAINGIVFLVDCADHERLLESKE-E--LDSLMTDETIANVP 128 (198)
T ss_dssp ------ETTEEEEEEEECC----CCGGG-----G---GGGGCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTSC
T ss_pred ------ECCEEEEEEECCCcHhhHHHHH-----H---HHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHhCcccCCCc
Confidence 1224577999999653322111 1 1235789999999986532111000 0 111111 12457
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---------------CCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---------------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---------------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++|.||+|+.... ..+++.+.+.... ...+++ .|++++.|+++++..+
T Consensus 129 iilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 129 ILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp EEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred EEEEEECCCccccC----CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHH
Confidence 78999999997632 2456666554321 233555 7999999999988765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=98.32 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLY--------MKNGQGFALVYSITAQSTFNDLQ----DLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCcCCCcEEEEEECc
Confidence 457899999976554443322 12368999999998654321110 011122222 35678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..+......+.. +..+++ .|++++.|+++++..+
T Consensus 119 Dl~~~~~~--~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 119 DLEDERVV--GKEQGQNLARQW-CNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp TCGGGCCS--CHHHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccC--CHHHHHHHHHHc-cCCcEEEecCCCCCCHHHHHHHH
Confidence 99865432 234455544443 345666 7999999999988754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-13 Score=113.52 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=87.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+...++|+|.+|+|||||+|+|+.. +.......++. ++... ......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~----~~~~~~~~~~~---~t~~~---------~~~~~~---------------- 67 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK----QAFESKLGSQT---LTKTC---------SKSQGS---------------- 67 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS----CCSCCCTTSCC---CCCSC---------EEEEEE----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC----CCcccCCCCCc---eeeee---------EEEEEE----------------
Confidence 34567999999999999999999943 21111111210 00000 000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+.++.|+||||+.+.. .+.+.+. .........++.+++|+|+.++...... +...+.+.
T Consensus 68 --------~~~~~i~iiDTpG~~~~~~~~~~~~~~i~-~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~ 132 (260)
T 2xtp_A 68 --------WGNREIVIIDTPDMFSWKDHCEALYKEVQ-RCYLLSAPGPHVLLLVTQLGRYTSQDQQ------AAQRVKEI 132 (260)
T ss_dssp --------ETTEEEEEEECCGGGGSSCCCHHHHHHHH-HHHHHHTTCCSEEEEEEETTCCCHHHHH------HHHHHHHH
T ss_pred --------eCCCEEEEEECcCCCCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEEeCCCCCHHHHH------HHHHHHHH
Confidence 224568899999976532 1111110 0111123467999999999863222111 12223333
Q ss_pred -----hhcCEEEEe-CCCCCCcCCCcchH-----HHHHHHHHHhCCC----CEEEEeecCCcChhhhhcCcc
Q 025133 186 -----AFADVVILN-KVDLVSPERSGDSL-----DELEKEIHEINSL----AHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 -----~~~~vivlN-K~D~~~~~~~~~~l-----~~~~~~l~~~~~~----a~i~~s~~~~~~~~~l~~~~~ 242 (257)
..+.++++| |+|+.+.. ....+ ..+...++.+... ..+.+|+..+.++++++..+.
T Consensus 133 ~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~ 203 (260)
T 2xtp_A 133 FGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIE 203 (260)
T ss_dssp HCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHH
Confidence 457788888 99998542 11101 1133344444322 123468888889988877653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=102.29 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~iilV~D~~~~~s~~~~~----~~~~~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 457899999976544433221 23478999999998754332110 012223332 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+.. ....++ .|++++.|+++++..+
T Consensus 143 l~~~~~v--~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 143 CETDREI--TRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp GGGGCCS--CHHHHHHHHHTS-TTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhc-CCCeEEEEeCCCCCCHHHHHHHH
Confidence 9765432 234444444433 334555 7999999999988754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=98.71 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-H---hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I---AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l---~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+ . ..|.++|+||+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 119 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKEDENVPFLLVGNKS 119 (168)
T ss_dssp EEEEEEECCC---CHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTTSCEEEEEECG
T ss_pred EEEEEEECCCcchhHHHHHHH--------hhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence 457899999976655444322 22468999999998654321110 01111212 1 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..++.....+..+ .+++ .|++++.|+++++..+
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 120 DLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred cccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHH
Confidence 99865432 2455556555544 3555 7899999999888754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=99.63 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+... .......+ .+ ........+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t-~~------------~~~~~~~~~~--------------- 62 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE------FVEDYEPT-KA------------DSYRKKVVLD--------------- 62 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC------CCCSCCTT-CC------------EEEEEEEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC------CCCcCCCc-cc------------eEEEEEEEEC---------------
Confidence 44568999999999999999998531 01111111 00 0000011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHH---h
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI---A 186 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql---~ 186 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .+...+ ... .
T Consensus 63 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~ 123 (187)
T 2a9k_A 63 -------GEEVQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKEDEN 123 (187)
T ss_dssp -------TEEEEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTT
T ss_pred -------CEEEEEEEEECCCCcccHHHHHHH--------hccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence 112457899999977655544322 12468999999998654321110 011111 221 3
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.|.++|+||+|+.+..+. ..+++....+..+ .+++ +|++++.++++++..+
T Consensus 124 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 124 VPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp CCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHH
Confidence 567899999999865432 2455666665543 3555 7899999999888765
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=95.49 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+ ...|.++|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFSVDDSQSFQNLS----NWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGG--------GTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEEeCCCchhhhhhHHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHccccccCCCcEEEEE
Confidence 357899999976554443221 23468999999998754321110 01111211 234678999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+..... ..+.+....+... ..+++ .|++++.|+++++..+
T Consensus 124 nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 124 NKIDISERQV---STEEAQAWCRDNG-DYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp ECTTCSSCSS---CHHHHHHHHHHTT-CCCEEECCTTTCTTHHHHHHHH
T ss_pred ECCccccccc---CHHHHHHHHHhcC-CceEEEEeCCCCCCHHHHHHHH
Confidence 9999984332 2455555555333 33455 7999999999888765
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-12 Score=98.99 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=85.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.+.++++|.+|+|||||+++|+..... ....++. ..+... ....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~~~~--~~~~~~-----------~~~~----------------- 51 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-----EQEAGGI--TQHIGA-----------YQVT----------------- 51 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-----CSSCCSS--STTCCC-----------CEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-----cCCCCce--eEeeeE-----------EEEE-----------------
Confidence 4667999999999999999999853110 0011111 000000 0000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.++||||....... .......++.+++|+|+.......... ..........|.+
T Consensus 52 -------~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p~i 111 (178)
T 2lkc_A 52 -------VNDKKITFLDTPGHEAFTTM--------RARGAQVTDIVILVVAADDGVMPQTVE-----AINHAKAANVPII 111 (178)
T ss_dssp -------ETTEEEEESCCCSSSSSSCS--------CCSSCCCCCEEEEEEETTCCCCHHHHH-----HHHHHGGGSCCEE
T ss_pred -------eCCceEEEEECCCCHHHHHH--------HHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHhCCCCEE
Confidence 12345679999996543211 112335678999999987632111100 1112222345789
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCC-------CCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINS-------LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-------~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+||+|+.+.. ...+...++.... ..+++ .|++++.|+++++..+
T Consensus 112 lv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 112 VAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp EEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred EEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 999999998743 2344444433221 13555 7899999999888765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=97.31 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPM--------YYRGAAAAIIVFDVTNQASFERAK----KWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhhHH--------HhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence 45789999996433222111 123468999999998654321110 012222222 345788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~ 247 (257)
+.+..+. ..+.+....+..+ .+++ .|++++.++++++..+......
T Consensus 129 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 129 LLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9865432 2345555554432 4555 7999999999999887554443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=100.47 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.......... . +...+.+. ..+.++|+||+|
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPX--------YYRNAQAALVVYDVTKPQSFIKAR-H---WVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCChhhhhhhhh--------hhccCcEEEEEEecCChHHHHHHH-H---HHHHHHHhcCCCCcEEEEEECCC
Confidence 45789999996543322221 123468999999998754321110 0 11112111 345678999999
Q ss_pred CCCcCCCc-chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSG-DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~-~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..... -..+......+..+ .+++ .|++++.++++++..+..
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKG--LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHT
T ss_pred ccccccccCCCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHH
Confidence 98653211 11233333333332 3555 789999999999877643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=96.37 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=85.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|+.. +.. ....++. +.+.. .....+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~~--~~~~~-----------~~~~~~~--------------- 54 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITTI--GVDFK-----------IRTVEIN--------------- 54 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTTB--SEEEE-----------EEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCCc--eeEEE-----------EEEEEEC---------------
Confidence 4567899999999999999999842 111 1112221 11100 0011111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----- 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----- 185 (257)
.....+.++||||........ ......++.+++|+|+......... ...+.++
T Consensus 55 -------~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~ 112 (181)
T 3tw8_B 55 -------GEKVKLQIWDTAGQERFRTIT--------STYYRGTHGVIVVYDVTSAESFVNV-------KRWLHEINQNCD 112 (181)
T ss_dssp -------TEEEEEEEEEETTGGGCSSCC--------GGGGTTCSEEEEEEETTCHHHHHHH-------HHHHHHHHHHCT
T ss_pred -------CEEEEEEEEcCCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCC
Confidence 112457899999943221111 1123456899999999875432221 1122222
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+.... ............+ .+++ +|++++.|+++++..+
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG--IQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp TSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEEECCCCchhccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 2456899999998865432 2234444444443 2444 7999999999988765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=94.31 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||......... . ....++.+++|+|+......... . .+...+.+ -..|.++|+||+|
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGP-----I---YYRDSNGAILVYDITDEDSFQKV-K---NWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEEECCCC-------C-----C---SSTTCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEEECCCcHhhhhhHH-----H---HhccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCeEEEEEECcc
Confidence 3577899999654332221 1 12357899999999875432111 0 01112222 2346689999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++.+. ..+......+..+ .+++ .|++++.|+++++..+
T Consensus 123 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 123 LEKERHV--SIQEAESYAESVG--AKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHH
Confidence 9875432 2345555555543 4555 8999999999988765
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=118.61 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEE-----ecCCCcccccchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVI-----LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii-----~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
...+...++++|..|+|||||+++|+.... .+++ ..+.|.+++.... ...
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---~~~~d~~~~e~~~GiTi~~~~~-------------~~~--------- 69 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS---TSAHDKLPESQKRGITIDIGFS-------------AFK--------- 69 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------CCC-------------EEE---------
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc---ccccccccccccCccEEecceE-------------EEE---------
Confidence 334556799999999999999999985320 0111 1111211100000 000
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+..+.|+||||..+ +... .......+|.+++|+|+.......... ....+
T Consensus 70 ---------------~~~~~i~iiDtPGh~~---~~~~-----~~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~ 121 (482)
T 1wb1_A 70 ---------------LENYRITLVDAPGHAD---LIRA-----VVSAADIIDLALIVVDAKEGPKTQTGE-----HMLIL 121 (482)
T ss_dssp ---------------ETTEEEEECCCSSHHH---HHHH-----HHHHTTSCCEEEEEEETTTCSCHHHHH-----HHHHH
T ss_pred ---------------ECCEEEEEEECCChHH---HHHH-----HHHHHhhCCEEEEEEecCCCccHHHHH-----HHHHH
Confidence 1234688999999632 2211 112234579999999998643221111 12344
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh--CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI--NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~--~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+++.+.++++||+|+.+++......+++...++.. .+..+++ .|++++.|+++|++.+.
T Consensus 122 ~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 184 (482)
T 1wb1_A 122 DHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 184 (482)
T ss_dssp HHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHH
Confidence 556778899999999997543323345555656543 1234555 79999999998887653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=98.79 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=85.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. +......-.|. ... ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~t~~~----~~~-------------~~~----------------- 61 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIGS----NVE-------------EIV----------------- 61 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT----SCEEEECCSSS----SCE-------------EEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC----CCCccCCcCce----eeE-------------EEE-----------------
Confidence 4456899999999999999999953 22222222221 100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH---H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ---I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q---l 185 (257)
..+..+.++||||......... .....++.+++|+|+...... .... +...... .
T Consensus 62 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~D~~~~~s~~~~~~~-----~~~~~~~~~~~ 121 (181)
T 2h17_A 62 -------INNTRFLMWDIGGQESLRSSWN--------TYYTNTEFVIVVVDSTDRERISVTREE-----LYKMLAHEDLR 121 (181)
T ss_dssp -------ETTEEEEEEEESSSGGGTCGGG--------GGGTTCCEEEEEEETTCTTTHHHHHHH-----HHHHHTCGGGT
T ss_pred -------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHHH-----HHHHHhChhhC
Confidence 1234578999999754322211 112357899999999864221 1110 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+.++|+||+|+.+... .+++...+... .....++ .|++++.|+++++..+
T Consensus 122 ~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 122 KAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCeEEEEEECCCcccCCC----HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 346788999999987533 34444444221 1222455 7899999999988654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=100.12 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=86.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. + ......+.+... ....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~----~----~~~~~~t~~~~~-------------~~~~----------------- 58 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE----D----VDTISPTLGFNI-------------KTLE----------------- 58 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC----C----CSSCCCCSSEEE-------------EEEE-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC----C----CCcccccCccce-------------EEEE-----------------
Confidence 3456899999999999999999842 1 111111011110 0001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||........ . .....++.+++|+|+........... . +...... ...
T Consensus 59 -------~~~~~~~~~Dt~G~~~~~~~~-----~---~~~~~~d~ii~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 120 (186)
T 1ksh_A 59 -------HRGFKLNIWDVGGQKSLRSYW-----R---NYFESTDGLIWVVDSADRQRMQDCQR-E--LQSLLVEERLAGA 120 (186)
T ss_dssp -------ETTEEEEEEEECCSHHHHTTG-----G---GGCTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHhHHHHH-----H---HHhcCCCEEEEEEECcCHHHHHHHHH-H--HHHHHhChhcCCC
Confidence 123457899999974322111 1 12345789999999986432111000 0 1111111 235
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... .+++...+... ....+++ .|++++.++++++..+.
T Consensus 121 piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 121 TLLIFANKQDLPGALS----CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cEEEEEeCccCCCCCC----HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 6789999999987643 34454444321 2233555 78999999998887653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-12 Score=114.06 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=67.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||......... .....+|.+++|+|+.... ...... ....+.++.. +.++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~--------~~~~~~D~~ilVvda~~~~~~~qt~~-----~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATML--------SGAALMDGAILVVAANEPFPQPQTRE-----HFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHH--------HHHTTCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHH--------HHHhhCCEEEEEEECCCCCCcHHHHH-----HHHHHHHcCCCCEEEEEECccc
Confidence 4688999999543322221 1234579999999998753 111110 1223344444 56889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++.....+++.+.++... ...+++ .|++++.++++|++.+.
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 987543233444555444332 234555 79999999999988774
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=99.02 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+...... .... .+...+... ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~D 124 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTA--------YYRGAMGFILMYDITNEESF-NAVQ---DWSTQIKTYSWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TGGGCSEEEEEEETTCHHHH-HHHH---HHHHHHHHHSCSSCEEEEEEECTT
T ss_pred EEEEEEECCCchhhcchHHH--------hhcCCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 45789999998655443322 12357899999999865432 1110 011222221 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ .|++++.++++++..+.
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 125 MEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp CTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHHHHH
Confidence 9875432 2344444444443 3555 78999999988877653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=92.96 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----QYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCCchhhhHHHHHh--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEch
Confidence 457899999976654443321 12468899999998654321110 011222222 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... .+...+..+..+ ..-+..|++.+.++++++..+
T Consensus 119 Dl~~~~~~---~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 119 DLAARTVE---SRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp TCSCCCSC---HHHHHHHHHHHT-CCEEEECTTTCTTHHHHHHHH
T ss_pred hhhhcccC---HHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHH
Confidence 99874332 344444444443 223348999999999888755
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=7e-12 Score=112.82 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=33.3
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhc
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~ 239 (257)
...|.++|+||+|+... ..+..+.+.+... .++++ +|+..+.++.+++.
T Consensus 213 ~~kP~i~v~NK~D~~~~----~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 213 VNKPMVIAANKADAASD----EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHSCEEEEEECGGGSCH----HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred cCCCEEEEEeCccccch----HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence 35799999999998732 2355555544432 34554 89999989987765
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=96.63 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||......... .....++.+++|+|+........ .. .+...+.+ ...|.++|+||+|
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 127 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTH--------AYYRDAHALLLLYDVTNKASFDN-IQ---AWLTEIHEYAQHDVALMLLGNKVD 127 (180)
T ss_dssp EEEEEEECCCC----------------CCGGGCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECCS
T ss_pred EEEEEEeCCCcHHHHHHHH--------HHccCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 4578999999654333221 12345789999999987543211 10 01122222 2346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+......+..+ .+++ .|++++.++++++..+.
T Consensus 128 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 128 SAHERVV--KREDGEKLAKEYG--LPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp TTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9875432 2334444444443 2444 79999999999887653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=100.15 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ....+. ...+. . ...+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~------~~~~~~--~~~~~------------~-~~~~~~-------------- 50 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY------RDTQTS--ITDSS------------A-IYKVNN-------------- 50 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC------CCBCCC--CSCEE------------E-EEECSS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------ccccCC--cceee------------E-EEEecC--------------
Confidence 345789999999999999999985310 000111 00000 0 011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
..+..+.++||||...... +...+ ...++.+++|+|+............. +...+..
T Consensus 51 -------~~~~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~ 113 (214)
T 2fh5_B 51 -------NRGNSLTLIDLPGHESLRFQLLDRF--------KSSARAVVFVVDSAAFQREVKDVAEF--LYQVLIDSMALK 113 (214)
T ss_dssp -------TTCCEEEEEECCCCHHHHHHHHHHH--------GGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHTST
T ss_pred -------CCccEEEEEECCCChhHHHHHHHHH--------HhhCCEEEEEEECCCcCHHHHHHHHH--HHHHHhhhhhcc
Confidence 1135688999999764433 22211 23478999999998743322211000 1111111
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
...|.++|.||+|+.+........+.+.+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp TCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 13467899999999877553333344444443
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=97.92 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=88.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|+.... ......+ .+.+.. . ....+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~----------~-~~~~~~--------------- 60 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF------MADCPHT-IGVEFG----------T-RIIEVS--------------- 60 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC------CSSCTTS-CCCCEE----------E-EEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC------CCCCCCc-cceEEE----------E-EEEEEC---------------
Confidence 455689999999999999999985311 0000110 111100 0 001110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
.....+.|+||||........... ...++.+++|+|+......... . .+...+.+ ...
T Consensus 61 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~ 121 (179)
T 1z0f_A 61 -------GQKIKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNT 121 (179)
T ss_dssp -------TEEEEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred -------CeEEEEEEEECCCChHhhhhHHHH--------hccCCEEEEEEeCcCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence 112457899999965433332211 2346899999999876432111 0 01112222 234
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+. ..+++.+..+..+ .+++ .|++++.++++++..+
T Consensus 122 piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 122 VIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred cEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 56899999999765432 2455556555543 4555 7999999999888654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=98.47 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=85.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||+++|..... . ....+.+.+. ....
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~----~----~~~~t~~~~~-------------~~~~------------------- 63 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRL----A----TLQPTWHPTS-------------EELA------------------- 63 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC----C----CCCCCCSCEE-------------EEEE-------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----C----ccccCCCCCe-------------EEEE-------------------
Confidence 4689999999999999999985311 1 1111011110 0011
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~ 189 (257)
..+..+.++||||......... .. ...++.+++|+|+........... . +..... ....|.
T Consensus 64 -----~~~~~~~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~pi 127 (190)
T 1m2o_B 64 -----IGNIKFTTFDLGGHIQARRLWK-----DY---FPEVNGIVFLVDAADPERFDEARV-E--LDALFNIAELKDVPF 127 (190)
T ss_dssp -----ETTEEEEEEECCCSGGGTTSGG-----GG---CTTCCEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCCE
T ss_pred -----ECCEEEEEEECCCCHHHHHHHH-----HH---HhcCCEEEEEEECCChHHHHHHHH-H--HHHHHcchhhcCCCE
Confidence 1224577999999754322211 11 235789999999986532111000 0 111111 123577
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN----------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+.+... .+++.+.++... ...+++ .|++++.|+++++..+
T Consensus 128 ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 128 VILGNKIDAPNAVS----EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp EEEEECTTSTTCCC----HHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCCcCCCC----HHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 88999999986322 455555544321 233455 7999999999988754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=98.54 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+........ .. .+...+.+. ..+.++|+||+|
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITT--------AYYRGAMGFLLMYDIANQESFAA-VQ---DWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEECCSCCSSCCSGG--------GGGTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHhhhHH--------HhccCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 4578999999654322111 12235789999999976543211 10 012222222 356789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++.+.|+++++..+
T Consensus 139 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 139 LEDERVV--PAEDGRRLADDLG--FEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 9865432 2344455555443 3555 7999999999988765
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-12 Score=98.52 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.++||||........... ....+.+++|+|+........ .. .+...+.+. ..|.++|+||
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~-~~---~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSITSRQSLEE-LK---PIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHH--------HHHCSEEEEEEETTCHHHHHT-TH---HHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEECCCchhhHHHHHHh--------cccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHHhCCCCCCCEEEEEEc
Confidence 457899999987655443321 123689999999986543211 10 011222222 3577899999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+.+..+.. ........+..+ .+++ .|++++.|+++++..+..
T Consensus 119 ~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 119 CDESPSREVQ--SSEAEALARTWK--CAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp GGGGGGCCSC--HHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccccC--HHHHHHHHHHhC--CeEEEecCCCCcCHHHHHHHHHH
Confidence 9998754431 223333333332 3555 799999999999887643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=98.16 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPM--------YYRGSAAAIIVYDITKEETFSTLK----NWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhcccHh--------hCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECCc
Confidence 45789999997543222211 123468999999998754322110 012222332 234567779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++++.++++++..+
T Consensus 123 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 123 LTDVREV--MERDAKDYADSIH--AIFVETSAKNAININELFIEI 163 (170)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHH
Confidence 9875442 1233444444433 4555 7999999999988765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.6e-12 Score=111.02 Aligned_cols=160 Identities=20% Similarity=0.196 Sum_probs=89.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|++|+|||||+|+|+.. . ..+...++.+.+.. .. ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~----~-~~~~~~~~~t~~~~------------~~-~~~---------------- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA----K-PEIASYPFTTRGIN------------VG-QFE---------------- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS----C-CEEECCTTCSSCEE------------EE-EEE----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC----C-CccCCCCCeeecee------------EE-EEE----------------
Confidence 45678999999999999999999853 2 12233333211111 00 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHH----HHHhcccccccccceeeeeEEEEEeccchHH-HHhhhccCCChhHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~----~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~-~~~~~~~~~~~~~~~~q 184 (257)
..+..+.++||||..+... ..+.. .........+.+++|+|++.... ...... .+...+.+
T Consensus 211 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~~~~~~~ad~illV~D~s~~~~~~~~~~~---~~~~~i~~ 276 (357)
T 2e87_A 211 --------DGYFRYQIIDTPGLLDRPISERNEIEKQ---AILALRYLGNLIIYIFDPSEHCGFPLEEQI---HLFEEVHG 276 (357)
T ss_dssp --------ETTEEEEEEECTTTSSSCSTTSCHHHHH---HHHGGGGTCSEEEEEECTTCTTSSCHHHHH---HHHHHHHH
T ss_pred --------ecCceEEEEeCCCccccchhhhhHHHHH---HHHHHHhcCCEEEEEEeCCccccCCHHHHH---HHHHHHHH
Confidence 1234578999999754311 00000 00011124688999999875321 000000 01111222
Q ss_pred -H-hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 185 -I-AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 185 -l-~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
. ..+.++|+||+|+....+ ++.....++..+. .-+.+|++++.|+++++..+.
T Consensus 277 ~~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~-~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 277 EFKDLPFLVVINKIDVADEEN----IKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp HTTTSCEEEEECCTTTCCHHH----HHHHHHHHHHTTC-CCEECBTTTTBTHHHHHHHHH
T ss_pred hcCCCCEEEEEECcccCChHH----HHHHHHHHHhcCC-CeEEEeCCCCcCHHHHHHHHH
Confidence 2 567889999999987532 3445555544332 224489999999999987664
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-11 Score=95.80 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHH------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQ------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~q------l~~~~vivl 193 (257)
..+.|+||||........ ......++.+++|+|+.......... .+. ..... ...|.++|+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKTLD----SWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp EEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred EEEEEEeCCCcHHHHHhH--------HHHHhCCcEEEEEEECCCHHHHHHHH----HHHHHHHHhcccccCCCCcEEEEE
Confidence 457899999954321111 11223578999999998654321110 011 11111 244779999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+..... ..+....+.+.. ...+++ +|++++.|+++++..+.
T Consensus 125 nK~Dl~~~~~---~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 125 NKIDLENRQV---ATKRAQAWCYSK-NNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp ECTTSSCCCS---CHHHHHHHHHHT-TSCCEEECBTTTTBSHHHHHHHHH
T ss_pred ECCCCccccc---CHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHH
Confidence 9999985432 234444444433 334455 79999999998887663
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=112.22 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+..... ......+|.+++|+|+......... ..+..........++.+ .++++||+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~--------~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNM--------IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CeEEEEEECCChHHHHHHH--------HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 4578999999964332221 1234468999999999875421000 00000012233445666 67899999
Q ss_pred CCCCcCC----CcchHHHHHHHHHHhCC----CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSPER----SGDSLDELEKEIHEINS----LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~~~----~~~~l~~~~~~l~~~~~----~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+.+. ..+..+++...++++.- ..+++ +|++++.|+.++.+
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9975321 11223344444444331 34555 89999999988654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-12 Score=109.17 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=38.5
Q ss_pred eeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Eee
Q 025133 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSV 228 (257)
Q Consensus 151 ~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~ 228 (257)
.+++.+++++|+.. .....+.. +...+.. ..|.++|+||+|+++.++.....+.+.+.+... ..+++ .|+
T Consensus 114 ~r~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa 185 (274)
T 3t5d_A 114 NRVQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPE 185 (274)
T ss_dssp CCCCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC--
T ss_pred CceeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCC
Confidence 45678888887664 22222211 1122222 568899999999987655322333444444432 23344 677
Q ss_pred cCCcChhhhhcC
Q 025133 229 RCQVDLSEVLNC 240 (257)
Q Consensus 229 ~~~~~~~~l~~~ 240 (257)
..+.++++++..
T Consensus 186 ~~~~~~~~l~~~ 197 (274)
T 3t5d_A 186 TDDEEENKLVKK 197 (274)
T ss_dssp ---------CHH
T ss_pred CCChhHHHHHHH
Confidence 777777665443
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=98.23 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPM--------YYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhhhhhHH--------hccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 45789999996543322211 123468999999998654321110 011122222 234566779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.++.+. ..++.....+.. ..+++ .|++++.++++++..+..
T Consensus 123 l~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 123 LANKRAV--DFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9765432 234444544443 24555 799999999999877643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-11 Score=94.43 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.++||||........... ...++.+++|+|+........... ...+...+.++ ..|.++|.||
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~D~~~~~~~~~~~s-~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASRKLI--------LRGVDGIVFVADSAPNRLRANAES-MRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEECCSCCSCSHHHHHH--------TTTCCEEEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeCCChHHHHHHHHHH--------HhcCCEEEEEEECCcchhhHhHHH-HHHHHHHHHhhccccCCCCEEEEEEc
Confidence 457899999976554443322 234689999999984322111000 00011222332 4577889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+|+.+... .+++.+.++..+-..-+..|++++.|+++++..+
T Consensus 145 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 145 RDLPDALP----VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp TTSTTCCC----HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHH
T ss_pred hhcccccC----HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHH
Confidence 99987633 5666666655432123347999999999988765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=95.45 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... . ....+.+++|+|+........ .. .+...+.+. ..|.++|.||+
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~----~---~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDH----C---LQTGDAFLIVFSVTDRRSFSK-VP---ETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEECCCCC--------CH----H---HHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCccccchhhhhh----h---hccCCEEEEEEECCChHHHHH-HH---HHHHHHHhcccCCCCCEEEEeeCc
Confidence 457799999986543322110 1 123689999999987433211 10 011111111 35778999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..+......+..+ ++++ .|++++.++++++...
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 120 DLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp TCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred chhhcccC--CHHHHHHHHHHcC--CcEEEecCccCCCHHHHHHHH
Confidence 99865432 2344444444443 3555 7999999999988654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-11 Score=96.30 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHhhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~~~~vivlNK~D~~ 199 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+ .....+.++|+||+| .
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~----~~~~~i~~~~~~piilv~NK~D-~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPL--------YYRGATCAIVVFDISNSNTLDRAK----TWVNQLKISSNYIIILVANKID-K 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCCEEEEEEECTT-C
T ss_pred eEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHhhCCCcEEEEEECCC-c
Confidence 57889999995433222211 123468999999998764322110 011111 112357799999999 3
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+ ...+++..+++..+ .+++ .|++.+.++++++..+
T Consensus 160 ~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 160 NKFQ--VDILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp C-CC--SCHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHH
T ss_pred cccc--CCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHH
Confidence 3222 23566667666643 3555 8999999999988765
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=99.44 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRP--------LSYADSDVVLLCFAVNNRTSFDNIST---KWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHhH--------hhccCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 3467999999543221111 11235789999999987644322100 122223322 3577899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+........+......+..+-..-+..|++++.|+++++..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHH
Confidence 86433223355666666665433234489999999999887663
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=94.35 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........ .......+.+++|+|+........ .. .+...+.+. ..|.++|+||+|
T Consensus 52 ~~~~l~D~~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTIT--------TAYYRGAMGIILVYDITDERTFTN-IK---QWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEECCTTGGGTSCCC--------HHHHTTEEEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhH--------HHHhccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECcc
Confidence 357899999953221111 111235789999999986543211 10 012222222 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... ..+......+..+ .+++ .|++++.++++++..+.
T Consensus 120 l~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 120 METRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp CTTCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHHHH
T ss_pred CCcCcc---CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHH
Confidence 954332 2344444444443 2444 79999999999887653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=93.50 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=62.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||........... ...++.+++|+|+........... . +...... -..|.++|+||+
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~piilv~nK~ 111 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERVNEARE-E--LMRMLAEDELRDAVLLVFANKQ 111 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHH--------TTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCEEEEEEECT
T ss_pred CEEEEEEEcCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH-H--HHHHHhchhhcCCeEEEEEECc
Confidence 3568899999986554433221 235789999999986532111000 0 1111111 135678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+... ...+...+... ....+++ .|++++.|+++++..+.
T Consensus 112 Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 112 DLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 9987543 34444433221 1223455 78999999999887653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=97.29 Aligned_cols=148 Identities=20% Similarity=0.140 Sum_probs=85.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|...... ...+. .+.... ...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t--~~~~~~-------------~~~------------------ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV------TTIPT--IGFNVE-------------TVT------------------ 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC------CCCCC--SSEEEE-------------EEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC------CcCCc--CccceE-------------EEE------------------
Confidence 356899999999999999999853110 11111 111100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH---Hh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ---IA 186 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q---l~ 186 (257)
..+..+.++||||......... .....++.+++|+|+..... ..... +...... ..
T Consensus 48 ------~~~~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~ 108 (171)
T 1upt_A 48 ------YKNLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKSE-----LVAMLEEEELRK 108 (171)
T ss_dssp ------ETTEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHHH-----HHHHHTCGGGTT
T ss_pred ------ECCEEEEEEECCCChhhhHHHH--------HHhccCCEEEEEEECCCHHHHHHHHHH-----HHHHHhchhhCC
Confidence 1134578999999754322211 11235789999999986421 11110 1111111 24
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.|.++|+||+|+.+... ..++...+... ....+++ .|++++.++++++..+
T Consensus 109 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 109 AILVVFANKQDMEQAMT----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp CEEEEEEECTTSTTCCC----HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CEEEEEEECCCCcCCCC----HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 56789999999987643 34444444221 1223455 7899999999888765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.8e-12 Score=99.77 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++|+|.+|+|||||+++|+..... .....+.+.+.. .+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~---------------~~----------------- 62 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMR---------------KI----------------- 62 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEE---------------EE-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEE---------------EE-----------------
Confidence 346899999999999999999853110 000100111100 00
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~ 188 (257)
...+..+.|+||||.......... ....++.+++|+|+........... . +...... ...+
T Consensus 63 -----~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~-~--~~~~~~~~~~~~~p 126 (188)
T 1zd9_A 63 -----TKGNVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKIEASKN-E--LHNLLDKPQLQGIP 126 (188)
T ss_dssp -----EETTEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCC
T ss_pred -----EeCCEEEEEEECCCCHhHHHHHHH--------HHccCCEEEEEEECCCHHHHHHHHH-H--HHHHHhCcccCCCC
Confidence 022456789999996432222211 1234789999999976432111000 0 1111111 2456
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++|+||+|+.+..+ ..++...+... ....+++ +|++++.|+++++..+..
T Consensus 127 iilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 127 VLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEEECCCCccCCC----HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999987543 23343333221 1233455 789999999999877643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-12 Score=100.05 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.|+||||........... ...++.+++|+|+........ ....+..+ ..+.++|+|
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~vi~v~D~~~~~s~~~-------~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 74 VKAQIWDTAGLERYRAITSAY--------YRGAVGALLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEEEESCCCTTCTTHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCeEEEEEE
Confidence 457799999976543322211 234688999999987543211 11122222 346788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+..+. ..+....+.+.. ...++ .|++++.++++++..+
T Consensus 139 K~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 139 KSDLSQAREV--PTEEARMFAENN--GLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred CCCccccccc--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 9999865432 234455544443 34555 8999999999888765
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=96.47 Aligned_cols=147 Identities=19% Similarity=0.155 Sum_probs=82.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+. .+....... .+.... ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~----~~~~~~~~t----~~~~~~-------------~~~----------------- 58 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI----GEVVTTKPT----IGFNVE-------------TLS----------------- 58 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC----SEEEEECSS----TTCCEE-------------EEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhc----CCcCccCCc----CccceE-------------EEE-----------------
Confidence 345689999999999999999983 333211111 111100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------ 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------ 184 (257)
..+..+.++||||......... .....++.+++|+|+........ ....+.+
T Consensus 59 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~ 116 (183)
T 1moz_A 59 -------YKNLKLNVWDLGGQTSIRPYWR--------CYYADTAAVIFVVDSTDKDRMST-------ASKELHLMLQEEE 116 (183)
T ss_dssp -------ETTEEEEEEEEC----CCTTGG--------GTTTTEEEEEEEEETTCTTTHHH-------HHHHHHHHTTSST
T ss_pred -------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHcChh
Confidence 1134577999999754322211 12335789999999875422111 0111111
Q ss_pred -HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 185 -l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...|.++|+||+|+.+... ..++...+... ....+++ .|++++.|+++++..+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 117 LQDAALLVFANKQDQPGALS----ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp TSSCEEEEEEECTTSTTCCC----HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred hCCCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 2346789999999987533 34454444321 1223455 8999999999988765
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-13 Score=121.71 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=88.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+-++|+|..|+|||||+|+|+ +.+.+.....+|.+..... ...++.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~-------------~~~~~~-------------- 80 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVY-------------KSMELH-------------- 80 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSC----C-------------CCCCE-------------EEEEET--------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEE-------------EEEEEC--------------
Confidence 345679999999999999999998 4444455555554221110 011111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
....+.|+||||..+....... ..+........+|.+++|+|+...... .. +...+.+...+.
T Consensus 81 ---------~~~~l~liDTpG~~d~~~l~~~-~~~~~~~~l~~aD~vllVvD~~~~~~~-~~------~l~~l~~~~~pi 143 (423)
T 3qq5_A 81 ---------PIGPVTLVDTPGLDDVGELGRL-RVEKARRVFYRADCGILVTDSAPTPYE-DD------VVNLFKEMEIPF 143 (423)
T ss_dssp ---------TTEEEEEEECSSTTCCCTTCCC-CHHHHHHHHTSCSEEEEECSSSCCHHH-HH------HHHHHHHTTCCE
T ss_pred ---------CCCeEEEEECcCCCcccchhHH-HHHHHHHHHhcCCEEEEEEeCCChHHH-HH------HHHHHHhcCCCE
Confidence 1125789999998654322100 001111223458999999999332221 11 233445557788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
++|+||+|+.+.... +..+.+.+... .+++ +|++++.++++++..+...
T Consensus 144 IvV~NK~Dl~~~~~~-----~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 144 VVVVNKIDVLGEKAE-----ELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp EEECCCCTTTTCCCT-----HHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred EEEEeCcCCCCccHH-----HHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999887642 22222322222 3444 8999999999888876433
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=98.39 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... .....+.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~p~ilv~nK~D 132 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSS--------YYRGAHGIIVVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD 132 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHH--------HHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhhhhhHHH--------HHhhCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 45779999995433222221 12346899999999875432111 0 012222232 456789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... .........+..+ .+++ .|++++.++++++..+.
T Consensus 133 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 133 LTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHH
Confidence 9876543 2234444444433 3455 89999999998877653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-12 Score=97.79 Aligned_cols=106 Identities=19% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+........... . +....... ..|.++|+||+|
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLY--------IKNGQGFILVYSLVNQQSFQDIKP-M--RDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHH--------hccCCEEEEEEeCCCHHHHHHHHH-H--HHHHHHhcCCCCCCEEEEEECCc
Confidence 347799999977655544322 224588999999987543211100 0 11112221 357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++++.|+++++..+
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 120 LESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHHHHHH
T ss_pred ccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHHHHHH
Confidence 9765442 1233444444432 2344 8999999999888754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-11 Score=94.93 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=87.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ......+ .+.+ ......+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~------------~~~~~~~~--------------- 53 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDS------------YTKICSVD--------------- 53 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEE------------EEEEEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCce------------EEEEEEEC---------------
Confidence 456789999999999999999986310 0111111 1100 00011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .. +....... ..
T Consensus 54 -------~~~~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~ 115 (181)
T 2fn4_A 54 -------GIPARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNEVG-KL--FTQILRVKDRDDF 115 (181)
T ss_dssp -------TEEEEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHTSSCC
T ss_pred -------CEEEEEEEEECCCchhhHHHHHHH--------HhhCCEEEEEEeCCCHHHHHHHH-HH--HHHHHHhcCCCCC
Confidence 112457799999965433222211 12468899999998754321110 00 11111222 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+..+. ..+....+.... ...++ +|++++.|+++++..+.
T Consensus 116 piilv~nK~Dl~~~~~v--~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 116 PVVLVGNKADLESQRQV--PRSEASAFGASH--HVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp CEEEEEECGGGGGGCCS--CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEECccccccccc--CHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 67899999999875442 123333333332 34565 79999999999887663
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=95.22 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-H-hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I-AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l-~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........ .. .+...+.+ . ..|.++|+||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~piilv~nK~Dl 121 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITK--------AYYRGAQACVLVFSTTDRESFEA-IS---SWREKVVAEVGDIPTALVQNKIDL 121 (168)
T ss_dssp EEEEEECCTTGGGTTCCCH--------HHHTTCCEEEEEEETTCHHHHHT-HH---HHHHHHHHHHCSCCEEEEEECGGG
T ss_pred EEEEEEcCCCcHhHHHHHH--------HHhcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 4578999999543211111 11235789999999987543211 10 01111111 1 4578899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|++.+.++++++..+
T Consensus 122 ~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 122 LDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp GGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHHHH
T ss_pred Cccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHH
Confidence 865432 2344555555443 3555 7899999999887654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=94.45 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+........ .. .+...+.+. ..+.++|+||+|
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPS--------YIRDSTVAVVVYDITNTNSFHQ-TS---KWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHH--------HHHTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECCc
Confidence 35789999996543322211 1234789999999986433211 10 011122222 345688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. .........+..+ .+++ .|++.+.++++++..+.
T Consensus 131 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 131 LSDKRQV--STEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHH
T ss_pred ccccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9865442 2344444455443 3555 89999999999887664
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.4e-11 Score=93.51 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+ ...|.++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAF--------FRDAMGFLLLFDLTNEQSFLNVR----NWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHT--------TTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------HcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence 467899999986544433221 23578999999998754432210 01111222 234678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..+.+....+..+ .+++ .|++.+.++++++..+.
T Consensus 138 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 138 DLEDQRAV--KEEEARELAEKYG--IPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHcC--CCEEEEECCCCCCHHHHHHHHH
Confidence 99764432 2344555554443 2444 78999999998887653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=95.44 Aligned_cols=103 Identities=7% Similarity=-0.005 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.++||+|...+.. ...++.+++|+|+.......... .+...+..+ ..|.++|.|
T Consensus 54 ~~l~i~Dt~G~~~~~~-------------~~~~d~~ilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 54 HLVLIREEAGAPDAKF-------------SGWADAVIFVFSLEDENSFQAVS----RLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEECSSSCCHHH-------------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred EEEEEEECCCCchhHH-------------HHhCCEEEEEEECcCHHHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 3467899999765211 12368999999998654321110 011123333 246788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+..+..-..+....+.+... ..+++ .|++++.++++++..+
T Consensus 117 K~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 117 QDRISASSPRVVGDARARALXADMK-RCSYYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp CTTCBTTBCCCSCHHHHHHHHHHHS-SEEEEEEBTTTTBTHHHHHHHH
T ss_pred CccccccccCcCCHHHHHHHHHhhc-CCeEEEEeccccCCHHHHHHHH
Confidence 9999542222123455555555443 33555 8999999999988765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-11 Score=94.38 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=86.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|... .........|. ... ...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~----~~~~~~~t~g~----~~~-------------~~~----------------- 56 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE----DISHITPTQGF----NIK-------------SVQ----------------- 56 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS----CCEEEEEETTE----EEE-------------EEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC----CCCcccCcCCe----EEE-------------EEE-----------------
Confidence 3467899999999999999999842 22222222221 100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||........... ....+.+++|+|+........... . +...+.. -..
T Consensus 57 -------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 118 (181)
T 1fzq_A 57 -------SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQ-E--LTELLEEEKLSCV 118 (181)
T ss_dssp -------ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHH-H--HHHHTTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECcCHHHHHHHHH-H--HHHHHhChhhcCC
Confidence 113457799999976544332211 124789999999986432111000 0 1111111 235
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|.||+|+.+... .+++...+... ....+++ +|++++.|+++++..+.
T Consensus 119 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 119 PVLIFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp CEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEECcCcccCCC----HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 7788999999987643 34444433211 1223455 79999999999887663
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=97.36 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+. ..|.++|+||+|
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~NK~D 144 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSY--------FRKADGVLLLYDVTCEKSFLNIR----EWVDMIEDAAHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHC---CCEEEEEECGG
T ss_pred EEEEEEECCCCcchhhhHHHH--------HhhCCEEEEEEECCChHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence 457799999976654443221 23468999999998654322110 012222222 457889999999
Q ss_pred CCCc------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSP------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+. .+. ..+......+..+ ++++ +|++.+.|+++++..+
T Consensus 145 l~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 145 IRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp GHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHHHHHHH
Confidence 9731 111 1233344444432 3555 7899999999888765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-11 Score=93.79 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||.......... .....+.+++|+|+.......... .+...+.+. ..+.++|+||+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ilv~nK~ 136 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNSKSFADIN----LYREQIKRVKDSDDVPMVLVGNKC 136 (190)
T ss_dssp EEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHH--------hhCcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCeEEEEEECC
Confidence 45789999996543332221 123468899999998654321110 012222222 35778999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ..+.+.+..+..+ .+++ .|++++.++++++..+
T Consensus 137 Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 137 DLPTRTV---DTKQAHELAKSYG--IPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp TCSCCCS---CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHH
T ss_pred cCCcccC---CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHH
Confidence 9987432 2455555555544 2444 7899999999888765
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=97.38 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.|+||||........... ....+.+++|+|+........ .. .+...+.++ ..|.++|+||
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVFSVTSKQSLEE-LG---PIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHH--------HHHCSEEEEEEETTCHHHHHT-TH---HHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEeCCChHHhHHHHHHh--------hccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999976654443321 123689999999986443211 10 011222222 3477999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+...+. ..+......+..+ .+++ +|++++.|+++++..+.
T Consensus 124 ~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 124 CDETQREV---DTREAQAVAQEWK--CAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp TTCSSCSS---CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHH
T ss_pred ccCCcccc---CHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHH
Confidence 99986432 1344444444433 3455 79999999998887763
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=98.43 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~i~v~nK~ 119 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----HYREQIKRVKDSEDVPMVLVGNKC 119 (189)
T ss_dssp EEEEEEECCCC---CTTHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTCSCCCEEEEEECT
T ss_pred EEEEEEECCCcHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence 346689999965433322211 12368899999998654321110 011222221 34678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+.... .+......+..+ .+++ +|++++.|+++++..+.
T Consensus 120 Dl~~~~~~---~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 120 DLPSRTVD---TKQAQDLARSYG--IPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp TSSSCSSC---HHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cCcccccC---HHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 99865432 344444444443 2344 79999999999887653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=97.12 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ......+ .+.+ ......+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~------------~~~~~~~~--------------- 50 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENT------------FTKLITVN--------------- 50 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEE------------EEEEEEET---------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-cccc------------EEEEEEEC---------------
Confidence 456789999999999999999985210 0111111 1100 00111111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
.....+.++||||......... .....++.+++|+|+.......... .. +...... ...
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~ 112 (181)
T 3t5g_A 51 -------GQEYHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVIK-VI--HGKLLDMVGKVQI 112 (181)
T ss_dssp -------TEEEEEEEEECCCCCTTCCCCG--------GGTTTCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHC----C
T ss_pred -------CEEEEEEEEeCCCchhhhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCC
Confidence 1124567999999654321111 1123478999999998644321110 00 1111111 245
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
|.++|+||+|+....+. ..+......+..+ ++++ .|++++.++++++..+..
T Consensus 113 p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 113 PIMLVGNKKDLHMERVI--SYEEGKALAESWN--AAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp CEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEEECccchhccee--cHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHH
Confidence 77899999999765432 2345555555443 4555 789999999988877643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.6e-11 Score=95.14 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+...... .... .+...+.+. ..+.++|.||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~D~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSY--------YRSANGAILAYDITKRSSF-LSVP---HWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHH--------HTTCSEEEEEEETTBHHHH-HTHH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhHHHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECCc
Confidence 457899999976544433221 2246899999999865432 1110 011122221 246688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+++.+..+..+ ...++ +|++++.++++++..+.
T Consensus 146 l~~~~~v--~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 146 LSELREV--SLAEAQSLAEHYD-ILCAIETSAKDSSNVEEAFLRVA 188 (201)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 9864332 2455555555443 22555 78999999999887653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=102.17 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
....+.+.++++|.+|+|||||+|+|+.... .....++. +++... ......
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~-----~~~~~~~~--~~t~~~---------~~~~~~------------- 74 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV-----FHSGTAAK--SITKKC---------EKRSSS------------- 74 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC-----SCC---------CCSC---------EEEEEE-------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc-----CccCCCCC--ceeeeE---------EEEEEE-------------
Confidence 3445567899999999999999999995311 01111110 000000 000000
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+..+.|+||||+.+.. ...+.+. .........++.+++|+|+.++.......- ..+...+
T Consensus 75 -----------~~~~~i~liDTpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l--~~~~~~~ 140 (239)
T 3lxx_A 75 -----------WKETELVVVDTPGIFDTEVPNAETSKEII-RCILLTSPGPHALLLVVPLGRYTEEEHKAT--EKILKMF 140 (239)
T ss_dssp -----------ETTEEEEEEECCSCC-----CHHHHHHHH-HHHHHTTTCCSEEEEEEETTCCSSHHHHHH--HHHHHHH
T ss_pred -----------eCCceEEEEECCCccCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEeeCCCCCHHHHHHH--HHHHHHh
Confidence 123467899999987542 1111111 111112235799999999875433211100 0011111
Q ss_pred -HHHhhcCEEEEeCCCCCCcCCCcchH----HHHHHHHHHhCCCCEEEEeec-----CCcChhhhhcCc
Q 025133 183 -HQIAFADVVILNKVDLVSPERSGDSL----DELEKEIHEINSLAHVIRSVR-----CQVDLSEVLNCR 241 (257)
Q Consensus 183 -~ql~~~~vivlNK~D~~~~~~~~~~l----~~~~~~l~~~~~~a~i~~s~~-----~~~~~~~l~~~~ 241 (257)
.....+.++|+||+|+.........+ +.+...+++...... +.+.. ...++.+|+..+
T Consensus 141 ~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~ll~~i 208 (239)
T 3lxx_A 141 GERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC-ALNNKATGAEQEAQRAQLLGLI 208 (239)
T ss_dssp HHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE-ECCTTCCHHHHHHHHHHHHHHH
T ss_pred hhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE-EEECCCCccccHHHHHHHHHHH
Confidence 12334789999999998765432222 245566666654432 23222 124666666554
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=96.09 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLT----SWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEECCTTGGGTSCCCH--------HHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhhHH--------HHhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence 4578999999542211110 1123478999999998754321110 011222222 346688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ ..++ .|++++.++++++..+
T Consensus 138 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 138 LESRRDV--KREEGEAFAREHG--LIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHH
T ss_pred cCCcccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9765432 2344445444443 3555 8999999999988765
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=92.95 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=63.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhc-CEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA-DVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~-~vivlN 194 (257)
..+.++||||........... ...++.+++|+|+........ .. .+...+.+. ..+ .++|.|
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKY--------IYGAQGVLLVYDITNYQSFEN-LE---DWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHH--------HTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEEECCCCccccchhhHH--------HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhcccCCCCeEEEEEE
Confidence 457899999965443322211 234789999999987544211 10 011222221 234 477899
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+|+.+..+. ..+......+..+ .+++ .|++++.|+++++..+...
T Consensus 124 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 124 KIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999764332 1344444444443 3455 8999999999988776433
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=94.92 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.++||+|..... + ....+.+++|+|+........... +...+.+ ...+.++|.||+
T Consensus 67 ~~l~i~Dt~G~~~~~-~------------~~~~~~~i~v~d~~~~~s~~~~~~----~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-F------------AAWVDAVVFVFSLEDEISFQTVYN----YFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEEECSSSCCHH-H------------HHHCSEEEEEEETTCHHHHHHHHH----HHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEEECCCChhhh-e------------ecCCCEEEEEEECcCHHHHHHHHH----HHHHHHHhcCCCCCCEEEEEECc
Confidence 346689999986543 1 113689999999987543222100 1112222 234678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+..-..+....+.+..+ ...++ .|++++.++++++...
T Consensus 130 Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~gv~~lf~~l 174 (184)
T 3ihw_A 130 AISAANPRVIDDSRARKLSTDLK-RCTYYETCATYGLNVERVFQDV 174 (184)
T ss_dssp TCBTTBCCCSCHHHHHHHHHHTT-TCEEEEEBTTTTBTHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC-CCeEEEecCCCCCCHHHHHHHH
Confidence 99643332233455566555543 34555 8999999999988765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-11 Score=96.55 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=82.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. +.. ...+. .+... ....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~----~~~--~~~~t--~~~~~-------------~~~~----------------- 69 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG----EIV--TTIPT--IGFNV-------------ETVE----------------- 69 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS----CCE--EEEEE--TTEEE-------------EEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC----Ccc--ccCCc--CceeE-------------EEEE-----------------
Confidence 3456899999999999999999842 111 11111 11110 0000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||.......... ....++.+++|+|+........... . +...... -..
T Consensus 70 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~-~--l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 70 -------YKNICFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVQESAD-E--LQKMLQEDELRDA 131 (192)
T ss_dssp -------ETTEEEEEEECC-----CTTHHH--------HHHTCCEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHH-H--HHHHhcccccCCC
Confidence 12355789999997543222111 1235789999999986532111000 0 1111111 135
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... ..++...+... ....+++ .|++++.|+++++..+.
T Consensus 132 piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 132 VLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred eEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 6789999999977543 34444443321 1223455 78999999999887653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-11 Score=96.21 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=86.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+..-++|+|.+|+|||||+++|+..... .....+ .+.+ ......+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~------------~~~~~~~~-------------- 68 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENT------------YSKIVTLG-------------- 68 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEE------------EEEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceE------------EEEEEEEC--------------
Confidence 34456899999999999999999863110 000010 1000 00000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----H
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l 185 (257)
.....+.|+||||......... ......+.+++|+|+.......... .+...+.+ .
T Consensus 69 --------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~ 128 (201)
T 3oes_A 69 --------KDEFHLHLVDTAGQDEYSILPY--------SFIIGVHGYVLVYSVTSLHSFQVIE----SLYQKLHEGHGKT 128 (201)
T ss_dssp ----------CEEEEEEEECCCCTTCCCCG--------GGTTTCCEEEEEEETTCHHHHHHHH----HHHHHHHC-----
T ss_pred --------CEEEEEEEEECCCccchHHHHH--------HHHhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCC
Confidence 1235578999999654322111 1223578999999998654321110 01111111 1
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..|.++|+||+|+.+..+. .........+..+ ++++ +|++.+.++++++..+.
T Consensus 129 ~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREV--QAVEGKKLAESWG--ATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCcccccc--CHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 3477999999999865543 2233444444443 3565 78999999998887763
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=95.26 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=60.9
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HH---HhhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---l~~~~vivlNK~D~ 198 (257)
+.++||||.......... .....+.+++|+|+........ .. .+...+ .. ...|.++|+||+|+
T Consensus 68 l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQ--------YMRTGDGFLIVYSVTDKASFEH-VD---RFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEECCSCGGGCSSHHH--------HHHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEECCCchhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 557999996432222111 1234789999999987543211 10 011111 11 22467889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|++ ++.++++++..+
T Consensus 136 ~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 136 MHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp STTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHHH
T ss_pred hhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCCCHHHHHHHH
Confidence 874432 2345555555554 3455 8999 899999988654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=101.53 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 128 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKD--------VYYIGASGAILFFDVTSRITCQNLA----RWVKEFQAVVGNEAPIVVCANKID 128 (218)
T ss_dssp EEEEEEEECSGGGTSCCCH--------HHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCSSSCEEEEEECTT
T ss_pred EEEEEEecCCchhhchHHH--------HHhhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 4578999999543211111 1123478999999998765432211 011222222 357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+......+. ...+++ +|++++.|+++++..+.
T Consensus 129 l~~~~~~--~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 129 IKNRQKI--SKKLVMEVLKG--KNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp CC----C--CHHHHHHHTTT--CCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHH--cCCcEEEEecCCCCCHHHHHHHHH
Confidence 9875432 12223333222 234555 89999999998877653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=95.58 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CEEEEecCCCCCcH-------HHHHhccccccccc-ceeeeeEEEEEeccchHHHHhhhccC--CC----hhHHHHHHhh
Q 025133 122 DHILLETTGLANPA-------PLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDKYRHL--SS----YPEAIHQIAF 187 (257)
Q Consensus 122 ~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~-~~~~~~vi~vvDa~~~~~~~~~~~~~--~~----~~~~~~ql~~ 187 (257)
.+.++||||+.... .....+. ...+.. ...++.+++|+|+..+.......... .. +.........
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 47799999964321 1111110 112222 44567899999998765432221100 00 1111223356
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-CC----CEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN-SL----AHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-~~----a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.... .+......+..+ +. ..++ .|++++.|+++++..+.
T Consensus 124 piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV-----QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp CEEEEEECGGGCSCH-----HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred ceEEEeehHhccCcH-----HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 789999999998753 122333333333 21 1244 79999999999887654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-12 Score=100.18 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=65.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRP--------LSYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEEEEEECCCCHhHHHHHH--------HhccCCcEEEEEEECCChhhHHHHHH---HHHHHHHHhCCCCCEEEEeEcccc
Confidence 4567999999754322111 11235789999999987543222100 022233333 5678899999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCC
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
.+.... .-..+....+.+..+ ..+++ .|++++.|+++++..+.....
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcC-CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 764210 011233334444333 22555 799999999999887644433
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-12 Score=111.38 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+.+.+.|+++|+||+|||||+|+|++. + +.+.+.|++|...... ...
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~----~-~~v~~~pftT~~~~~g-------------~~~-------------- 115 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT----E-SEAAEYEFTTLVTVPG-------------VIR-------------- 115 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB----C-CCGGGTCSSCCCEEEE-------------EEE--------------
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC----C-CcccCCCCceeeeeeE-------------EEE--------------
Confidence 4456678999999999999999999953 3 3345556653321111 111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--- 184 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--- 184 (257)
..+..+.|+||||+.+.....+.+. ...+.....+|.+++|+|+.......+.. ...+..
T Consensus 116 ----------~~~~~i~l~D~pGl~~~a~~~~~~g-~~~l~~i~~ad~il~vvD~~~p~~~~~~i------~~EL~~~~~ 178 (376)
T 4a9a_A 116 ----------YKGAKIQMLDLPGIIDGAKDGRGRG-KQVIAVARTCNLLFIILDVNKPLHHKQII------EKELEGVGI 178 (376)
T ss_dssp ----------ETTEEEEEEECGGGCCC-----CHH-HHHHHHHHHCSEEEEEEETTSHHHHHHHH------HHHHHHTTE
T ss_pred ----------eCCcEEEEEeCCCccCCchhhhHHH-HHHHHHHHhcCccccccccCccHHHHHHH------HHHHHHhhH
Confidence 2345688999999876543332221 33455667899999999998765443321 111111
Q ss_pred --HhhcCEEEEeCCCCC
Q 025133 185 --IAFADVVILNKVDLV 199 (257)
Q Consensus 185 --l~~~~vivlNK~D~~ 199 (257)
.+.+-.+++||+|.-
T Consensus 179 ~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 179 RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EETCCCCCEEEEECSSS
T ss_pred hhccCChhhhhhHhhhh
Confidence 234678999999964
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=98.87 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.|+||||.......... ....++.+++|+|+........ +...+.++ ..+.++|+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPS--------YYRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHH--------HHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHH--------HhccCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCcEEEEE
Confidence 45789999996433222111 1234789999999987543211 11122222 23568899
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
||+|+..... ..+......+..+ ..++ +|++++.++++++..+..
T Consensus 129 nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 129 NKIDKENREV---DRNEGLKFARKHS--MLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp ECTTSSSCCS---CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ECCcCccccc---CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHH
Confidence 9999954332 2344555555433 4555 789999999888877643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=94.84 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=63.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~ 196 (257)
...+.|+||||........... ...++.+++|+|+...... .... .+...+.+. ..+.++|+||+
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAY--------YRGAMGFILMYDITNEESF-NAVQ---DWATQIKTYSWDNAQVILVGNKC 138 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHH--------HTTCCEEEEEEETTCHHHH-HTHH---HHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEEeCCChHHHHHHHHHH--------HccCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECC
Confidence 3457899999954333332211 2346899999999864332 1110 022222221 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... ..+......+..+ .+++ .|++++.++++++..+
T Consensus 139 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 139 DMEEERVV--PTEKGQLLAEQLG--FDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred CCcccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 99765432 2344444444443 3555 7999999999988765
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=115.60 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||........ ......+|.+++|+|+........ ...+..........++.+ .++|+||+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~--------~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNA--------IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp SCEEEEEECCSSSCHHHHH--------TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred CceEEEEECCCCcccHHHH--------HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4678999999986532222 223456899999999987521100 000000011222334434 67789999
Q ss_pred CCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhh
Q 025133 197 DLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 197 D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l 237 (257)
|+.+..+ ..+..+.+...++.+.- ..+++ +|++++.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9987322 11123344444444432 35666 799999998766
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-12 Score=101.30 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEEEECCCchhhHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 3466999999743322111 12335799999999987654322110 122333333 4678999999999
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+.. ...+......+..+ ..+++ +|++++.|+++++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcC-CcEEEEeeCCCCCCHHHHHHHH
Confidence 8653210 11233444444433 33455 7999999999988754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=92.97 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.+.||+|........... . ....+.+++|+|+........ +...+.++ ..|.++|.
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~----~---~~~~d~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDH----C---LQTGDAFLIVFSVTDRRSFSK-------VPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHH----H---HHHCSEEEEEEETTCHHHHHT-------HHHHHHHHHHHSTTSCCCEEEEE
T ss_pred EEEEEEecCCCccchhhhHHH----h---hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCCEEEEe
Confidence 456788999986543322111 1 124689999999986443211 11122222 34678899
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+.+..+. ..++...+.+..+ .+++ .|++.+.++++++..+.
T Consensus 138 nK~Dl~~~~~v--~~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 138 NKSDLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp ECTTCTTTCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHHH
T ss_pred echhccccCCc--CHHHHHHHHHHhC--CEEEEEcCCCCCCHHHHHHHHH
Confidence 99999865432 2344444444433 3555 89999999999887663
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=99.51 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=54.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------HhhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------l~~~~vivlN 194 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.. ...|.++|+|
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQIS--------QYWNGVYYAILVFDVSSMESFESCK----AWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp EEEEEEETTTTHHHHHHHS--------TTCCCCCEEEEEEETTCHHHHHHHH----HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHH--------HHHhhCcEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccccCCcEEEEEE
Confidence 4578999999854333221 1234578999999998754321110 01222222 1346789999
Q ss_pred CCCCCC-cCCCcchHHHHHHHHHHhCCCCEEE-EeecC-CcChhhhhcCc
Q 025133 195 KVDLVS-PERSGDSLDELEKEIHEINSLAHVI-RSVRC-QVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~-~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~-~~~~~~l~~~~ 241 (257)
|+|+.+ ..+. ..+....+.+..+ .+++ .|+++ +.++++++..+
T Consensus 141 K~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 141 KTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp CC-------CC--CHHHHHHHHHHTT--CEEEECCC-------CHHHHHH
T ss_pred CcccchhhccC--CHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHH
Confidence 999987 4332 2355556565544 4555 78999 99999888765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-11 Score=95.05 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........ ......++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D 124 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTIT--------SSYYRGSHGIIIVYDVTDQESFNGVK----MWLQEIDRYATSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEECCTTTTTTTCCC--------GGGGTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCChHHHHHHH--------HHhccCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 457899999965432211 11223568999999998754322110 011222222 245688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+.
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 125 LKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9875432 2344444444433 3455 79999999998887653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=95.60 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|.+|+|||||+++|...... ..+....++. ..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~--~~~---------------------------------- 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLS--AAD---------------------------------- 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCce--eee----------------------------------
Confidence 34568999999999999999999863211 1111122221 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-chHHHHhhhccCCChhHHHHHH---
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQI--- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~ql--- 185 (257)
.....+.++||||............ ......++.+++|+|+. .... +...... +.......
T Consensus 88 --------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~--~~~~~~~~~~~ 152 (193)
T 2ged_A 88 --------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKK-LTTTAEF--LVDILSITESS 152 (193)
T ss_dssp --------CCCTTCSEEEETTCCBSSCCHHHHH----HHHGGGEEEEEEEEETTCCHHH-HHHHHHH--HHHHHHHHHHH
T ss_pred --------ecCCeEEEEECCCCchHHHHHHHHH----HhhcccCCEEEEEEECCCCchh-HHHHHHH--HHHHHhhhhhc
Confidence 1235577999999754322211110 01123478999999998 3222 2211000 11122111
Q ss_pred ---hhcCEEEEeCCCCCCcCCCcchHHHHHHHH
Q 025133 186 ---AFADVVILNKVDLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 186 ---~~~~vivlNK~D~~~~~~~~~~l~~~~~~l 215 (257)
..|.++|+||+|+.+.....+..+.+.+.+
T Consensus 153 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 153 CENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp STTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 456789999999998765333333333333
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-12 Score=121.49 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+. ..........+|.+|+|+|+......... ..+.........+++.+ .++|+||+
T Consensus 254 ~~~i~iiDTPGh~~f--------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 254 KKIYEIGDAPGHRDF--------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp -----CCEEESSSEE--------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 456889999997632 12223445678999999999863200000 00000012233445555 56689999
Q ss_pred CCCCcCC--CcchHHHHHHHH-HHhCC---CCEEE-EeecCCcChh
Q 025133 197 DLVSPER--SGDSLDELEKEI-HEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 197 D~~~~~~--~~~~l~~~~~~l-~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
|+.+..+ .......+...+ +...- ..+++ +|++++.|+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9986321 111223333333 22221 23455 8999999887
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-11 Score=94.58 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 66 ~~~~i~D~~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRP--------LSYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCcchhHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999765432221 11235789999999987543211100 122233333 4577899999999
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+..+ ..-..++...+.+..+-..-+..|++++.|+++++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 86421 01123444555554432222347999999999988754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=92.29 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+........ .. .+...+.+ -..|.++|+||+|
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~piilv~nK~D 126 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITSRETYNA-LT---NWLTDARMLASQNIVIILCGNKKD 126 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TSTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHH--------HHhcCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECcc
Confidence 35779999997655443321 1235789999999987543211 10 01111222 2346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ...+.....+..+ .+++ .|++++.++++++..+.
T Consensus 127 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 127 LDADREV--TFLEASRFAQENE--LMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHH
Confidence 9764432 2344444444432 4555 78999999998887653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-11 Score=95.29 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||...... + .......++.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 74 ~~l~l~Dt~G~~~~~~----~----~~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~piilv~nK~D 141 (200)
T 2o52_A 74 VKLQIWDTAGQERFRS----V----TRSYYRGAAGALLVYDITSRETYNSL-A---AWLTDARTLASPNIVVILCGNKKD 141 (200)
T ss_dssp EEEEEECCTTHHHHSC----C----CHHHHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHTCTTCEEEEEEECGG
T ss_pred eEEEEEcCCCcHhHHH----H----HHHHhccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECCC
Confidence 4578999999421100 0 01112357899999999875432111 0 011112221 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ...+.....+..+ ..++ +|++++.|+++++..+.
T Consensus 142 l~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 142 LDPEREV--TFLEASRFAQENE--LMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 9764432 2344444444432 4555 89999999999887653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-12 Score=113.42 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
....|.++|+|.+|+|||||+|+|+..
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 456799999999999999999999853
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-11 Score=97.39 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSVDSPDSLENIPE---KWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTTGG--------GGCTTCCEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHHH--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchhh
Confidence 4578999999654332211 11235789999999986543211100 122233333 5678999999999
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..... -..+......+..+. ..++ .|++++.|+++++..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQA-YDYLECSAKTKEGVREVFETAT 195 (207)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHHH
T ss_pred hccccchhhhhhcccCCCCHHHHHHHHHhcCC-CEEEEeeCCCCCCHHHHHHHHH
Confidence 8652100 012223333333322 2455 79999999999887663
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-11 Score=111.68 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
.+..+.|+||||..+...... .....+|.+++|+|+........ ..............+..+ .++|+||
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~--------~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAI--------MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHH--------HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCceEEEEECCCcHHHHHHHH--------HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 356789999999865433221 12335799999999987521100 000000012223344433 6778999
Q ss_pred CCCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+..+ ..+..+.+...++.+.- ..+++ +|++++.|++++.
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 99987322 11123334444444332 34555 7999999987653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-12 Score=99.84 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HH---HhhcCEEEEeC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---l~~~~vivlNK 195 (257)
..+.|+||||..... ..... ....++.+++|+|+.......... .+...+ .. ...+.++|+||
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDMTNMASFHSLP----AWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHH--------HHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEEECCCchhhhhhhhHH--------HhcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999954221 11111 123578999999998754321110 011111 21 13467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC---cChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ---VDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~---~~~~~l~~~~~~ 243 (257)
+|+.+..+. ..+....+.+.. . ..++ .|++.+ .++.+++..+..
T Consensus 137 ~Dl~~~~~v--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 137 CDLRSAIQV--PTDLAQKFADTH-S-MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHT-T-CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred cccccccee--CHHHHHHHHHHc-C-CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 999765432 123344433333 2 3444 788888 899888876543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-11 Score=93.44 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFILAFSLISKASYENVSK---KWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp --CEEECCCC-CTTTTTGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCChhhhhhHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 4466999999654322211 11234789999999986543221100 122223332 4577899999999
Q ss_pred CCcCCC--------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS--------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~--------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. .-..++.....+..+ ..+++ .|++++.|+++++..+
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIG-APAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHH
Confidence 765320 001234444444443 22455 7999999999988765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=93.62 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........ . .....++.+++|+|+...... .... .+...+.+. ..|.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~-----~---~~~~~~d~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTIT-----T---AYYRGAMGIMLVYDITNEKSF-DNIR---NWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEC---------C-----C---TTTTTCSEEEEEEETTCHHHH-HHHH---HHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEcCCCChhhhhhH-----H---HHHhcCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 457899999965432221 1 122357899999999875432 1110 011222222 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ .|++++.++++++..+.
T Consensus 125 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 125 VNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHHHHHHHHH
T ss_pred CCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9865432 2344555555543 3555 78999999999887653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=92.84 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRP--------LCYTNTDIFLLCFSVVSPSSFQNVSE---KWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp EEEEEEECCCSTTCSSSGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSSCEEEEEECGGG
T ss_pred EEEEEEECCCCHHHHHHhH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence 3466999999754322211 11235789999999986544322100 122222222 4577889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.. ......+......+..+ ...++ .|++++.++++++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIK-AASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcC-CcEEEEEecCCCCCHHHHHHHH
Confidence 7631 11112344444444443 22455 7999999999988765
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=92.45 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=85.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|... +.. ...+. .+.... ...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~t--~~~~~~-------------~~~------------------ 62 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG----DVV--TTVPT--VGVNLE-------------TLQ------------------ 62 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS----CCE--EECSS--TTCCEE-------------EEE------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC----CCC--CcCCC--CceEEE-------------EEE------------------
Confidence 456899999999999999999742 111 11221 111100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH---Hh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ---IA 186 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q---l~ 186 (257)
..+..+.++||||........ . .....++.+++|+|+...... .... +...... -.
T Consensus 63 ------~~~~~~~~~Dt~G~~~~~~~~-----~---~~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~ 123 (189)
T 2x77_A 63 ------YKNISFEVWDLGGQTGVRPYW-----R---CYFSDTDAVIYVVDSTDRDRMGVAKHE-----LYALLDEDELRK 123 (189)
T ss_dssp ------ETTEEEEEEEECCSSSSCCCC-----S---SSSTTCCEEEEEEETTCCTTHHHHHHH-----HHHHHTCSTTTT
T ss_pred ------ECCEEEEEEECCCCHhHHHHH-----H---HHhhcCCEEEEEEeCCCHHHHHHHHHH-----HHHHHhhhhcCC
Confidence 123557899999975432211 1 122367999999999864211 1110 1111111 14
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.|.++|+||+|+.+... ..++...+... ....+++ .|++++.++++++..+.
T Consensus 124 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 124 SLLLIFANKQDLPDAAS----EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp CEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CeEEEEEECCCCcCCCC----HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 56789999999987643 34444443311 1222455 78999999999887654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=94.72 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||.......... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPL--------FYPDASVLLLCFDVTSPNSFDNIFN---RWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhhHHHHH--------HhccCCEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 35779999996543332211 1236789999999986543221100 122222222 3577889999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .-..++.....+..+ ...++ .|++++.++++++..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVG-AVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHH
Confidence 875311 011233344444433 22555 78999999999887653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=9.7e-12 Score=102.34 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=84.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++++.. ..........|. +.... ...+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~----~~~~~-----------~~~~~--------------- 60 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGV----EVHPL-----------VFHTN--------------- 60 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTE----EEEEE-----------EEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccce----eEEEE-----------EEEEC---------------
Confidence 3446899999999999999996631 111122233332 11000 00000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFA 188 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~ 188 (257)
.....+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+
T Consensus 61 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~p 121 (221)
T 3gj0_A 61 -------RGPIKFNVWDTAGQEKFGGLRD--------GYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCENIP 121 (221)
T ss_dssp -------TEEEEEEEEEECSGGGTSCCCH--------HHHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHSTTCC
T ss_pred -------CEEEEEEEEeCCChHHHhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCC
Confidence 1234578999999532211111 1122578999999998754432210 011112221 457
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|+||+|+.+.... .......+..+ ..++ +|++++.|+++++..+.
T Consensus 122 ~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 122 IVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp EEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBGGGTBTTTHHHHHHH
T ss_pred EEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 8899999999865432 12222233322 3455 79999999998877653
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.3e-11 Score=96.26 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=63.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEE
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVI 192 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~viv 192 (257)
...+.|+||||.......... ....++.+++|+|+........ +...+.+ -..+.++|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~iilV~D~~~~~s~~~-------~~~~l~~i~~~~~~~~~piilV 147 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTA--------FFRDAMGFLLMFDLTSQQSFLN-------VRNWMSQLQANAYCENPDIVLI 147 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHH--------HHTTCCEEEEEEETTCHHHHHH-------HHHHHHTCCCCCTTTCCEEEEE
T ss_pred eEEEEEEECCCcHhHHhHHHH--------HhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCCEEEE
Confidence 356889999995432222211 1235689999999986543211 1112222 23467889
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+.
T Consensus 148 ~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 148 GNKADLPDQREV--NERQARELADKYG--IPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp EECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEBTTTTBTHHHHHHHHH
T ss_pred EECCcccccccc--CHHHHHHHHHHCC--CcEEEEECCCCCCHHHHHHHHH
Confidence 999999765432 2344455454443 3444 89999999998887664
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=108.32 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=86.8
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+....++.+++.|.+|+|||||+++|+.. + ++-+.+. . .+
T Consensus 16 ~~~~~m~~i~iiG~~d~GKSTL~~~L~~~------g-iTi~~~~--------~-------------~~------------ 55 (370)
T 2elf_A 16 PRGSHMANVAIIGTEKSGRTSLAANLGKK------G-TSSDITM--------Y-------------NN------------ 55 (370)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHTTSEE------E-EESSSEE--------E-------------EE------------
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHhC------C-EEEEeeE--------E-------------EE------------
Confidence 34444558999999999999999999721 1 1111110 0 00
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+..+.|+||||..+...... .....+|.+++|+| .......... ......+++
T Consensus 56 ----------~~~~~~i~iiDtPGh~~f~~~~~--------~~~~~aD~ailVvd-~~g~~~qt~e-----~~~~~~~~~ 111 (370)
T 2elf_A 56 ----------DKEGRNMVFVDAHSYPKTLKSLI--------TALNISDIAVLCIP-PQGLDAHTGE-----CIIALDLLG 111 (370)
T ss_dssp ----------CSSSSEEEEEECTTTTTCHHHHH--------HHHHTCSEEEEEEC-TTCCCHHHHH-----HHHHHHHTT
T ss_pred ----------ecCCeEEEEEECCChHHHHHHHH--------HHHHHCCEEEEEEc-CCCCcHHHHH-----HHHHHHHcC
Confidence 02235588999999876532221 12245799999999 5432211110 122344556
Q ss_pred hcC-EEEEe-CCCCCCcCCCcchHHHHHHHHHHhC-CCCEEE---EeecC---CcChhhhhcCcc
Q 025133 187 FAD-VVILN-KVDLVSPERSGDSLDELEKEIHEIN-SLAHVI---RSVRC---QVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~-vivlN-K~D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~---~s~~~---~~~~~~l~~~~~ 242 (257)
.+. ++++| |+|+ +++...+..+++...++... ...+++ .|+++ +.|+++|++.+.
T Consensus 112 i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 112 FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 677 88999 9999 54321112244444444332 234554 68888 999988887653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-11 Score=97.78 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~vilV~D~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITS--------AYYRGAVGALIVYDISKSSSYENCN----HWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEECCTTTTTTTCCCG--------GGTTTCCEEEEEEC-CCHHHHHHHH----HHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEECCCccchhhhHH--------HHhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 4578999999654322111 1123578899999998754322110 012222222 456788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+
T Consensus 130 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 130 LAHLRAV--PTEESKTFAQENQ--LLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEECCCC-CCCHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9865432 2344445444433 4555 7899999999888665
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=118.18 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCCC------cH---HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 120 RLDHILLETTGLAN------PA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 120 ~~~~ilIDt~G~~~------~~---~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
.++++||||||+.. |. .....+. ...+. ...|.+++|+|+.......+.. .+...+.....+.+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv-~~yi~--~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvI 221 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTI 221 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH-HHHHT--STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHH-HHHHh--cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEE
Confidence 45799999999876 32 1121111 12222 4578999999998643322210 01222233346889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHh----CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEI----NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~----~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+||+|+++.... ...+.. .+. .++++++ +|+..+.++++|++.+.
T Consensus 222 lVlNKiDlv~~~~~---~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 222 GVITKLDLMDEGTD---ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp EEEECTTSSCTTCC---SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred EEEeCcccCCcchh---hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 99999999976542 111111 111 1334454 79999999988887764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=7.3e-11 Score=95.70 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... ......+.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCchhHHHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEecHHh
Confidence 4578999999643221111 11235789999999986543221100 123333333 5678999999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... .-..++.....+..+ ...++ .|++++.|+++++..+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRIS-AFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCC-CcEEEEeeCCCCCCHHHHHHHH
Confidence 875210 011233334444433 22455 7999999999988654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-11 Score=110.07 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+..... ......+|.+++|+|+...... +....+.........+++.+ .++++||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNM--------ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHH--------HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHH--------HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 4568999999965433222 1234468999999999875422 00000000012223444555 57789999
Q ss_pred CCCCc--CCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSP--ERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~--~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+. +......+++...++...- ..+++ .|++++.++.++..
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 99842 2111233455555555542 24555 79999999876654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=105.74 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=82.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+..+++|+|++|+||||++++|+.. ..|++++++..|+......+.........++.+ .....+ .-..++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~~~----~dp~~i 171 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSYTE----MDPVII 171 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECCCC----SCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---EccCCC----CCHHHH
Confidence 45668999999999999999999853 348899999998754111110000000000100 000000 001111
Q ss_pred -HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 108 -VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 108 -~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
...+..+ ...+++++||||||.... ..+.+.+. . .......+.+++|+|+........ ....+...
T Consensus 172 ~~~al~~~--~~~~~DvvIIDTpG~~~~~~~l~~el~--~-~~~~i~pd~vllVvDa~~g~~~~~-------~a~~~~~~ 239 (504)
T 2j37_W 172 ASEGVEKF--KNENFEIIIVDTSGRHKQEDSLFEEML--Q-VANAIQPDNIVYVMDASIGQACEA-------QAKAFKDK 239 (504)
T ss_dssp HHHHHHHH--HHTTCCEEEEEECCCCTTCHHHHHHHH--H-HHHHHCCSEEEEEEETTCCTTHHH-------HHHHHHHH
T ss_pred HHHHHHHH--HHCCCcEEEEeCCCCcccchhHHHHHH--H-HHhhhcCceEEEEEeccccccHHH-------HHHHHHhh
Confidence 1223322 136799999999997754 23332221 1 111235788999999987543221 11222221
Q ss_pred hhc-CEEEEeCCCCCCcC
Q 025133 186 AFA-DVVILNKVDLVSPE 202 (257)
Q Consensus 186 ~~~-~vivlNK~D~~~~~ 202 (257)
.+ ..+|+||+|.....
T Consensus 240 -~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 240 -VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp -HCCCCEEEECTTSCCCC
T ss_pred -cCceEEEEeCCccccch
Confidence 45 68999999988543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=94.18 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=87.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|+.... ....+.+.+.+.. .....+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-------~~~~~~t~~~~~~-----------~~~~~~~---------------- 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-------PPGQGATIGVDFM-----------IKTVEIN---------------- 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-------CTTCCCCCSEEEE-----------EEEEEET----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-------CCCCCCccceeEE-----------EEEEEEC----------------
Confidence 34689999999999999999985311 0111111111100 0001110
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~ 188 (257)
.....+.|+||||.......... ....++.+++|+|+........ .. .+...+.+. ..+
T Consensus 72 ------~~~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~-~~---~~~~~i~~~~~~~~p 133 (201)
T 2ew1_A 72 ------GEKVKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRC-LP---EWLREIEQYASNKVI 133 (201)
T ss_dssp ------TEEEEEEEEEECCSGGGHHHHGG--------GSTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCE
T ss_pred ------CEEEEEEEEECCCcHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCC
Confidence 11245789999997544333321 1235789999999986543211 10 012222222 345
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|.||+|+.+..+. ..+......+..+ .+++ +|++++.|+++++..+.
T Consensus 134 iilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 134 TVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 6889999999865432 1233444444333 3444 79999999999887653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-11 Score=103.59 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=82.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++|+|.+|+|||||+++|+.. ++ ....+ +.+.+...+ .
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~----~~--~~~~p--T~~~~~~~~-------------~------------------- 205 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG----EI--VTTIP--TIGFNVETV-------------E------------------- 205 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS----CC--EEEEE--ETTEEEEEE-------------E-------------------
T ss_pred ceEEEECCCCccHHHHHHHHhCC----CC--CCccc--ccceEEEEE-------------e-------------------
Confidence 36899999999999999999852 11 11111 111111000 0
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHHH---hh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~ql---~~ 187 (257)
..+..+.|+||||......+... .....+.+++|+|+..... ..... +...+... ..
T Consensus 206 -----~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~vilV~D~~~~~s~~~~~~~-----~~~~~~~~~~~~~ 267 (329)
T 3o47_A 206 -----YKNISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVNEAREE-----LMRMLAEDELRDA 267 (329)
T ss_dssp -----ETTEEEEEEECC-----CCSHHH--------HHTTEEEEEEEEETTCSSSHHHHHHH-----HHHHHTCGGGTTC
T ss_pred -----cCcEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCchHHHHHHHHH-----HHHHHhhhccCCC
Confidence 12356789999994332211111 1234789999999964321 11110 11111111 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... .+++...+.... ...+++ +|++++.|+++++..+.
T Consensus 268 piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 268 VLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred eEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 6788999999987654 355555443321 223455 79999999999987653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=93.39 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++|+|.+|+|||||+++|+..... ....+. .+.+.. .....+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~--~~~~~~-----------~~~~~~~--------------- 65 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-----PSFITT--IGIDFK-----------IKTVDIN--------------- 65 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-----CSSSCC--CSCCEE-----------EEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-----cccCCc--ccceEE-----------EEEEEEC---------------
Confidence 3457899999999999999999853110 001111 111100 0011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
.....+.|+||||........ ......++.+++|+|+...... .... .+...+.+. ..
T Consensus 66 -------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~ 126 (213)
T 3cph_A 66 -------GKKVKLQLWDTAGQERFRTIT--------TAYYRGAMGIILVYDVTDERTF-TNIK---QWFKTVNEHANDEA 126 (213)
T ss_dssp -------TEEEEEEEECCTTGGGGTCCC--------HHHHTTCSEEEEEEETTCHHHH-HTHH---HHHHHHHHHTTTCS
T ss_pred -------CEEEEEEEEeCCCcHHHHHHH--------HHHhccCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCC
Confidence 112457899999954321111 1112357899999999865432 1110 012222222 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+..... ..+......+..+ .+++ +|++.+.++++++..+.
T Consensus 127 piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 127 QLLLVGNKSDMETRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEEEEEECTTCSSCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSSHHHHHHHH
T ss_pred CEEEEEECCCCccccc---CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 6789999999954322 2344444444443 2444 79999999998887653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-11 Score=108.41 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ......+++.+ .++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~--------~~~~~aD~~ilVvDa~~g~~~qt~~-----~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMA--------TGASTCDLAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHH--------HHHTTCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEEcCcC
Confidence 45688999999654332221 1234579999999998753221110 12233444544 5778999999
Q ss_pred CCcCC--CcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhc
Q 025133 199 VSPER--SGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 199 ~~~~~--~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~ 239 (257)
.+.++ .....+++..+++.++ +..+++ +|++++.|+++++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 87421 1112344555555554 224555 78999998877543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-11 Score=103.97 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=82.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+++|+... .......++.+.+.+.. ...+
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~----~~~~~~~~~~Ti~~~~~-------------~~~~------------------- 48 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNY----SAFDTRRLGATIDVEHS-------------HLRF------------------- 48 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCC----CTGGGGGCCCCCSEEEE-------------EEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCccccCcCCccceEEE-------------EEEe-------------------
Confidence 47899999999999999998531 11122233432222211 0111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhc
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA 188 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~ 188 (257)
.++..+.++||||.... .+..............+.+++|+|+.......+.. .+...+.++ ..|
T Consensus 49 ----~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~----~~~~~l~~l~~~~~~~p 117 (307)
T 3r7w_A 49 ----LGNMTLNLWDCGGQDVF---MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE----IFAKALKQLRKYSPDAK 117 (307)
T ss_dssp ----TTTEEEEEEEECCSHHH---HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHH----HHHHHHHHHHHHCTTCE
T ss_pred ----CCceEEEEEECCCcHHH---hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHH----HHHHHHHHHHHhCCCCe
Confidence 12345789999996432 11000000001123578999999998653221110 011222232 457
Q ss_pred CEEEEeCCCCCCcCCCc----chHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcC
Q 025133 189 DVVILNKVDLVSPERSG----DSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~----~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
.++|+||+|+.+.++.. ...+.+.+..+..+ |..+++ .|++. .++.+.+..
T Consensus 118 iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~ 174 (307)
T 3r7w_A 118 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQ 174 (307)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHH
T ss_pred EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHH
Confidence 88899999998743321 11234444444433 235666 56666 555554443
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=103.78 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhh-cCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAF-ADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~ 196 (257)
..+.|+||||.. .+... .......+|.+++|+|+.... +.... ...+..++. +.++++||+
T Consensus 81 ~~i~iiDtPGh~---~f~~~-----~~~~~~~~D~~ilVvda~~g~~~~qt~e~-------l~~~~~l~~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHE---TLMAT-----MLSGASLMDGAILVIAANEPCPQPQTKEH-------LMALEILGIDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHH---HHHHH-----HHTTCSCCSEEEEEEETTSCSSCHHHHHH-------HHHHHHTTCCCEEEEEECT
T ss_pred cEEEEEECCCHH---HHHHH-----HHHhHhhCCEEEEEEECCCCCCCchhHHH-------HHHHHHcCCCeEEEEEEcc
Confidence 458899999943 22221 123345689999999998532 11111 122334443 467899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+.++.....+++.+.++... ...+++ .|++++.++++|++.+.
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 146 DLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp TSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99986654345667777766532 234555 79999999999888764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-11 Score=110.05 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=89.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+.++++|++|||||||++.|....+ .+...+.++...... ...+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p~~G-------------~V~~------------------ 201 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSPNLG-------------VVEV------------------ 201 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCCEEE-------------EEEC------------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecceee-------------EEEe------------------
Confidence 3589999999999999999985422 223333221111000 0010
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-chHHHHhhhccCCChhHHH--HHHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI--HQIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~--~ql~~~~ 189 (257)
.....+.+.||||+.+.......+. ...+.+..+++.+++++|.. .....+.... .....+ .....|.
T Consensus 202 -----~~~~~~~l~DtpGli~~a~~~~~L~-~~fl~~~era~~lL~vvDls~~~~~~ls~g~---~el~~la~aL~~~P~ 272 (416)
T 1udx_A 202 -----SEEERFTLADIPGIIEGASEGKGLG-LEFLRHIARTRVLLYVLDAADEPLKTLETLR---KEVGAYDPALLRRPS 272 (416)
T ss_dssp -----SSSCEEEEEECCCCCCCGGGSCCSC-HHHHHHHTSSSEEEEEEETTSCHHHHHHHHH---HHHHHHCHHHHHSCE
T ss_pred -----cCcceEEEEeccccccchhhhhhhh-HHHHHHHHHHHhhhEEeCCccCCHHHHHHHH---HHHHHHhHHhhcCCE
Confidence 1124578999999865321110010 01122344678999999996 2222211110 000111 1235789
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+... + .+..+.+.++..+ ..-+++|+.++.++++++..+.
T Consensus 273 ILVlNKlDl~~~-~---~~~~l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 273 LVALNKVDLLEE-E---AVKALADALAREG-LAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEEEECCTTSCH-H---HHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECCChhhH-H---HHHHHHHHHHhcC-CeEEEEECCCccCHHHHHHHHH
Confidence 999999999875 2 3455555554322 2335589999999998887763
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-11 Score=107.50 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||..+ +... .+.....+|.+++|+|+.... ...... ....+..++. +.++++||+|+
T Consensus 83 ~~i~iiDtPGh~~---f~~~-----~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEA---LMTT-----MLAGASLMDGAILVIAANEPCPRPQTRE-----HLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHH---HHHH-----HHHCGGGCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHH---HHHH-----HHhhhhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEECccC
Confidence 4588999999532 2221 122344679999999998642 111110 1123344454 45678999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++....++++.++++.. ....+++ .|++++.++++|++.+.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 98643222345555555432 1234555 79999999999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-11 Score=96.12 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||... ....... ....+.+++|+|+........ .. .+...+.+ ...|.++|+||+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~--------~~~~d~iilv~D~~~~~s~~~-~~---~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGH--------MRWGEGFVLVYDITDRGSFEE-VL---PLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHH--------HHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEECCCCCc-ccchhhh--------hccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhhCCCCCcEEEEEECc
Confidence 4577999999876 2222211 224689999999986543211 10 01112222 134678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
|+.+..+. ..+......+..+ .+++ .|++.+. ++++++..+
T Consensus 143 Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 143 DLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCcCHHHHHHHH
Confidence 99875332 2344444444443 4555 7899999 999988765
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=99.24 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++||||||++.+|... ..|+++.++..|... .+....+... ...++.+ .... ...+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r-~~a~eqL~~~~~~~gv~~---~~~~-------~~~dp 164 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-PAAYDQLLQLGNQIGVQV---YGEP-------NNQNP 164 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC-HHHHHHHHHHHHTTTCCE---ECCT-------TCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc-hhHHHHHHHHHHhcCCce---eecc-------ccCCH
Confidence 4568999999999999999999753 458899999988654 2111111100 0011100 0000 01111
Q ss_pred HHHHHHHHHh--cCCCCEEEEecCCCCC---cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 VQALEQLVQR--KERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~~~l~~~~~~--~~~~~~ilIDt~G~~~---~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
.......+.. ..++|++||||||... ...+...+. .+......+.+++|+|+........ ....+
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~---~i~~~~~pd~vlLVlDa~~gq~a~~-------~a~~f 234 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK---EMYDVLKPDDVILVIDASIGQKAYD-------LASRF 234 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGGHH-------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH---HHHHhhCCcceEEEEeCccchHHHH-------HHHHH
Confidence 1111112211 3479999999999533 222332221 1122234578999999987643322 12233
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
...-....+|+||+|....
T Consensus 235 ~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 235 HQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp HHHCSSEEEEEECGGGCSC
T ss_pred hcccCCcEEEEeccccccc
Confidence 3333567899999998754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=105.71 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=34.5
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++++.+.|+.+..+.+..+.+ +|+|++|+|||||+|.|+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTT
T ss_pred cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhC
Confidence 588999999999888888777776 9999999999999999985
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-11 Score=117.75 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=42.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
.++.||||||+........ ........+|.+++|+|+.......+... +...+.....+.++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~-----~~~~~i~~aD~vL~Vvda~~~~s~~e~~~----l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNE-----LSLGYVNNCHAILFVMRASQPCTLGERRY----LENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHH-----HHTHHHHSSSEEEEEEETTSTTCHHHHHH----HHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHH-----HHHHHHHhCCEEEEEEeCCCccchhHHHH----HHHHHHhhCCCEEEEEECccccc
Confidence 4689999999765332111 11122345799999999976433211100 11111222456789999999976
Q ss_pred c
Q 025133 201 P 201 (257)
Q Consensus 201 ~ 201 (257)
.
T Consensus 245 ~ 245 (695)
T 2j69_A 245 E 245 (695)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=93.02 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=67.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+-++++|++|+|||||+++|+...... .+....++. ..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~~--~~~---------------------------------- 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLS--AAD---------------------------------- 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCEE--ETT----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCceE--EEE----------------------------------
Confidence 456789999999999999999998632110 000111110 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-ch--HHHHhhhccCCChhHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NL--LFQIDKYRHLSSYPEAIHQ-- 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~--~~~~~~~~~~~~~~~~~~q-- 184 (257)
.....+.++||||..........+.. .....++.+++|+|+. .. ....... +...+..
T Consensus 52 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~----~~~~~~~~~i~v~D~~~~~~~~~~~~~~-----~~~~~~~~~ 114 (218)
T 1nrj_B 52 --------YDGSGVTLVDFPGHVKLRYKLSDYLK----TRAKFVKGLIFMVDSTVDPKKLTTTAEF-----LVDILSITE 114 (218)
T ss_dssp --------GGGSSCEEEECCCCGGGTHHHHHHHH----HHGGGEEEEEEEEETTSCTTCCHHHHHH-----HHHHHHHHH
T ss_pred --------eeCceEEEEECCCcHHHHHHHHHHHH----hccccCCEEEEEEECCCChHHHHHHHHH-----HHHHHhccc
Confidence 02356889999998655443322210 1112368899999998 21 1111110 1122221
Q ss_pred ----HhhcCEEEEeCCCCCCcCC
Q 025133 185 ----IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 ----l~~~~vivlNK~D~~~~~~ 203 (257)
-..|.++|+||+|+.+...
T Consensus 115 ~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 115 SSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccccCCCCEEEEEEchHhcccCC
Confidence 1356788999999988755
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=103.25 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=64.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
.+..+.|+||||..+...... .....+|.+++|+|+........ ...+.........+++.+ .++++||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~--------~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMI--------TGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHH--------HTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHHH--------hhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 356799999999876543322 12346799999999987421100 000000011222344544 6788999
Q ss_pred CCCCCcCC----CcchHHHHHHHHHHhC--C-CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER----SGDSLDELEKEIHEIN--S-LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~----~~~~l~~~~~~l~~~~--~-~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+... .....+++...++... + ..+++ +|++++.++.++.
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 99987321 1123455666666544 2 24565 7899988887543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=90.39 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.|+||+|......+.. . ....+.+++|+|......... .. .+...+.+. ..+.++|.|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~------~---~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNCER------Y---LNWAHAFLVVYSVDSRQSFDS-SS---SYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEECCC---CCCTHH------H---HTTCSEEEEEEETTCHHHHHH-HH---HHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEECCCCCcchhHHH------H---HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhhccCCCCCEEEEEE
Confidence 4567999999654322211 1 123688999999986433211 10 011222221 456788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Eee-cCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSV-RCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~-~~~~~~~~l~~~~ 241 (257)
|+|+.+..+. ..++..++.+..+ ..++ +|+ +++.++++++..+
T Consensus 136 K~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 136 KLDMAQYRQV--TKAEGVALAGRFG--CLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT--CEEEECCSSSCSHHHHHHHHHH
T ss_pred CcchhhcCcc--CHHHHHHHHHHcC--CcEEEEeecCccccHHHHHHHH
Confidence 9999764432 2344555555554 3566 678 7888999888654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-12 Score=116.88 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=86.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.|.+++.|.+|+|||||+++|.... +. ....+|.+..+.... ..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~----~~-~~~~~giT~~i~~~~-------------v~~---------------- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ----VA-AMEAGGITQHIGAFL-------------VSL---------------- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH----HH-HSSSCCBCCCTTSCC-------------BCS----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----cc-cccCCceeEEEeEEE-------------EEe----------------
Confidence 46889999999999999999998421 00 001122111110000 000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.|+||||....... ........|.+++|+|+.......... ..........|.+
T Consensus 49 -------~~g~~i~~iDTPGhe~f~~~--------~~~~~~~aD~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiI 108 (537)
T 3izy_P 49 -------PSGEKITFLDTPGHAAFSAM--------RARGTQVTDIVILVVAADDGVMKQTVE-----SIQHAKDAHVPIV 108 (537)
T ss_dssp -------SCSSCCBCEECSSSCCTTTS--------BBSSSBSBSSCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEE
T ss_pred -------CCCCEEEEEECCChHHHHHH--------HHHHHccCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEE
Confidence 11235779999995432211 112345589999999998744332211 1222334456788
Q ss_pred EEEeCCCCCCcCC--CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPER--SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~--~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+++||+|+.+... ....+..............+++ +|++++.|+++++..+
T Consensus 109 VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 109 LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 8999999975432 1111111110011111233555 7999999999988765
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=94.95 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......+... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLK---KWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeCHHh
Confidence 45779999997544322211 1235789999999986543222100 122233332 4577899999998
Q ss_pred CCcCCC------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..+. .-..+......+..+- .+++ .|++++.|+++++..+.
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTCTTHHHHHHHHH
T ss_pred hhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCCCCHHHHHHHHH
Confidence 764310 0013444444444432 2455 79999999998887663
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-10 Score=106.51 Aligned_cols=70 Identities=20% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... +.........|.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~allVvDa~~g~~~~t~~-----~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTY--------RTLTAVDSALMVIDAAKGVEPRTIK-----LMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHH--------HGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEeCCCCc
Confidence 46688999999876443322 1233579999999998754332211 1223344456889999999997
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
...
T Consensus 148 ~~~ 150 (528)
T 3tr5_A 148 TRP 150 (528)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-11 Score=108.19 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.+...+ .++++||+|+
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~--------~~~~~aD~~ilVvda~~g~~~qt~~-----~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMI--------TGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHH--------HHHTTCSSEEEEEETTTCCCHHHHH-----HHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHHH--------HHHHHCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEECccc
Confidence 46789999999765432221 1233579999999998653221110 22334455667 4678999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCCcC
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQVD 233 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~ 233 (257)
.+..+. ....+++...++.... ..+++ .|++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 141 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 853211 1122345566665542 24555 78888765
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=94.96 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
....++++|.+|+|||||+|+|+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999995
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-11 Score=106.05 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-+.+.++...++.+....+..+. ++|+|.+|+|||||+|.|+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTT
T ss_pred eEEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhC
Confidence 36778888888776654444433 58899999999999999874
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-11 Score=99.42 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||.......... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 44669999996543322211 1345789999999876432211100 112222222 5678999999999
Q ss_pred CCcCCCcc----------hHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGD----------SLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~----------~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+...... ..+......+..+ ..+++ +|++++.|+++++..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 86432100 1112222222221 11344 79999999999887763
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=103.59 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=82.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccch--
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKH-- 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~-- 105 (257)
...+++|+|++|+||||++++|... ..|++++++..|+......+ .+-.. ...++.+ .... + +.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~-qL~~~~~~~gv~v---~~~~-~----~~~dp~ 168 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE-QLKQLAEKIHVPI---YGDE-T----RTKSPV 168 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGG-SSHHHHHHSSCCE---ECCS-S----SCCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHH-HHHHhhhccCcce---EecC-C----CCCCHH
Confidence 3458999999999999999999763 34789999999876411111 11000 0000100 0000 0 1111
Q ss_pred hH-HHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 106 SL-VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 106 ~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
.+ ...+. ...+++++||||||..... .+...+. .+......+.+++|+|+........ ...
T Consensus 169 ~i~~~~l~----~~~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~~----------~~~ 231 (432)
T 2v3c_C 169 DIVKEGME----KFKKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAGI----------QAK 231 (432)
T ss_dssp TTHHHHHH----TTSSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHHH----------HHH
T ss_pred HHHHHHHH----HhhCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHHH----------HHH
Confidence 11 22222 2367899999999977543 2333221 1233446889999999987643211 222
Q ss_pred HHh--h-c-CEEEEeCCCCCCc
Q 025133 184 QIA--F-A-DVVILNKVDLVSP 201 (257)
Q Consensus 184 ql~--~-~-~vivlNK~D~~~~ 201 (257)
.+. . + ..+|+||+|....
T Consensus 232 ~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 232 AFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HHHTTSCSCEEEEEECSSSCST
T ss_pred HHhhcccCCeEEEEeCCCCccc
Confidence 232 2 4 6889999998643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=90.44 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... ......+.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEECCCChhhhhhHH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEEcchh
Confidence 4578999999643322111 11235789999999986543221100 122222222 3567889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+.. ...-..++...+.+..+ ..+++ .|++ ++.++++++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHH
Confidence 7531 01112344555555544 23555 6887 578899887654
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=105.83 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=60.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D 197 (257)
...+.++||||..........+ ....+.+++|+|++..... .. +...+.+.. .|.++|.||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~--------l~~~d~ii~V~D~s~~~~~-~~------~~~~l~~~~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFF--------MTRSSVYMLLLDSRTDSNK-HY------WLRHIEKYGGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHH--------HHSSEEEEEEECGGGGGGH-HH------HHHHHHHHSSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHH--------ccCCcEEEEEEeCCCchhH-HH------HHHHHHHhCCCCCEEEEEECCC
Confidence 4678999999954322211111 1237899999999875221 11 222233332 57899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..+. ..+.++......+ .+++ +|++++.|+++++..+..
T Consensus 162 l~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 162 ENPSYNI--EQKKINERFPAIE--NRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TCTTCCC--CHHHHHHHCGGGT--TCEEECCC-----CTTHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhcC--CceEEEecCcccCHHHHHHHHHH
Confidence 9875442 2345555554443 2344 899999999988877643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=89.59 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..++++||+|......... ..+ ....+.+++|+|......... .. .+...+.+. ..|.++|.||+
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~-----~~~--~~~a~~~ilVydvt~~~sf~~-~~---~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLH-----DHC--MQVGDAYLIVYSITDRASFEK-AS---ELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEECCTTTTHHHHHHH-----HCC--CCCCSEEEEEEETTCHHHHHH-HH---HHHHHHHTSGGGTTSCEEEEEECT
T ss_pred eEEEEeecCCCcchhhhHH-----HHH--HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhCCCCCcEEEEEECh
Confidence 3467899999754222221 111 123567788888765332111 00 011112211 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+. ..++...+....+ ++++ +|++++.++++++..+.
T Consensus 156 DL~~~r~v--~~~e~~~~a~~~~--~~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 156 DLVRCREV--SVSEGRACAVVFD--CKFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHH
T ss_pred HHhcCceE--eHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 99764332 1223233223332 3555 79999999999987653
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-10 Score=105.59 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+.... .......+|.+++|+|+...... +....+.........+++.+ .++++||+
T Consensus 120 ~~~~~iiDtPGh~~f~~~--------~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTN--------MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred CeEEEEEECCCcHHHHHH--------HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 456889999996543221 12234568999999999876421 00000000011223445556 57789999
Q ss_pred CCCCcC----CCcchHHHHHHHHHHh-CC----CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSPE----RSGDSLDELEKEIHEI-NS----LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~~----~~~~~l~~~~~~l~~~-~~----~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+.+ ......+++...++.. .- ..+++ .|++++.++.+++.
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 996532 1112334566666654 21 34555 79999999988764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=92.43 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||+|......+.. . ....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRP-----L---CYSDSDAVLLCFDISRPETVDSALK---KWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEEEEECCSGGGTTTGG-----G---GCTTCSEEEEEEETTCTHHHHHHHT---HHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCCHhHHHHHH-----H---HcCCCeEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999643322211 1 1234789999999987544322110 122223332 4567889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCcc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCRA 242 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~~ 242 (257)
.+.. ......+....+.+..+- ..++ +|++++.+ +++++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGA-EIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-SEEEECCTTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCC-CEEEEeccCCCcccHHHHHHHHH
Confidence 7530 011224455555555542 2455 78999998 998887663
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-11 Score=110.00 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=86.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+.|.+++.|..|+|||||+++|.... +...+ .|.+..+....+ .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------v~~~e~~GIT~~i~~~~v-------------~---------------- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------VASGEAGGITQHIGAYHV-------------E---------------- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------HSBTTBCCCCCCSSCCCC-------------C----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------CccccCCCeeEeEEEEEE-------------E----------------
Confidence 56899999999999999999998520 00011 111000000000 0
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||....... .......+|.+++|+|+.......... ..........|.
T Consensus 48 --------~~~~~i~~iDTPGhe~f~~~--------~~~~~~~aD~aILVVda~~g~~~qT~e-----~l~~~~~~~vPi 106 (501)
T 1zo1_I 48 --------TENGMITFLDTPGHAAFTSM--------RARGAQATDIVVLVVAADDGVMPQTIE-----AIQHAKAAQVPV 106 (501)
T ss_dssp --------TTSSCCCEECCCTTTCCTTS--------BCSSSBSCSSEEEEEETTTBSCTTTHH-----HHHHHHHTTCCE
T ss_pred --------ECCEEEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEeecccCccHHHHH-----HHHHHHhcCceE
Confidence 12345779999996443211 123345689999999997643221110 112233445688
Q ss_pred EEEEeCCCCCCcC--CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPE--RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~--~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+.+.. +....+.........+....+++ .|++++.|+++++..+.
T Consensus 107 IVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 107 VVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp EEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred EEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 9999999997532 11010000000001111224565 79999999999988774
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-10 Score=91.72 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... . ....++.+++|+|+........... .+...+.+. ..+.++|.||+|+
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~ilv~D~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRP-----L---SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp EEEEEEEECCSGGGTTTGG-----G---GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEeCCCcHhhhHHHH-----h---hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEechhh
Confidence 4578999999643322111 1 1235789999999987543221100 122222222 3467889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+.. ...-..++...+.+..+ ...++ .|++ ++.++++++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 198 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHH
Confidence 7531 01112344555555544 23455 6887 578899887654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=89.07 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHH-----hhcCEEEE
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQI-----AFADVVIL 193 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql-----~~~~vivl 193 (257)
...+.|+||+|.......... .. .....++.+++|+|+.... ..... +...+.++ ..+.++|.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~--~~---~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFD--YE---MIFRGTGALIYVIDAQDDYMEALTR------LHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCC--HH---HHHHTCSEEEEEEETTSCCHHHHHH------HHHHHHHHHHHCTTCEEEEEE
T ss_pred eeEEEEEECCCCHHHHhhhhh--cc---cccccCCEEEEEEECCCchHHHHHH------HHHHHHHHHhcCCCCcEEEEE
Confidence 366889999996542211100 00 0122478999999998741 11121 12233332 45678899
Q ss_pred eCCCCCCcCCCcchHHHH----HHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDEL----EKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~----~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+.+.+........+ ...+.+. .....++ .|++. .++++++..+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 999998753210111111 1222221 2234555 78888 9999887654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-10 Score=105.74 Aligned_cols=109 Identities=20% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||........ ......+|.+++|+|+.......... ....+.....|.++++||+|+.+
T Consensus 70 ~~i~liDTPGhe~F~~~~--------~r~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLR--------KRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CEEEEECCCTTSCCTTSB--------CSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence 458999999975432211 12234589999999999743222211 12233445668899999999975
Q ss_pred cCCC--------------c-------chHHHHHHHHHHhC-------------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERS--------------G-------DSLDELEKEIHEIN-------------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~--------------~-------~~l~~~~~~l~~~~-------------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.... . +.+.++...+.+.. ...+++ .|++++.|+++|++.+.
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 3110 0 01112233333221 122455 79999999999887763
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=103.46 Aligned_cols=109 Identities=20% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.|+||||..+..... ......+|.+++|+|+.......... ....+.+...+. ++++||+|+
T Consensus 65 ~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNM--------ITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SCEEEEEECSSHHHHHHHH--------HHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHH--------HhhHhhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCeEEEEEECccc
Confidence 4678999999964322211 12234689999999998743221110 122334556675 688999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCCcC----------hhhhhcCc
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQVD----------LSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~----------~~~l~~~~ 241 (257)
.+.++. ....+++.+.++...- ..+++ .|++++.+ +.+|++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV 189 (397)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence 863211 1122455666665542 24555 68877543 66777665
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=103.95 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.+...+.++|+||+|+.
T Consensus 74 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~~llVvDa~~g~~~~~~~-----~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVE--------RSLRVLDGAVTVLDAQSGVEPQTET-----VWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHH--------HHHHHCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECTTST
T ss_pred CeeEEEEECcCCcchHHHHH--------HHHHHCCEEEEEECCCCCCcHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 46789999999876433221 1123479999999998754332211 1223344567889999999998
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
..+
T Consensus 141 ~~~ 143 (693)
T 2xex_A 141 GAN 143 (693)
T ss_dssp TCC
T ss_pred ccc
Confidence 753
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.1e-10 Score=103.63 Aligned_cols=110 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... +.....+...+.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~~IlVvDa~~g~~~~t~~-----~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTY--------RTLTAVDCCLMVIDAAKGVEDRTRK-----LMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHH--------HGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHTTTTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhHHHHHH--------HHHHHCCEEEEEEeCCccchHHHHH-----HHHHHHHcCCCEEEEEcCcCCc
Confidence 46788999999866433222 1223579999999998753322110 1222233456789999999998
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
..+. .+.++.++..+....-...+. .|+.++.|+.+++.....
T Consensus 148 ~~~~-~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 148 IRDP-MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp CSCH-HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred cccH-HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence 7542 122334433332110001122 366777788877765533
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.1e-10 Score=98.77 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=31.7
Q ss_pred EEccccccccCc---ccCC--CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNS---HEND--DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~---~~~~--~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++.+.++.. ..++ ...+|.++|+|.+|||||||+|+|+..
T Consensus 10 ~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 10 KIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp HTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345666666643 2232 358899999999999999999999963
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=88.62 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=87.7
Q ss_pred ccccccccCccc---CCCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCcee
Q 025133 15 DETTHEFSNSHE---NDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALV 88 (257)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~ 88 (257)
+++.+.|++... ....+..+++++|++|+||||++..|... ..++++.++..|+.. ......+... ...+..+
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r-~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS-SHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-HHHHHHHHHHhccCCeEE
Confidence 556666765431 11223458899999999999999999753 348899999988654 1111110000 0001100
Q ss_pred eeeeecCCCceeeccchhHH-HHHHHHHHhcCCCCEEEEecCCCCC--cH-HHHHhcccccccccceeeeeEEEEEeccc
Q 025133 89 EEWVELANGCICCTVKHSLV-QALEQLVQRKERLDHILLETTGLAN--PA-PLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 89 ~~~~~l~~gcicc~~~~~~~-~~l~~~~~~~~~~~~ilIDt~G~~~--~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
..-..+ ..+.++. ..+..+. ..++|++||||||... .. .+...+. .+......+.+++|+|+..
T Consensus 157 ---~~~~~~----~~p~~~~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 157 ---YGEPGE----KDVVGIAKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---ECCTTC----CCHHHHHHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGG
T ss_pred ---EecCCC----CCHHHHHHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCc
Confidence 000000 0112222 2232221 3679999999999766 32 2322111 1112335788999999976
Q ss_pred hHHHHhhhccCCChhHHHHHHh--hc-CEEEEeCCCCCC
Q 025133 165 LLFQIDKYRHLSSYPEAIHQIA--FA-DVVILNKVDLVS 200 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ql~--~~-~vivlNK~D~~~ 200 (257)
...... ...++. .+ ..+|+||+|...
T Consensus 225 g~~~~~----------~~~~~~~~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 225 GQKAYD----------LASKFNQASKIGTIIITKMDGTA 253 (297)
T ss_dssp GGGHHH----------HHHHHHHTCTTEEEEEECGGGCT
T ss_pred hHHHHH----------HHHHHHhhCCCCEEEEeCCCCCc
Confidence 432221 122222 34 578999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.8e-10 Score=93.44 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++|.+|+|||||+|+|+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999995
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=84.29 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.|.||+|......+.... ....+.+++|.|.......... . .+...+.+.. .|.++|.||+|
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~--------~~~a~~~ilv~di~~~~Sf~~i-~---~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSY--------IRDSAAAVVVYDITNVNSFQQT-T---KWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHH--------HTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhHHHHH--------hccccEEEEEeecchhHHHHHH-H---HHHHHHHHhcCCCCeEEEEeeccc
Confidence 346689999976654443322 1246788999998865443221 0 0122222222 34577889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..++..++.++.+ +..+ .|++++.|+++++..+
T Consensus 130 l~~~r~V--~~~e~~~~a~~~~--~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 130 LADKRQV--SIEEGERKAKELN--VMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred hHhcCcc--cHHHHhhHHHHhC--CeeEEEeCCCCcCHHHHHHHH
Confidence 9765442 2445555555554 4555 8999999999988765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=102.05 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++++||+|+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r--------~l~~aD~aILVVDa~~gv~~qt~~-----~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSR--------ALAACEGALLLIDASQGIEAQTVA-----NFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHH--------HHHTCSEEEEEEETTTBCCHHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHHHHHH--------HHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHCCCCEEEEEeccCccc
Confidence 45779999998765433221 123468999999998764322211 11122334567899999999987
Q ss_pred cCCCcchHHHHHHHHHHhCC---CCEEEEeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIHEINS---LAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~---~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+ ...+...+.+... ...+..|++++.|++++++.+.
T Consensus 140 a~-----~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~ 179 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179 (600)
T ss_dssp CC-----HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHH
T ss_pred cC-----HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHH
Confidence 53 2333444444322 1235589999999999988763
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=93.99 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred ccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++|++.|+.+.++.+..+.+ +++|++|+|||||++.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence 47888998888888777776 8999999999999999874
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-10 Score=96.40 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFHHVRA---KWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEEEEECCCGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSCEEEEEECHHH
T ss_pred EEEEEEeCCCchhhhHHHH--------HhccCCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhhCCCCcEEEEEEchhc
Confidence 3456999999654322111 11235789999999987544322100 022233333 5678999999999
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+... .....+....+.+..+. .+++ +|++++.|+++++..+
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHH
T ss_pred ccccchhhhccccccccccHHHHHHHHHHcCC-cEEEEecCCCCcCHHHHHHHH
Confidence 76421 01123344444444432 2455 7999999999988765
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.6e-11 Score=94.75 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||....... .......++.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~p~ilv~nK~D 149 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD 149 (199)
T ss_dssp EEEEEECCTTCTTCCCC--------SCC--CCCSEEEECC-CCCSHHHHHH-H---HHHHHHHSCC-CCSEEEEC-CCSS
T ss_pred EEEEEEECCCcHhHHHH--------HHHHhhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhccCCCCEEEEEECcc
Confidence 45789999995432211 11123457899999999875432111 0 011112111 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
+.+..+.. .+......+..+ .+++ +|++++.++++++..+....
T Consensus 150 l~~~~~v~--~~~~~~~~~~~~--~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 150 LTTKKVVD--YTTAKEFADSLG--IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CC--CCCC--SCC-CHHHHTTT--CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CCccccCC--HHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 98654321 112223333322 3444 79999999999988765443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-10 Score=90.93 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHH-hhcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI-AFADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql-~~~~vivlNK~D 197 (257)
...+.+.||+|......+.. .. ....+.+++|+|.+.....++.... +...+ ... ..|.++|.||+|
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~-----~~---~~~~~~~i~v~d~~~~~~s~~~~~~---~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHP-----HF---MTQRALYLAVYDLSKGQAEVDAMKP---WLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSH-----HH---HHHSEEEEEEEEGGGCHHHHHTHHH---HHHHHHHHCTTCEEEEEEECGG
T ss_pred ceEEEEEecCCCHHHHHhhH-----HH---ccCCcEEEEEEeCCcchhHHHHHHH---HHHHHHhhCCCCcEEEEEECCC
Confidence 35677999999542211111 11 1134678889998764322222110 11111 111 345677779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCC---EEE-EeecCCc-ChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLA---HVI-RSVRCQV-DLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a---~i~-~s~~~~~-~~~~l~~~~~ 242 (257)
+.+..............+.+..... .++ +|++++. ++++|+..+.
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHH
Confidence 9764321000111112222112222 244 6888885 8888877653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=85.45 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=55.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.++++||+|........ ...+ ....+.+++|+|......... .. .+...+.+. ..|.++|.||+|
T Consensus 57 ~l~~~Dt~~~~~~~~~~-----~~~~--~~~~~~~i~v~dv~~~~s~~~-~~---~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 57 TIILLDMWENKGENEWL-----HDHC--MQVGDAYLIVYSITDRASFEK-AS---ELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEECCCCC----CTT-----GGGH--HHHCSEEEEEEETTCHHHHHH-HH---HHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEeccCcchhhhH-----HHhh--cccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhCCCCCeEEEEEechh
Confidence 46789999965421111 1111 123567888888875332111 00 011122222 346688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+...... ..+....+.... .++++ .|++++.|+++++....
T Consensus 126 l~~~r~v--~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~ 167 (192)
T 2cjw_A 126 LVRXREV--SVSEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIV 167 (192)
T ss_dssp CGGGCCS--CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred hhccccc--cHHHHHHHHHHh--CCceEEeccccCCCHHHHHHHHH
Confidence 9754332 123322222222 24555 79999999999887653
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=84.15 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=58.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc------cchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG------VERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~------~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
++++++|+|++|||||||+.+|+.. ..+.+++++.++++. .. .|..+... .+. .......++|.||.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~--aGa--~~v~~~s~~~~~~~ 77 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHER--AGA--VATAVEGDGLLQLH 77 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHh--cCC--CeEEeccCCEEEEE
Confidence 4789999999999999999999875 458899999998874 32 23332222 111 12445568888886
Q ss_pred cc--hhHHHHHHHHHHhcCCCCEEEEecCCC
Q 025133 103 VK--HSLVQALEQLVQRKERLDHILLETTGL 131 (257)
Q Consensus 103 ~~--~~~~~~l~~~~~~~~~~~~ilIDt~G~ 131 (257)
.+ +--...+.+++.+. +.|++|||+.|-
T Consensus 78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~ 107 (169)
T 1xjc_A 78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ 107 (169)
T ss_dssp ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence 52 10112334444444 799999998884
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=101.41 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........|.++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~--------~l~~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSR--------SLAACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHH--------HHHHCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHHH--------HHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCccc
Confidence 45779999998665433221 123478999999998653321110 01112234567899999999987
Q ss_pred cCCCcchHHHHHHHHHHhC---CCCEEEEeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIHEIN---SLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~---~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.. ...+...+.+.. +...+..|++++.|++++++.+.
T Consensus 138 a~-----~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~ 177 (599)
T 3cb4_D 138 AD-----PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177 (599)
T ss_dssp CC-----HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHH
T ss_pred cc-----HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHh
Confidence 53 233333333322 22245689999999999988763
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-09 Score=99.41 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=70.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.++..++|+|.+|+|||||+++|+... .-.+.+-+ +.|. ...|...... ..+ ..+...+.++.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v--~~~~-~~~d~~~~E~-~~g------iTi~~~~~~~~------ 73 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGA-ATMDFMEQER-ERG------ITITAAVTTCF------ 73 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC--------------------------------------CCEEEEE------
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee--cCCc-eeccCchhhh-hcc------cccccceEEEE------
Confidence 467789999999999999999998421 00001111 1111 0001000000 000 01111111111
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.|+||||..+....... ....+|.+++|+|+.......... ......+...+
T Consensus 74 ---------~~~~~i~liDTPG~~df~~~~~~--------~l~~aD~~ilVvDa~~g~~~~t~~-----~~~~~~~~~~p 131 (691)
T 1dar_A 74 ---------WKDHRINIIDTPGHVDFTIEVER--------SMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKVP 131 (691)
T ss_dssp ---------ETTEEEEEECCCSSTTCHHHHHH--------HHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCC
T ss_pred ---------ECCeEEEEEECcCccchHHHHHH--------HHHHCCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence 22467899999998765433321 123479999999998654322211 12223445678
Q ss_pred CEEEEeCCCCCCcC
Q 025133 189 DVVILNKVDLVSPE 202 (257)
Q Consensus 189 ~vivlNK~D~~~~~ 202 (257)
.++++||+|+...+
T Consensus 132 ~ivviNKiD~~~~~ 145 (691)
T 1dar_A 132 RIAFANKMDKTGAD 145 (691)
T ss_dssp EEEEEECTTSTTCC
T ss_pred EEEEEECCCcccCC
Confidence 89999999998654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=91.28 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=88.4
Q ss_pred ccccccccCcccCCCc-ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCceee
Q 025133 15 DETTHEFSNSHENDDV-SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGALVE 89 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~~~ 89 (257)
+++++.|++....-+. +..+++++|+.|+||||++..|... ..++++.++..|+.. ......+ .... .++.+
T Consensus 80 ~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r-~aa~~qL~~~~~~-~gv~v- 156 (425)
T 2ffh_A 80 EALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLGEK-VGVPV- 156 (425)
T ss_dssp HHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC-HHHHHHHHHHHHH-HTCCE-
T ss_pred HHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC-chhHHHHHHhccc-CCccE-
Confidence 4567777664311111 4458899999999999999999763 458899999988764 2111111 0000 01100
Q ss_pred eeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHH
Q 025133 90 EWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLF 167 (257)
Q Consensus 90 ~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~ 167 (257)
.....+ ....++ ...+..+. ..++|++||||||.... ......+. .+......+.+++|+|+.....
T Consensus 157 --~~~~~~----~~p~~i~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~ 225 (425)
T 2ffh_A 157 --LEVMDG----ESPESIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQE 225 (425)
T ss_dssp --EECCTT----CCHHHHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTH
T ss_pred --EecCCC----CCHHHHHHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHH
Confidence 000000 011122 22222221 36799999999995543 22332211 1122234678899999986533
Q ss_pred HHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCc
Q 025133 168 QIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 168 ~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~ 201 (257)
.... ...+..--....+|+||.|....
T Consensus 226 av~~-------a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 226 ALSV-------ARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp HHHH-------HHHHHHHTCCCEEEEESGGGCSS
T ss_pred HHHH-------HHHHHhcCCceEEEEeCcCCccc
Confidence 3221 11111111236789999987543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.2e-10 Score=101.02 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=77.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.++++|.+|+|||||+|+|++... ..+.+.+++.+|++..... ..
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~---------------~~------------------- 209 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE---------------IP------------------- 209 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE---------------EE-------------------
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE---------------EE-------------------
Confidence 588999999999999999986310 1133455666665221110 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccc---cceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLE---SAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~---~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
.+..+.++||||+..+....+.+. ...+. ...+++.+++++|+.+ +...+.... .+...+.
T Consensus 210 ------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~-------~l~~~~~ 275 (369)
T 3ec1_A 210 ------LESGATLYDTPGIINHHQMAHFVD-ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLD-------YIKGGRR 275 (369)
T ss_dssp ------CSTTCEEEECCSCCCCSSGGGGSC-TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEE-------EEESSSE
T ss_pred ------eCCCeEEEeCCCcCcHHHHHHHHh-HHHHHHHhcccccCceEEEEcCCceEEECCEEEEE-------EccCCCc
Confidence 112367999999887653332221 11222 2257899999999943 222111111 1112345
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHH
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l 215 (257)
+.++++||.|.+...+.....+.+.+.+
T Consensus 276 ~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 276 SFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp EEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred eEEEEecCCcccccccHHHHHHHHHHhc
Confidence 7789999999998766444444444443
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-09 Score=103.34 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.|+||||..+..... ......+|.+|+|+|+.......... ....+.+.+.+. ++++||+|+
T Consensus 358 ~~kI~IIDTPGHedF~~~m--------i~gas~AD~aILVVDAtdGv~~QTrE-----hL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNM--------ITGAAQMDGAILVVAATDGPMPQTRE-----HILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHH--------HHTSCCCSEEEEEEETTTCSCTTHHH-----HHHHHHHHTCSCEEEEEECCTT
T ss_pred CEEEEEEECCChHHHHHHH--------HHHHhhCCEEEEEEcCCccCcHHHHH-----HHHHHHHcCCCeEEEEEeeccc
Confidence 4678999999965332211 12344689999999998753221110 123344556774 678999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCC--------cChhhhhcCcc
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQ--------VDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~--------~~~~~l~~~~~ 242 (257)
.+..+. ....+++...++.... ..+++ .|++++ .++.+|++.+.
T Consensus 425 v~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 425 VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 863221 1122455566665542 34555 788887 35667776553
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.77 E-value=9e-10 Score=98.08 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=69.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC--CeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~--~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.++++|.+|+|||||+|+|++...+ .+.+.++..+|++..... ..
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~---------------~~------------------ 208 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID---------------IP------------------ 208 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE---------------EE------------------
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE---------------EE------------------
Confidence 5889999999999999999864211 123445666664221100 01
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccc--cccccceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~--~~~~~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
-+..+.++||||+..+..+.+.+..+ ..+....+++.+++++|+.. +...+.... .+...+.
T Consensus 209 -------~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d-------~l~~~~~ 274 (368)
T 3h2y_A 209 -------LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFD-------YVSGGRR 274 (368)
T ss_dssp -------SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEE-------EEESSSE
T ss_pred -------ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEE-------EecCCCc
Confidence 11236799999988765332211100 01112356788999999942 222111110 1112345
Q ss_pred cCEEEEeCCCCCCcCC
Q 025133 188 ADVVILNKVDLVSPER 203 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~ 203 (257)
+.++++||+|.+...+
T Consensus 275 ~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 275 AFTCHFSNRLTIHRTK 290 (368)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred eEEEEecCcccccccc
Confidence 7789999999998765
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=88.52 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=81.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhh-cCCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|..|+||||++.+|... .. |+++.++..|+......+ .+.. ....+.. .+..+. .....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~-ql~~~~~~~~l~-----v~~~~~--~~dp~~ 170 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK-QLETLAEQVGVD-----FFPSDV--GQKPVD 170 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH-HHHHHHHHHTCE-----ECCCCS--SSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH-HHHhhcccCCee-----EEeCCC--CCCHHH
Confidence 4558889999999999999999763 44 899999999986521111 1100 0000110 011110 001122
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 L-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+ ...+..+. ..++|++||||||.... ......+. .+......+.+++|+|+........ ....
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l~~~~~l~~~L~---~~~~~~~p~~vllVvda~~g~~~~~----------~~~~ 235 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRLHVDEAMMDEIK---QVHASINPVETLFVVDAMTGQDAAN----------TAKA 235 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCCTTCHHHHHHHH---HHHHHSCCSEEEEEEETTBCTTHHH----------HHHH
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcccccHHHHHHHH---HHHHhhcCcceeEEeecchhHHHHH----------HHHH
Confidence 2 22222221 35799999999996553 23332221 1122335678899999986533211 1122
Q ss_pred Hh--hc-CEEEEeCCCCCCc
Q 025133 185 IA--FA-DVVILNKVDLVSP 201 (257)
Q Consensus 185 l~--~~-~vivlNK~D~~~~ 201 (257)
+. .+ ..+|+||+|....
T Consensus 236 f~~~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 236 FNEALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp HHHHSCCCCEEEECTTSSSC
T ss_pred HhccCCCeEEEEecCCCCcc
Confidence 22 23 4679999998644
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=80.49 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D~ 198 (257)
.+.+.||+|.......... . ....+.+++|+|......... ... +...+.+ ...+.++++||+|+
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSA-----Y---YRGAVGALLVYDIAKHLTYEN-VER---WLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp EEEEEECSSGGGTTCCCHH-----H---HTTCSEEEEEEETTCHHHHHT-HHH---HHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCchhhhhhhHH-----H---HhcCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhcCCCCeEEEEEECccc
Confidence 4568999995422111110 0 123577899999886544211 100 1111222 13456788999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+........ +...++ .|+..+.++++++..+
T Consensus 123 ~~~~~~--~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 123 RHLRAV--PTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp GGGCCS--CHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccCc--CHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHH
Confidence 764332 23344444443 445566 7888888998887655
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=86.34 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=48.1
Q ss_pred eeeeEEEEEeccch--HHHHhhhccCCChhHHHHH----HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 152 RLDSIITVVDAKNL--LFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 152 ~~~~vi~vvDa~~~--~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
.++.+++|+|+.+. ... ..... +...+.+ -..|.++|.||+|+.+... ++....+.+.. ....++
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~---~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~~~-~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLK---FVSNLYNQLAKTKKPIVVVLTKCDEGVERY----IRDAHTFALSK-KNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHH---HHHHHHHHHHHTTCCEEEEEECGGGBCHHH----HHHHHHHHHTS-SSCCEE
T ss_pred cCCEEEEEEECCCCchhhH-HHHHH---HHHHHHHHhccCCCCEEEEEEcccccccHH----HHHHHHHHHhc-CCCeEE
Confidence 58999999999764 211 11100 1111211 2457789999999975432 34444444332 234555
Q ss_pred -EeecCCcChhhhhcCc
Q 025133 226 -RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 -~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++..+
T Consensus 233 e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 233 ETSARSNVNVDLAFSTL 249 (255)
T ss_dssp ECBTTTTBSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 7999999999988654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=82.83 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=79.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC----CCCceeeeeeecCCCceeeccc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG----EGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~----~~~~~~~~~~~l~~gcicc~~~ 104 (257)
+..+++|+|++|+||||++..|... ..++++.++..|+.. ......+.... ..+..+ ++.+.......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r-~~a~~ql~~~~~~~~~~~l~v-----ip~~~~~~~p~ 177 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR-AGATQQLEEWIKTRLNNKVDL-----VKANKLNADPA 177 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC-HHHHHHHHHHHTTTSCTTEEE-----ECCSSTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHhccccCCceE-----EeCCCCCCCHH
Confidence 4458999999999999999999753 348899999888653 11100010000 011110 10000000001
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+...+.... ..++|+|||||||..... ..++.+. +...+. .....+.+++|+|+......+... .
T Consensus 178 ~~~~~~l~~~~--~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~-------~ 248 (320)
T 1zu4_A 178 SVVFDAIKKAK--EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQA-------E 248 (320)
T ss_dssp HHHHHHHHHHH--HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHH-------H
T ss_pred HHHHHHHHHHH--hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHH-------H
Confidence 11223333222 457999999999966532 2222211 001110 012357889999998654332211 1
Q ss_pred HHHHHhhcCEEEEeCCCCCC
Q 025133 181 AIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~ 200 (257)
.+.+--...-+|+||.|...
T Consensus 249 ~~~~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 249 EFSKVADVSGIILTKMDSTS 268 (320)
T ss_dssp HHTTTSCCCEEEEECGGGCS
T ss_pred HHhhcCCCcEEEEeCCCCCC
Confidence 11111113458999999654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=74.49 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=56.1
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDLV 199 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D~~ 199 (257)
+.+.||+|.......... . ....+.+++|+|....... ..... +...+.+ ...+.++++||+|+.
T Consensus 80 ~~i~Dt~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSA-----Y---YRGAVGALLVYDIAKHLTY-ENVER---WLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEECSCCSSSCCCHH-----H---HTTCCEEEEEEETTCHHHH-HTHHH---HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCCcchhhhhHH-----H---hhcCCEEEEEEECcCHHHH-HHHHH---HHHHHHHhcCCCCcEEEEEECcccc
Confidence 457899997543211110 0 1124678899998765432 11100 1111122 134568899999997
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..+. ..+.......+ |...++ .|+..+.++++++..+
T Consensus 148 ~~~~~--~~~~a~~l~~~--~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 148 HLRAV--PTDEARAFAEK--NGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp GGCCS--CHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence 64332 23444444433 445566 6888888998887654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-07 Score=79.74 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=91.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++..|... ..++++.++..|... ......+-.. ...+..+ .....++ .+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-~~a~eqL~~~~~~~gl~~--~~~~s~~-----~~~~v 174 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWGERVGATV--ISHSEGA-----DPAAV 174 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHHHHHTCEE--ECCSTTC-----CHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-HHHHHHHHHHHHHcCCcE--EecCCcc-----CHHHH
Confidence 4458999999999999999999763 347889888877543 1111110000 0000100 0000110 11111
Q ss_pred -HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 -VQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 -~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
...+.... ..+++++++||||.... ..+.+.+. +...+.. ....+.+++|+|+......+.. ...+
T Consensus 175 ~~~al~~a~--~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~-------a~~~ 245 (306)
T 1vma_A 175 AFDAVAHAL--ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQ-------AKIF 245 (306)
T ss_dssp HHHHHHHHH--HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHH-------HHHH
T ss_pred HHHHHHHHH--hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHH-------HHHH
Confidence 22333322 45799999999996443 22322221 0111111 1235678899999865443321 1112
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.+.-...-+|+||.|....- ..+.......+ .+|.....++ .+++|
T Consensus 246 ~~~~~i~gvVlTk~D~~~~g------G~~l~~~~~~~--~Pi~~i~~Ge-~~~dl 291 (306)
T 1vma_A 246 KEAVNVTGIILTKLDGTAKG------GITLAIARELG--IPIKFIGVGE-KAEDL 291 (306)
T ss_dssp HHHSCCCEEEEECGGGCSCT------THHHHHHHHHC--CCEEEEECSS-SGGGE
T ss_pred HhcCCCCEEEEeCCCCccch------HHHHHHHHHHC--CCEEEEeCCC-Chhhc
Confidence 22223467899999975432 23334444433 3455444443 35544
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=94.20 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
...+.|+||||..+...... .....++.+++|+|+.......... +.....+.+.+.++++||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~~--------~~l~~ad~~ilVvD~~~g~~~qt~~-----~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIR--------GALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHHH--------HHHhhcCcEEEEEcCCcccchhHHH-----HHHHHHHccCCEEEEecCCchh
Confidence 45678999999765433221 1123478999999987654332211 2223334467889999999997
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-07 Score=81.62 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=78.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhh-cCCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+.-+++++|++||||||+++.|... ..+.++.+...+... ......+.. ....++.+ ..-..+. ......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r-~~a~eql~~~~~~~gv~~---v~q~~~~---~p~~~v 200 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR-AGAIEQLEEHAKRIGVKV---IKHSYGA---DPAAVA 200 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS-TTHHHHHHHHHHHTTCEE---ECCCTTC---CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc-cchHHHHHHHHHHcCceE---EeccccC---CHHHHH
Confidence 3458999999999999999999763 346688888776532 111110000 00001100 0000000 000111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.+.+... ...+++++++||+|..+. ....+.+. .+......+..++++|+......... ...+.+-.
T Consensus 201 ~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~-------~~~~~~~~ 268 (328)
T 3e70_C 201 YDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ-------ARQFNEAV 268 (328)
T ss_dssp HHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHHHHS
T ss_pred HHHHHHH--HhccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH-------HHHHHHhc
Confidence 2222211 134688999999997542 22332221 11222346778999999876543321 12222222
Q ss_pred hcCEEEEeCCCCCC
Q 025133 187 FADVVILNKVDLVS 200 (257)
Q Consensus 187 ~~~vivlNK~D~~~ 200 (257)
....+++||.|...
T Consensus 269 ~it~iilTKlD~~a 282 (328)
T 3e70_C 269 KIDGIILTKLDADA 282 (328)
T ss_dssp CCCEEEEECGGGCS
T ss_pred CCCEEEEeCcCCcc
Confidence 46789999999743
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=98.64 E-value=9.1e-08 Score=91.92 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
.+.+.||||||..+....... ....+|.+|+|+|+.......... ......+...+.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~--------~l~~aD~aIlVvDa~~gv~~qt~~-----~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVER--------SMRVLDGAVMVYCAVGGVQPQSET-----VWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchHHHHHH--------HHHHCCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCEEEEEeCCCcc
Confidence 477999999998764333221 123479999999998764322111 1222334456889999999998
Q ss_pred CcCCCcchHHHHHHHH
Q 025133 200 SPERSGDSLDELEKEI 215 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l 215 (257)
..+ ..+.+++++..+
T Consensus 148 ~~~-~~~~~~~l~~~l 162 (704)
T 2rdo_7 148 GAN-FLKVVNQIKTRL 162 (704)
T ss_pred ccc-HHHHHHHHHHHh
Confidence 754 223344444443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=80.95 Aligned_cols=146 Identities=20% Similarity=0.188 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|++|+||||++..|... ..|+++.++..|+.. ......+... ...+.... .+....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r-~~a~eqL~~~~~~~gl~~~----------~~~~~~~ 172 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR-IAAVEQLKTYAELLQAPLE----------VCYTKEE 172 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS-TTHHHHHHHHHTTTTCCCC----------BCSSHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc-chHHHHHHHHHHhcCCCeE----------ecCCHHH
Confidence 3458999999999999999999753 458899999988753 2111111110 00011000 0011223
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+...+. ...+++++|+||+|..... ..+..+. ..+. ....+.+++|+|+............ .+..+
T Consensus 173 l~~al~----~~~~~dlvIiDT~G~~~~~~~~~~el~--~~l~-~~~~~~~~lVl~at~~~~~~~~~~~------~~~~l 239 (296)
T 2px0_A 173 FQQAKE----LFSEYDHVFVDTAGRNFKDPQYIDELK--ETIP-FESSIQSFLVLSATAKYEDMKHIVK------RFSSV 239 (296)
T ss_dssp HHHHHH----HGGGSSEEEEECCCCCTTSHHHHHHHH--HHSC-CCTTEEEEEEEETTBCHHHHHHHTT------TTSSS
T ss_pred HHHHHH----HhcCCCEEEEeCCCCChhhHHHHHHHH--HHHh-hcCCCeEEEEEECCCCHHHHHHHHH------HHhcC
Confidence 333333 2357899999999976542 2222211 1111 1124567889998876544332211 11111
Q ss_pred hhcCEEEEeCCCCCCc
Q 025133 186 AFADVVILNKVDLVSP 201 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~ 201 (257)
...-+|+||.|....
T Consensus 240 -~~~giVltk~D~~~~ 254 (296)
T 2px0_A 240 -PVNQYIFTKIDETTS 254 (296)
T ss_dssp -CCCEEEEECTTTCSC
T ss_pred -CCCEEEEeCCCcccc
Confidence 235788999997643
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-07 Score=80.45 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred EEccccccccCcccCCCc-ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCce
Q 025133 13 RIDETTHEFSNSHENDDV-SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGAL 87 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~ 87 (257)
..+++.+.|++.....+. +..+++++|++|+||||++..|... ..+.++.++..++.. ......+ .... .+..
T Consensus 78 ~~~~l~~~~~~~~~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~-~~~~~ql~~~~~~-~~l~ 155 (295)
T 1ls1_A 78 VYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLGEK-VGVP 155 (295)
T ss_dssp HHHHHHHHTTSSCCCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHCCCCceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc-HhHHHHHHHhccc-CCeE
Confidence 346677777654211111 4458899999999999999999763 347899999888754 1111110 0000 0000
Q ss_pred eeeeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 88 VEEWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 88 ~~~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+ +..+. .....++ ...+.... ..++|++||||||.... ......+. .+......+.+++|+|+...
T Consensus 156 ~-----~~~~~--~~~p~~l~~~~l~~~~--~~~~D~viiDtpp~~~~d~~~~~~l~---~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 156 V-----LEVMD--GESPESIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp E-----EECCT--TCCHHHHHHHHHHHHH--HHTCCEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGT
T ss_pred E-----EEcCC--CCCHHHHHHHHHHHHH--hCCCCEEEEeCCCCccccHHHHHHHH---HHhhhcCCCEEEEEEeCCCc
Confidence 0 00000 0011122 22333322 25799999999985432 22222111 01111235677899998764
Q ss_pred HHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 166 LFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
...... ...+..--...-+|+||.|...
T Consensus 224 ~~~~~~-------~~~~~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 224 QEALSV-------ARAFDEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHH-------HHHHHHHTCCCEEEEECGGGCS
T ss_pred HHHHHH-------HHHHhhcCCCCEEEEECCCCCc
Confidence 332221 1111111123668999999764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-08 Score=82.82 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=35.8
Q ss_pred eeeeeEEEEEecc-chHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHH
Q 025133 151 VRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE 217 (257)
Q Consensus 151 ~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~ 217 (257)
.++...++++|.. ......+.. +...+.+. .+.++|+||+|.++.++.......+.+.++.
T Consensus 110 aRal~~lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~ 171 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEV 171 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred heeeeeeEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 3456778999965 444443321 12222222 5678899999999887643444445555544
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.2e-08 Score=85.39 Aligned_cols=103 Identities=23% Similarity=0.179 Sum_probs=57.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.+|+|||||+|+|+.. + +.+.+.|+.+...+... .. ..+.-...|.+
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~----~-~~v~~~p~tTi~p~~g~-------------v~---------~~~~r~~~l~~ 56 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA----G-IEAANYPFCTIEPNTGV-------------VP---------MPDPRLDALAE 56 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCCSSE-------------EE---------CCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCceECceEEE-------------Ee---------cCCcccceeee
Confidence 5789999999999999999953 2 33445555422221100 01 11111222332
Q ss_pred HHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 114 LVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 114 ~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
... +..+..+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus 57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~-~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred eecccceeeeEEEEEECCCCcccccccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence 221 01124689999999987654433332 233444567899999999975
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-07 Score=83.90 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=76.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-hhh-hcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMI-NEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-~~~-~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
-+++|+|++|||||||++.|... ..+.++.+...+.......+. ... .....+. + .-..+. .....+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~v-V----~Q~~~~---~p~~tV~ 365 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV-I----AQHTGA---DSASVIF 365 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCE-E----CCSTTC---CHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceE-E----ecccCc---CHHHHHH
Confidence 48999999999999999999763 336677776655432000000 000 0000000 0 000000 0011122
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+.... ..+++++||||+|..+. ..++..+. +....+. ....+.+++++|+......+.. ...+.+
T Consensus 366 e~l~~a~--~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~-------ak~f~~ 436 (503)
T 2yhs_A 366 DAIQAAK--ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-------AKLFHE 436 (503)
T ss_dssp HHHHHHH--HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-------HHHHHH
T ss_pred HHHHHHH--hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-------HHHHHh
Confidence 2222222 35789999999997543 33332221 0000010 0123568889999987655432 112222
Q ss_pred HhhcCEEEEeCCCCCC
Q 025133 185 IAFADVVILNKVDLVS 200 (257)
Q Consensus 185 l~~~~vivlNK~D~~~ 200 (257)
.-.-..+|+||.|...
T Consensus 437 ~~~itgvIlTKLD~ta 452 (503)
T 2yhs_A 437 AVGLTGITLTKLDGTA 452 (503)
T ss_dssp HTCCSEEEEECGGGCS
T ss_pred hcCCCEEEEEcCCCcc
Confidence 2234789999999643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-08 Score=86.24 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=27.5
Q ss_pred EEEEccccccccCcccCCC-------cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDD-------VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-------~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++.+ ++.|++.. +.+ ..++-++|+|++|||||||+|.|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 345556 67776543 322 2233399999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-08 Score=79.41 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=34.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++++|+|++|||||||+++|+.. ..+.+++++.++++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999875 457889999988764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-08 Score=95.40 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+....... ....+|.+|+|+|+.......... ......+.+.+.++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~--------~l~~aD~ailVvDa~~g~~~qt~~-----~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTA--------ALRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHH--------HHHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHH--------HHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCeEEEEECCCcc
Confidence 456889999998765433221 123479999999998764332211 1112223456789999999987
Q ss_pred C
Q 025133 200 S 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-07 Score=83.02 Aligned_cols=104 Identities=20% Similarity=0.074 Sum_probs=46.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|++|+|||||+|+|.. .++ .+.+.|+.+..... |-+.+ .+.-...+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg----~~~-~~~~~p~tTi~p~~--------------------g~v~v--~~~r~~~l~ 75 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTN----SQA-SAENFPFCTIDPNE--------------------SRVPV--PDERFDFLC 75 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC------------------CCSE--------------------EEEEC--CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC----CCc-cccCCCccccCcee--------------------EEEEE--CCccceeec
Confidence 3589999999999999999994 333 44455554222111 10100 111111122
Q ss_pred HHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 113 QLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 113 ~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
.... ......+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus 76 ~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg-~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 76 QYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG-NAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHCCSEEECCEEEEEECCC-----------C-CHHHHHHHTSSSEEEEEEC--
T ss_pred cccCcccccccccEEEECCCcccccchhhHHH-HHHHHHHHhcCeEEEEEecCC
Confidence 2110 01134689999999886543222221 123344567899999999864
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-07 Score=83.53 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|+|++|||||||+|.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999985
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=81.90 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred cCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 118 KERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
+.++.+-||||||-.+.. +....+ .-+|.+|+||||..+....... +.....+.+.|-++++||+
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL---------~~~DgAvlVvda~~GV~~qT~~-----v~~~a~~~~lp~i~fINK~ 162 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVL---------TAVDSALVVIDAAKGVEAQTRK-----LMDVCRMRATPVMTFVNKM 162 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHH---------HSCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECT
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHH---------HhcCceEEEeecCCCcccccHH-----HHHHHHHhCCceEEEEecc
Confidence 345678899999977653 333322 3479999999999887654432 2334455677899999999
Q ss_pred CCCCcCCCcchHHHHHHHH
Q 025133 197 DLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l 215 (257)
|....+- .+.+++++..+
T Consensus 163 Dr~~ad~-~~~~~~i~~~l 180 (548)
T 3vqt_A 163 DREALHP-LDVMADIEQHL 180 (548)
T ss_dssp TSCCCCH-HHHHHHHHHHH
T ss_pred cchhcch-hHhhhhhhhhc
Confidence 9987642 23344444444
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-07 Score=87.73 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=50.3
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
+.++.+-||||||-.+.....+. ...-+|.+|+||||..+....... ......+.+.|.++++||+|
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~r--------aL~~~DgavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYR--------SLSVLDGAILLISAKDGVQAQTRI-----LFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHH--------HHTTCSEEECCEESSCTTCSHHHH-----HHHHHHHHTCSCEECCEECC
T ss_pred ECCEEEEEEECCCcHHHHHHHHH--------HHHHhCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeEEEEeccc
Confidence 34566789999998776443321 122379999999999876554332 23344566778999999999
Q ss_pred CCCcC
Q 025133 198 LVSPE 202 (257)
Q Consensus 198 ~~~~~ 202 (257)
....+
T Consensus 131 r~~a~ 135 (638)
T 3j25_A 131 QNGID 135 (638)
T ss_dssp SSSCC
T ss_pred cccCC
Confidence 88765
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=70.54 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=76.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCceeeeeeecCCCceeeccch-
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKH- 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~l~~gcicc~~~~- 105 (257)
+..+++++|++||||||+++.|... ..+.++.+...+... ......+ .... .++.+ ..-..+. ...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r-~~a~~ql~~~~~~-~~i~~---v~q~~~~----~p~~ 171 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKR-LSIPV---IQGPEGT----DSAA 171 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTTTHHHHHHHHH-HTCCE---ECCCTTC----CHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC-hhHHHHHHHHHHh-cCceE---EEeCCCC----CHHH
Confidence 3458999999999999999999763 346788877766432 1100000 0000 00000 0000000 000
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.....+.... ..+++++++||+|..+ .......+. ....+. -....+.+++++|+.......+. ...
T Consensus 172 ~v~~~v~~~~--~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~-------~~~ 242 (304)
T 1rj9_A 172 LAYDAVQAMK--ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ-------AKK 242 (304)
T ss_dssp HHHHHHHHHH--HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH-------HHH
T ss_pred HHHHHHHHHH--hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH-------HHH
Confidence 1112222111 2357899999999654 223322221 000110 01234567889999876554332 112
Q ss_pred HHHHhhcCEEEEeCCCCCC
Q 025133 182 IHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.....++++||.|...
T Consensus 243 ~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHCCSEEEEECTTSSC
T ss_pred HHHHcCCcEEEEECCcccc
Confidence 2222345789999998754
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=64.42 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+++.|+ +..|+||||+.-.|... ..|+++.++..|++... . ........+. .... .....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~--~-~~~~~~~~~~---~~~~--------~~~~~l~~ 67 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL--T-NWSKAGKAAF---DVFT--------AASEKDVY 67 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH--H-HHHTTSCCSS---EEEE--------CCSHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH--H-HHHhcCCCCC---cEEe--------cCcHHHHH
Confidence 456665 66889999999998653 46899999999976411 1 1111111111 0111 11244555
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--- 186 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--- 186 (257)
.+..+ ..++|+|+||||+....... .. ...+|.++.++.+......... +...+.+++
T Consensus 68 ~l~~l---~~~yD~viiD~~~~~~~~~~-~~---------l~~ad~viiv~~~~~~~~~~~~------~~~~l~~~~~~~ 128 (206)
T 4dzz_A 68 GIRKD---LADYDFAIVDGAGSLSVITS-AA---------VMVSDLVIIPVTPSPLDFSAAG------SVVTVLEAQAYS 128 (206)
T ss_dssp THHHH---TTTSSEEEEECCSSSSHHHH-HH---------HHHCSEEEEEECSCTTTHHHHH------HHHHHHTTSCGG
T ss_pred HHHHh---cCCCCEEEEECCCCCCHHHH-HH---------HHHCCEEEEEecCCHHHHHHHH------HHHHHHHHHHhC
Confidence 55543 34699999999986643221 11 1235789999988765411111 122222221
Q ss_pred --hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 187 --~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
....+|+||++.-... ...+.+.+++.
T Consensus 129 ~~~~~~vv~N~~~~~~~~-----~~~~~~~l~~~ 157 (206)
T 4dzz_A 129 RKVEARFLITRKIEMATM-----LNVLKESIKDT 157 (206)
T ss_dssp GCCEEEEEECSBCTTEEE-----EHHHHHHHHHH
T ss_pred CCCcEEEEEeccCCCchH-----HHHHHHHHHHc
Confidence 1237899999854321 24455556553
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.2e-07 Score=75.74 Aligned_cols=34 Identities=35% Similarity=0.345 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+|||||+|+|+ +.+.+.+.+.+|.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~ 154 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGI 154 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHH----TSCCC--------
T ss_pred ceEEEEecCCCchHHHHHHHh----cCceeecCCCCCe
Confidence 468999999999999999999 4444555566664
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-07 Score=84.63 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|+|++|||||||+|.|+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34799999999999999999995
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-07 Score=81.26 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|+|||||+|+|++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999985
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=82.44 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCcEEEEccccccccCcc--------------cCCCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSH--------------ENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++..+.+.++.+.|+.+. ......+|.++|+|++|||||||++.|+..
T Consensus 7 ~~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 7 SPGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 344677888888776532 123567899999999999999999999853
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=82.61 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+-||||||-.+.....+ +...-+|.+|.||||..+....... +.....+.+.+-++++||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~--------~aLr~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVE--------RSLRVLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHH--------HHHHHhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEcccccc
Confidence 45577999999877644332 1122479999999999877654432 2334455677899999999997
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
..+
T Consensus 151 ~a~ 153 (709)
T 4fn5_A 151 GAN 153 (709)
T ss_dssp TCC
T ss_pred Ccc
Confidence 654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=69.13 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCEEEEecCCCCCcHH--H-HHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHH-----hhcCEE
Q 025133 121 LDHILLETTGLANPAP--L-ASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI-----AFADVV 191 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~--~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql-----~~~~vi 191 (257)
..+.+.||+|...... + ... .+ ..++.+++|+|.... ...... +...+..+ ..+.++
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~-----yy---r~a~~~IlV~Ditd~~~~~~~~------l~~~l~~~~~~~~~ipill 111 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSER-----LF---KSVGALVYVIDSQDEYINAITN------LAMIIEYAYKVNPSINIEV 111 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHH-----HH---TTCSEEEEECCCSSCTTHHHHH------HHHHHHHHHHHCTTCEEEE
T ss_pred EEEEEEECCCchhccchhhhhhh-----hc---cCCCEEEEEEECCchHHHHHHH------HHHHHHHHhhcCCCCcEEE
Confidence 4578999999765421 1 111 11 246789999999863 111111 11122221 234577
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHH-HHhCC------CCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEI-HEINS------LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l-~~~~~------~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.||+|+.+++++......+.... +++.. ....+ .|++. .++.+.+..+
T Consensus 112 vgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~i 168 (331)
T 3r7w_B 112 LIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRI 168 (331)
T ss_dssp ECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHH
T ss_pred EEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHH
Confidence 889999987643111112222222 12222 34455 46655 5776665544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-06 Score=73.84 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45579999999999887777666554 7999999999999999999863
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=59.24 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=76.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.+..+..|+||||+.-.|... ..| ++.++..|+.... . ..... .+ ++...+ ..+ .+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~--~-~~~~~-~~---------l~~~vi----~~~---~l~ 62 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA--T-GWGKR-GS---------LPFKVV----DER---QAA 62 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH--H-HHHHH-SC---------CSSEEE----EGG---GHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH--H-HHhcC-CC---------CCccee----CHH---HHH
Confidence 344677899999999999753 558 9999998886411 1 11110 00 000001 111 233
Q ss_pred HHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCE
Q 025133 113 QLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~v 190 (257)
.+ ...+|+|+||||+. ....... . ...+|.++.++.+....-..-. .+...+.++ .....
T Consensus 63 ~l---~~~yD~viiD~p~~~~~~~~~~-~---------l~~aD~viiv~~~~~~~~~~~~-----~~~~~l~~~~~~~~~ 124 (209)
T 3cwq_A 63 KY---APKYQNIVIDTQARPEDEDLEA-L---------ADGCDLLVIPSTPDALALDALM-----LTIETLQKLGNNRFR 124 (209)
T ss_dssp HH---GGGCSEEEEEEECCCSSSHHHH-H---------HHTSSEEEEEECSSHHHHHHHH-----HHHHHHHHTCSSSEE
T ss_pred Hh---hhcCCEEEEeCCCCcCcHHHHH-H---------HHHCCEEEEEecCCchhHHHHH-----HHHHHHHhccCCCEE
Confidence 32 35689999999997 5443221 1 1235789999988754321110 012233332 23456
Q ss_pred EEEeCCCCCC-cCCCcchHHHHHHHHHH
Q 025133 191 VILNKVDLVS-PERSGDSLDELEKEIHE 217 (257)
Q Consensus 191 ivlNK~D~~~-~~~~~~~l~~~~~~l~~ 217 (257)
+|+|+.+.-. .. ...+.+.+++
T Consensus 125 vv~N~~~~~~~~~-----~~~~~~~l~~ 147 (209)
T 3cwq_A 125 ILLTIIPPYPSKD-----GDEARQLLTT 147 (209)
T ss_dssp EEECSBCCTTSCH-----HHHHHHHHHH
T ss_pred EEEEecCCccchH-----HHHHHHHHHH
Confidence 8899998654 21 3455566665
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-06 Score=70.43 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..-
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999887677666554 7999999999999999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.5e-05 Score=64.05 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=86.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+++++|++||||||+++.|... ..+.++.+...+... ......+.... ..++.+ . ...... ........
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r-~~a~~ql~~~~~~~~i~~---v-~q~~~~-~~~~~~v~ 173 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR-AAASDQLEIWAERTGCEI---V-VAEGDK-AKAATVLS 173 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC-HHHHHHHHHHHHHHTCEE---E-CCC--C-CCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc-hhHHHHHHHHHHhcCceE---E-EecCCc-cCHHHHHH
Confidence 348999999999999999999763 236677777666432 11000000000 000000 0 000000 00000122
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+.+.... ..+.+.+++||.|+.+. ......+. ....+.. ....+.+++|+||....+.... ...+.+
T Consensus 174 e~l~~~~--~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-------~~~~~~ 244 (302)
T 3b9q_A 174 KAVKRGK--EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-------AREFNE 244 (302)
T ss_dssp HHHHHHH--HTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-------HHHHHH
T ss_pred HHHHHHH--HcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-------HHHHHH
Confidence 2222111 23567899999997642 22222221 0001111 1234567899998776654332 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
-....+++++|.|.... ............ .+|..-..++. ++++
T Consensus 245 ~~g~t~iiiThlD~~~~------~g~~l~~~~~~~--~pi~~i~~Ge~-~~dl 288 (302)
T 3b9q_A 245 VVGITGLILTKLDGSAR------GGCVVSVVEELG--IPVKFIGVGEA-VEDL 288 (302)
T ss_dssp HTCCCEEEEECCSSCSC------THHHHHHHHHHC--CCEEEEECSSS-GGGE
T ss_pred hcCCCEEEEeCCCCCCc------cChheehHHHHC--CCEEEEeCCCC-hhhc
Confidence 22357899999886532 244444444443 24554444432 4443
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-06 Score=78.76 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+..+++|+|+||+|||||+|+|++
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 34667899999999999999999995
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-06 Score=70.90 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999887666665543 7999999999999999999853
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.3e-05 Score=65.58 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=31.6
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+..+++|+|. +|+||||+.-.|... ..|+++.+|..|+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4568888876 899999999998653 46899999998865
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-06 Score=71.38 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=39.5
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 479999999999998877766554 799999999999999999976
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-06 Score=71.52 Aligned_cols=45 Identities=38% Similarity=0.474 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..-
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999887766655443 7999999999999999999853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.6e-06 Score=72.08 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=38.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.+.- +++|+|++|||||||++.|..-
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999887777666554 7999999999999999999853
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.2e-05 Score=66.98 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=86.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCc-eeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGC-ICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gc-icc~~~~~~ 107 (257)
.-+++++|++||||||+++.|... ..+.++.+...+... ......+.... ..++.+ . ..... . ......
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r-~~a~eql~~~~~r~~i~~---v-~q~~~~~--~p~~tv 229 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR-AAASDQLEIWAERTGCEI---V-VAEGDKA--KAATVL 229 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC-HHHHHHHHHHHHHHTCEE---E-CCSSSSC--CHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc-cchhHHHHHHHHhcCeEE---E-Eeccccc--ChhhhH
Confidence 348999999999999999999763 236677777666432 11000000000 000000 0 00000 0 000011
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhccc-ccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWL-DDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~-~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
.+.+.... ..+.+.+++||.|..+. ......+.. ...+. -....+.+++|+|+...++.... ...+.
T Consensus 230 ~e~l~~~~--~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-------~~~~~ 300 (359)
T 2og2_A 230 SKAVKRGK--EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-------AREFN 300 (359)
T ss_dssp HHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-------HHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-------HHHHH
Confidence 22222111 23567899999997653 233222210 00111 01234567999998766654332 11122
Q ss_pred HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 184 ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
+-....+++++|.|.... ............ .+|.....++ .+++|
T Consensus 301 ~~~g~t~iiiThlD~~~~------gG~~lsi~~~~~--~pI~~ig~Ge-~~~Dl 345 (359)
T 2og2_A 301 EVVGITGLILTKLDGSAR------GGCVVSVVEELG--IPVKFIGVGE-AVEDL 345 (359)
T ss_dssp HHTCCCEEEEESCTTCSC------THHHHHHHHHHC--CCEEEEECSS-SGGGE
T ss_pred HhcCCeEEEEecCccccc------ccHHHHHHHHhC--CCEEEEeCCC-ChHhc
Confidence 222357899999886533 233334444433 2455444443 24544
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-06 Score=71.21 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999877777666553 799999999999999999985
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-06 Score=70.81 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=37.4
Q ss_pred cEEEEccccccccCcc-cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++++|++.. .+.+.++- +++|+|++|||||||++.|..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999997643 66665443 799999999999999999975
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-05 Score=63.76 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=31.6
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
...+++|+|. +|+||||+.-.|... ..|+++.+|..|+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4568888886 799999999998653 45899999998873
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-06 Score=71.17 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+++.|+++..+.+.+.- +++|+|++|||||||++.|..-
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999887777666553 7999999999999999999853
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.6e-05 Score=61.22 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=29.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
++|+|..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 455999999999999999753 56899999999885
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-06 Score=69.61 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999887677665543 799999999999999999985
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.3e-06 Score=70.57 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999887777665543 7999999999999999999853
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6.9e-06 Score=69.50 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++++|.+|+|||||+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 4689999999999999999994
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.86 E-value=6.8e-06 Score=68.69 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999 555566655443 7999999999999999999853
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.5e-06 Score=68.21 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=36.8
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++ +..+.+.+.. +++|+|++|||||||++.|+..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999973 4556655543 7999999999999999999763
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.1e-06 Score=67.76 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++.|++ ..+.+.++- +++++|++|||||||++.|...
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999987 766666554 6999999999999999999853
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.8e-06 Score=71.49 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCcEEEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++++++++| ++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45679999999999 776666655443 799999999999999999975
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00014 Score=62.10 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=77.7
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCCcc-c----ccch-----hhhhcCC--CCcee----eee
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-I----GVER-----AMINEGE--GGALV----EEW 91 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~-~----~~d~-----~~~~~~~--~~~~~----~~~ 91 (257)
+..+++|+|. +|+||||+.-.|... ..|+++.+|..|+... . +.+. ..+.... ..... ...
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 3456766665 899999999998653 5689999999987530 1 1110 0011000 00000 011
Q ss_pred eecCCCceeec-----cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 92 VELANGCICCT-----VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 92 ~~l~~gcicc~-----~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
..++.|..... ....+...+..+ ...+|+||||||+.......... ...+|.+++|+.+....
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l---~~~yD~VIIDtpp~~~~~da~~l---------~~~aD~vllVv~~~~~~ 238 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWA---SKNYDLVLIDTPPILAVTDAAIV---------GRHVGTTLMVARYAVNT 238 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHH---HHHCSEEEEECCCTTTCTHHHHH---------TTTCSEEEEEEETTTSB
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHH---HhCCCEEEEcCCCCcchHHHHHH---------HHHCCeEEEEEeCCCCc
Confidence 22222222111 012333333333 23689999999996543222111 12358899999887432
Q ss_pred HH-HhhhccCCChhHHHHHHhh-cCEEEEeCCCCCC
Q 025133 167 FQ-IDKYRHLSSYPEAIHQIAF-ADVVILNKVDLVS 200 (257)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~~~ 200 (257)
.. ... ..+.+.+.+. ..-+|+||++.-.
T Consensus 239 ~~~~~~------~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 239 LKEVET------SLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHH------HHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHH------HHHHHHhCCCCEEEEEEcCccccc
Confidence 21 111 1223333332 3468899987554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.4e-06 Score=72.36 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=39.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+++.|++...+.+.+.- +++++|++|||||||++.|..-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 68999999999988777766554 7999999999999999999863
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.3e-06 Score=68.65 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=37.9
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ ++..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999998 66666665543 7999999999999999999864
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=68.68 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=37.7
Q ss_pred cEEEEccccccccC---cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++.|++ +..+.+.++- +++|+|++|||||||++.|...
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999976 4566655443 7999999999999999999863
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00045 Score=56.83 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=29.8
Q ss_pred eeEEEEE-ecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCC
Q 025133 32 VGVTVIT-GFLGAGKSTLVNYILNG--KH-GKRIAVILNEFG 69 (257)
Q Consensus 32 ~~vv~i~-G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g 69 (257)
..++.|+ +..|+||||+.-.|... .. |+++.++..|++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4555555 56899999999999653 45 999999999976
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.2e-05 Score=66.69 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=36.7
Q ss_pred EEEEcccccccc--CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ ++..+.+.+.- +++|+|++|||||||++.|+..
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999995 34556555443 7999999999999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-05 Score=71.19 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCCcEEEEccccccc--cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.-.+++++++++| ++...+.+.++- +++++|++|||||||++.|..
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 344579999999999 555666666544 799999999999999999985
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.7e-06 Score=69.00 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=36.2
Q ss_pred EEEEcccccccc--C---cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS--N---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~--~---~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ + +..+.+.+.- +++++|++|||||||++.|..-
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 588999999997 3 3455555443 7999999999999999999753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=67.82 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=36.3
Q ss_pred EEEEccccccc--cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999 345566655443 7999999999999999999853
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00039 Score=58.26 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++.
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445567889999999998653 458999999999764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.75 E-value=1.1e-05 Score=71.73 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++|++...+++.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 48999999999987777766554 799999999999999999976
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=8.7e-06 Score=67.73 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=35.0
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 37889999999753 245555443 799999999999999999985
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00024 Score=59.35 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=30.6
Q ss_pred ceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+.+++.|+ +..|+||||+.-.|... ..|+++.++..|+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34567665 56799999999998653 45899999999875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.6e-05 Score=67.10 Aligned_cols=46 Identities=13% Similarity=0.328 Sum_probs=37.0
Q ss_pred cEEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999863 355554443 7999999999999999999853
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.72 E-value=1.3e-05 Score=70.95 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=36.7
Q ss_pred CCCcEEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
....+++++++++.|++. ..+.+.++- +++|+|++|||||||++.|..
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 344579999999999753 245555443 799999999999999999976
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=70.33 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 48899999999887666655443 7999999999999999999763
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00032 Score=58.58 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=28.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3445677899999999999653 45899999999874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-05 Score=70.50 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 58899999999887666655543 7999999999999999999863
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.5e-05 Score=70.41 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 48899999999887666655443 799999999999999999976
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00077 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCcceeEEEE-EecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 025133 28 DDVSVGVTVI-TGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (257)
Q Consensus 28 ~~~~~~vv~i-~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~ 70 (257)
.+.+.++++| .+..|+||||+.-.|... ..|+++.++..|++.
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQA 67 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTTC
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3445566655 567889999999988542 268999999999764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-05 Score=68.12 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=36.9
Q ss_pred cEEEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-.+++++++++|++ +..+.+.++- +++|+|++|||||||++.|+.
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 35999999999964 4556655443 799999999999999999976
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-05 Score=70.02 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=37.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 48999999999887666655443 799999999999999999975
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.64 E-value=1.8e-05 Score=69.67 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=36.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|++. .+.+.+.- +++++|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 7889999999876 66655543 7999999999999999999863
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00082 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=28.8
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++.| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45555 456899999999999653 45899999999874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=70.10 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=37.0
Q ss_pred EEEEccccccccCcc--cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++.. .+.+.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 488999999998866 66555443 799999999999999999976
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.57 E-value=2.3e-05 Score=66.36 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=35.2
Q ss_pred EEEEccccccccC----cccCCCccee----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSN----SHENDDVSVG----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++ +..+.+.+.- +++++|++|||||||++.|..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999976 4555544333 799999999999999999985
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.1e-05 Score=64.59 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=33.5
Q ss_pred EEEccccccccCcccCCCcce----eEEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSV----GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~----~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|++ .+.+.+. -+++++|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999975 2444433 47999999999999999999863
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=3.6e-05 Score=69.88 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++.+|.|+|++++|||||+|.|+.
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 456788999999999999999999985
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00084 Score=56.94 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=32.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++++|+|..|+||||+.-.|... ..|+++.++..|++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 467777899999999999999653 458999999999763
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.001 Score=55.11 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=29.0
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
++++| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45555 556889999999998653 45899999999983
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00094 Score=55.83 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=31.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++.|+|..|+||||+.-.|... ..|+++.++..|++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 56777899999999999998653 568999999999763
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.5e-05 Score=62.28 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=32.8
Q ss_pred EEEccccccccCcccCCC-----cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++.|+....+.. .+-.++++.|++|||||||++.|..
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 334677888876555444 3334899999999999999999985
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.002 Score=54.60 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=28.8
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
.+++|+ +..|+||||+.-.|... ..|+++.++..|+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 356554 66899999999999653 4589999999998
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=61.64 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=32.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++. ..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6888999887 345544443 7999999999999999999853
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.0
Q ss_pred eEEEEEe---cCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITG---FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G---~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++|++ ..|+||||+.-.|... ..|+++.++..|+..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3555554 8999999999998653 468999999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00017 Score=67.64 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=37.5
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-.++++|++++|++ +..+.+.+.. +++++|++|||||||++.|++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999975 4566665543 799999999999999999986
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00016 Score=71.41 Aligned_cols=47 Identities=23% Similarity=0.133 Sum_probs=38.1
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.-..+...++++.|+++..+.+.++- +++++|++|||||||++.|..
T Consensus 432 ~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 432 EGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp SSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34456666999999987777666554 799999999999999999983
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=56.83 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=66.06 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.++++|++++|++ +..+.+.+.- +++++|++|||||||++.|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 35899999999974 4556555443 7999999999999999999863
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00038 Score=65.54 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=37.4
Q ss_pred EEEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|++ +..+.+.+.. +++++|++|||||||++.|++.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999975 4466666543 7999999999999999999863
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
...+-.+++|+||+|||||||++.|+...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34455689999999999999999998753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+++.|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=54.76 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0004 Score=54.62 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=28.1
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+ +.|++....-.....+++|+|++||||||++.+|.
T Consensus 7 l~i~nf-~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 7 LELKGF-KSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEESB-GGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHH
T ss_pred EEEeCe-EeecCccEEEecCCCcEEEECCCCCCHHHHHHHHH
Confidence 455665 34432233233444589999999999999999995
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=54.67 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=19.0
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~L 52 (257)
++++++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00023 Score=66.19 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred ccccccccCcccCCC--ccee----EEEEEecCCCcHHHHHHHHHc
Q 025133 15 DETTHEFSNSHENDD--VSVG----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~--~~~~----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.+|+|+. ..++- .++| +++++|++|||||||++.|..
T Consensus 3 ~~~~~~~~~-~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 3 GEVIHRYKV-NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCEEEESST-TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCceecCC-CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899998 33443 3333 899999999999999999985
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00027 Score=66.45 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=36.6
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|.+ +..+.+.+.. +++++|++|||||||++.|++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999954 4456655443 7999999999999999999863
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00025 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=49.17 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred cCCCcceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 26 ENDDVSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 26 ~~~~~~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
...+.+.+.++|+|. +|+|||++.-.|+.. +.|.+++...
T Consensus 15 ~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 15 ENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp ----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 344556788999998 999999999988764 5588888875
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.04 Score=44.32 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.7
Q ss_pred eEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
++++|+| ..|+||||+.-.|... ..|+++.++.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3556666 5899999999999753 4588988863
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=55.41 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|||||||++.|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=4.9e-05 Score=65.65 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred EEEccccccccCcccCCCc--ce---eEEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDV--SV---GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~---~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.+.|+ ...+.+. .+ .+++|+|++|||||||++.|+.
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 67789999887 3444333 22 2899999999999999999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0003 Score=65.93 Aligned_cols=45 Identities=27% Similarity=0.481 Sum_probs=36.6
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|++ +..+.+.+.. .++++|++|||||||++.|++.
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5899999999975 3455555443 7999999999999999999863
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=56.76 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++|+|++|||||||++.|+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0003 Score=60.22 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=25.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++. .+..+.+.+.- +++|+|++|||||||++.|...
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5788999875 23455554443 7999999999999999999763
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=54.00 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=31.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+-.+++++|++|+||||++-.++.+ ..+.++.++....+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 3468999999999999988887653 45788888876654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=55.56 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=27.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
+++++|+|++|||||||++.|+.. ..+.+.+.+..+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 578999999999999999999864 2355567666553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00038 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|+|++|||||||++.|...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00033 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00042 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
..+++|+||+||||||+++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00038 Score=56.22 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=27.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEecC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE 67 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~--~~~~v~ii~~~ 67 (257)
+..+++|+|++|||||||++.|.... .|...+.+..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 34589999999999999999997531 13456777654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00042 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.+++|+||+|||||||++.|+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00043 Score=54.27 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.1
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll 53 (257)
.+++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999999865
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00049 Score=54.23 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=25.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii 64 (257)
++++|.|++||||||+.+.|.+. ..+..+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 57999999999999999999764 234445555
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+.+.|.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0041 Score=54.71 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.++.++..+..... .-...+........+ .+.....++...+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~-~ra~rlgv~~~~l~i----------~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP-VYAKNLGVDLKSLLI----------SQPDHGEQALEIV 131 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-HHHHHHTCCGGGCEE----------ECCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch-HHHHHcCCchhhhhh----------hhccCHHHHHHHH
Confidence 8999999999999999999764 34677888877643210 000001000000000 0112233455555
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc
Q 025133 112 EQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
..++. ...+++++||......+
T Consensus 132 ~~l~~-~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DELVR-SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHH-TSCCSEEEEECTTTCCC
T ss_pred HHHhh-hcCCCeEEehHhhhhcC
Confidence 55543 46799999998775544
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00045 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCC
Q 025133 35 TVITGFLGAGKSTLVNYILNGKH 57 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~ 57 (257)
++|+||+|||||||+++|+...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987644
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00046 Score=64.18 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.6
Q ss_pred CcEEEE-ccccccccCcc-cCCCcc-e---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRI-DETTHEFSNSH-ENDDVS-V---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~-~~~~~~-~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++..++ ++++++|++.. .+.+.+ + -+++++|++|||||||++.|...
T Consensus 18 ~~~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 18 SHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ------CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445666 68999998753 454443 2 28999999999999999999863
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00016 Score=60.61 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred EEEEccc-cccc-cCcccCCCc-----c---eeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDET-THEF-SNSHENDDV-----S---VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~-~~~~-~~~~~~~~~-----~---~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++ ++.| ++...+.+. . -..++++|++||||||+.+.|..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5888999 9998 554444332 2 45899999999999999999974
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00036 Score=68.94 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=37.4
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|+++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999975 3455555443 7999999999999999999864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00096 Score=53.59 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
..+++|+|++||||||+++.|....+ .+.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence 34899999999999999999985311 46677655
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00062 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999985
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=54.89 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=26.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
.+++|+|++|||||||++.|.... +.+++++..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~ 41 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL-GERVALLPMDH 41 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCc
Confidence 479999999999999999997521 01377777653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00051 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
+..+++|+|++||||||+++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44578999999999999999998653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00057 Score=56.70 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|++||||||+++.|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0006 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0002 Score=62.88 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=36.5
Q ss_pred CcEEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-.++.+++++.|. +..+++.. ++ +++|+|++|+|||||++.|++.
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34577889999997 44555555 44 7999999999999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00048 Score=56.23 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH 57 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~ 57 (257)
+++|+|++|||||||++.|+...+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 789999999999999999986433
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00079 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+++.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00058 Score=64.40 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred ccccccccCcc-cCCCcc-e---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSH-ENDDVS-V---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~-~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++|++.. .+.+.+ + -+++++|++|||||||++.|...
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 88999998753 444443 2 28999999999999999999863
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00091 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0039 Score=54.35 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=34.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc--cCCCCeEEEEecCCCc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGE 70 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~--~~~~~~v~ii~~~~g~ 70 (257)
....+++++|..|+||||+.-.|.. +..|+++.++..|+..
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 3456889999999999999999865 3569999999999653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00086 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00085 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00097 Score=52.62 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+..++++.|++||||||+++.|... ..+.++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4468999999999999999999753 2344554543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0039 Score=54.67 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=50.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.++.++..+... +...... -+...+..... ......++...+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~----~~~~a~~--lG~~~~~l~i~-----~~~~~e~~l~~~ 131 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL----DPEYAKK--LGVDTDSLLVS-----QPDTGEQALEIA 131 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCEEE-----CCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc----CHHHHHH--cCCCHHHeEEe-----cCCCHHHHHHHH
Confidence 8999999999999999998753 447788888877432 1111110 00000000000 011223344444
Q ss_pred HHHHHhcCCCCEEEEecCCCCC
Q 025133 112 EQLVQRKERLDHILLETTGLAN 133 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~ 133 (257)
..+.. ..++++++||.+....
T Consensus 132 ~~l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHT-TTCCSEEEEECGGGCC
T ss_pred HHHHh-cCCCCEEEEcChHhhc
Confidence 44442 4579999999988554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00099 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00084 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|.|++||||||+++.|.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...+..+++|+|++||||||+.+.|.+.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445678999999999999999999853
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=53.33 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
+++++|++|+|||||+..++. ..+.++.++..+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 899999999999999999987 4577888888765
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00055 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.9
Q ss_pred eEEEEEecCCCcHHHHHHHHH-cc
Q 025133 33 GVTVITGFLGAGKSTLVNYIL-NG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll-~~ 55 (257)
.+++|+|++||||||+++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999998 64
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00086 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 48999999999999999999863
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0059 Score=53.89 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CC--CCceeeeeeecCCCceeeccchhHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GE--GGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~--~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
++.|.|++|+|||||+..++.. ..+.+++++..+... +...... +. ....+ .......++.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~----~~~~a~~~g~d~~~l~i----------~~~~~~e~~l 141 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARALGVNTDELLV----------SQPDNGEQAL 141 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHTTCCGGGCEE----------ECCSSHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh----hHHHHHHcCCCHHHcee----------ecCCcHHHHH
Confidence 7899999999999999998753 347789999987542 1111110 00 00100 0011234455
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN 133 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~ 133 (257)
..+..+.. ..++++|+||..+...
T Consensus 142 ~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 142 EIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHHHHh-cCCCCEEEEeChHHhc
Confidence 55555543 4679999999998554
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=56.99 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=27.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc-C---CCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG-K---HGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~-~---~~~~v~ii~~~ 67 (257)
.-+++|+|++|||||||++.|... . .+.++.++..|
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 348999999999999999998653 1 24567777765
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00097 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++++|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|++|||||||++.|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999975
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00087 Score=54.50 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=25.6
Q ss_pred cccCcccCCCcce-eEEEEEecCCCcHHHHHHHHHc
Q 025133 20 EFSNSHENDDVSV-GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 20 ~~~~~~~~~~~~~-~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.|+++..+++... .+++++|++|||||||++.|..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444444444433 3899999999999999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=61.15 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCcEEEEccccccccCcccCCCc-----ceeEEEEEecCCCcHHHHHHHHHcc-CC-------CCeEEEEecCC
Q 025133 8 PPLAVRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG-KH-------GKRIAVILNEF 68 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gsGKSTli~~Ll~~-~~-------~~~v~ii~~~~ 68 (257)
.+.+++++++++.|++.. +... +--+++|+|++|||||||++.|... .+ ..+++++..++
T Consensus 354 ~~~~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~ 426 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYI 426 (607)
T ss_dssp CCEEEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSC
T ss_pred CceEEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCc
Confidence 356799999999987632 2221 1238999999999999999999863 11 23566665553
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=52.45 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=26.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
+..+++|+|++||||||+++.|... ..+.++.++..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458999999999999999999753 124455555433
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0018 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++++|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00037 Score=63.15 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=36.4
Q ss_pred CcEEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-.++++++++.|. +..++++. .+ +++|+|++|+|||||++.|.+.
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34577899999997 44555555 44 7999999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|+|++||||||+.+.|.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=54.69 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=28.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||++.|+.. ..|.++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 8999999999999999999753 3366788887664
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
+++++|++|||||||++.++.. ..+.++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 8999999999999999999753 2356777777664
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=54.97 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+|++||||||+.+.|...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57999999999999999999753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++++|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0073 Score=53.10 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=51.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.+++++..+... +......- +...+...... ......+...+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~----~~~~a~~~--g~~~~~l~i~~-----~~~~e~~~~~~ 133 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLLCSQ-----PDTGEQALEIC 133 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc----cHHHHHHc--CCChhheeeeC-----CCCHHHHHHHH
Confidence 8999999999999999998753 347788888876432 11111110 00000000000 11123444444
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc
Q 025133 112 EQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
..+.. ..++++|+||..+...+
T Consensus 134 ~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHh-ccCCCEEEEcCHHHhcc
Confidence 44443 46799999999996554
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.001 Score=68.12 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|+.++|.++ +++++.+.. .++|+|++|||||||++.|++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 59999999999654 355665544 699999999999999999986
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=60.43 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCcEEEEccccccccCccc-CCCcce---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHE-NDDVSV---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+..++++++++.|++... ..+..+ -+++|+|++|||||||++.|...
T Consensus 266 ~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999998877332 112222 38999999999999999999763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=62.19 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccccccccCccc-CCCcc----eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSHE-NDDVS----VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~----~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+|++... +.... --+++++|++|||||||++.|...
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 456778876432 22211 228999999999999999999863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.001 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+|++||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0022 Score=57.68 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEccccccccCcccCCC---cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 13 RIDETTHEFSNSHENDD---VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
.++++.+.++....+.+ .+-.+++|+|++|||||||++.|+.. ....++.++..
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 34555555443322221 23458999999999999999999864 22345555543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|.|++||||||+.+.|.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|++|||||||++.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999999975
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=56.74 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=28.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~ 68 (257)
.-+++|+|++|||||||++.|... ..| .+++++..++
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 348999999999999999999753 223 5688887664
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.++|+|++||||||+.+.|..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCe
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKR 60 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~ 60 (257)
.+++|+|++||||||+.+.|.+.-.|.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~ 32 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANT 32 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCc
Confidence 4799999999999999999987532333
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=60.73 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred CCcEEEEccccccccCcccCCCc-----ceeEEEEEecCCCcHHHHHHHHHcc-CC-------CCeEEEEecCC
Q 025133 8 PPLAVRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG-KH-------GKRIAVILNEF 68 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gsGKSTli~~Ll~~-~~-------~~~v~ii~~~~ 68 (257)
.+..++++++++.|++.. +... +--+++|+|++|||||||++.|... .+ ..+++++..++
T Consensus 284 ~~~~l~~~~l~~~~~~~~-l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp CCEEEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred CCeEEEEeeEEEEECCEE-EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence 356799999999887632 2221 2238999999999999999999864 21 23566666554
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|.|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|+|++|+|||||+|.|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 8999999999999999999953
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0069 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.|++|+|||||++.|...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|+|++||||||+.+.|.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.025 Score=49.83 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 28 DDVSVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 28 ~~~~~~vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+.+..+++|+| ..|+||||+.-.|... ..|+++.++..|
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344566776664 8999999999988653 348899999987
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++|||||||+|.|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 389999999999999999998 5
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++++|++||||||+.+.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999753
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=53.31 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=24.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+++|.|++||||||+++.|... ..+.++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6899999999999999999764 2244444443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0029 Score=58.37 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~ 65 (257)
.++|+|++|||||||++.|+.. .+..++..+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 5899999999999999999875 3444444443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=57.35 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++.|++|+|||||++.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|+|++||||||+.+.|.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++|+|++||||||+.+.|.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3458999999999999999999864
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|.|++||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0026 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-..+++.|++|+|||||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4558899999999999999999763
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.018 Score=49.72 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=33.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+..+++|+|.=|+||||+.-.|... ..|+|+.++-.|++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4569999999999999999988653 56999999999974
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=55.46 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc-C---CCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG-K---HGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~-~---~~~~v~ii~~~ 67 (257)
-+++|+|++|||||||++.|... . .+.++.++..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 48999999999999999999763 2 23456665543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0027 Score=51.89 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=28.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++|.|++|+|||||+..++.. .++.++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 8999999999999998887642 34778888887643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|++||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0004 Score=58.56 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=51.9
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 228 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~ 228 (257)
...++|.++.|+|+.......... +. .+ ..+.++|+||+|+++.+. .+.+.+.+++.+ .++++|+
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll---~k~~iivlNK~DL~~~~~----~~~~~~~~~~~g--~~v~iSa 82 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYG-----VD-FS---RKETIILLNKVDIADEKT----TKKWVEFFKKQG--KRVITTH 82 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTT-----SC-CT---TSEEEEEEECGGGSCHHH----HHHHHHHHHHTT--CCEEECC
T ss_pred HHhhCCEEEEEeeCCCCCcCcChH-----HH-hc---CCCcEEEEECccCCCHHH----HHHHHHHHHHcC--CeEEEEC
Confidence 445789999999998654332111 11 11 678899999999997532 445555555432 2237888
Q ss_pred cCCcChhhhhcCcc
Q 025133 229 RCQVDLSEVLNCRA 242 (257)
Q Consensus 229 ~~~~~~~~l~~~~~ 242 (257)
.++.++++|+....
T Consensus 83 ~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 83 KGEPRKVLLKKLSF 96 (262)
T ss_dssp TTSCHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHH
Confidence 88888888876553
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.011 Score=51.93 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.6
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++| .+..|+||||+.-.|... ..|+++.+|..|+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 44444 477899999999998642 469999999999763
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|.|+|||||+|....|.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0025 Score=65.29 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=36.5
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|+.++|.++ ..+.+.+.. .++|+|++|||||||++.|++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 58999999999753 345555443 7999999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999975
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0031 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++|||||||++.|+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999975
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|+|++||||||+++.|.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999973
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=54.83 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=52.3
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Ee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RS 227 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s 227 (257)
....+|.+++|+|+........... .+...+.....+.++|+||+|+.++.+. ...+.+....++.+ .+++ +|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~---~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g--~~~~~~S 149 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLD---NMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWISIYRDAG--YDVLKVS 149 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHH---HHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT--CEEEECC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHH---HHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC--CeEEEEE
Confidence 3568899999999985321111100 0222233345677999999999875310 01344444444443 3455 79
Q ss_pred ecCCcChhhhhcCc
Q 025133 228 VRCQVDLSEVLNCR 241 (257)
Q Consensus 228 ~~~~~~~~~l~~~~ 241 (257)
++++.|+++|+...
T Consensus 150 A~~g~gi~~L~~~l 163 (302)
T 2yv5_A 150 AKTGEGIDELVDYL 163 (302)
T ss_dssp TTTCTTHHHHHHHT
T ss_pred CCCCCCHHHHHhhc
Confidence 99999999888665
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0034 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++|||||||++.|+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=65.11 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=36.8
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|+++ ..+.+.+.. .++++|++|||||||++.|++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999753 355655443 7999999999999999999863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+-+++++|++||||||+.+.|..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0044 Score=63.33 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.4
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++.++|+++ ..+++.+.- +++|+|++|||||||++.|.+.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999764 356666554 7999999999999999999863
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=54.43 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred ccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 148 ~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
....++|.++.|+|+........ + .+.++ ..+.++|+||+|+++.+. .+.+.+++++.+. ..+.
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~--------~-~l~~~l~~kp~ilVlNK~DL~~~~~----~~~~~~~~~~~g~-~~i~ 84 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRN--------P-MIEDILKNKPRIMLLNKADKADAAV----TQQWKEHFENQGI-RSLS 84 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSC--------H-HHHHHCSSSCEEEEEECGGGSCHHH----HHHHHHHHHTTTC-CEEE
T ss_pred HHHhhCCEEEEEEeCCCCCccCC--------H-HHHHHHCCCCEEEEEECcccCCHHH----HHHHHHHHHhcCC-cEEE
Confidence 34567899999999986433211 1 22222 467899999999997532 3444454543222 2345
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|+..+.++++++...
T Consensus 85 iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 85 INSVNGQGLNQIVPAS 100 (282)
T ss_dssp CCTTTCTTGGGHHHHH
T ss_pred EECCCcccHHHHHHHH
Confidence 7888888988876543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999975
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0093 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.|++|+|||++++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0053 Score=52.56 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=50.5
Q ss_pred ceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-
Q 025133 150 AVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI- 225 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~- 225 (257)
...+|.+++|+|+.... ..++. +...+.+...+.++|+||+|+.+..+ .++...+.+..+....++
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~------~l~~~~~~~~piilv~NK~DL~~~~~----v~~~~~~~~~~~~~~~~~~ 151 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDEDD----LRKVRELEEIYSGLYPIVK 151 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHTTTSCEEE
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHCCCCEEEEEeHHHcCCchh----HHHHHHHHHHHhhhCcEEE
Confidence 45789999999998532 11121 12222233457789999999986532 233444444443213454
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++...
T Consensus 152 ~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 152 TSAKTGMGIEELKEYL 167 (301)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EECCCCcCHHHHHHHh
Confidence 7999999999887654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0011 Score=57.16 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|+|||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999999984
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+++.|+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.013 Score=46.45 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEec
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILN 66 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~ 66 (257)
++|+|.++||||||...|... +.++.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc--CCCeEEEec
Confidence 789999999999999999865 555555554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.00056 Score=57.75 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred ccccccccCcccCCCc----ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~----~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.+.|+....+.+. ..+ +++.|++|+|||||++.|...
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4555555554333222 222 899999999999999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++|||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3899999999999999999985
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+..+++|+|++|||||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998653
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++|+|++||||||+.+.|.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0032 Score=56.63 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=31.1
Q ss_pred EEEEccccccccCcccCCCcc-eeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVS-VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++|+ +.|++...+. .. ..+++|+|++||||||+++++..
T Consensus 6 ~l~~~~~-~~~~~~~~~~-~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 6 GLELSNF-KSYRGVTKVG-FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEESC-SSCCSEEEEE-CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCE-EEECCceeEE-ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677888 6776533222 32 45899999999999999999853
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|+|++||||||+.+.|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=48.02 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=26.9
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+. .|.+.. -....++.+|+|+.||||||++.+|.
T Consensus 6 l~i~nf~-~~~~~~--i~f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 6 VTVKNFR-SHSDTV--VEFKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEESBT-TBSSEE--EECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCcc-cCcceE--EEcCCCeEEEECCCCCCHHHHHHHHH
Confidence 4555553 333321 12445699999999999999999984
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0053 Score=53.03 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
.++++|+||+|||||||...|....+ ..+|+.|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecC
Confidence 46899999999999999999987532 3556654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0044 Score=49.16 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=27.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+++++|++|+||||++-.++.+ ..++++.++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 47899999999999998766543 347788777655
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0063 Score=49.62 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=27.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--C------CCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~------~~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||+..|+.. . .+..+..+..+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 8999999999999999999862 2 255677777664
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+-.+++|.|+.||||||+++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999865
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0015 Score=55.80 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=24.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.++++|+|++||||||+.+.|... ..+.++.++..|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 468999999999999999999753 123446666644
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=49.82 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...+++++|++||||||+.+.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0072 Score=53.32 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred eeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHH----HHHhCC-CCEEE-
Q 025133 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKE----IHEINS-LAHVI- 225 (257)
Q Consensus 152 ~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~----l~~~~~-~a~i~- 225 (257)
..+.+++|+|+......+.. .+...+. ..+.++|+||+|+.+.+.. .+.+.++ .++.+- ..+++
T Consensus 69 ~~~~il~VvD~~d~~~~~~~-----~l~~~~~--~~p~ilV~NK~DL~~~~~~---~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNGSWLP-----GLHRFVG--NNKVLLVGNKADLIPKSVK---HDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp SCCEEEEEEETTSHHHHCCT-----THHHHSS--SSCEEEEEECGGGSCTTSC---HHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred cCcEEEEEEECCCCcccHHH-----HHHHHhC--CCcEEEEEEChhcCCcccC---HHHHHHHHHHHHHHcCCCcccEEE
Confidence 34689999999875432111 0111111 4577899999999875431 2333333 333221 12444
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++..+
T Consensus 139 iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 139 ISAAKGQGIAELADAI 154 (368)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCcCHHHHHhhh
Confidence 7999999999888765
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.01 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 3899999999999999999864
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0075 Score=55.42 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=29.0
Q ss_pred EccccccccCcccCCCcce--e-EEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSNSHENDDVSV--G-VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~--~-vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++...+.++..+.+.+. | =+++.|++|+|||||++.+...
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555544443322 2 2899999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999973
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0039 Score=50.82 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0048 Score=53.87 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+|++|||||||...|.... ...+++.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l---~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF---NGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT---TEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc---CCceeccc
Confidence 589999999999999999998643 24566655
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|.|+|||||+|....|.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0041 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..++++.|++||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0043 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0061 Score=48.50 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
..+++.|++|+|||+|++.+... ..+.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56889999999999999999764 3344554443
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0073 Score=49.13 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
..+++|.|++||||||+++.|.+. ..+.++ +...+|+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG 45 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence 457899999999999999999764 345565 45556653
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.005 Score=55.25 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=22.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.....+++++|++||||||+.+.|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33455899999999999999999975
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.017 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-+++.|++|+||||+++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0037 Score=53.85 Aligned_cols=88 Identities=14% Similarity=0.265 Sum_probs=50.1
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 228 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~ 228 (257)
...++|.++.|+|+.......+... .+.........+.++|+||+|+.++.+..+.++.+.+..+... ...+.+|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~---r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLD---RFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHH---HHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHH---HHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-CeEEEEec
Confidence 4678999999999984332222110 0111122234567999999999976320001344444444433 22344677
Q ss_pred cCCcChhhhhcC
Q 025133 229 RCQVDLSEVLNC 240 (257)
Q Consensus 229 ~~~~~~~~l~~~ 240 (257)
..+.++++|+..
T Consensus 159 ~~~~g~~~L~~~ 170 (307)
T 1t9h_A 159 KDQDSLADIIPH 170 (307)
T ss_dssp HHHTTCTTTGGG
T ss_pred CCCCCHHHHHhh
Confidence 877787776654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-+++.|++|+|||++++.+..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0026 Score=58.83 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCcEEEEccccccccCcccCCCcce---e---EEEEEecCCCcHHHHHHHH
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSV---G---VTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---vv~i~G~~gsGKSTli~~L 52 (257)
+..+++.+++.+...+...+++... + +++|.|++|||||||++.+
T Consensus 9 ~~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 9 PNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp -----CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3445666667655555556554433 3 8999999999999999995
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0055 Score=49.59 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
.+.++|.|++|+||||+++.+... ..+.++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 457899999999999999999764 22455555543
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.009 Score=52.07 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+||+|||||||...|.++. ..-+|+.|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 589999999999999999999743 33566655
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0051 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0059 Score=50.57 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
..+++|.|++||||||+++.|.+. ..+.++++...+|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 358999999999999999999764 345564566667654
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.012 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=22.2
Q ss_pred ceeEE-EEEecCCCcHHHHHHHHHcc--------CCCCeEEEEecCCCc
Q 025133 31 SVGVT-VITGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv-~i~G~~gsGKSTli~~Ll~~--------~~~~~v~ii~~~~g~ 70 (257)
+..++ ++.|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 34455 55588999999998888542 358999999999753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=54.31 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
..++++|+|++||||||+++++.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34588999999999999999985
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0048 Score=51.08 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=27.8
Q ss_pred EccccccccCcccCCCc----ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSNSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~----~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++.+.|.....+.+. ... +++.|++|+|||||++.+...
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45555556554333222 122 899999999999999999864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0038 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0055 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0083 Score=51.68 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=26.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
.++++|+||+|||||||...|....+ .-+++.|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP---VELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC---CcEEecc
Confidence 46899999999999999999987432 3466654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.||||+|||++++++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0065 Score=49.88 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g 69 (257)
+..+++|.|++||||||+++.|.+... +..+ +...+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~ 63 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG 63 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence 345799999999999999999986411 4444 3445554
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0055 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...++++|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999753
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0044 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--C-CCCeEEEEecCCCc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE 70 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~-~~~~v~ii~~~~g~ 70 (257)
.+.+..+++|.|+.||||||+++.|.+. . .|.++..+..+||.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 3445568999999999999999999764 2 45566665667764
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.013 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.007 Score=60.34 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.0
Q ss_pred EEEEcc-----ccccc-cCcccCCCcc------------eeEEEEEecCCCcHHHHHHHH
Q 025133 11 AVRIDE-----TTHEF-SNSHENDDVS------------VGVTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 11 ~~~~~~-----~~~~~-~~~~~~~~~~------------~~vv~i~G~~gsGKSTli~~L 52 (257)
.+++++ +.+.| ++..+..+.. -.+++|+||+|+|||||++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 588888 87777 4444443332 258999999999999999998
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0063 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|.|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0049 Score=56.08 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=33.4
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+.++|++-+ +.-..-++++|+|++|||||||++.|+..
T Consensus 118 mi~~~nl~~~y~~vs-l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 118 MKYIYNLHFMLEKIR-MSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHHHHHHHHHHH-HHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred hhhhhhhhehhhcCc-eEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 467889998886311 11124568999999999999999999864
|
| >4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.17 Score=43.55 Aligned_cols=150 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred CcceeEEEEEe--cCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCC-----Cceeeeeeec---CCCc
Q 025133 29 DVSVGVTVITG--FLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-----GALVEEWVEL---ANGC 98 (257)
Q Consensus 29 ~~~~~vv~i~G--~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~-----~~~~~~~~~l---~~gc 98 (257)
+.++||+.|.- -=|+|||-++-.|.+.-+++++++++.-+|....-. ..+....+ ...-++-..+ ..+|
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~~ilsRGYg~~~~~~-~~v~~~~~~~~~~~~~GDEp~lla~~~~~~ 111 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKGT-LIVSEYGNLKVSWEEAGDEPYLMAKLLPHV 111 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSCEEEEECCCSCSSCSE-EEEEETTEECSCHHHHCHHHHHHHHHCTTS
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcCceEEeecccccccCc-eEEeecccccCCcccccCHHHHHHHhCCCc
Confidence 45677776644 368999999999987655778999998877522100 00100000 0000000001 1122
Q ss_pred eeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 99 icc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+--++... ....++ ...++|+|+.| -|+-+. . ..-|.-|.|+|...+ .+..-+...+
T Consensus 112 ~v~v~~~R~~-~~~~~~-~~~~~dviIlD-DGfQh~-----------~----l~rDl~Ivv~d~~~g---ng~lLPaGpL 170 (315)
T 4ehx_A 112 SVVASEDRYK-GGLLAL-EKLSPEVFILD-DGFQHR-----------K----LHRDLNILLLKKKDL---KDRLLPAGNL 170 (315)
T ss_dssp EEEEESSHHH-HHHHHH-HHHCCSEEEEE-TCTTCT-----------T----BCCSEEEEEEEHHHH---TCCBTTTSSB
T ss_pred eEEEecchHH-HHHHHh-hccCCcEEEec-Cccccc-----------c----ccccceEEEeeeecc---CCeecccccc
Confidence 2211122221 122222 24568888887 232211 1 223555677885432 1222222333
Q ss_pred hHHHHHHhhcCEEEEeCCCCCC
Q 025133 179 PEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~ 200 (257)
.+....++.+|++++|+.+...
T Consensus 171 REp~~~l~raD~iii~~~~~~~ 192 (315)
T 4ehx_A 171 REPLKEIRRADALVLTYQEVEP 192 (315)
T ss_dssp SSCGGGGGGCSEEEEECTTTSC
T ss_pred cCChhHhhhccEEEEecCCcch
Confidence 4555778999999999977543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.011 Score=52.12 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred eeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEEEeCCCCCCcCCCcchHHHHHHH----HHHhCCC-CEE-
Q 025133 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLVSPERSGDSLDELEKE----IHEINSL-AHV- 224 (257)
Q Consensus 152 ~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~vivlNK~D~~~~~~~~~~l~~~~~~----l~~~~~~-a~i- 224 (257)
..+.+++|+|+..+..... .+....+ ..+.++|+||+|+++.+.. .+.+.++ +++..-. ..+
T Consensus 71 ~~~lil~VvD~~d~~~s~~--------~~l~~~l~~~piilV~NK~DLl~~~~~---~~~~~~~l~~~~~~~g~~~~~v~ 139 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFI--------PGLPRFAADNPILLVGNKADLLPRSVK---YPKLLRWMRRMAEELGLCPVDVC 139 (369)
T ss_dssp HCCEEEEEEETTCSGGGCC--------SSHHHHCTTSCEEEEEECGGGSCTTCC---HHHHHHHHHHHHHTTTCCCSEEE
T ss_pred cCcEEEEEEECCCCCCchh--------hHHHHHhCCCCEEEEEEChhcCCCccC---HHHHHHHHHHHHHHcCCCcccEE
Confidence 4579999999987653211 1111112 4577889999999876431 2333333 3333221 244
Q ss_pred EEeecCCcChhhhhcCc
Q 025133 225 IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 225 ~~s~~~~~~~~~l~~~~ 241 (257)
.+|++++.++++++..+
T Consensus 140 ~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 140 LVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 48999999999888765
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0057 Score=52.80 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=28.6
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|. +.|++...+ ....++.+|+|++||||||++.+|.
T Consensus 6 L~i~nf-r~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 6 LYLKGF-KSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEESB-TTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EEEeCc-eeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence 566773 456442222 2344599999999999999999996
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0056 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..++|+|++|||||||++.|...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.019 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0073 Score=50.87 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=26.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CC-----------CCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KH-----------GKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~-----------~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||+..++.. .. +.+++++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 8999999999999999998742 12 34666766554
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.013 Score=47.21 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=24.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
..++|+|++|+|||||...|..+ +. .+++.|
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR--GH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence 46899999999999999999864 22 455554
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0088 Score=51.82 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+|++||||||+...|.... ...+++.|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 489999999999999999998642 23455543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.024 Score=49.02 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--C--CCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--K--HGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~--~~~~v~ii~~~~g 69 (257)
++.|.|++|+|||||+-.++.+ . .+.+++.+..+-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 7899999999999998887653 2 3678888887644
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=50.33 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++|+|+||+|||||+..++.. .++.++++++.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 8999999999999999998743 45688999998854
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0077 Score=48.46 Aligned_cols=24 Identities=42% Similarity=0.690 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCcHHHHHHHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+..++.+|+|+.||||||++.+|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 445799999999999999999984
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0056 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+||||++.+|++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0099 Score=48.34 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=28.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
.+++|.|+.||||||.++.|... ..+.+..+...+||.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 57899999999999999999764 335423466677764
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.037 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.00064 Score=56.10 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=30.4
Q ss_pred cEEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+.++++...++. . -.+...+++|+|++|||||||++.|..
T Consensus 8 ~~l~l~~~~~~~~~-~--~~~~~~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-T--FDLDELVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp EEEEEEEETTEEEE-E--ECHHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred eEEEEEeeecccCC-E--EEEcCcEEEEECCCCCCHHHHHHHHhc
Confidence 35777888766544 1 122225789999999999999999974
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0091 Score=56.56 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
-|+.+|.||||+|||+++-.++.+ .++.++.+++.
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 468999999999999988887653 45778877774
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0084 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++|.|++|+||||+++.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0084 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.|++|+||||+++.+...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3889999999999999999764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0086 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|||||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 257 | ||||
| d1nija1 | 222 | c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-t | 9e-41 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 7e-16 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 4e-09 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 |
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 138 bits (347), Expect = 9e-41
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 22/217 (10%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
+ VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFGE +++ G +
Sbjct: 3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE------VSVDDQLIGDRATQI 56
Query: 92 VELANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL 147
L NGCICC+ + L AL + L + + D +++E TG+A+P P+ + + L
Sbjct: 57 KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 116
Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
LD +I +VDA + Q++++ A Q+ +AD ++L K D+
Sbjct: 117 CQRYLLDGVIALVDAVHADEQMNQFTI------AQSQVGYADRILLTKTDVAGE------ 164
Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244
++L + + IN+ A V +DL + N +
Sbjct: 165 AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFM 201
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 72.7 bits (177), Expect = 7e-16
Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 19/203 (9%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-------EFGEEIGVERAMINEGEGGA 86
+ V G G+GK+TL +N E R + E
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE--- 58
Query: 87 LVEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD 144
++ E + + + L ++++ ++ D++L++T G
Sbjct: 59 IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGV-- 116
Query: 145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERS 204
+L + ++ + D + L D ++ + LNKVDL+S E
Sbjct: 117 -RLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE- 174
Query: 205 GDSLDELEKEIHEINSLAHVIRS 227
+ K +I+ L ++
Sbjct: 175 ---KERHRKYFEDIDYLTARLKL 194
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (124), Expect = 4e-09
Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 7/143 (4%)
Query: 34 VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
+ + G GK+TL+ ++ G R +I + + + + A +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKERL-----DHILLETTGLANPAPLASVLWLDDQ 146
+ + + + L+ ++ + +
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123
Query: 147 LESAVRLDSIITVVDAKNLLFQI 169
E V +I V L +
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDV 146
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 51.8 bits (123), Expect = 5e-09
Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 5/141 (3%)
Query: 34 VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
V + G+ +GK+TL+ + + G R+ + + ++
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKERL--DHILLETTGLANPAPLASVLWLDDQLES 149
+ + + L+ ++ L D +L+E P ++ ++ S
Sbjct: 63 TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQE-RHPKVVLVRSEEDWAS 121
Query: 150 AVRLDSIITVVDAKNLLFQID 170
L +I V+ + L +
Sbjct: 122 LQHLANIRAVIAWEPLEGPLA 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 100.0 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.78 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.73 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.72 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.69 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.63 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.63 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.57 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.56 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.55 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.54 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.54 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.51 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.49 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.4 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 99.32 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 99.25 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.23 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.21 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 99.21 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 99.21 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 99.2 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.19 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.18 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.15 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.15 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.12 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.11 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.11 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.06 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.06 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.04 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.04 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.03 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.02 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.0 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.0 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 98.98 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.94 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 98.94 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 98.93 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 98.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 98.9 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 98.87 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 98.86 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 98.85 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 98.82 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 98.78 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 98.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 98.77 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 98.77 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 98.77 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.75 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 98.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.72 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.7 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.69 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 98.67 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.62 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.58 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.57 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.55 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.44 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 98.39 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.38 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.31 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.28 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.26 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.19 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.15 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.14 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.08 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.07 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.01 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.01 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.97 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 97.95 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.93 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.87 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.87 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.83 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.82 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.81 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.79 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.76 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 97.73 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.7 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.67 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.57 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 97.53 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.51 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.5 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.49 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.43 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.38 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.38 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.37 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.35 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.34 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.33 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.33 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.3 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.26 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 97.19 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.18 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.18 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.13 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.02 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.01 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.0 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.97 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.97 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.96 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.96 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.95 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.8 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.77 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.65 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.6 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.58 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.58 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.55 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.49 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.49 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.49 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.48 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.47 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.47 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.45 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.45 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.44 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.44 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.43 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.38 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.36 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.36 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.34 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 96.29 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.19 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.19 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.14 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.12 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.11 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.0 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.98 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.96 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.95 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.91 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.91 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.9 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.88 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.8 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.73 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.71 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.67 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.5 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.5 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.49 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.41 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.27 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.25 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.21 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.15 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.05 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.99 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.95 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 94.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.78 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.78 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.72 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.51 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.29 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.27 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.14 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.1 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 94.04 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 94.04 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.98 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.89 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.72 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.69 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.59 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 93.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.41 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 93.41 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.04 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.01 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.8 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.78 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.75 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.7 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.5 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.33 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.2 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.19 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.58 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.0 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.97 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 90.93 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.82 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.33 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.28 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.35 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.42 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 85.2 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.03 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.53 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 82.5 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.22 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 80.91 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.16 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 80.1 |
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-36 Score=250.92 Aligned_cols=200 Identities=35% Similarity=0.617 Sum_probs=170.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++|+++|+||+|||||||+++|+++.+++++++|.||+|+ .++|..++.... ....++.+||+||+.+.++...
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~-~~iD~~~~~~~~-----~~~~el~~gcicc~~~~~~~~~ 75 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA 75 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHHH
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccc-hhhhhhhhcccc-----cceEEecCCcceeccchhHHHH
Confidence 6899999999999999999999998779999999999997 888877665421 2467899999999999998888
Q ss_pred HHHHHHh----cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 111 LEQLVQR----KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 111 l~~~~~~----~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
+..++.+ ..++++++|||+|+++|.++...+.....+.....++.+++|||+.++....+. .+.+..|++
T Consensus 76 l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~------~~~~~~Qi~ 149 (222)
T d1nija1 76 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVG 149 (222)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHHH
T ss_pred HHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhh------hHHHHHHHH
Confidence 8776543 347899999999999999998766544455566789999999999999877654 355778999
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCCCC
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
.||++|+||+|++++ .+.+++.++++||.++|+.+++++++++.|++...|++...
T Consensus 150 ~AD~ivlNK~Dl~~~------~~~~~~~l~~lNP~a~Ii~~~~g~v~~~~ll~~~~~d~e~~ 205 (222)
T d1nija1 150 YADRILLTKTDVAGE------AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEEN 205 (222)
T ss_dssp TCSEEEEECTTTCSC------THHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSC
T ss_pred hCCcccccccccccH------HHHHHHHHHHHhCCCeEEEeeCCccCHHHhhCCCCCCcccc
Confidence 999999999999874 36788999999999999999999999999999988876543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.81 E-value=2.3e-21 Score=160.39 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=122.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCccc-----ccchhhhhcCCCCceeeeeeecCCCceeec--cch
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEI-----GVERAMINEGEGGALVEEWVELANGCICCT--VKH 105 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~-----~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~ 105 (257)
|++|+||+|||||||+++|+.+ ..++++++++.++|.+. .+|...+.... .. ........+||.||. ...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 79 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVE-EI-MREGYGPNGAIVESYDRLME 79 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHH-HH-HTTTCCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHH-HH-hHhhhccCCchhhhhHhHHh
Confidence 7899999999999999999874 45788999998887522 22322211000 00 011234556777765 334
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
.+..............+++++|+||..++....... ..+......+.+++++|+.....................|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~---~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~ 156 (244)
T d1yrba1 80 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG---VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL 156 (244)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHH---HHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccccceeeeccccchhHHHHHHHH---HHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh
Confidence 444333333333457899999999987654433211 11223345668999999987655443321111112234678
Q ss_pred hhcCEEEEeCCCCCCcCCCcch------------------------HHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 186 AFADVVILNKVDLVSPERSGDS------------------------LDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~------------------------l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
..|+++++||+|+++.++.... ...+...+++..+..+++ +|++++.|+++|++.
T Consensus 157 ~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~ 236 (244)
T d1yrba1 157 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 236 (244)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHH
Confidence 8899999999999986542110 011111122334455555 799999999999865
Q ss_pred c
Q 025133 241 R 241 (257)
Q Consensus 241 ~ 241 (257)
+
T Consensus 237 l 237 (244)
T d1yrba1 237 A 237 (244)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=9.3e-20 Score=144.46 Aligned_cols=169 Identities=21% Similarity=0.221 Sum_probs=108.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.|+|+|.+|+|||||+|+|+ +.+++.++..++++..... ....
T Consensus 3 ~~~~~I~lvG~~~~GKSSLin~l~----~~~~~~~~~~~~tt~~~~~-------------~~~~---------------- 49 (178)
T d1wf3a1 3 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRKRLR-------------GILT---------------- 49 (178)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEE-------------EEEE----------------
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecccCCccccccc-------------ceee----------------
Confidence 345789999999999999999999 4444555555554111100 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hh
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF 187 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~ 187 (257)
..+..+.++||||+.....................+|.+++|+|+.......+.. +...+.+. ..
T Consensus 50 --------~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~-----i~~~l~~~~~~~ 116 (178)
T d1wf3a1 50 --------EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV 116 (178)
T ss_dssp --------ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred --------eeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccccc-----hhhheeccccch
Confidence 2345688999999876543333222223334455789999999998754332221 12223222 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCCCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVNPI 250 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~~ 250 (257)
+.++|+||+|+.+.. +...+.+++..+...++ +|++++.|+++|++.+...+++.|+
T Consensus 117 piilv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe~p~ 174 (178)
T d1wf3a1 117 PILLVGNKLDAAKYP------EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPF 174 (178)
T ss_dssp CEEEEEECGGGCSSH------HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCC
T ss_pred hhhhhhcccccccCH------HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence 678899999998753 33445556666666666 7999999999999988777666554
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=8.1e-18 Score=145.54 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=109.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc-----cchhhhhc--CCCCceeeeeeecCCCcee
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG-----VERAMINE--GEGGALVEEWVELANGCIC 100 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~-----~d~~~~~~--~~~~~~~~~~~~l~~gcic 100 (257)
.+.++++|+|+||||||||+++|..+ ..|++++++..||.+... -|+..+.. ...++++.... .+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~---~~--- 125 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVP---SS--- 125 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEEC---C----
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccc---cc---
Confidence 45889999999999999999999864 458899999999986321 12222221 11122222111 11
Q ss_pred eccchhHHHHHHHHH--HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKHSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~~~~~~l~~~~--~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
+.+ +.+.....+.. ....++|++||||+|.......... .+|.+++|+++..+......
T Consensus 126 g~l-gg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~-----------~aD~~l~v~~P~~Gd~iq~~------- 186 (327)
T d2p67a1 126 GHL-GGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVAR-----------MVDCFISLQIAGGGDDLQGI------- 186 (327)
T ss_dssp -----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHT-----------TCSEEEEEECC------CCC-------
T ss_pred ccc-ccchhhhhHHHHHHHhcCCCeEEEeeccccccchhhhh-----------ccceEEEEecCCCchhhhhh-------
Confidence 111 11222222221 1256899999999998865433321 25788889988766443211
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....++.+|++|+||+|.............+...++.+.+ ..+|+ .|+.++.|+++|++.+
T Consensus 187 --k~gi~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I 253 (327)
T d2p67a1 187 --KKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI 253 (327)
T ss_dssp --CHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred --chhhhccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHH
Confidence 1124677999999999988765433344555555554432 24677 7899999999998776
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.72 E-value=1.8e-17 Score=143.22 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=113.6
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc-----cchhhhhcCCCCceeeeeeecCCCceee
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG-----VERAMINEGEGGALVEEWVELANGCICC 101 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~-----~d~~~~~~~~~~~~~~~~~~l~~gcicc 101 (257)
..+.++++|+|+||||||||+++|..+ ..+.+++|+..||.+... -|+..+... ....+|.|.
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~----------~~~~~~~ir 117 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARL----------AIDRNAFIR 117 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTG----------GGCTTEEEE
T ss_pred cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHH----------hcccceeec
Confidence 346789999999999999999999874 569999999999986321 122222210 001122222
Q ss_pred c--cc---hhHHHHHHHHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhcc
Q 025133 102 T--VK---HSLVQALEQLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (257)
Q Consensus 102 ~--~~---~~~~~~l~~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~ 174 (257)
+ .+ +.+.....+.+. ...+++++||||+|..........+ .|..++|+.+..+......
T Consensus 118 ~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~-----------~D~~v~v~~p~~GD~iQ~~--- 183 (323)
T d2qm8a1 118 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADL-----------TDFFLVLMLPGAGDELQGI--- 183 (323)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTT-----------SSEEEEEECSCC------C---
T ss_pred cccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcc-----------cceEEEEeeccchhhhhhh---
Confidence 2 11 333333333321 3568999999999988765544322 5888999999876543222
Q ss_pred CCChhHHHHHHhhcCEEEEeCCCCCCcCCCcch-HHHHHHHHHHhC-----CCCEEE-EeecCCcChhhhhcCc
Q 025133 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDS-LDELEKEIHEIN-----SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 175 ~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~-l~~~~~~l~~~~-----~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+++.||++|+||+|+.+.++.... ...+...+.... +..+|+ .|+.++.|+++|++++
T Consensus 184 ------k~gilE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I 251 (323)
T d2qm8a1 184 ------KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI 251 (323)
T ss_dssp ------CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHH
T ss_pred ------hhhHhhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHH
Confidence 124678899999999998876542111 112223232221 334566 7999999999998876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1.8e-17 Score=132.84 Aligned_cols=173 Identities=13% Similarity=0.152 Sum_probs=102.3
Q ss_pred cccCcccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCce
Q 025133 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (257)
Q Consensus 20 ~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci 99 (257)
+....+++++.++|.|+|+|.+|||||||+|+|++. ..++.....++.+..... .
T Consensus 11 ~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~---~~~~~~~~~~~~t~~~~~---------------~------- 65 (195)
T d1svia_ 11 SAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINR---KNLARTSSKPGKTQTLNF---------------Y------- 65 (195)
T ss_dssp EESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC----------------CCEEE---------------E-------
T ss_pred ecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCC---CceEEeecccceeeeccc---------------c-------
Confidence 445667888889999999999999999999999942 122333333332110000 0
Q ss_pred eeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCc---HHHHH--hcccccccccceeeeeEEEEEeccchHHHHhhhcc
Q 025133 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANP---APLAS--VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (257)
Q Consensus 100 cc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~---~~~~~--~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~ 174 (257)
.....+.++|++|...+ ....+ .............++.+++|+|+.......+..
T Consensus 66 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~-- 125 (195)
T d1svia_ 66 ------------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-- 125 (195)
T ss_dssp ------------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--
T ss_pred ------------------cccccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccc--
Confidence 11244567888885432 11111 011122234445678999999997654332221
Q ss_pred CCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 175 ~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...+.+.+.+.++|+||+|+++..+..+.++.+++.+. .+++.+++ +|+.++.|+++++..+
T Consensus 126 ---~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~SA~~~~gi~el~~~i 189 (195)
T d1svia_ 126 ---MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN-IDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp ---HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-CCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred ---cccccccccCcceechhhccccCHHHHHHHHHHHHHHhc-ccCCCCEEEEeCCCCCCHHHHHHHH
Confidence 334556667788999999999987653233333333332 45666766 7899999999998765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=2.6e-17 Score=130.28 Aligned_cols=160 Identities=20% Similarity=0.189 Sum_probs=96.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|-|+|+|.+|+|||||+|+|++ .+..+ .+..+.+.... +. ....
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~----~~~~~-~~~~~~t~~~~------------~~-~~~~------------------ 45 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTR----AHPKI-APYPFTTLSPN------------LG-VVEV------------------ 45 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS----SCCEE-CCCTTCSSCCE------------EE-EEEC------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhC----CCCce-eccCCCceeee------------ec-eeee------------------
Confidence 4489999999999999999984 44443 33333211110 00 0000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH-HhhhccCCChhHH--HHHHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ-IDKYRHLSSYPEA--IHQIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~-~~~~~~~~~~~~~--~~ql~~~~ 189 (257)
..+..+.++||||+.......+... ...+......+.+++++|+...... ...... .... ......+.
T Consensus 46 -----~~~~~~~~~DtpG~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ 116 (180)
T d1udxa2 46 -----SEEERFTLADIPGIIEGASEGKGLG-LEFLRHIARTRVLLYVLDAADEPLKTLETLRK---EVGAYDPALLRRPS 116 (180)
T ss_dssp -----SSSCEEEEEECCCCCCCGGGSCCSC-HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHH---HHHHHCHHHHHSCE
T ss_pred -----cCCCeEEEcCCCeeecCchHHHHHH-HHHHHHHHhhhhhhhhcccccccccchhhhhh---hhhccccccchhhh
Confidence 2245688999999876433222111 2234455677899999998654322 111100 0101 12345688
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++|+||+|+.++++ .+.+.+.+... ..+++ +|++++.|+++|+..+..
T Consensus 117 iiv~NK~D~~~~~~----~~~~~~~~~~~--~~~~~~iSA~tg~gid~L~~~i~~ 165 (180)
T d1udxa2 117 LVALNKVDLLEEEA----VKALADALARE--GLAVLPVSALTGAGLPALKEALHA 165 (180)
T ss_dssp EEEEECCTTSCHHH----HHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHH----HHHHHHHHHhc--CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999998754 45566666543 33455 899999999999887743
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=2.6e-17 Score=129.16 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=90.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.|+++|.+|+|||||+|+|+ +.+.+++...++.+.......+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~----~~~~~~~~~~~~~t~~~~~~~~---------------------------------- 43 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTRDPVQDTV---------------------------------- 43 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHH----C--------------CCSEEEE----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHh----CCCcceecccCceeeccccccc----------------------------------
Confidence 58999999999999999999 5555666666654211110000
Q ss_pred HHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~viv 192 (257)
......+.+.||+|+.... ...........+.....+|.+++++|+.......+.. +...+.....|.++|
T Consensus 44 ---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~-----~~~~l~~~~~pviiv 115 (171)
T d1mkya1 44 ---EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDTILV 115 (171)
T ss_dssp ---EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCEEEE
T ss_pred ---cccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccccc-----ccccccccccccccc
Confidence 0234568899999965432 1111111112223345678999999997654433321 223344456678999
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+||+|+.++.+ .++...+.+......+.+|++++.|+++|++.+..
T Consensus 116 ~NK~Dl~~~~~-----~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~ 161 (171)
T d1mkya1 116 ANKAENLREFE-----REVKPELYSLGFGEPIPVSAEHNINLDTMLETIIK 161 (171)
T ss_dssp EESCCSHHHHH-----HHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred chhhhhhhhhh-----hHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHH
Confidence 99999986432 33333344444444566899999999999887654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=7.5e-16 Score=121.63 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=89.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+++|++|+|||||+|+|++ +++ .++..+|++. ....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~----~~~-~~~~~~g~T~----~~~~--------------------------------- 39 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG----KKV-RRGKRPGVTR----KIIE--------------------------------- 39 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS----CCC-SSSSSTTCTT----SCEE---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhC----CCc-eeeCCCCEee----cccc---------------------------------
Confidence 478999999999999999994 333 2345555421 1110
Q ss_pred HHHhcCCCCEEEEecCCCCCc----HHHHHh---cccccccccceeeeeEEEEEeccchHHHHhhhc--cCCC----hhH
Q 025133 114 LVQRKERLDHILLETTGLANP----APLASV---LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR--HLSS----YPE 180 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~----~~~~~~---~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~--~~~~----~~~ 180 (257)
....++.|+||||+... ....+. ............+|.+++|+|+........... .... +..
T Consensus 40 ----~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (184)
T d2cxxa1 40 ----IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ 115 (184)
T ss_dssp ----EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred ----cccccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHH
Confidence 11234679999996421 111111 111111223346789999999986544332211 1111 122
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC--CCC-EEEEeecCCcChhhhhcCcc
Q 025133 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN--SLA-HVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~--~~a-~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+.+...|.++|+||+|+++..+ .....+...+.... ... .+.+|++++.|+++|++.+.
T Consensus 116 ~l~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 178 (184)
T d2cxxa1 116 FLRELDIPTIVAVNKLDKIKNVQ--EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178 (184)
T ss_dssp HHHHTTCCEEEEEECGGGCSCHH--HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeeeehhhhHH--HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHH
Confidence 33445667899999999986532 12222222221110 111 23479999999999987653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.1e-15 Score=121.05 Aligned_cols=162 Identities=23% Similarity=0.234 Sum_probs=96.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+|+|.+|+|||||+|+|+ +.+.+.+.+.++++...... ...
T Consensus 10 kV~iiG~~~~GKSTLin~l~----~~~~~~~~~~~~t~~~~~~~-------------~~~-------------------- 52 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDD-------------EVF-------------------- 52 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCE-------------EEE--------------------
T ss_pred EEEEECCCCCCHHHHHHHHH----CCCcceeeccccccccccee-------------eec--------------------
Confidence 47899999999999999999 45556666666542111100 000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcc----cccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLW----LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~----~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+.++.++|+||............ ....+.....+|++++|+|+..+....... +...+.....+.
T Consensus 53 ----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~-----~~~~~~~~~~~~ 123 (186)
T d1mkya2 53 ----IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-----MAGLMERRGRAS 123 (186)
T ss_dssp ----ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCEE
T ss_pred ----cCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHH-----HHHHHHHcCCce
Confidence 2345677899999754332211110 011223345678999999998654433221 233445566788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCccC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++|+||+|+....+ ..+..+.+.+++.. +.++++ +|++++.|+++|++.+..
T Consensus 124 i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~ 179 (186)
T d1mkya2 124 VVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179 (186)
T ss_dssp EEEEECGGGSTTGG--GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred eeeccchhhhcchh--hhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999986654 23455555555432 344555 899999999999887643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.4e-14 Score=113.71 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=107.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
-.+.|+|+|.+|+|||||+|+|. +.++++.+..++++.. .+.....
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~----~~~~~~~~~~~~t~~~-------------~~~~~~~----------------- 49 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTRH-------------RIVGIHT----------------- 49 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCSS-------------CEEEEEE-----------------
T ss_pred cccEEEEECCCCCCHHHHHHHHh----CCCceeeccCCCceEE-------------EEEeeee-----------------
Confidence 35679999999999999999999 5677777766554110 0000100
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHH-HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
.....++++|++|....... ...............++.++++.|+.......... ...+.+-..+.
T Consensus 50 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~~~l~~~~~~~ 116 (179)
T d1egaa1 50 -------EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV------LNKLREGKAPV 116 (179)
T ss_dssp -------ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHH------HHHHHSSSSCE
T ss_pred -------cCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhHHHH------HHHhhhccCce
Confidence 22345778899997654322 22222122233345678899999988655443321 12223334567
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCCCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVNPI 250 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~~ 250 (257)
++++||+|.+...+ .+......+.......+++ +|++++.|+++|++.+...+++.|+
T Consensus 117 i~v~~k~d~~~~~~---~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~~~ 175 (179)
T d1egaa1 117 ILAVNKVDNVQEKA---DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATH 175 (179)
T ss_dssp EEEEESTTTCCCHH---HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCC
T ss_pred eeeeeeeeccchhh---hhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCCCCC
Confidence 88999999887642 2344444455545555666 7999999999999999777766544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=2.5e-16 Score=121.71 Aligned_cols=151 Identities=25% Similarity=0.316 Sum_probs=94.2
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|+ |.+.+.++..+|.+... .. ....
T Consensus 3 I~liG~~n~GKSSLin~l~----g~~~~~~~~~~~~~~~~----~~---------~~~~--------------------- 44 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLL----NEDRAIVTDIPGTTRDV----IS---------EEIV--------------------- 44 (160)
T ss_dssp EEEECCHHHHTCHHHHHHH----HHTBCCCCCSSCCSSCS----CC---------EEEE---------------------
T ss_pred EEEECCCCCCHHHHHHHHh----CCCceeeeccccccccc----ee---------EEEE---------------------
Confidence 7899999999999999998 44455666666641111 00 0001
Q ss_pred HHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEE
Q 025133 115 VQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVI 192 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~viv 192 (257)
..+..+.++||||+..+. ...+.......+.....+|.+++|+|+........ .....++ ..+.+++
T Consensus 45 ---~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~--------~~~~~~~~~~~~i~~ 113 (160)
T d1xzpa2 45 ---IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED--------RKILERIKNKRYLVV 113 (160)
T ss_dssp ---ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH--------HHHHHHHTTSSEEEE
T ss_pred ---eCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhh--------hhhhhhcccccceee
Confidence 224557899999965432 22121111223344557899999999986543322 1222333 3456778
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+||+|+.+... .+.+... +.+..+++ +|++++.|+++|++++
T Consensus 114 ~~k~d~~~~~~----~~~~~~~---~~~~~~~~~vSA~~g~gi~~L~~~I 156 (160)
T d1xzpa2 114 INKVDVVEKIN----EEEIKNK---LGTDRHMVKISALKGEGLEKLEESI 156 (160)
T ss_dssp EEECSSCCCCC----HHHHHHH---HTCSTTEEEEEGGGTCCHHHHHHHH
T ss_pred eeeccccchhh----hHHHHHH---hCCCCcEEEEECCCCCCHHHHHHHH
Confidence 99999998754 3444433 34555555 8999999999998754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=1.2e-16 Score=126.87 Aligned_cols=168 Identities=20% Similarity=0.192 Sum_probs=89.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-|+|+|++|+|||||+|+|++ .++.+ .+.++.+...... ...+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~----~~~~~-~~~~~~T~~~~~~-------------~~~~------------------ 45 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSS----AKPKI-ADYHFTTLVPNLG-------------MVET------------------ 45 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE----ECCEE-SSTTSSCCCCCEE-------------EEEC------------------
T ss_pred CeEEEECCCCCCHHHHHHHHhC----CCCce-ecCCCceEeeeec-------------eeEe------------------
Confidence 5689999999999999999984 34443 3444431211100 0011
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHH--hhhccCCChhHHH---HHHhh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI--DKYRHLSSYPEAI---HQIAF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~--~~~~~~~~~~~~~---~ql~~ 187 (257)
..+..+.++||||+.........+. ...+....+.+.++++++........ ...... ...... .....
T Consensus 46 -----~~~~~~~~~DtpG~~~~~~~~~~~~-~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k 118 (185)
T d1lnza2 46 -----DDGRSFVMADLPGLIEGAHQGVGLG-HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTI-NQELSEYNLRLTER 118 (185)
T ss_dssp -----SSSCEEEEEEHHHHHHHTTCTTTTH-HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHH-HHHHHHSCSSTTTS
T ss_pred -----cCCcEEEEecCCCcccCchHHHHHH-HHHHHHHHHhhhhhheeeecccccchhhhhhhhh-hhccchhhhhccCC
Confidence 1234578999999642111000000 11223334566777777655321100 000000 000000 01134
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCCC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVNP 249 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~ 249 (257)
|.++|+||+|+.+.. ..+....+.+....+++ +|++++.|+++|++.+.-.+...|
T Consensus 119 p~ivv~NK~Dl~~~~------~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 119 PQIIVANKMDMPEAA------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175 (185)
T ss_dssp CBCBEEECTTSTTHH------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred cchhhccccchHhHH------HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence 678999999998753 23333334455555665 899999999999888744443333
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.54 E-value=2.7e-15 Score=123.23 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.|+|+|.|.+|+|||||+|+|+.... ..+..-+..+.+. ...+....... ... ..
T Consensus 3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--------------------~~ 60 (227)
T d1g7sa4 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA-TEIPMDVIEGI-CGD--------------------FL 60 (227)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE-EEEEHHHHHHH-SCG--------------------GG
T ss_pred CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccc-ccccccccccc-ccc--------------------cc
Confidence 4679999999999999999999985310 0111111111111 11111000000 000 00
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
...-....+..+.||||||..... .........+|.+++|+||..+....... ....+...+.|
T Consensus 61 ---~~~~~~~~~~~~~~iDtPGh~~f~--------~~~~~~~~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p 124 (227)
T d1g7sa4 61 ---KKFSIRETLPGLFFIDTPGHEAFT--------TLRKRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTP 124 (227)
T ss_dssp ---GGCGGGGTCCEEEEECCCTTSCCT--------TSBCSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCC
T ss_pred ---cceeecccccccccccccceeccc--------ccchhcccccceEEEEEecccCcccchhH-----HHHHhhcCCCe
Confidence 000001446779999999953321 22234456789999999998765544332 33444556779
Q ss_pred CEEEEeCCCCCCcCC
Q 025133 189 DVVILNKVDLVSPER 203 (257)
Q Consensus 189 ~vivlNK~D~~~~~~ 203 (257)
.++++||+|+++.+.
T Consensus 125 ~iivlNK~D~~~~~~ 139 (227)
T d1g7sa4 125 FVVAANKIDRIHGWR 139 (227)
T ss_dssp EEEEEECGGGSTTCC
T ss_pred EEEEEECccCCCchh
Confidence 999999999987653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.2e-16 Score=120.59 Aligned_cols=152 Identities=21% Similarity=0.288 Sum_probs=92.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|+ +.+..++.+.+|.+... + .....
T Consensus 4 I~lvG~~nvGKSsLin~l~----~~~~~~~~~~~~~~~~~----~---------~~~~~--------------------- 45 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALA----GREAAIVTDIAGTTRDV----L---------REHIH--------------------- 45 (161)
T ss_dssp EEEEESTTSSHHHHHHHHH----TSCCSCCCSSTTCCCSC----E---------EEEEE---------------------
T ss_pred EEEECCCCCCHHHHHHHHh----CCCceEeecccccccce----E---------eeeee---------------------
Confidence 6799999999999999999 44555666667652110 0 00000
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVI 192 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~viv 192 (257)
..+..+.++|+||+.+.....+.............++.+++++|+.......... .+...+.+. +.+.++|
T Consensus 46 ---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~iilv 118 (161)
T d2gj8a1 46 ---IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE----IWPEFIARLPAKLPITVV 118 (161)
T ss_dssp ---ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHH----HCHHHHHHSCTTCCEEEE
T ss_pred ---ccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhh----hhhhhhhhcccccceeec
Confidence 2345678999999876543332222222333345688999999998643211100 011222222 4567899
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.++... +++. ...+++ +|++++.|+++|++.+.
T Consensus 119 ~NK~Dl~~~~~~----------~~~~-~~~~~~~iSAk~~~gi~~L~~~l~ 158 (161)
T d2gj8a1 119 RNKADITGETLG----------MSEV-NGHALIRLSARTGEGVDVLRNHLK 158 (161)
T ss_dssp EECHHHHCCCCE----------EEEE-TTEEEEECCTTTCTTHHHHHHHHH
T ss_pred cchhhhhhhHHH----------HHHh-CCCcEEEEECCCCCCHHHHHHHHH
Confidence 999998876532 1122 233555 89999999999987653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.49 E-value=6.9e-15 Score=116.25 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.++|++|........ .......|.+++|+|+.......... +.......+.|.++|+||+|+.
T Consensus 58 ~~~~~~~d~~g~~~~~~~~--------~~~l~~~d~~ilv~d~~~g~~~~~~~-----~~~~~~~~~~p~iiv~NKiD~~ 124 (179)
T d1wb1a4 58 NYRITLVDAPGHADLIRAV--------VSAADIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA 124 (179)
T ss_dssp TEEEEECCCSSHHHHHHHH--------HHHTTSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred Cccccccccccccccccch--------hhhhhhccccccccccccccchhhhh-----hhhhhhhcCCcceecccccccc
Confidence 4567789999854322211 11233578999999999765433221 2334455678999999999999
Q ss_pred CcCCCcchHHHHHHHHHHhC--CCCEEE-EeecCCcChhhhhcCccC
Q 025133 200 SPERSGDSLDELEKEIHEIN--SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~--~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.++.......++..++... +..+++ +|++++.|+++|++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~ 171 (179)
T d1wb1a4 125 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 171 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHh
Confidence 87542222222333333322 234554 899999999999887643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7e-14 Score=109.76 Aligned_cols=171 Identities=16% Similarity=0.113 Sum_probs=90.1
Q ss_pred cccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeecc
Q 025133 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (257)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (257)
-.+++....|.|+++|.+|+|||||+|+|+ +.+........+.+..... ....
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~----~~~~~~~~~~~~~~~~~~~--------------~~~~--------- 60 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLIN--------------LFEV--------- 60 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEE--------------EEEE---------
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHh----CCCceEeecccccceeecc--------------ceec---------
Confidence 345677788999999999999999999998 4444444443332110000 0000
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCC----cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLAN----PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~----~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
..+...+..++++... ........ ..........+..++.+.|+.......... ..
T Consensus 61 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 120 (188)
T d1puia_ 61 --------------ADGKRLVDLPGYGYAEVPEEMKRKWQRA-LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-----MI 120 (188)
T ss_dssp --------------ETTEEEEECCCCC------CCHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----HH
T ss_pred --------------ccccceeeeecccccchhhhhhhhhhhh-hhhhhhhhhheeEEEEeecccccchhHHHH-----HH
Confidence 0111122222222111 01111100 011112233455666777766543322211 22
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
........+.++++||+|+++..+.....+.+.+.++...+..+++ +|++++.|+++|+..+
T Consensus 121 ~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i 183 (188)
T d1puia_ 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183 (188)
T ss_dssp HHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHH
Confidence 2334445678889999999987665455666677776666766666 8999999999998754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=99.32 E-value=7.5e-12 Score=100.90 Aligned_cols=180 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~ 104 (257)
+....-+++++|++|+||||++-+|..+ ..++++++++.|... .+.-.++-.... -++. .......
T Consensus 8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~ga~eQL~~~a~~l~v~----------~~~~~~~ 76 (211)
T d1j8yf2 8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGVP----------VYGEPGE 76 (211)
T ss_dssp CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS-HHHHHHHHHHHHHHTCC----------EECCTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc-cchhHHHHHhccccCcc----------eeecccc
Confidence 3344457889999999999999999753 458899999999765 332222221100 0000 0111223
Q ss_pred hhHHHHHHHHHH--hcCCCCEEEEecCCCCCcH---HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 105 HSLVQALEQLVQ--RKERLDHILLETTGLANPA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 105 ~~~~~~l~~~~~--~~~~~~~ilIDt~G~~~~~---~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
.++...+.+-+. ...+.++|||||+|..... ...+.+ ..+......+.+++|+|+.......+.. .
T Consensus 77 ~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el---~~~~~~~~~~~~~LVl~a~~~~~~~~~~------~ 147 (211)
T d1j8yf2 77 KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEM---KNIYEAIKPDEVTLVIDASIGQKAYDLA------S 147 (211)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHH---HHHHHHHCCSEEEEEEEGGGGGGHHHHH------H
T ss_pred hhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHH---HHHHhhcCCceEEEEEecccCcchHHHH------h
Confidence 345444443221 2457999999999964322 112211 1122333456789999999876554421 1
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.+.+....+-++++|.|.... +..+....... ..++..-+.+ .++++|
T Consensus 148 -~~~~~~~~~~lI~TKlDet~~------~G~~l~~~~~~--~lPi~~it~G-q~v~DL 195 (211)
T d1j8yf2 148 -KFNQASKIGTIIITKMDGTAK------GGGALSAVAAT--GATIKFIGTG-EKIDEL 195 (211)
T ss_dssp -HHHHHCTTEEEEEECTTSCSC------HHHHHHHHHTT--TCCEEEEECS-SSTTCE
T ss_pred -hhhcccCcceEEEecccCCCc------ccHHHHHHHHH--CcCEEEEeCC-CCcccC
Confidence 122223356789999997654 56666655543 3345433333 344443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.7e-11 Score=97.51 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.-+++++|++|+||||++-+|..+ ..++++++++.|.-. .+.-.++-... ..++.+ .-.....++.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a~~l~v~~----------~~~~~~~d~~ 77 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR-AAAVEQLQVWGQRNNIPV----------IAQHTGADSA 77 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC-HHHHHHHHHHHHHTTCCE----------ECCSTTCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc-ccchhhhhhhhhhcCCcc----------cccccCCCHH
Confidence 447899999999999999999753 568999999999654 33222222110 001110 1112344566
Q ss_pred HHHHHHHH--hcCCCCEEEEecCCCCCc-HHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 109 QALEQLVQ--RKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 109 ~~l~~~~~--~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+.+... +..++|+|||||+|..+. ...++.+. +....+ .......+++|+|+.......... ..++
T Consensus 78 ~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~------~~~~ 151 (211)
T d2qy9a2 78 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA------KLFH 151 (211)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH------hhhh
Confidence 66655543 245789999999996543 33333221 001111 111235788999999877654431 1122
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
+.-..+-++++|.|....
T Consensus 152 -~~~~~~~lIlTKlDe~~~ 169 (211)
T d2qy9a2 152 -EAVGLTGITLTKLDGTAK 169 (211)
T ss_dssp -HHSCCCEEEEECCTTCTT
T ss_pred -hccCCceEEEeecCCCCC
Confidence 222478999999998654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.23 E-value=2.6e-12 Score=103.34 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=67.0
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~~ 199 (257)
.+.+|||||-.+..... ......+|.+++|+|+..+. ...... .......++. +.++++||+|+.
T Consensus 87 ~~~iiD~PGH~df~~~~--------~~~~~~ad~ailvVda~~gi~~~~t~e-----~~~~~~~~~i~~iIV~vNK~Dl~ 153 (205)
T d2qn6a3 87 RISFIDAPGHEVLMATM--------LSGAALMDGAILVVAANEPFPQPQTRE-----HFVALGIIGVKNLIIVQNKVDVV 153 (205)
T ss_dssp EEEEEECSCHHHHHHHH--------HHTSSCCSEEEEEEETTSCSSCHHHHH-----HHHHHHHTTCCCEEEEEECGGGS
T ss_pred EEEEeccchHHHHHhhh--------hcceeccccccccccccccccchhHHH-----HHHHHHHcCCceeeeccccCCCc
Confidence 47899999965432221 22344579999999998763 221110 1222334454 346679999999
Q ss_pred CcCCCcchHHHHHHHHHHhCC-CCEEE-EeecCCcChhhhhcCccC
Q 025133 200 SPERSGDSLDELEKEIHEINS-LAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~-~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.++.......+...++..++ .++++ +|++.+.|+++|++.+..
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~ 199 (205)
T d2qn6a3 154 SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE 199 (205)
T ss_dssp CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHh
Confidence 876533333444555554433 34444 899999999999887643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.21 E-value=1.4e-12 Score=101.80 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+++|... +........|. +...+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~----~~~~~~~~~~~----~~~~i~--------------------------------- 56 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE----DISHITPTQGF----NIKSVQ--------------------------------- 56 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS----CCEEEEEETTE----EEEEEE---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCCcceeeeee----eEEEec---------------------------------
Confidence 4789999999999999999842 22222222221 111010
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADV 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~v 190 (257)
..+..+.+.|++|........... ....+.+++++|+........... .+...... -..|.+
T Consensus 57 ----~~~~~~~i~d~~g~~~~~~~~~~~--------~~~~~~ii~v~d~~d~~s~~~~~~---~~~~~~~~~~~~~~pil 121 (176)
T d1fzqa_ 57 ----SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVL 121 (176)
T ss_dssp ----ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHH---HHHHHTTCGGGTTCCEE
T ss_pred ----cCCeeEeEeeccccccchhHHHHH--------hhccceeEEeeccccccchhhhhh---hhhhhhhhhccCCCeEE
Confidence 224567789999976544433211 234689999999986432211100 00111111 124678
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++.||+|+.++.+ ...+.+.+.. . .....++ .|++++.|++++++.+
T Consensus 122 lv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l 172 (176)
T d1fzqa_ 122 IFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (176)
T ss_dssp EEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred EEEEecccccccc----HHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 8899999987654 3444444332 1 1223455 6999999999987653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=99.21 E-value=6.1e-11 Score=95.21 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=99.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+++++|++|+||||++-+|..+ ..|+++++++.|... .+.-.++-.... .++ .+..+....++.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a~~l~i----------~~~~~~~~~d~~ 74 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKRLSI----------PVIQGPEGTDPA 74 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTHHHHHHHHHHHHTC----------CEECCCTTCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc-ccchhhHhhcccccCc----------eEEeccCCccHH
Confidence 458899999999999999999764 568999999999654 332222211100 000 001112233455
Q ss_pred HHHHHHHH--hcCCCCEEEEecCCCCCc-HHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 109 QALEQLVQ--RKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 109 ~~l~~~~~--~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+.+... +..++++|||||+|.... ....+.+. +..... .......+++|+|+.......... . .+
T Consensus 75 ~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~------~-~~ 147 (207)
T d1okkd2 75 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA------K-KF 147 (207)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH------H-HH
T ss_pred HHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH------H-Hh
Confidence 55443321 235789999999995542 33332221 011110 112345789999999877654432 1 12
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.+.-..+-++++|.|....- ..+.......+ .+|..-+.++ ++++|.
T Consensus 148 ~~~~~~~~lI~TKlDet~~~------G~~l~~~~~~~--~Pi~~i~~Gq-~p~Dl~ 194 (207)
T d1okkd2 148 HEAVGLTGVIVTKLDGTAKG------GVLIPIVRTLK--VPIKFVGVGE-GPDDLQ 194 (207)
T ss_dssp HHHHCCSEEEEECTTSSCCC------TTHHHHHHHHC--CCEEEEECSS-STTCEE
T ss_pred hhccCCceEEEeccCCCCCc------cHHHHHHHHHC--CCEEEEeCCC-ChHhCc
Confidence 23334789999999976542 33334343332 3454334453 466553
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.21 E-value=1.6e-12 Score=103.75 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH-HH-hhhccCCChhHHHHHHhhcC-EEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF-QI-DKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~-~~-~~~~~~~~~~~~~~ql~~~~-vivlNK~D 197 (257)
..+.||||||-.. +... .......+|.+++|+|+..+.. .. .. .......++.+. ++++||+|
T Consensus 78 ~~~~~iDtPGh~~---f~~~-----~~~~~~~~d~~ilvvda~~g~~~~~t~e------~~~~~~~~~~~~iiv~inK~D 143 (195)
T d1kk1a3 78 RRVSFIDAPGHEA---LMTT-----MLAGASLMDGAILVIAANEPCPRPQTRE------HLMALQIIGQKNIIIAQNKIE 143 (195)
T ss_dssp EEEEEEECSSHHH---HHHH-----HHHCGGGCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred eeEeeeccchhhh---hhHH-----hhcccccccccccccchhhhhhhhhhHH------HHHHHHHhcCccceeeeeccc
Confidence 4578999999432 2221 1223445799999999987632 11 11 122344555565 55799999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCC-CCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINS-LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~-~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+.......+...++..++ .++++ +|+.++.|+++|++.+.
T Consensus 144 ~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~ 190 (195)
T d1kk1a3 144 LVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 190 (195)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 99876543445556666665443 34554 89999999999987663
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=3.9e-11 Score=96.75 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=98.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.-+++++|++|+||||++-+|..+ .+++++++++.|.-. .+...++-.... -++.+ .......++.
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R-~gA~eQL~~~a~~l~i~~----------~~~~~~~d~~ 79 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWGERVGATV----------ISHSEGADPA 79 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHHHHHTCEE----------ECCSTTCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc-cchhHHHHHHhhhcCccc----------cccCCCCcHH
Confidence 337899999999999999999754 458899999999654 333333222100 00000 0011223444
Q ss_pred HHHHHHH--HhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 109 QALEQLV--QRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 109 ~~l~~~~--~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+.... ....++|+|||||+|..+. ...++.+. +...... ....+.+++|+|+......+... . .+
T Consensus 80 ~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~------~-~~ 152 (213)
T d1vmaa2 80 AVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA------K-IF 152 (213)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH------H-HH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh------h-hh
Confidence 4333322 1245789999999996654 33332221 1111111 01245689999998876654432 1 12
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.+.-..+-++++|.|.... ...+.......+ .+|..-+.+ .++++|
T Consensus 153 ~~~~~~~~lI~TKlDe~~~------~G~~l~~~~~~~--~Pi~~i~~G-q~v~Dl 198 (213)
T d1vmaa2 153 KEAVNVTGIILTKLDGTAK------GGITLAIARELG--IPIKFIGVG-EKAEDL 198 (213)
T ss_dssp HHHSCCCEEEEECGGGCSC------TTHHHHHHHHHC--CCEEEEECS-SSGGGE
T ss_pred ccccCCceEEEecccCCCc------ccHHHHHHHHHC--CCEEEEeCC-CCcccC
Confidence 2333478999999997644 234444444333 344433333 345554
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=99.20 E-value=4.7e-11 Score=95.98 Aligned_cols=175 Identities=18% Similarity=0.146 Sum_probs=95.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+++++|++|+||||++-+|..+ ..++++++++.|... .+.-.++-.... .++.+. ......++..
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a~~l~v~~~----------~~~~~~~~~~ 79 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLGEKVGVPVL----------EVMDGESPES 79 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHHHHHHHHHHTCCEE----------ECCTTCCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc-chHHHHHHHHHHhcCCccc----------cccccchhhH
Confidence 57899999999999999999753 458999999998654 332222211100 001000 0111223332
Q ss_pred HHHHH--HHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 110 ALEQL--VQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 110 ~l~~~--~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
..... ..+..+.|+|||||+|.... ...++.+. .+......+.+++|+|+......++. ...+.+.-
T Consensus 80 ~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~---~~~~~~~~~~~llv~~a~~~~~~~~~-------~~~f~~~~ 149 (207)
T d1ls1a2 80 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV-------ARAFDEKV 149 (207)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTHHHHHH-------HHHHHHHT
T ss_pred HHHHHHHHHhhccCcceeecccccchhhhhhHHHHH---HHHhhcCCceEEEEeccccchhHHHH-------HHHHHhhC
Confidence 22211 11245789999999995543 33333321 22334456788999999887765442 12222323
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
..+-++++|.|.... ...+........ .+|.....++ .+++|
T Consensus 150 ~~~~~I~TKlDe~~~------~G~~l~~~~~~~--~Pi~~i~~Gq-~pedl 191 (207)
T d1ls1a2 150 GVTGLVLTKLDGDAR------GGAALSARHVTG--KPIYFAGVSE-KPEGL 191 (207)
T ss_dssp CCCEEEEECGGGCSS------CHHHHHHHHHHC--CCEEEEC-------CC
T ss_pred CCCeeEEeecCcccc------chHHHHHHHHHC--CCEEEEeCCC-Chhhc
Confidence 467899999997554 344555444433 2444334443 34433
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.19 E-value=3.5e-12 Score=98.51 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.+.||+|......... ......+.+++++|+............ +...+.+ -..|.++|.||+
T Consensus 45 ~~~~~~~D~~G~~~~~~~~~--------~~~~~~~~~i~v~d~~d~~~~~~~~~~---~~~~~~~~~~~~~p~iiv~nK~ 113 (165)
T d1ksha_ 45 GFKLNIWDVGGQKSLRSYWR--------NYFESTDGLIWVVDSADRQRMQDCQRE---LQSLLVEERLAGATLLIFANKQ 113 (165)
T ss_dssp TEEEEEEEECCSHHHHTTGG--------GGCTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTCEEEEEEECT
T ss_pred ccceeeeecCcchhhhhHHH--------hhhhhhhcceeeeecccchhHHHHHHh---hhhhhhhcccCCCceEEEEecc
Confidence 45688999999432111111 122356899999998754332111100 1112211 123668888999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... .......+.. + ....+++ .|++++.|+.++++.+
T Consensus 114 Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 158 (165)
T d1ksha_ 114 DLPGALS----CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158 (165)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccC----HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 9976544 3444443322 1 1223455 6999999999887654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=2.2e-11 Score=97.23 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=67.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.|.|+|+|++|||||||+|+|+..... ++. ..+.. ...+
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~---------~~t--t~~~~-------------~~~~----------------- 41 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR---------PTV--VSQEP-------------LSAA----------------- 41 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC---------CBC--CCSSC-------------EEET-----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---------CeE--Eecce-------------EEEE-----------------
Confidence 479999999999999999999963211 121 00000 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCC-ChhHHHHH---Hhh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS-SYPEAIHQ---IAF 187 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~-~~~~~~~q---l~~ 187 (257)
...+..+.++||||........... ........+.++.++|+......+....... ........ .+.
T Consensus 42 -----~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (209)
T d1nrjb_ 42 -----DYDGSGVTLVDFPGHVKLRYKLSDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 112 (209)
T ss_dssp -----TGGGSSCEEEECCCCGGGTHHHHHH----HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred -----EeCCeEEEEEecccccchhhHHHHH----HHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccC
Confidence 0234567899999976543322211 1123445678899999876432221110000 00111111 234
Q ss_pred cCEEEEeCCCCCCcCC
Q 025133 188 ADVVILNKVDLVSPER 203 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~ 203 (257)
|.++|+||+|+.+...
T Consensus 113 piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 113 DILIACNKSELFTARP 128 (209)
T ss_dssp CEEEEEECTTSTTCCC
T ss_pred CeEEEEEeecccccCc
Confidence 6788999999987654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=4.2e-11 Score=96.21 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=55.4
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE-EEEeCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKV 196 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v-ivlNK~ 196 (257)
..+..+.||||||..+...-. +.....+|.+|+|+||..+....... .......++.+.+ +++||+
T Consensus 64 ~~~~~i~iiDtPGh~df~~~~--------~~~~~~aD~avlVvda~~Gv~~qt~~-----~~~~~~~~gi~~iiv~iNK~ 130 (204)
T d2c78a3 64 TAKRHYSHVDCPGHADYIKNM--------ITGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFMNKV 130 (204)
T ss_dssp CSSCEEEEEECCCSGGGHHHH--------HHHHTTCSSEEEEEETTTCCCHHHHH-----HHHHHHHTTCCCEEEEEECG
T ss_pred eCCeEEEEEeCCCchhhHHHH--------HHHHHHCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEEec
Confidence 456789999999976543322 23445689999999998776654321 2334455566765 569999
Q ss_pred CCCCcCCC-cchHHHHHHHHHHh
Q 025133 197 DLVSPERS-GDSLDELEKEIHEI 218 (257)
Q Consensus 197 D~~~~~~~-~~~l~~~~~~l~~~ 218 (257)
|+++.++. .+..++++..+...
T Consensus 131 D~~~~~~~~~~~~~~i~~~l~~~ 153 (204)
T d2c78a3 131 DMVDDPELLDLVEMEVRDLLNQY 153 (204)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHhc
Confidence 99875432 12234555555543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=6.4e-11 Score=92.09 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=56.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----------hhcCEE
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----------AFADVV 191 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----------~~~~vi 191 (257)
.+.+.||+|.......... .....+.+++++|....... .. +.....++ ..|.++
T Consensus 53 ~~~~~d~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~~~~piil 117 (175)
T d1ky3a_ 53 TMQVWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNASSF-EN------IKSWRDEFLVHANVNSPETFPFVI 117 (175)
T ss_dssp EEEEECCC----------C--------CSTTCCEEEEEEETTCHHHH-HT------HHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred cceeeccCCchhhhhHHHH--------HhhccceEEEEeeccccccc-ch------hhhcchhhhhhhhhcccccCcEEE
Confidence 3568899996544433221 12346889999999865542 11 11122222 236788
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.||+|+.+..+. -..+...++.++. ...+++ .|++++.|+++++..+
T Consensus 118 v~nK~Dl~~~~~~-v~~~~~~~~~~~~-~~~~~~e~SA~~g~gv~e~f~~l 166 (175)
T d1ky3a_ 118 LGNKIDAEESKKI-VSEKSAQELAKSL-GDIPLFLTSAKNAINVDTAFEEI 166 (175)
T ss_dssp EEECTTSCGGGCC-SCHHHHHHHHHHT-TSCCEEEEBTTTTBSHHHHHHHH
T ss_pred Eecccchhhhhcc-hhHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHH
Confidence 9999998764331 1123444444444 333455 7999999999987654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.12 E-value=1e-11 Score=96.74 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=63.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~ 196 (257)
...+.+.|+||........... ....+.+++|+|+............ +..... ....|.+++.||+
T Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~--------~~~~~~ii~v~D~s~~~~~~~~~~~---l~~~~~~~~~~~~piiiv~NK~ 123 (173)
T d1e0sa_ 55 NVKFNVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQ 123 (173)
T ss_dssp TEEEEEEEESCCGGGHHHHGGG--------TTTCCEEEEEEETTCGGGHHHHHHH---HHHHHTSGGGTTCEEEEEEECT
T ss_pred ceeeEEecCCCcchhhhHHHhh--------hcccceEEEEEecccchhHHHHHHH---HHHHhhhcccccceeeeeeecc
Confidence 3567799999977655544321 2357899999999764332211100 111111 1134668899999
Q ss_pred CCCCcCCCcchHHHHHHHH--HHhCC-CCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEI--HEINS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l--~~~~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ...+...+ ..... ...++ .|++++.|++++++.+
T Consensus 124 Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l 168 (173)
T d1e0sa_ 124 DLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168 (173)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred ccccccc----HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence 9976543 34444443 22222 23454 6999999999988765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.11 E-value=1.8e-11 Score=97.72 Aligned_cols=100 Identities=21% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D 197 (257)
.+..+.++||||-.+...- .......+|.+++||||..+....... .......+..+. ++++||+|
T Consensus 64 ~~~~~~~iDtPGh~~f~~~--------~~~~~~~aD~allVVda~~G~~~QT~~-----~~~~a~~~~~~~iIv~iNK~D 130 (196)
T d1d2ea3 64 AARHYAHTDCPGHADYVKN--------MITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKAD 130 (196)
T ss_dssp SSCEEEEEECSSHHHHHHH--------HHHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGG
T ss_pred ceeeEEeecCcchHHHHHH--------HHHHHhhcCeEEEEEEcCCCCchhHHH-----HHHHHHHhcCCcEEEEEeccc
Confidence 4567899999995433221 123456689999999999876543321 122333445444 55789999
Q ss_pred CCCcCCCcc-hHHHHHHHHHHhCC---CCEEE-EeecCC
Q 025133 198 LVSPERSGD-SLDELEKEIHEINS---LAHVI-RSVRCQ 231 (257)
Q Consensus 198 ~~~~~~~~~-~l~~~~~~l~~~~~---~a~i~-~s~~~~ 231 (257)
++..++..+ ...+++..++.... .++++ .|+..+
T Consensus 131 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g 169 (196)
T d1d2ea3 131 AVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169 (196)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEcccc
Confidence 987543212 22355666665543 24454 677765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.11 E-value=1.9e-11 Score=101.64 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=70.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
....++++|.+|+|||||+|.|+ |++++.++..++.+..... ....
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~il----g~~~~~vs~~~~~T~~~~~-------------~~~~----------------- 76 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSII----GERVVSISPFQSEGPRPVM-------------VSRS----------------- 76 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH----TSCCSCCCSSSCCCSSCEE-------------EEEE-----------------
T ss_pred CCcEEEEECCCCCcHHHHHHHHh----CCCceeecCCCCcceeEEE-------------EEEE-----------------
Confidence 34468899999999999999999 5555555544443111000 0000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHH-
Q 025133 111 LEQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIH- 183 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~- 183 (257)
..+..+.||||||+.++. ....... ........+.+++|++... +...... ....+.
T Consensus 77 -------~~g~~i~viDTPGl~~~~~~~~~~~~~i~---~~~~~~~~~~il~v~~~~~~r~~~~~~~------~l~~l~~ 140 (257)
T d1h65a_ 77 -------RAGFTLNIIDTPGLIEGGYINDMALNIIK---SFLLDKTIDVLLYVDRLDAYRVDNLDKL------VAKAITD 140 (257)
T ss_dssp -------ETTEEEEEEECCCSEETTEECHHHHHHHH---HHTTTCEECEEEEEEESSCCCCCHHHHH------HHHHHHH
T ss_pred -------eccEEEEEEeeecccCCcchHHHHHHHHH---HHHhcCCCCeEEEEEECCCCCCCHHHHH------HHHHHHH
Confidence 234568999999987542 2222111 1123356778888887653 2222111 111111
Q ss_pred ----HHhhcCEEEEeCCCCCCcCC
Q 025133 184 ----QIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 184 ----ql~~~~vivlNK~D~~~~~~ 203 (257)
.+....++|+||+|.+.++.
T Consensus 141 ~fg~~~~~~~ivv~t~~D~~~~~~ 164 (257)
T d1h65a_ 141 SFGKGIWNKAIVALTHAQFSPPDG 164 (257)
T ss_dssp HHCGGGGGGEEEEEECCSCCCGGG
T ss_pred HcchhhhhCEEEEEECcccCCcCC
Confidence 22245689999999987544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=4.7e-11 Score=92.56 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=57.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.+.||+|......+...+ ...++.+++|+|........... . +...+.+. ..|.++|.||+
T Consensus 48 ~~l~i~D~~g~e~~~~~~~~~--------~~~~d~~ilv~d~t~~~s~~~~~-~---~~~~i~~~~~~~~~piilvgnK~ 115 (168)
T d2gjsa1 48 ASLMVYDIWEQDGGRWLPGHC--------MAMGDAYVIVYSVTDKGSFEKAS-E---LRVQLRRARQTDDVPIILVGNKS 115 (168)
T ss_dssp EEEEEEECC-------CHHHH--------HTSCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHCC--CCCEEEEEECT
T ss_pred cceeeeecccccccceecccc--------hhhhhhhceeccccccccccccc-c---ccchhhcccccccceEEEeeccc
Confidence 456789999965433222211 23478999999988654432210 0 11111111 13567888999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+. ...+...+.+..+ ++.+ .|++++.|+++++..+
T Consensus 116 Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~v~~~f~~l 157 (168)
T d2gjsa1 116 DLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFEGV 157 (168)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHHHHH
T ss_pred chhhhcch--hHHHHHHHHHhcC--CEEEEEeCCCCcCHHHHHHHH
Confidence 99765432 1334444444433 4555 7899999999887654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.06 E-value=3.5e-11 Score=94.34 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=79.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|||||||+++|.. ..........|. ..... .
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~----~~~~~~~~t~~~----~~~~~-------------~-------------------- 57 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI----GEVVTTKPTIGF----NVETL-------------S-------------------- 57 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC----SEEEEECSSTTC----CEEEE-------------E--------------------
T ss_pred EEEEECCCCCCHHHHHHHHhc----CCCCccccccce----EEEEE-------------e--------------------
Confidence 467999999999999999973 222222211111 10000 0
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADV 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~v 190 (257)
..+..+.+.|++|......... ......+.+++|+|............. +...+.. -..|.+
T Consensus 58 ----~~~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~ii~v~d~~d~~s~~~~~~~---l~~~~~~~~~~~~pil 122 (182)
T d1moza_ 58 ----YKNLKLNVWDLGGQTSIRPYWR--------CYYADTAAVIFVVDSTDKDRMSTASKE---LHLMLQEEELQDAALL 122 (182)
T ss_dssp ----ETTEEEEEEEEC----CCTTGG--------GTTTTEEEEEEEEETTCTTTHHHHHHH---HHHHTTSSTTSSCEEE
T ss_pred ----eCCEEEEEEecccccccchhHH--------hhhccceeEEEEeeecccccchhHHHH---HHHHHHhhccCCcceE
Confidence 2235577999999654322211 112357899999998754332111000 0011111 124667
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHH--HhCC-CCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIH--EINS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~--~~~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|.||+|+.+... ..++...+. .... ...++ .|++++.|++++++.+
T Consensus 123 iv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l 173 (182)
T d1moza_ 123 VFANKQDQPGALS----ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 173 (182)
T ss_dssp EEEECTTSTTCCC----HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred EEEEeeccccccC----HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHH
Confidence 8889999976543 344444432 1122 23455 7999999999887654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=8.4e-11 Score=90.62 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~vivlNK~D~~ 199 (257)
..+.+.||+|.......... ....++.+++|+|....... +..... +.....+. ..+.++|.||+|+.
T Consensus 51 ~~~~i~d~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~-~~~~~~--~~~i~~~~~~~~iilVgnK~Dl~ 119 (164)
T d1z2aa1 51 VRLMLWDTAGQEEFDAITKA--------YYRGAQACVLVFSTTDRESF-EAISSW--REKVVAEVGDIPTALVQNKIDLL 119 (164)
T ss_dssp EEEEEECCTTGGGTTCCCHH--------HHTTCCEEEEEEETTCHHHH-HTHHHH--HHHHHHHHCSCCEEEEEECGGGG
T ss_pred eeeeeeccCCccchhhhhhh--------hhccCceEEEEEeccchhhh-hhcccc--cccccccCCCceEEEeeccCCcc
Confidence 45678999995543222111 12357899999999875543 211100 11122222 23556777999998
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..+. ..++..++.++.+ ++++ .|++++.|+++++..+
T Consensus 120 ~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e~f~~l 158 (164)
T d1z2aa1 120 DDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEVFKYL 158 (164)
T ss_dssp GGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHHHH
T ss_pred cceee--eehhhHHHHHHcC--CEEEEeccCCCcCHHHHHHHH
Confidence 75443 2344555555544 4566 6999999999987654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.04 E-value=3.9e-11 Score=92.54 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=58.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.+.|++|.......... -....+.+++|+|+...... ...... +.....+ -..|.++|.||+
T Consensus 46 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~-~~~~~~--~~~~~~~~~~~~~pi~lv~nK~ 114 (164)
T d1zd9a1 46 NVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKI-EASKNE--LHNLLDKPQLQGIPVLVLGNKR 114 (164)
T ss_dssp TEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGH-HHHHHH--HHHHHTCGGGTTCCEEEEEECT
T ss_pred eEEEEEeeccccccccccccc--------cccccchhhccccccccccc-chhhhh--hhhhhhhhcccCCcEEEEEecc
Confidence 345779999994322211111 12347899999998754321 111000 1111111 124677889999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... ...+.+.+.. . .....++ +|++++.|+++++..+
T Consensus 115 Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l 159 (164)
T d1zd9a1 115 DLPGALD----EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159 (164)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred ccchhhh----HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHH
Confidence 9876543 3444443322 1 1233445 7899999999887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.04 E-value=1.8e-10 Score=89.35 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=80.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++|+|.+|||||||+++|.. .+.+......+. .. . ...
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~----~~~~~~~~~~~~----~~---------~----~~~-------------------- 55 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSM----NEVVHTSPTIGS----NV---------E----EIV-------------------- 55 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHT----TSCEEEECCSCS----SC---------E----EEE--------------------
T ss_pred EEEEECCCCCCHHHHHHHHhc----CCCCccccccce----eE---------E----EEe--------------------
Confidence 477899999999999999984 333322222221 00 0 000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH----HHHhhcC
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI----HQIAFAD 189 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~----~ql~~~~ 189 (257)
..+..+.+.|++|.......... .....+.+++++|............ ..... ..-..|.
T Consensus 56 ----~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~i~v~d~~d~~~~~~~~~----~~~~~~~~~~~~~~p~ 119 (177)
T d1zj6a1 56 ----INNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTRE----ELYKMLAHEDLRKAGL 119 (177)
T ss_dssp ----ETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHH----HHHHHHTSGGGTTCEE
T ss_pred ----ecceEEEEeccccccccccchhh--------hhccceeeeeecccccccchhhhhh----hhhhhhhcccccceEE
Confidence 22355778888885433222111 1223567889998875432211100 00011 1123467
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+..... ..++...++.. ...++++ .|++++.|++++++.+
T Consensus 120 iiv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L 171 (177)
T d1zj6a1 120 LIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 171 (177)
T ss_dssp EEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred EEEEEcccccccCc----HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 88899999876654 34444444322 2234566 7999999999987654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.03 E-value=8.9e-11 Score=90.68 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=58.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
+.++.|+|++|||||||+++|+.+ .+|.+++++.++.+... +.|...... .......+.++|.||...
T Consensus 1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~~~~~~~~~ds~r~~~-----~g~~~~~~~~~~~~~~~~ 75 (165)
T d1xjca_ 1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHER-----AGAVATAVEGDGLLQLHL 75 (165)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-------------------------CSEEEEEETTEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCccccchhhccccHHHHh-----hccccccccChHHHHHHh
Confidence 468999999999999999999875 56899999999876411 122222211 112344556677776643
Q ss_pred h----hHHHHHHHHHHhcCCCCEEEEecCCCCCc
Q 025133 105 H----SLVQALEQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 105 ~----~~~~~l~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
. .+...+. ++ ....+|++++|..+...+
T Consensus 76 ~~~~~~~~~~~~-~~-~~~~~D~iivEg~~~~~~ 107 (165)
T d1xjca_ 76 RRPLWRLDDVLA-LY-APLRLDLVLVEGYKQERH 107 (165)
T ss_dssp CCSCCCHHHHHH-HH-GGGCCSEEEEECCTTSCS
T ss_pred hccccchhhHHH-HH-hhcccCeEeeecccccCc
Confidence 2 2322222 22 245799999998886543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=2.7e-09 Score=83.48 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.+.||+|........ ......++.+++++|......... .... +.....+. ..|.++|.|
T Consensus 51 ~~~~~~d~~g~~~~~~~~--------~~~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~i~~~~~~~~~~~ip~ilv~n 119 (184)
T d1vg8a_ 51 VTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKT-LDSW--RDEFLIQASPRDPENFPFVVLGN 119 (184)
T ss_dssp EEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHT-HHHH--HHHHHHHHCCSSGGGSCEEEEEE
T ss_pred EEEEeeecCCcccccccc--------cccccCccEEEEeecccchhhhhc-chhh--HHHHHHHhccccccCCCEEEEEE
Confidence 456789999965432211 112335689999999975433211 1000 11121211 236788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+.... .+.........+ ..+++ .|++++.|+++++...
T Consensus 120 K~Dl~~~~~~---~~~~~~~~~~~~-~~~~~e~Sak~~~gI~e~f~~l 163 (184)
T d1vg8a_ 120 KIDLENRQVA---TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 163 (184)
T ss_dssp CTTSSCCCSC---HHHHHHHHHHTT-SCCEEECBTTTTBSHHHHHHHH
T ss_pred eecccccchh---HHHHHHHHHHhc-CCeEEEEcCCCCcCHHHHHHHH
Confidence 9998765432 344444444433 34455 7999999999988754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.4e-09 Score=84.43 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.+.|++|..+....... .....+.+++++|......... ... +...+.++ ..|.++|.
T Consensus 55 ~~~~i~d~~g~~~~~~~~~~--------~~~~~~~~i~~~d~~~~~s~~~-~~~---~~~~i~~~~~~~~~~~~piilVg 122 (174)
T d1wmsa_ 55 VTMQIWDTAGQERFRSLRTP--------FYRGSDCCLLTFSVDDSQSFQN-LSN---WKKEFIYYADVKEPESFPFVILG 122 (174)
T ss_dssp EEEEEEECCCCGGGHHHHGG--------GGTTCSEEEEEEETTCHHHHHT-HHH---HHHHHHHHHTCSCTTTSCEEEEE
T ss_pred eeEeeecccCcceehhhhhh--------hhhccceEEEEEeeecccccch-hhh---HHHHHHHHhccccCCCceEEEec
Confidence 44668899997665443321 2335688999999986543211 100 11111111 24678899
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
||+|+.+..- ..++...+.++.+. .+++ .|++++.|+++++..
T Consensus 123 nK~Dl~~~~v---~~~~~~~~~~~~~~-~~~~e~Sak~~~gI~e~f~~ 166 (174)
T d1wmsa_ 123 NKIDISERQV---STEEAQAWCRDNGD-YPYFETSAKDATNVAAAFEE 166 (174)
T ss_dssp ECTTCSSCSS---CHHHHHHHHHHTTC-CCEEECCTTTCTTHHHHHHH
T ss_pred cccchhhccC---cHHHHHHHHHHcCC-CeEEEEcCCCCcCHHHHHHH
Confidence 9999865332 34566666665433 3455 789999999998754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=5.5e-10 Score=86.37 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||||........... ...++.+|+|+|............ +.....+. ..+.+++.||+|
T Consensus 54 ~~l~~wDt~G~e~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~iivv~nK~D 121 (169)
T d3raba_ 54 IKLQIWDTAGQERYRTITTAY--------YRGAMGFILMYDITNEESFNAVQD----WSTQIKTYSWDNAQVLLVGNKCD 121 (169)
T ss_dssp EEEEEEEECCSGGGHHHHHTT--------TTTCCEEEEEEETTCHHHHHTHHH----HHHHHHHHCCSCCEEEEEEECTT
T ss_pred EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECccchhhhhhhh----hhhhhhcccCCcceEEEEEeecc
Confidence 346689999976544443321 234689999999987654322110 11122222 123466779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... ..++.....++.+ .+.+ .|++++.|+++++..+
T Consensus 122 ~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~f~~l 162 (169)
T d3raba_ 122 MEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVKQTFERL 162 (169)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccc--chhhhHHHHHHcC--CEEEEecCCCCcCHHHHHHHH
Confidence 8765432 1244444445443 4566 6889999999887654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.00 E-value=4e-10 Score=87.21 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.|++|..+...+.... ....+.+++|+|........... .. +....... ..|.++|.||+|
T Consensus 52 ~~l~i~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piiivgnK~D 120 (168)
T d1u8za_ 52 VQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA-DF--REQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEECCC---CHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHCCTTSCEEEEEECGG
T ss_pred ccccccccccccchhhhhhhc--------ccccceeEEEeeccchhhhhhHH-HH--HHHHHHhhCCCCCcEEEEecccc
Confidence 456789999987765554322 12468899999988654432210 00 11111221 235678889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++..++.++.+ ++.+ .|++++.|+++++...
T Consensus 121 l~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~f~~l 161 (168)
T d1u8za_ 121 LEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccc--cHHHHHHHHHHcC--CeEEEEcCCCCcCHHHHHHHH
Confidence 8654332 2355566666554 4556 6899999999887643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=8.8e-11 Score=90.23 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=35.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++|+++|+||+|||||||+++|+++ .+|.+++++.++++.
T Consensus 1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~ 42 (170)
T d1np6a_ 1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 42 (170)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence 4799999999999999999999875 568999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=7.9e-11 Score=103.90 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred CCCEEEEecCCCCCc----HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeC
Q 025133 120 RLDHILLETTGLANP----APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~----~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK 195 (257)
.+.++|+||||+... ....+.. ....+|.+++++|..-...... +...+.+.+.+.++|+||
T Consensus 106 ~~~~~l~DtPG~~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~~d~~-------l~~~l~~~~k~~~~V~nK 171 (400)
T d1tq4a_ 106 IPNVVFWDLPGIGSTNFPPDTYLEKM-------KFYEYDFFIIISATRFKKNDID-------IAKAISMMKKEFYFVRTK 171 (400)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHT-------TGGGCSEEEEEESSCCCHHHHH-------HHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEeCCCcccccccHHHHHHHh-------hhhcceEEEEecCCCCCHHHHH-------HHHHHHHcCCCEEEEEeC
Confidence 467899999997643 2222211 2335678888887653322222 344556667899999999
Q ss_pred CCCC
Q 025133 196 VDLV 199 (257)
Q Consensus 196 ~D~~ 199 (257)
+|..
T Consensus 172 ~D~~ 175 (400)
T d1tq4a_ 172 VDSD 175 (400)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9965
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=9e-10 Score=87.83 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-|+|+|++|+|||||+|+|+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999963
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=9.8e-10 Score=84.89 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.+.||+|........... ...++.+++|+|........... .+...+.+. ..|.++|.||
T Consensus 50 ~~l~~~d~~g~~~~~~~~~~~--------~~~a~~~ilv~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~piilVgnK 117 (171)
T d2erxa1 50 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSITSRQSLEELK----PIYEQICEIKGDVESIPIMLVGNK 117 (171)
T ss_dssp EEEEEEECCSCSSCHHHHHHH--------HHHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHC---CCCEEEEEEC
T ss_pred ceecccccccccccccccccc--------ccceeEEEEEeecccccchhccc----chhhhhhhhhccCCCCcEEEEeec
Confidence 346689999987665544322 12468899999998654432210 011112221 2356778899
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+....+. ..++..++.++.+ ++.+ .|++++.|+++++..+.
T Consensus 118 ~Dl~~~~~v--~~~e~~~~~~~~~--~~~~e~Sak~~~~v~e~f~~l~ 161 (171)
T d2erxa1 118 CDESPSREV--QSSEAEALARTWK--CAFMETSAKLNHNVKELFQELL 161 (171)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccc--cHHHHHHHHHHcC--CeEEEEcCCCCcCHHHHHHHHH
Confidence 998765443 1344455555443 4556 68999999999887653
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.97 E-value=4.8e-10 Score=91.03 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
+..+.||||||-.....-+ ......+|.+++||||..+....... .......++.+ .++++||+|+
T Consensus 88 ~~~~~iiD~PGH~dfv~~~--------~~g~~~aD~ailVvda~~G~~~Qt~e-----~~~~~~~~gv~~iiv~vNK~D~ 154 (222)
T d1zunb3 88 KRKFIIADTPGHEQYTRNM--------ATGASTCDLAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL 154 (222)
T ss_dssp SEEEEEEECCCSGGGHHHH--------HHHHTTCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred ceEEEEEeccchhhhhhhh--------ccccccCceEEEEeccccCcccchHH-----HHHHHHHcCCCEEEEEEEcccc
Confidence 4568899999976543322 12344579999999998776554321 23334455544 4678999999
Q ss_pred CCcCCC--cchHHHHHHHHHHhCC--C-CEEE-EeecCCcChhh
Q 025133 199 VSPERS--GDSLDELEKEIHEINS--L-AHVI-RSVRCQVDLSE 236 (257)
Q Consensus 199 ~~~~~~--~~~l~~~~~~l~~~~~--~-a~i~-~s~~~~~~~~~ 236 (257)
++..+. .+..+++...+++..- . .+++ +|+.+|.|+.+
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 975431 1223455555655432 2 2333 69999887754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6e-10 Score=85.53 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+-+.||+|........... ....+.+++++|........... . +.....+. ..+.++|.||+|
T Consensus 49 ~~~~i~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~i~-~---~~~~~~~~~~~~~~iilvgnK~D 116 (164)
T d1yzqa1 49 IRLQLWDTAGQERFRSLIPSY--------IRDSAAAVVVYDITNVNSFQQTT-K---WIDDVRTERGSDVIIMLVGNKTD 116 (164)
T ss_dssp EEEEEEEECCSGGGGGGHHHH--------HTTCSEEEEEEETTCHHHHHTHH-H---HHHHHHHHHTTSSEEEEEEECTT
T ss_pred eeeeecccCCcchhccchHHH--------hhccceEEEeeccccccchhhhH-h---hHHHHHHhcCCCceEEEEecccc
Confidence 345689999976543333211 23468999999998765432211 0 11111111 234567779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
+.+..+. ..++..+..+..+ ++.+ .|++++.++++++..+...++
T Consensus 117 l~~~~~~--~~~~~~~~~~~~~--~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 117 LADKRQV--SIEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred hhhhhhh--hHHHHHHHHHHcC--CEEEEecCCCCcCHHHHHHHHHHhhC
Confidence 8765442 3455555555543 4555 799999999999887654433
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.6e-09 Score=82.57 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ...++.+++|+|............ +...+.+. ..+.++|.||+|
T Consensus 54 ~~l~i~Dt~G~e~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~----~~~~i~~~~~~~~~~ilvgnK~D 121 (171)
T d2ew1a1 54 VKLQIWDTAGQERFRSITQSY--------YRSANALILTYDITCEESFRCLPE----WLREIEQYASNKVITVLVGNKID 121 (171)
T ss_dssp EEEEEEEECCSGGGHHHHGGG--------STTCSEEEEEEETTCHHHHHTHHH----HHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHH--------HhccceEEEeeecccchhhhhhhh----hhhhhcccccccccEEEEEeecc
Confidence 446789999965444333211 234688999999876543211110 11122222 234577789999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
+....+. ..++...+.+..+ .+++ .|++++.|+++++..
T Consensus 122 ~~~~~~v--~~~~~~~~~~~~~--~~~~~~SAktg~gV~e~f~~ 161 (171)
T d2ew1a1 122 LAERREV--SQQRAEEFSEAQD--MYYLETSAKESDNVEKLFLD 161 (171)
T ss_dssp GGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHH
T ss_pred cccccch--hhhHHHHHHHhCC--CEEEEEccCCCCCHHHHHHH
Confidence 8765442 2344444444433 2344 799999999998653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.1e-09 Score=85.17 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-------hcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-------FADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-------~~~vivl 193 (257)
..+.+.||+|..+...+...+ ....+.+++|+|......... ....+.++. .+.+++.
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~~i~~~~ 120 (177)
T d1x3sa1 56 AKLAIWDTAGQERFRTLTPSY--------YRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG 120 (177)
T ss_dssp EEEEEEEECSSGGGCCSHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred cEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCcccccc-------chhhhhhhcccccccceeeEEEe
Confidence 457789999965433222211 234678999999876443211 122223321 2447889
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||.|.....- ...+.....++.+ ..++ .|++++.|+++++..+.
T Consensus 121 nk~d~~~~~v---~~~~~~~~~~~~~--~~~~e~Sa~tg~gv~e~f~~l~ 165 (177)
T d1x3sa1 121 NKIDKENREV---DRNEGLKFARKHS--MLFIEASAKTCDGVQCAFEELV 165 (177)
T ss_dssp ECTTSSSCCS---CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHH
T ss_pred eccccccccc---cHHHHHHHHHHCC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 9999765442 2344555555543 3555 78999999999887653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=98.94 E-value=7.9e-11 Score=89.50 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~ 196 (257)
...+.+.|++|........... ....+.+++++|............. +.....+ . ..+.+++.||.
T Consensus 43 ~~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~k~ 111 (160)
T d1r8sa_ 43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERVNEAREE---LMRMLAEDELRDAVLLVFANKQ 111 (160)
T ss_dssp SCEEEEEECCCCGGGHHHHHHH--------TTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTCEEEEEEECT
T ss_pred eEEEEEecCCCcccchhhhhhh--------hccceeEEEEEEecChHHHHHHHHH---HHHHHHhhcccCceEEEEeecc
Confidence 4668899999977654443221 2235788899988764332111100 1111111 1 23567888999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ..++....... .....++ .|++++.|++++++.+
T Consensus 112 d~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l 156 (160)
T d1r8sa_ 112 DLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (160)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred ccccccc----HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence 9887654 23333322211 1233455 7999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.8e-09 Score=81.16 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ....+.+++|+|..+.... ..... +.....+. ..+.+++.||+|
T Consensus 53 ~~l~i~D~~g~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~iilvgnK~D 120 (166)
T d1z0fa1 53 IKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTY-NHLSS---WLTDARNLTNPNTVIILIGNKAD 120 (166)
T ss_dssp EEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHH-HTHHH---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEeccCCchhHHHHHHHH--------hcCCcEEEEEeccCchHHH-HHHHH---HHHHHHhhccccceEEEEccccc
Confidence 357789999965443333221 1246889999998865432 11100 11222222 234566779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... ..++.....++.+ ++.+ .|++++.|+++++..+
T Consensus 121 l~~~~~~--~~~~~~~~~~~~~--~~~~e~Saktg~~v~e~f~~i 161 (166)
T d1z0fa1 121 LEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVEDAFLEA 161 (166)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred chhhccc--HHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 8655432 2344555555433 4666 7999999999987543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=1.7e-10 Score=87.63 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=81.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+|+|... +++.+....+. ... ..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~----~~~~~~~t~~~----~~~---------------~~------------------- 39 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND----RLATLQPTWHP----TSE---------------EL------------------- 39 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS----CCCCCCCCCSC----EEE---------------EE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCC----CCCeeeceeeE----eEE---------------Ee-------------------
Confidence 3789999999999999999853 22222222221 100 00
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH---HHHHhhcCE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA---IHQIAFADV 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~---~~ql~~~~v 190 (257)
...+....+.|++|.......... .....+.+++++|............. .... ......+.+
T Consensus 40 ---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~ 105 (166)
T d2qtvb1 40 ---AIGNIKFTTFDLGGHIQARRLWKD--------YFPEVNGIVFLVDAADPERFDEARVE---LDALFNIAELKDVPFV 105 (166)
T ss_dssp ---CCTTCCEEEEECCCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHHH---HHHHHTCTTTTTCCEE
T ss_pred ---ccCCeeEEEEeeccchhhhhhHhh--------hhhheeeeeeeccccchhhhhhhhHH---HHhhhhhhccCCceEE
Confidence 022455778898886544332221 12235678889998754332221100 0000 112334667
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHh----------CCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEI----------NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~----------~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++.||.|+..... ..++.+.+... .....++ .|++++.|++++++.+
T Consensus 106 i~~~k~d~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l 163 (166)
T d2qtvb1 106 ILGNKIDAPNAVS----EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163 (166)
T ss_dssp EEEECTTSSSCCC----HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeccccccccCC----HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHH
Confidence 8899999876543 34444443211 1112344 7999999999988653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=1.1e-09 Score=86.59 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.++||+|......+.. . ....++.+++|+|+........... +...+.+.. .+.++|.||+|
T Consensus 55 ~~l~i~Dt~G~e~~~~~~~-----~---~~~~a~~~i~v~d~t~~~s~~~~~~----~~~~~~~~~~~~~~iilv~nK~D 122 (194)
T d2bcgy1 55 VKLQIWDTAGQERFRTITS-----S---YYRGSHGIIIVYDVTDQESFNGVKM----WLQEIDRYATSTVLKLLVGNKCD 122 (194)
T ss_dssp EEEEEECCTTTTTTTCCCG-----G---GGTTCSEEEEEEETTCHHHHHHHHH----HHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhHHHHH-----H---HhccCCEEEEEEeCcchhhhhhHhh----hhhhhhhcccCCceEEEEEeccc
Confidence 4567899999644322111 1 1235789999999986544322110 111222222 25578889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
+...... ..+....+.+..+ ..-+..|++++.|+++++..+.
T Consensus 123 ~~~~~~~--~~~~~~~~~~~~~-~~~~e~SAk~g~gi~e~f~~l~ 164 (194)
T d2bcgy1 123 LKDKRVV--EYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMA 164 (194)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT-CCEEECCTTTCTTHHHHHHHHH
T ss_pred cccccch--hHHHHhhhhhccC-cceEEEecCcCccHHHHHHHHH
Confidence 8875543 2333444444332 2234479999999999876653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.9e-10 Score=88.80 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+-+.||+|......+.. .....++.+++|+|.......... ... +........ .|.++|.||+|
T Consensus 52 ~~l~i~d~~g~~~~~~~~~--------~~~~~~d~~ilv~d~~~~~s~~~~-~~~--~~~i~~~~~~~~~piilvgnK~D 120 (167)
T d1xtqa1 52 YHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVI-KVI--HGKLLDMVGKVQIPIMLVGNKKD 120 (167)
T ss_dssp EEEEEEECCCCCTTCCCCG--------GGTSSCCEEEEEEETTCHHHHHHH-HHH--HHHHHHHHCSSCCCEEEEEECTT
T ss_pred EEeeecccccccccccccc--------hhhhhhhhhhhhcccchhhhhhhh-hhh--hhhhhhcccccccceeeeccccc
Confidence 4466899999765432211 122457899999999865443221 000 111222222 35678899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++...+.++.+ ++.+ .|++++.|+++++..+
T Consensus 121 l~~~r~v--~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~l 161 (167)
T d1xtqa1 121 LHMERVI--SYEEGKALAESWN--AAFLESSAKENQTAVDVFRRI 161 (167)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEECCTTCHHHHHHHHHHH
T ss_pred cccccch--hHHHHHHHHHHcC--CEEEEEecCCCCCHHHHHHHH
Confidence 8765432 2345555555554 3455 6899999999887643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.1e-09 Score=82.07 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=60.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.+.|++|..+........ ...++.+++|+|......... .... +.....+. ..|.++|.||+|+
T Consensus 54 ~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~-~~~~--~~~~~~~~~~~~~p~ilvgnK~Dl 122 (171)
T d2erya1 54 RLDILDTAGQEEFGAMREQY--------MRTGEGFLLVFSVTDRGSFEE-IYKF--QRQILRVKDRDEFPMILIGNKADL 122 (171)
T ss_dssp EEEEEECC----CCHHHHHH--------HHHCSEEEEEEETTCHHHHHT-HHHH--HHHHHHHHTSSCCSEEEEEECTTC
T ss_pred cccccccccccccccccccc--------ccccceEEEeeccccccchhh-HHHH--hHHHHhhcccCCCCEEEEEeccch
Confidence 46689999977654443322 124689999999886543211 1100 11122222 2355778899998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..++..++.++.+ ++.+ .|++++.|+++++..+
T Consensus 123 ~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~i~e~f~~l 162 (171)
T d2erya1 123 DHQRQV--TQEEGQQLARQLK--VTYMEASAKIRMNVDQAFHEL 162 (171)
T ss_dssp TTSCSS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred hhhccc--hHHHHHHHHHHcC--CEEEEEcCCCCcCHHHHHHHH
Confidence 765432 2345566665544 3555 6999999999887654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.1e-09 Score=85.04 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=58.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.+.||+|........ .......+.+++|+|............ +...+.+.. .|.++|.||+|
T Consensus 53 ~~~~i~d~~g~e~~~~~~--------~~~~~~~~~~i~v~d~~~~~S~~~~~~----~~~~i~~~~~~~~piilvgnK~D 120 (175)
T d2f9la1 53 IKAQIWDTAGQERYRRIT--------SAYYRGAVGALLVYDIAKHLTYENVER----WLKELRDHADSNIVIMLVGNKSD 120 (175)
T ss_dssp EEEEEEECSSGGGTTCCC--------HHHHTTCSEEEEEEETTCHHHHHTHHH----HHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEecccCCcHHHHHHH--------HHHhhccCeEEEEEECCCcccchhHHH----HHHHHHHhcCCCCcEEEEEeeec
Confidence 346689999953221111 011234678999999986543222110 112222222 35677789999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+.... .........+..+ .+++ .|++++.|+++++...
T Consensus 121 l~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~g~~i~e~f~~l 161 (175)
T d2f9la1 121 LRHLRAV--PTDEARAFAEKNN--LSFIETSALDSTNVEEAFKNI 161 (175)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccc--hHHHHHHhhcccC--ceEEEEecCCCcCHHHHHHHH
Confidence 9865432 1233333333332 4555 7999999999887554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.90 E-value=6.1e-09 Score=86.84 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=80.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcc-cccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEE-IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
++--++|+|-.|+|||||+.+|+-. ..-.+.+-+. .|++ .+.+..-... -..+...+..+
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~--~~~~~~D~~~~E~~r---------~~si~~~~~~~------- 66 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EGAATMDFMEQERER---------GITITAAVTTC------- 66 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------C---------CCCCCCSEEEE-------
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCcccccccee--cCceEEeccHHHHhc---------CCccccceeee-------
Confidence 4556899999999999999999742 1111111111 1110 0000000000 11112222222
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
.+.+..+-|+||||..+...-. .....-+|.+|+||||..+....... +-......+.|
T Consensus 67 --------~~~~~~~n~iDtPG~~dF~~e~--------~~~l~~~D~avlVvda~~Gv~~~T~~-----~w~~a~~~~lP 125 (276)
T d2bv3a2 67 --------FWKDHRINIIDAPGHVDFTIEV--------ERSMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKVP 125 (276)
T ss_dssp --------EETTEEEEEECCCSSSSCSTTH--------HHHHHHCCEEEEEEETTTSSCHHHHH-----HHHHHHTTTCC
T ss_pred --------ccCCeEEEEecCCchhhhHHHH--------HHHHHhhhheEEeccccCCcchhHHH-----HHHHHHHcCCC
Confidence 1446778999999977653222 12233479999999999877654432 23344556779
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
-++++||+|....+ ..++...+++.
T Consensus 126 ~i~fINKmDr~~ad-----~~~~l~ei~~~ 150 (276)
T d2bv3a2 126 RIAFANKMDKTGAD-----LWLVIRTMQER 150 (276)
T ss_dssp EEEEEECTTSTTCC-----HHHHHHHHHHT
T ss_pred EEEEEecccccccc-----cchhHHHHHHH
Confidence 99999999988764 34455555553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.7e-10 Score=88.02 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.+.||+|..........+ ...++.+++|+|.......... .....++ ..+.++|.
T Consensus 64 ~~~~i~dt~G~e~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~~~~~~iilv~ 128 (186)
T d2f7sa1 64 VHLQLWDTAGQERFRSLTTAF--------FRDAMGFLLMFDLTSQQSFLNV-------RNWMSQLQANAYCENPDIVLIG 128 (186)
T ss_dssp EEEEEEEEESHHHHHHHHHHH--------HTTCCEEEEEEETTCHHHHHHH-------HHHHHTCCCCCTTTCCEEEEEE
T ss_pred EEeccccCCcchhhHHHHHHH--------HhcCCEEEEEEeccccccceee-------eeccchhhhhccCCCceEEEEe
Confidence 456789999965433333221 1247899999998865432111 1111111 12456788
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+....+. ..++..++.++.+ ++++ .|++++.|+++++...
T Consensus 129 nK~Dl~~~~~v--~~~e~~~~~~~~~--~~~~e~Sak~~~~i~e~f~~l 173 (186)
T d2f7sa1 129 NKADLPDQREV--NERQARELADKYG--IPYFETSAATGQNVEKAVETL 173 (186)
T ss_dssp ECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEBTTTTBTHHHHHHHH
T ss_pred eeccchhhhcc--hHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 99999765443 2344556565543 3455 8999999999888654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.4e-09 Score=82.91 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ....+.+++|+|........... . +...+.+. ..|.++|.||+|
T Consensus 54 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~piivv~nK~D 121 (174)
T d2bmea1 54 VKLQIWDTAGQERFRSVTRSY--------YRGAAGALLVYDITSRETYNALT-N---WLTDARMLASQNIVIILCGNKKD 121 (174)
T ss_dssp EEEEEEEECCSGGGHHHHHTT--------STTCSEEEEEEETTCHHHHHTHH-H---HHHHHHHHSCTTCEEEEEEECGG
T ss_pred eeEEEEECCCchhhhhhHHHH--------hhhCCEEEEEEecccchhHHHHh-h---hhcccccccCCceEEEEEEeccc
Confidence 346789999976655544322 23478999999998654332110 0 11111111 346788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. .........+.. ..+++ .|++++.|+++++..+
T Consensus 122 ~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sak~~~gi~e~f~~l 162 (174)
T d2bmea1 122 LDADREV--TFLEASRFAQEN--ELMFLETSALTGENVEEAFVQC 162 (174)
T ss_dssp GGGGCCS--CHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred ccchhch--hhhHHHHHHHhC--CCEEEEeeCCCCcCHHHHHHHH
Confidence 8765442 223333433333 24555 7889999999887543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5e-09 Score=80.56 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.+.|++|..+...+... .....+.+++|+|........... . +..... ....+.++|.||+|
T Consensus 52 ~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~Sf~~~~-~---~~~~~~~~~~~~~~~ilvgnK~D 119 (167)
T d1z08a1 52 VNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDITDEDSFQKVK-N---WVKELRKMLGNEICLCIVGNKID 119 (167)
T ss_dssp EEEEEEECCCC-------CC--------SSTTCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHHGGGSEEEEEEECGG
T ss_pred ceeeeeccCCcceecccchh--------hccCCceeEEEEeCCchhHHHhhh-h---hhhhcccccccccceeeeccccc
Confidence 45678999997655444321 123468999999998654321110 0 111111 12334566789999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++..++.++.+ ++.+ .|++++.|+++++..+
T Consensus 120 l~~~~~v--~~~e~~~~a~~~~--~~~~e~Sak~~~~v~e~F~~l 160 (167)
T d1z08a1 120 LEKERHV--SIQEAESYAESVG--AKHYHTSAKQNKGIEELFLDL 160 (167)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccc--chHHHHHHHHHcC--CeEEEEecCCCcCHHHHHHHH
Confidence 8875442 2355566666543 4555 7899999999887643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=6.1e-10 Score=85.81 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.+.|++|........... ...++.+++++|............ +...+.+. ..|.++|.||+
T Consensus 51 ~~l~~~d~~g~~~~~~~~~~~--------~~~a~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piilvgnK~ 118 (167)
T d1kaoa_ 51 SVLEILDTAGTEQFASMRDLY--------IKNGQGFILVYSLVNQQSFQDIKP----MRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHHH----HHHHHHHHTTTSCCCEEEEEECG
T ss_pred EeeccccCCCccccccchHHH--------hhcccceeeeeeecchhhhhhhhc----hhhhhhhhccCCCCCEEEEEEcc
Confidence 346689999977655444322 124588999999986544322110 11111221 23567889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+...... ..++.....+..+ ++.+ +|++++.|+++++..+
T Consensus 119 Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~g~~i~e~f~~i 160 (167)
T d1kaoa_ 119 DLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHHHHHH
T ss_pred chhhcccc--hHHHHHHHHHHcC--CeEEEECCCCCcCHHHHHHHH
Confidence 98765442 2344444444443 3455 7999999999887643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.7e-08 Score=77.36 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=61.8
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+.+.|++|........... ....+.+++|+|......... .. .+...+.+. ..|.++|.||+|
T Consensus 52 ~l~~~d~~~~~~~~~~~~~~--------~~~~~~~iiv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~piilv~nK~D 119 (166)
T d1ctqa_ 52 LLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFED-IH---QYREQIKRVKDSDDVPMVLVGNKCD 119 (166)
T ss_dssp EEEEEEECCCGGGHHHHHHH--------HHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTCSSCCEEEEEECTT
T ss_pred eeeeeeccCccccccchhhh--------hhcccccceeecccccccHHH-HH---HHHHHHHHhcCCCCCeEEEEecccc
Confidence 35678999977654443322 124578999999986544311 10 012222222 136788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... .+....+.+..+ .+.+ .|++++.|+++++..+
T Consensus 120 l~~~~~~---~~~~~~~~~~~~--~~~~e~Sak~g~gi~e~f~~i 159 (166)
T d1ctqa_ 120 LAARTVE---SRQAQDLARSYG--IPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp CSCCCSC---HHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHH
T ss_pred ccccccc---HHHHHHHHHHhC--CeEEEEcCCCCcCHHHHHHHH
Confidence 8754432 344555555543 3455 7999999999988654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.8e-09 Score=82.57 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=59.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.|++|.......... .....+.+++|+|........... . +...+.+. ..|.++|.||+|
T Consensus 52 ~~~~i~d~~g~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~-~---~~~~~~~~~~~~~piilv~nK~D 119 (173)
T d2a5ja1 52 IKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHLT-S---WLEDARQHSSSNMVIMLIGNKSD 119 (173)
T ss_dssp EEEEEECCTTGGGTSCCCHH--------HHTTCSEEEEEEETTCHHHHHTHH-H---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEeecccCccchhhHHHH--------HhhccCEEEEEEeecChHHHHhHH-H---HHHHHHHhCCCCCeEEEEecCCc
Confidence 45678899995433221111 122468899999987654432110 0 11111222 235677889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... ..+......+..+ ++.+ +|++++.|+++++..+
T Consensus 120 ~~~~~~~--~~~~~~~~a~~~~--~~~~e~Sa~tg~~V~e~f~~i 160 (173)
T d2a5ja1 120 LESRRDV--KREEGEAFAREHG--LIFMETSAKTACNVEEAFINT 160 (173)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHH
T ss_pred hhhhhhh--HHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHH
Confidence 8654432 2344444444433 4555 7999999999887544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5e-09 Score=81.14 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++|++|......+... . .....+.+++|+|........... . +...+.+. ..|.++|.||+
T Consensus 53 ~~~~~~d~~~~~g~e~~~~~----~---~~~~~~~~ilvfd~t~~~s~~~~~-~---~~~~i~~~~~~~~~piilvgnK~ 121 (172)
T d2g3ya1 53 ATIILLDMWENKGENEWLHD----H---CMQVGDAYLIVYSITDRASFEKAS-E---LRIQLRRARQTEDIPIILVGNKS 121 (172)
T ss_dssp EEEEEECCTTTTHHHHHHHH----C---CCCCCSEEEEEEETTCHHHHHHHH-H---HHHHHHTSGGGTTSCEEEEEECT
T ss_pred eeeeeecccccccccccccc----c---cccccceeeeeecccccchhhhhh-h---hhhhhhhccccCCceEEEEeccc
Confidence 44678888875433333211 1 134568999999987654432210 0 11111111 24568889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+. ..++.++..+..+ ++.+ +|++.+.|+++++..+
T Consensus 122 Dl~~~~~v--~~~~~~~~a~~~~--~~~~e~Sak~g~~i~~~f~~l 163 (172)
T d2g3ya1 122 DLVRCREV--SVSEGRACAVVFD--CKFIETSAAVQHNVKELFEGI 163 (172)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccc--cHHHHHHHHHHcC--CeEEEEeCCCCcCHHHHHHHH
Confidence 98765443 2344444444433 4556 7899999999987654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.6e-08 Score=77.55 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=60.6
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D~ 198 (257)
.+.+.||+|......+.... ....+.+++++|......... ... +.....+ -..+.++|.||+|+
T Consensus 54 ~~~i~d~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~iilvgnK~Dl 121 (167)
T d1z0ja1 54 KFLIWDTAGLERFRALAPMY--------YRGSAAAIIVYDITKEETFST-LKN---WVRELRQHGPPSIVVAIAGNKCDL 121 (167)
T ss_dssp EEEEEEECCSGGGGGGTHHH--------HTTCSEEEEEEETTCHHHHHH-HHH---HHHHHHHHSCTTSEEEEEEECTTC
T ss_pred ceeeeecCCchhhhHHHHHH--------HhhccceEEEeeechhhhhhh-HHH---hhhhhhhccCCcceEEEecccchh
Confidence 35688999976544333211 224688999999875443211 100 1111111 23356788899999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... ..++..+..++.+ ++.+ .|++++.|+++++..+
T Consensus 122 ~~~~~v--~~~~~~~~~~~~~--~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 122 TDVREV--MERDAKDYADSIH--AIFVETSAKNAININELFIEI 161 (167)
T ss_dssp GGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred ccccch--hHHHHHHHHHHcC--CEEEEEecCCCCCHHHHHHHH
Confidence 754332 2344555555443 4555 6899999999987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.4e-09 Score=83.76 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH-HHHHHh---hcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQIA---FADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~ql~---~~~vivlNK~ 196 (257)
..+.+.|++|........... ...++.+++++|..+...... ... +.. ...... .|.++|.||+
T Consensus 51 ~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~sf~~-~~~---~~~~~~~~~~~~~~p~ilvgnK~ 118 (167)
T d1c1ya_ 51 CMLEILDTAGTEQFTAMRDLY--------MKNGQGFALVYSITAQSTFND-LQD---LREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHH--------HHHCSEEEEEEETTCHHHHHT-HHH---HHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEeccccccCccccccccccc--------ccccceeEEeeeccchhhhHh-HHH---HHHHHHHhcCCCCCeEEEEEEec
Confidence 346688999976654443221 224689999999986543211 100 111 112221 2458889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+...... ..+......++ ....+.+ .|++++.|+++++..+
T Consensus 119 Dl~~~~~~--~~~~~~~~~~~-~~~~~~~e~Sak~g~gv~e~F~~l 161 (167)
T d1c1ya_ 119 DLEDERVV--GKEQGQNLARQ-WCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp TCGGGCCS--CHHHHHHHHHH-TTSCEEEECBTTTTBSHHHHHHHH
T ss_pred Cccccccc--chhHHHHHHHH-hCCCEEEEEcCCCCcCHHHHHHHH
Confidence 99765442 22334444444 3445666 6999999999987643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6.6e-10 Score=86.09 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D 197 (257)
...+.+.||+|......... . -...++.+++|+|..+..+. ..... +.....+. ..|.++|.||+|
T Consensus 51 ~~~l~i~D~~g~~~~~~~~~-----~---~~~~~~~~ilv~d~~~~~Sf-~~~~~---~~~~~~~~~~~~piilvgnK~D 118 (170)
T d1i2ma_ 51 PIKFNVWDTAGQEKFGGLRD-----G---YYIQAQCAIIMFDVTSRVTY-KNVPN---WHRDLVRVCENIPIVLCGNKVD 118 (170)
T ss_dssp CEEEEEEECTTHHHHSSCGG-----G---GTTTCCEEEEEEETTSGGGG-TTHHH---HHHHHHHHHCSCCEEEEEECCC
T ss_pred cccccccccccccccceecc-----h---hcccccchhhcccccccccc-chhHH---HHHHHhhccCCCceeeecchhh
Confidence 34577899999432211111 1 12357899999999874331 11100 11111121 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.......+ .....+ ....+.+ +|++++.|+++++..+.
T Consensus 119 l~~~~~~~~----~~~~~~--~~~~~~~e~Sak~~~~v~e~f~~l~ 158 (170)
T d1i2ma_ 119 IKDRKVKAK----SIVFHR--KKNLQYYDISAKSNYNFEKPFLWLA 158 (170)
T ss_dssp CSCSCCTTT----SHHHHS--SCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred hhhhhhhhH----HHHHHH--HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 976543211 122222 2344556 79999999998887654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.2e-09 Score=82.32 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-H---hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I---AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l---~~~~vivlNK~ 196 (257)
..+.+.||+|..........+ ....+.+++|+|......... ... +...+.+ . ..|.++|.||+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~i~~~~~~~~~p~ilvgnK~ 121 (173)
T d2fn4a1 54 ARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNE-VGK---LFTQILRVKDRDDFPVVLVGNKA 121 (173)
T ss_dssp EEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHH-HHH---HHHHHHHHHTSSCCCEEEEEECG
T ss_pred eeeeccccccccccccccchh--------hccceeeeeecccccccccch-hhh---hhHHHHHHhccCCCceEEEEEee
Confidence 446689999976543322211 124689999999986544321 110 1111222 1 23567888999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+. ..+....+.++.+ .+.+ .|++++.|+++++..+
T Consensus 122 Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sak~g~gv~e~f~~l 163 (173)
T d2fn4a1 122 DLESQRQV--PRSEASAFGASHH--VAYFEASAKLRLNVDEAFEQL 163 (173)
T ss_dssp GGGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred chhhcccc--chhhhhHHHHhcC--CEEEEEeCCCCcCHHHHHHHH
Confidence 98765332 2344455444432 4555 7999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.6e-09 Score=83.32 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.+.||||......... .....++.+++|+|......... ... +..... ....+.+++.||.|
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~~i~~~~k~d 118 (166)
T d1g16a_ 51 VKLQIWDTAGQERFRTITT--------AYYRGAMGIILVYDITDERTFTN-IKQ---WFKTVNEHANDEAQLLLVGNKSD 118 (166)
T ss_dssp EEEEEECCTTGGGTSCCCH--------HHHTTEEEEEEEEETTCHHHHHT-HHH---HHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhHHHHH--------HHHhcCCEEEEEEECCCccCHHH-HHh---hhhhhhccccCcceeeeecchhh
Confidence 3466899999543221111 11235789999999997654221 100 111111 12235577889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+.... .+...+..+..+ .+++ .|++++.|+++++..+
T Consensus 119 ~~~~~~~---~~~~~~~~~~~~--~~~~~~Sa~~~~~v~e~f~~l 158 (166)
T d1g16a_ 119 METRVVT---ADQGEALAKELG--IPFIESSAKNDDNVNEIFFTL 158 (166)
T ss_dssp CTTCCSC---HHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHHH
T ss_pred hhhhhhh---HHHHHHHHHhcC--CeEEEECCCCCCCHHHHHHHH
Confidence 8765442 445555554443 3455 7899999999887644
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=8.4e-09 Score=79.49 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=59.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--HhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l~~~~vivlNK~D~ 198 (257)
..+-|.||+|......+.... ....+.+++|+|............ . +...... ...+.++|.||+|.
T Consensus 56 ~~l~i~Dt~G~e~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~iilv~~k~d~ 124 (170)
T d2g6ba1 56 VKLQMWDTAGQERFRSVTHAY--------YRDAHALLLLYDVTNKASFDNIQA-W--LTEIHEYAQHDVALMLLGNKVDS 124 (170)
T ss_dssp EEEEEEECCCC--------CC--------GGGCSEEEEEEETTCHHHHHTHHH-H--HHHHHHHSCTTCEEEEEEECCST
T ss_pred EEEEEEECCCchhhHHHHHHh--------hcCCceeEEEecCCcccchhhhhh-h--hhhhhhccCCCceEEEEEeeech
Confidence 346689999975443332211 234688999999986554322110 0 1111111 12356778899998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..++.....+..+ ++++ .|++++.|+++++..+
T Consensus 125 ~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~gi~e~f~~l 164 (170)
T d2g6ba1 125 AHERVV--KREDGEKLAKEYG--LPFMETSAKTGLNVDLAFTAI 164 (170)
T ss_dssp TSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHH
T ss_pred hhcccc--cHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHH
Confidence 876543 2344555555544 3555 7899999999887654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.4e-09 Score=82.42 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-+.||+|.......... .....+.+++|+|+........... .+.....+. ..+.++|.||+|+
T Consensus 57 ~~l~i~D~~g~e~~~~~~~~--------~~~~a~~~ilv~d~t~~~Sf~~~~~---~~~~~~~~~~~~~~~ilvgnK~Dl 125 (185)
T d2atxa1 57 YLLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPFLLIGTQIDL 125 (185)
T ss_dssp EEEEEECCCCSSSSTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEeecccccccchhhhhhhh--------cccccceeeeccccchHHHHHHHHH---HHHHHHHhcCCCCCeeEeeecccc
Confidence 34668999997543332211 1234689999999987554211110 022223332 2356788899998
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+... +.-..++..++.++.+. ...+ .|++++.|+++++...
T Consensus 126 ~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~-~~~~E~SAk~~~gv~e~F~~l 178 (185)
T d2atxa1 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-CCYVECSALTQKGLKTVFDEA 178 (185)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-SCEEECCTTTCTTHHHHHHHH
T ss_pred ccchhhhhhhhhcccccccHHHHHHHHHHcCC-CEEEEecCCCCcCHHHHHHHH
Confidence 75321 11123444454455543 3445 6899999999887643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.78 E-value=7.9e-09 Score=85.83 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=53.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+-||||||..+...-.. .....+|.+|+|+||..+....... ......+.+.|.++++||+|.
T Consensus 65 ~~~~~n~iDtPGh~dF~~e~~--------~al~~~D~avlvvda~~Gv~~~t~~-----~~~~~~~~~~p~~i~iNk~D~ 131 (267)
T d2dy1a2 65 RGHRVFLLDAPGYGDFVGEIR--------GALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDK 131 (267)
T ss_dssp TTEEEEEEECCCSGGGHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGG
T ss_pred cccceeEEccCchhhhhhhhh--------hhhcccCceEEEeeccCCccchhHH-----HHHhhhhcccccccccccccc
Confidence 456688999999887644332 2234579999999999776654432 334556677899999999997
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
. . .....+.++++.+
T Consensus 132 ~-~-~~~~~l~~~~~~l 146 (267)
T d2dy1a2 132 G-G-DYYALLEDLRSTL 146 (267)
T ss_dssp C-C-CHHHHHHHHHHHH
T ss_pred c-c-cchhhhhhHHHHh
Confidence 4 3 2223344444444
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.1e-08 Score=78.70 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ....+.+++++|............ +...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~iilvgnK~D 122 (170)
T d1r2qa_ 55 VKFEIWDTAGQERYHSLAPMY--------YRGAQAAIVVYDITNEESFARAKN----WVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHH--------HTTCSEEEEEEETTCHHHHHHHHH----HHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEeccCCCchhhhhhHHHH--------hhCcceEEEEeccchhhHHHHHHH----HhhhhhhccCCCceEEeeccccc
Confidence 457789999976543333221 124678999999887654322110 11111121 234577889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..+.+. ..+......+.. ..+.+ .|++++.++++++..+.
T Consensus 123 l~~~~~v--~~e~~~~~~~~~--~~~~~e~SAk~g~~V~e~f~~l~ 164 (170)
T d1r2qa_ 123 LANKRAV--DFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccc--cHHHHHHHHHhc--CCEEEEeeCCCCCCHHHHHHHHH
Confidence 8765443 234444444443 24565 78999999999887654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.2e-08 Score=78.50 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=59.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---H-hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---I-AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l-~~~~vivlNK~ 196 (257)
..+.+.||+|......... . ...++.+++|+|............ +.....+ . ..|.++|.||+
T Consensus 50 ~~l~i~D~~g~~~~~~~~~-~--------~~~~~~~ilv~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piilvgnK~ 116 (168)
T d2atva1 50 VSMEILDTAGQEDTIQREG-H--------MRWGEGFVLVYDITDRGSFEEVLP----LKNILDEIKKPKNVTLILVGNKA 116 (168)
T ss_dssp EEEEEEECCCCCCCHHHHH-H--------HHHCSEEEEEEETTCHHHHHTHHH----HHHHHHHHHTTSCCCEEEEEECG
T ss_pred eEEEEeecccccccccchh-h--------hcccccceeecccCCccchhhhhh----hcccccccccccCcceeeeccch
Confidence 3467899999765432211 1 124688999999987544322100 1111111 1 24678889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNC 240 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~ 240 (257)
|+....+. ..++..++.++.+ .+.+ .|++++. ++++++..
T Consensus 117 Dl~~~r~V--~~~e~~~~a~~~~--~~~~e~Saktg~gnV~e~F~~ 158 (168)
T d2atva1 117 DLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNITEIFYE 158 (168)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCHHHHHHH
T ss_pred hhhhhccC--cHHHHHHHHHHhC--CeEEEEccccCCcCHHHHHHH
Confidence 98754332 2345555555554 4566 5788776 58887654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=1.2e-08 Score=77.93 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=57.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.|++|......... ... ...++.+++|+|......... .... +....... ..|.++|.||+|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~----~~~---~~~~d~~ilv~d~~~~~s~~~-~~~~--~~~i~~~~~~~~~pi~lvgnK~D 120 (165)
T d1z06a1 51 IKIQLWDTAGQERFRKSMV----QHY---YRNVHAVVFVYDMTNMASFHS-LPAW--IEECKQHLLANDIPRILVGNKCD 120 (165)
T ss_dssp EEEEEEECCCSHHHHTTTH----HHH---HTTCCEEEEEEETTCHHHHHT-HHHH--HHHHHHHCCCSCCCEEEEEECTT
T ss_pred eEEEEEeccCchhhccccc----eee---ecCCCceEEEEEeehhhhhhh-hhhh--hHHHHhhccCCCCeEEEEecccc
Confidence 4567888888542211110 001 234789999999986544321 1000 11111221 235678899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecC---CcChhhhhcC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRC---QVDLSEVLNC 240 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~---~~~~~~l~~~ 240 (257)
+..+.+. ..++..++.++.+ ++.+ .|+++ +.++++++..
T Consensus 121 l~~~~~v--~~~~~~~~~~~~~--~~~~e~SAkt~~~~~~V~e~F~~ 163 (165)
T d1z06a1 121 LRSAIQV--PTDLAQKFADTHS--MPLFETSAKNPNDNDHVEAIFMT 163 (165)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CCEEECCSSSGGGGSCHHHHHHH
T ss_pred chhccch--hHHHHHHHHHHCC--CEEEEEecccCCcCcCHHHHHHH
Confidence 8765432 2345556655544 3555 57765 3477777643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=1.2e-08 Score=78.83 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+-+.||||......... . .....+.+++|+|......... ... +...+.+ -..+.++|.||.|
T Consensus 55 ~~l~i~D~~G~e~~~~~~~-----~---~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~iilv~~k~D 122 (173)
T d2fu5c1 55 IKLQIWDTAGQERFRTITT-----A---YYRGAMGIMLVYDITNEKSFDN-IRN---WIRNIEEHASADVEKMILGNKCD 122 (173)
T ss_dssp EEEEEEEC---------CC-----T---TTTTCSEEEEEEETTCHHHHHH-HHH---HHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEECCCchhhHHHHH-----H---hccCCCEEEEEEECCChhhHHH-HHH---HHHHhhhhccCCceEEEEEeccc
Confidence 3466899999543332211 1 1235789999999986543211 100 1111111 1245678889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....... ...+.....+.. .++.+ .|++++.|+++++..+
T Consensus 123 ~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~g~gv~e~f~~l 163 (173)
T d2fu5c1 123 VNDKRQV--SKERGEKLALDY--GIKFMETSAKANINVENAFFTL 163 (173)
T ss_dssp CCSCCCS--CHHHHHHHHHHH--TCEEEECCC---CCHHHHHHHH
T ss_pred chhhccc--HHHHHHHHHHhc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 8875442 223344444443 35555 7899999999887654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=3.1e-09 Score=82.06 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+-+.|++|........... ...++.+++|+|......... .... +....++. ..|.+++.||+|
T Consensus 52 ~~~~i~d~~g~~~~~~~~~~~--------~~~~~~~llv~d~~d~~Sf~~-~~~~--~~~i~~~~~~~~~p~ilvgnK~D 120 (169)
T d1x1ra1 52 AILDVLDTAGQEEFSAMREQY--------MRTGDGFLIVYSVTDKASFEH-VDRF--HQLILRVKDRESFPMILVANKVD 120 (169)
T ss_dssp EEEEEEECCSCGGGCSSHHHH--------HHHCSEEEEEEETTCHHHHHT-HHHH--HHHHHHHHTSSCCCEEEEEECTT
T ss_pred ccccccccccccccccchhhh--------hhhccEEEEecccccchhhhc-cchh--hHHHHhhccccCccEEEEecccc
Confidence 345689999965432222111 224689999999986544221 1000 11122222 234578899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC-cChhhhhcC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ-VDLSEVLNC 240 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~-~~~~~l~~~ 240 (257)
+....+. ..++..++.++.+ ++.+ .|++++ .|+++++..
T Consensus 121 l~~~~~v--~~e~~~~~~~~~~--~~~~e~Sak~~~~nV~~~F~~ 161 (169)
T d1x1ra1 121 LMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLNVDKTFHD 161 (169)
T ss_dssp CSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHH
T ss_pred hhhhcee--ehhhHHHHHHHcC--CEEEEEcCCCCCcCHHHHHHH
Confidence 9876543 2355566666665 3455 677765 599887654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=98.75 E-value=6.6e-10 Score=84.77 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=57.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH--HH-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--QI-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--ql-~~~~vivlNK~ 196 (257)
+..+.+.+++|......... ......+.+++++|............. ...... +. ..+.+++.||.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iv~nk~ 116 (169)
T d1upta_ 48 NLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKSE---LVAMLEEEELRKAILVVFANKQ 116 (169)
T ss_dssp TEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHHH---HHHHHTCGGGTTCEEEEEEECT
T ss_pred ceEEEEeeccccccccccch--------hhhhhhhhhhhhhhhhhcchhhhccch---hhhhhhhhccccceEEEEEeec
Confidence 34566888888654433221 112334677777776543222111100 011111 11 23457788999
Q ss_pred CCCCcCCCcchHHHHHHHHHH---hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE---INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~---~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... ..++...+.. .....+++ .|++++.|+++++..+
T Consensus 117 Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 117 DMEQAMT----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp TSTTCCC----HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccc----HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 9987654 2344443322 22345666 6999999999988654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.8e-08 Score=77.18 Aligned_cols=102 Identities=7% Similarity=0.021 Sum_probs=57.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh------hcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~------~~~vivlN 194 (257)
..+.+.||+|..... +. ..++.+++|+|..+..+... .. .+...+..++ .|.++|.|
T Consensus 52 ~~l~i~Dt~g~~~~~-~~------------~~ad~~ilVfd~~~~~Sf~~-~~---~~~~~i~~~~~~~~~~~pi~lV~~ 114 (175)
T d2bmja1 52 HLVLIREEAGAPDAK-FS------------GWADAVIFVFSLEDENSFQA-VS---RLHGQLSSLRGEGRGGLALALVGT 114 (175)
T ss_dssp EEEEEEECSSCCCHH-HH------------HHCSEEEEEEETTCHHHHHH-HH---HHHHHHHHHCC--CCCCEEEEEEE
T ss_pred EEEEEeecccccccc-cc------------cccceeEEEeecccchhhhh-hH---HHHHHHHHHhhcccCCccEEEEee
Confidence 346688999976432 11 12589999999986543211 10 0111222221 24577888
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
|.|+....+..-.-++...+.++. .....+ .|++.+.|+++++..
T Consensus 115 k~d~d~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~~~F~~ 160 (175)
T d2bmja1 115 QDRISASSPRVVGDARARALCADM-KRCSYYETCATYGLNVDRVFQE 160 (175)
T ss_dssp CTTCCSSSCCCSCHHHHHHHHHTS-TTEEEEEEBTTTTBTHHHHHHH
T ss_pred ecCcchhhhcchhHHHHHHHHHHh-CCCeEEEeCCCCCcCHHHHHHH
Confidence 888754433212233444444443 334555 699999999987654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.72 E-value=1.1e-08 Score=85.55 Aligned_cols=102 Identities=24% Similarity=0.200 Sum_probs=62.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|+||+|||||+|+|... ++. +.+-|.+++... -|- +..++.-...+.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~----~~~-~~~ypf~ti~pn--------------------~gv--v~v~d~r~~~l~~ 56 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA----GIE-AANYPFCTIEPN--------------------TGV--VPMPDPRLDALAE 56 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCC--------------------SSE--EECCCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHCC----CCc-cccCCCCCCCCc--------------------eEE--EecccHhHHHHHH
Confidence 4799999999999999999954 222 233333212111 111 1122233444444
Q ss_pred HHHhc--CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 114 LVQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 114 ~~~~~--~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
+..-+ -...+-|+|.||+.......+.+. .+.+.+..++|.+++|||+.
T Consensus 57 ~~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg-~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECS
T ss_pred hcCCCceeeeeEEEEEccccCCCcccCCCcc-HHHHHHHHhccceEEEeecc
Confidence 44211 123466899999998877666554 45678889999999999873
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.9e-08 Score=76.07 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-+.|++|.......... .....+.+++|+|.....+...... .+.....+. ..|.++|.||+|+
T Consensus 50 ~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~Sf~~~~~---~~~~~~~~~~~~~piilvgnK~Dl 118 (177)
T d1kmqa_ 50 VELALWDTAGLEDYDRLRPL--------SYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 118 (177)
T ss_dssp EEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECGGG
T ss_pred eeeeccccCccchhcccchh--------hcccchhhhhhcccchhHHHHHHHH---HHHHHHHHhCCCCceEEeeecccc
Confidence 34678999996533222211 1235689999999986543211100 022223332 2466778899999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... .-..++...+.++.+ ..+.+ .|++++.|+++++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~-~~~~~E~SAkt~~gi~e~F~~i 171 (177)
T d1kmqa_ 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIG-AFGYMECSAKTKDGVREVFEMA 171 (177)
T ss_dssp TTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred cchhhHHHHHHHhhcccccHHHHHHHHHHcC-CcEEEEecCCCCcCHHHHHHHH
Confidence 764210 011233444444433 23455 6899999999987653
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.70 E-value=1.4e-08 Score=83.40 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhc--cCCChhHHHHHHhhcCE-EEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR--HLSSYPEAIHQIAFADV-VILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~--~~~~~~~~~~ql~~~~v-ivlNK 195 (257)
.+..+.|+||||-.....- .......+|.+++|||+..+........ +-.........++.+.+ +++||
T Consensus 100 ~~~~i~~iDtPGH~df~~~--------~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNK 171 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTN--------MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINK 171 (245)
T ss_dssp SSEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEEC
T ss_pred ccceeeeecccccccchhh--------hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 3567899999997543221 2234556899999999987654322110 00001122344445544 78899
Q ss_pred CCCCCcCCCc----chHHHHHHHHHHhC---CC--CEEE-EeecCCcChhhhhcCcc
Q 025133 196 VDLVSPERSG----DSLDELEKEIHEIN---SL--AHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 196 ~D~~~~~~~~----~~l~~~~~~l~~~~---~~--a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+.+.+... +.++++...++++. +. .+++ +|++.+.|+.++++...
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~~ 228 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSV 228 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTT
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhccC
Confidence 9998654321 22344444444442 22 2344 79999999998887754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=4.2e-08 Score=75.35 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH--HHhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--QIAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--ql~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+.... ....+.+++|+|........... .. +..... .-..+.+++.||+|+
T Consensus 52 ~~l~i~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~~~~v~nk~d~ 120 (170)
T d1ek0a_ 52 VKFEIWDTAGQERFASLAPMY--------YRNAQAALVVYDVTKPQSFIKAR-HW--VKELHEQASKDIIIALVGNKIDM 120 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHH--------HTTCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHSCTTCEEEEEEECGGG
T ss_pred ccccccccCCchhHHHHHHHH--------HhccceEEEEEeCCcccchhhhh-hh--hhhhccccccccceeeeeccccc
Confidence 457799999976554433221 23468999999998754322110 00 111111 112356788899998
Q ss_pred CCcCCCc-chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG-DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~-~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....... -..++..++.++.+ ++.+ .|++++.|+++++..+
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~~~--~~~~e~Sak~g~gV~e~F~~i 163 (170)
T d1ek0a_ 121 LQEGGERKVAREEGEKLAEEKG--LLFFETSAKTGENVNDVFLGI 163 (170)
T ss_dssp GGSSCCCCSCHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHcC--CEEEEecCCCCcCHHHHHHHH
Confidence 6543211 12344555555543 3555 6889999999988654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.67 E-value=2.2e-08 Score=77.16 Aligned_cols=150 Identities=14% Similarity=0.150 Sum_probs=75.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|||||||+++|... .+.......+. ....+ .
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~----~~~~~~~~~~~----~~~~~-------------~------------------ 53 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDD----RLGQHVPTLHP----TSEEL-------------T------------------ 53 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC----------CCCCC----SCEEE-------------E------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC----CCcceeccccc----ceeEE-------------E------------------
Confidence 345889999999999999999842 22211111111 10000 0
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH--HH-Hhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQ-IAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~q-l~~~ 188 (257)
..+....+.++.|......... ......+.+++++|............. +.... .. ...+
T Consensus 54 ------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~d~~~~~~~~~~---~~~~~~~~~~~~~~ 116 (186)
T d1f6ba_ 54 ------IAGMTFTTFDLGGHIQARRVWK--------NYLPAINGIVFLVDCADHERLLESKEE---LDSLMTDETIANVP 116 (186)
T ss_dssp ------ETTEEEEEEEECC----CCGGG--------GGGGGCSEEEEEEETTCGGGHHHHHHH---HHHHHTCGGGTTSC
T ss_pred ------ecccccccccccchhhhhhHHh--------hhhcccceeeeeeeccCccchHHHHHH---HHHhhcccccCCCc
Confidence 1123355667776443222111 122345678888887653322111100 00111 11 2357
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---------------CCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---------------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---------------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+++.||.|+..... ...+...+.... ....++ .|++++.|++++++..
T Consensus 117 ~li~~~K~D~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l 181 (186)
T d1f6ba_ 117 ILILGNKIDRPEAIS----EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181 (186)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred eEEEEeccCccccCC----HHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 788999999876543 344544443211 112354 6999999999987643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.8e-09 Score=83.34 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=59.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+-+.|++|.......... .....+.+++|+|............ .+.....+. ..|.++|.||+|+.
T Consensus 54 ~~~~~d~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~sf~~i~~---~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 54 NLGLWDTAGQEDYDRLRPL--------SYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp EEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEeecccccccchhhhhh--------cccccceeeeeeccchHHHHHHHHH---HHHHHHHHhCCCCcEEEEeecccch
Confidence 3457788885433222211 1234689999999986543211100 012222222 24678889999986
Q ss_pred CcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 200 SPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 200 ~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+... .........+.++.+. ...+ .|++++.|+++++....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~E~SAk~~~~V~e~F~~l~ 175 (183)
T d1mh1a_ 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSALTQRGLKTVFDEAI 175 (183)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHcCC-ceEEEcCCCCCcCHHHHHHHHH
Confidence 54210 0112233343444433 4556 68999999999887653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.62 E-value=1.1e-08 Score=87.08 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
..+.++|+||+.......+.+. ...+.+..++|.+++|||+.
T Consensus 71 ~~i~~~D~pGli~ga~~g~~~~-~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 71 IPVKMVDVAGLVPGAHEGRGLG-NKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp EEEEEEECC----------------CCCSSTTCSEEEEEEETT
T ss_pred ccEEEEECCCcccchhcccchH-HHHHHhhccceEEEEEeccc
Confidence 4588999999876544433332 45577788999999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=3.5e-08 Score=77.45 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......... . .....+.+++|+|.....+. +.... .+.....+. ..|.++|.||+|+
T Consensus 51 ~~l~i~D~~g~~~~~~~~~-----~---~~~~~~~~ilv~d~~~~~Sf-~~~~~--~~~~~~~~~~~~~~i~lvgnK~Dl 119 (191)
T d2ngra_ 51 YTLGLFDTAGQEDYDRLRP-----L---SYPQTDVFLVCFSVVSPSSF-ENVKE--KWVPEITHHCPKTPFLLVGTQIDL 119 (191)
T ss_dssp EEEEEEEECCSGGGTTTGG-----G---GCTTCSEEEEEEETTCHHHH-HHHHH--THHHHHHHHCTTCCEEEEEECGGG
T ss_pred eeeeccccccchhhhhhhh-----h---cccccceeecccccchHHHH-HHHHH--HHHHHHhhcCCCCceEEEeccccc
Confidence 3466899999754322221 1 12257899999999866532 11100 022222222 3456788999998
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..... ..-..++..++.++++.. ..+ .|++++.++++++....
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~SAk~~~~V~e~f~~l~ 173 (191)
T d2ngra_ 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAV-KYVECSALTQKGLKNVFDEAI 173 (191)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS-CEEECCTTTCTTHHHHHHHHH
T ss_pred cccchhhhhhhhcccccccHHHHHHHHHHcCCC-eEEEEeCCCCcCHHHHHHHHH
Confidence 64321 001123344445554432 344 68999999999887553
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=2.5e-08 Score=81.47 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhh--ccCCChhHHHHHHhhcC-EEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY--RHLSSYPEAIHQIAFAD-VVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~--~~~~~~~~~~~ql~~~~-vivlNK 195 (257)
.+..+.||||||-.+...-+. .....+|.+|+||||..+....... .+-.........++.+. ++++||
T Consensus 82 ~~~~i~iiDtPGH~df~~~~~--------~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNK 153 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKNMI--------TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 153 (239)
T ss_dssp SSEEEEEEECCCCTTHHHHHH--------HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCEEEEEEECCCcHHHHHHHH--------HHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEEC
Confidence 456799999999876543322 3455689999999998764321100 00000112334455565 557999
Q ss_pred CCCCCcCCC--cchHHHHHHHHHHhCCC---CE-EEEeecCCcChhh
Q 025133 196 VDLVSPERS--GDSLDELEKEIHEINSL---AH-VIRSVRCQVDLSE 236 (257)
Q Consensus 196 ~D~~~~~~~--~~~l~~~~~~l~~~~~~---a~-i~~s~~~~~~~~~ 236 (257)
+|+++.++. .+...++...+...... .. +..|+..+.++-+
T Consensus 154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 999875531 12344555666554422 22 3368888777644
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=1.7e-08 Score=84.07 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=22.9
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.++|+|.||+|||||+|+|. +++.+.+.+.||.
T Consensus 114 ~v~vvG~PNvGKSsliN~L~----~~~~~~~~~~pG~ 146 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGI 146 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHH----TSCCC--------
T ss_pred EEEEEecCccchhhhhhhhh----ccceEEECCcccc
Confidence 48999999999999999999 6777888999996
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.55 E-value=1.7e-07 Score=75.56 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhh--ccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY--RHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~--~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
.++.+-||||||-.+...... ....-+|.+++|||+..+....... .+..........++.. .++++||
T Consensus 79 ~~~~i~iiDtPGH~df~~~~~--------~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK 150 (224)
T d1jnya3 79 KKYFFTIIDAPGHRDFVKNMI--------TGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 150 (224)
T ss_dssp SSCEEEECCCSSSTTHHHHHH--------HTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CCceeEEeeCCCcHHHHHHHH--------HHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEc
Confidence 456788999999876644332 2334579999999999875432211 0000011222334444 4667999
Q ss_pred CCCCCcCCCcchHHHHHHHH----HHhC---CCCEEE-EeecCCcChhh
Q 025133 196 VDLVSPERSGDSLDELEKEI----HEIN---SLAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l----~~~~---~~a~i~-~s~~~~~~~~~ 236 (257)
+|+...+.....++.+...+ ..+. ....++ +|+..+.|+.+
T Consensus 151 ~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 151 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 99987544323333333333 3332 223444 78888777643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.44 E-value=8.5e-09 Score=86.98 Aligned_cols=104 Identities=21% Similarity=0.133 Sum_probs=58.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|+||||||||+|+|+++.. +.+.+-|++|+.-. -|-+.| ++.-...+.+
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~----~~~anypftTi~pn--------------------~g~v~v--~d~r~~~l~~ 65 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVL----GNPANYPYATIDPE--------------------EAKVAV--PDERFDWLCE 65 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTT----TSTTCCSSCCCCTT--------------------EEEEEE--CCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC----CCcCCCCccCccCC--------------------eEEEec--cccchhhhhh
Confidence 489999999999999999996421 12234454422111 111111 1112222333
Q ss_pred HHHh--cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 114 LVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 114 ~~~~--~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
.... .....+.|+|.||+.........+. .+.+.+..++|.+++|||+..
T Consensus 66 ~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLG-n~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 66 AYKPKSRVPAFLTVFDIAGLTKGASTGVGLG-NAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp HHCCSEEECEEEEEECTGGGCCCCCSSSSSC-HHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCceecccceeeeccccccccccccccH-HHHHHHhhccceeEEEEeccC
Confidence 3221 1134578899999776533222221 234556678999999998854
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=9.2e-08 Score=74.29 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
+.+-+.|++|......... ......+.+++|+|.....+... ... .+.....+. ..+.++|-||+|+
T Consensus 50 ~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~ilv~d~~~~~Sf~~-~~~--~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 50 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDS-VLK--KWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHH-HHH--THHHHHHHHCTTCEEEEEEECGGG
T ss_pred Eeecccccccccccccccc--------chhhhhhhhheeeecccCCCHHH-HHH--HHHHHHhccCCcceEEEEEecccc
Confidence 3456889999543322211 11235689999999986543211 100 011222222 2356788899998
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
.... +..-..++.....++.+. ...+ .|++++. ++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~y~E~SAk~~~n~i~~~F~~~ 172 (179)
T d1m7ba_ 119 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGA-ATYIECSALQSENSVRDIFHVA 172 (179)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC-SEEEECBTTTBHHHHHHHHHHH
T ss_pred cccchhhHHHhhhhcCcchHHHHHHHHHHhCC-CeEEEEeCCCCCcCHHHHHHHH
Confidence 6421 100113444555555543 3455 6888876 588887643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=1e-06 Score=73.67 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+...|-++|+|--+||||||||+|++.
T Consensus 23 ~~~~P~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999953
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=1.2e-07 Score=81.11 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+-+-||||||-.+... .... ..-+|.++.||||..+....... ......+.+.|.++++||+|..
T Consensus 96 ~~inliDtPGh~dF~~ev~~a---------l~~~D~allVVda~eGv~~qT~~-----~~~~a~~~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAA---------LRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHH---------HHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHH---------HhhcCceEEEEecccCcchhHHH-----HHHHHHHcCCCeEEEEECcccc
Confidence 3466899999776533 3222 23369999999999876654432 2333455567899999999976
Q ss_pred C
Q 025133 200 S 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 162 ~ 162 (341)
T d1n0ua2 162 L 162 (341)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.28 E-value=1.5e-07 Score=76.80 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++|++++|++..++++.++. ++++.|++|||||||++.|...
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999998888877665 7999999999999999999863
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=4.5e-07 Score=72.88 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
...+++|.+|+|||||+|+|+... ..+++-++..
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~-~~~T~~vs~~ 129 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEK 129 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC-CCC-------
T ss_pred CeEEEECCCCCCHHHHHHhhcchh-hhhccCcccc
Confidence 478999999999999999998531 2344444433
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.19 E-value=7.4e-07 Score=74.83 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.0
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.....|-++|+|-.+||||||||+|++.
T Consensus 20 ~~~~lP~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 20 DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999999964
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.15 E-value=3.5e-07 Score=74.39 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++.++|++|+|+++.++++.++- ++++.|++|||||||++.|...
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999998888765 7999999999999999999863
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=4.6e-07 Score=73.28 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=38.2
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|++|+|++..++++.++- ++++.|++|||||||++.+..
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 6899999999998888776654 799999999999999999975
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.08 E-value=7e-07 Score=72.46 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=39.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|+|++..++++.+.- ++++.|++|||||||++.+..
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 48899999999998888777654 799999999999999999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.07 E-value=7.8e-07 Score=72.23 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=39.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|.|++..++++.+.- +++++|++|||||||++.|..
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g 51 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 58899999999998888777654 799999999999999999975
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.01 E-value=9.9e-07 Score=72.37 Aligned_cols=45 Identities=38% Similarity=0.474 Sum_probs=39.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|++++|++..++++.++- +++++|++|||||||++.|...
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 68999999999998888776554 7999999999999999999863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.01 E-value=9.6e-07 Score=72.57 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=39.0
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|++|+|++..++++.++. +++|+|++|||||||++.|..
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 7899999999998888877665 799999999999999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.00 E-value=1.3e-06 Score=71.19 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=36.9
Q ss_pred EEEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+.++|.+ +..+.+.++- .++|+|++|||||||++.|+.
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999966 4466666554 799999999999999999985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.00 E-value=9.1e-07 Score=71.30 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+-...+++|.+|+|||||+|+|+.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~ 119 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISP 119 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred ccceEEEECCCCccHHHHHHhhcc
Confidence 335778999999999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.97 E-value=1.2e-06 Score=70.54 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=37.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|++|+|++. ++++.++. ++++.|++|||||||++.|..-
T Consensus 1 mi~v~nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEEEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999874 56665554 7999999999999999999863
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=1.2e-06 Score=70.15 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-+++.|..|||||||++++..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999963
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.93 E-value=1.5e-06 Score=68.73 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|+++.|.. +++++.+.- +++++|++|||||||++.|...
T Consensus 2 ~lev~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence 3789999999954 677776654 6999999999999999999863
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=3.1e-06 Score=69.15 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=37.2
Q ss_pred EEEEccccccccCcc---cCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSH---ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~---~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|.+++ .+.+.++. +++|+|++|||||||++.|+.-
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 599999999997643 45665553 7999999999999999999863
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=2.8e-06 Score=68.98 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=36.0
Q ss_pred EEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|++++|.+ +.++.+.+.- .++|+|++|||||||++.|+..
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 688999999954 3356666554 6999999999999999999863
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=3.4e-06 Score=68.39 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=35.7
Q ss_pred EEEEccccccccCcc----cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+++.|++.. ++++.+.- +++|.|++|||||||++.|..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 478999999998753 35555443 799999999999999999975
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.82 E-value=3e-06 Score=68.25 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=35.1
Q ss_pred EEEEccccccccCcc----cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|++|.|++.. ++++.++- ++++.|++|||||||++.+..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence 478999999997643 34544443 799999999999999998875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.81 E-value=5e-06 Score=67.96 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=36.9
Q ss_pred EEEEccccccccCcc--cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++++|.++. .+.+.++- .++|+|++|||||||++.|+.
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 489999999997654 56666543 799999999999999999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.79 E-value=2.5e-06 Score=69.18 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=36.2
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|.|++ ..++++.++- ++++.|++|||||||++.|..
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g 53 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 4789999999954 3456665554 799999999999999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.76 E-value=5.6e-06 Score=67.73 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=37.4
Q ss_pred EEEEccccccccCc--ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|++. .++++.++- .++|+|++|||||||++.|+.-
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence 49999999999774 366666554 7999999999999999999863
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.73 E-value=0.00027 Score=55.68 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
.+|+|+ |.-|+||||+.-.|... ..|++++++-.|+.
T Consensus 2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~ 41 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 455555 88999999999988653 55899999988864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=9.3e-06 Score=62.78 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=18.4
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
+++.|-.|+|||||++++..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68899999999999999975
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.67 E-value=0.00034 Score=55.10 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=28.5
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
.+|.|+ +.-|+||||+.-.|... ..|++++++..|+
T Consensus 3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 466666 67899999999998653 5688999998774
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.57 E-value=1.8e-05 Score=58.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|+|||||||+++.|+..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999764
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=97.53 E-value=0.00095 Score=53.92 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=31.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
..|+|+|.=|+||||+.-.|... ..|++++++-.|++
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46788999999999999888653 56999999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=1.9e-05 Score=59.80 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
.++|+|++|+|||||++.++.. ..+.+++++...+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~ 40 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV 40 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 4899999999999999999864 34667777666543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=5.3e-06 Score=64.45 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=17.2
Q ss_pred EEEEecCCCcHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~L 52 (257)
+++.|.+|||||||++++
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.49 E-value=1.9e-05 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.|.++++|+|||||||+.+.|.+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57789999999999999999975
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.43 E-value=3.8e-05 Score=57.51 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++++++|++||||||+.+.|.++
T Consensus 2 ~klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.42 E-value=3.2e-05 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+-...|+|+|++|||||||+++|...
T Consensus 4 ~~~~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 4 PFFAKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp GGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CccceEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999864
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=5e-05 Score=57.07 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.9
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++..++++.|++||||||+.+.|.++
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567789999999999999999999753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.38 E-value=0.00025 Score=61.40 Aligned_cols=112 Identities=12% Similarity=0.250 Sum_probs=64.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+..+++|+|+.||||||++..++.+ .+++++..+.+-+. ...+.. ...++. ......+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE--~~~~~~------------~q~~v~-----~~~~~~~~ 217 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE--FDIDGI------------GQTQVN-----PRVDMTFA 217 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC--SCCSSS------------EEEECB-----GGGTBCHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc--cccCCC------------Ceeeec-----CCcCCCHH
Confidence 4468999999999999999999875 34556555553322 111100 000110 01233577
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK 171 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~ 171 (257)
..++..+ ..+||+|+|. -+.++......+ .....=..|+.-+.+.+....+..
T Consensus 218 ~~l~~~l--R~dPDvi~ig--EiRd~~ta~~a~------~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 218 RGLRAIL--RQDPDVVMVG--EIRDLETAQIAV------QASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHHG--GGCCSEEEES--CCCSHHHHHHHH------HHHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHH--hhcCCEEEec--CcCChHHHHHHH------HHHhcCCeEEEEeccCchHhhhhh
Confidence 7888777 5789999984 244443332211 112222567777777776655443
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.38 E-value=5.2e-05 Score=57.43 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=25.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
.+|+|+|++||||||+++.|... ..+.++.++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 36 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 36 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence 48999999999999999999763 3344544443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=5.3e-05 Score=60.86 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=33.2
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++.++++++.+++. +.+.+.- ++++.|++|||||||++.|...
T Consensus 1 s~il~~~dv~~~~~----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 1 SIVMQLQDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEEEEEEECCTTT----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CeEEEEECcccCce----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 36788999987653 3434332 7999999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.37 E-value=0.00024 Score=59.67 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=27.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecC
Q 025133 35 TVITGFLGAGKSTLVNYILNG-KHGKRIAVILNE 67 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~ 67 (257)
++|+|+.|||||||+++|+.. .+..++..+...
T Consensus 169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~ 202 (323)
T d1g6oa_ 169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 202 (323)
T ss_dssp EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred EEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence 799999999999999999986 456777777544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.35 E-value=4.2e-05 Score=57.97 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
++|+|++|+|||||++.++..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHhc
Confidence 789999999999999999863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.35 E-value=8.5e-05 Score=56.48 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+++++|.|++||||||+++.|... ..+.++..+.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999999999764 3455555554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.34 E-value=4.4e-05 Score=59.41 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
+++++|.|||||||+.++|.+. ..+.++.+++.|
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D 39 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence 5899999999999999999864 235666666654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=6.4e-05 Score=58.20 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...|+++|.|+|||||||+.+.|.++
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.33 E-value=4.4e-05 Score=61.50 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=31.0
Q ss_pred EEEEccccccccCcccCCCcce--eEEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSV--GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++ +..|++++-...-++.+ -++++.|++|||||||++.|..-
T Consensus 2 ~l~v-~~~k~~g~~~~~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 2 FLKV-RAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CEEE-EEEEEETTEEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEE-EEEEEECCEEEEEEEEeCCEEEEEECCCCChHHHHHHHHHcC
Confidence 3555 45677777543222222 37889999999999999999863
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.33 E-value=5.2e-05 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+|+++|++||||||+.+.|.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=6.5e-05 Score=57.38 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-+..+++++|+|||||||+++.|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999975
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.26 E-value=8.6e-05 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++|+|.|+|||||||+.+.|.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999975
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.19 E-value=0.00017 Score=55.12 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|-.|+|||||++++..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68899999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.18 E-value=0.00012 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-.+++++|++||||||+.+.|.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.18 E-value=0.00016 Score=55.30 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=24.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+|+|+|++|||||||.+.|... ..+..+.++.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~ 57 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence 6889999999999999999753 2344445544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=9e-05 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGK 59 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~ 59 (257)
.+++++||+||||||+++.|.+..++.
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 378899999999999999998765443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.16 E-value=0.00012 Score=54.88 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+--+|.++|++||||||+.+.|.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344788999999999999999975
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.13 E-value=0.00011 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++||||||+.+.|..+
T Consensus 7 ~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 7 NILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00014 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++||||||+.+.|.++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00012 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+--+|+++|+|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999975
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.00014 Score=59.98 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=33.9
Q ss_pred cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc-CC-------CCeEEEEecCC
Q 025133 22 SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG-KH-------GKRIAVILNEF 68 (257)
Q Consensus 22 ~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~-~~-------~~~v~ii~~~~ 68 (257)
.+++++.+.++- +++|+|++|||||||++.|+.. .+ +.+++++..++
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~ 106 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 106 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSC
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccc
Confidence 455666666554 7999999999999999999863 22 33566666553
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00015 Score=56.61 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.|+|+|.|||||||||..+.|.++
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00019 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHG 58 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~ 58 (257)
+.++|+||+||||||++++|++..++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 46888999999999999999976543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.97 E-value=8.8e-05 Score=61.30 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=27.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+.|+|+|+|.+||||||+.++|... ..+.+++++..|
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D 41 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 41 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence 35789999999999999999998653 225577888766
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00033 Score=57.58 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++.||.|+|+.++|||+|+|.|+.
T Consensus 30 ~~v~vvsi~G~~~sGKS~llN~l~~ 54 (277)
T d1f5na2 30 QPMVVVAIVGLYRTGKSYLMNKLAG 54 (277)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHcC
Confidence 3577899999999999999999985
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00021 Score=56.10 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeE
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRI 61 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v 61 (257)
.+++|+||+|||||||++.|+...+..+.
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~ 31 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQPLYDT 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTE
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCccCc
Confidence 47899999999999999999987654333
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.96 E-value=0.0002 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++|.|+|||||||..+.|.+.
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0002 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|+++|.|+|||||||..+.|.+
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999976
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.00022 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|.++++|++||||||+.+.|.+
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6677889999999999999965
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.80 E-value=0.0012 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..|-+++.||||+||||+++.|.++
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHhc
Confidence 3456899999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00033 Score=54.69 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=25.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccC-------CCCeEEEEecC
Q 025133 34 VTVITGFLGAGKSTLVNYILNGK-------HGKRIAVILNE 67 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~-------~~~~v~ii~~~ 67 (257)
+|+|+|++||||||+.+.|.... .+.++.++..|
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D 44 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecc
Confidence 57899999999999999996531 13456677654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00032 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCC
Q 025133 35 TVITGFLGAGKSTLVNYILNGKH 57 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~ 57 (257)
|+|+||+||||||+++.|++..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.71 E-value=0.00032 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|.|+|||||||+.+.|.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.00065 Score=53.89 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=53.8
Q ss_pred ceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-
Q 025133 150 AVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI- 225 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~- 225 (257)
..++|.++.|+.+.... ..++. +.......+.+-+||+||+|++++++ .+.+...........+++
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR------~Lv~a~~~~i~pvIvlnK~DL~~~~~----~~~~~~~~~~~~~~~~v~~ 77 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDEDD----LRKVRELEEIYSGLYPIVK 77 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHTTTSCEEE
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHcCCCEEEEEeCcccCCHHH----HHHHHHhhcccccceeEEE
Confidence 46789898888765421 11221 33334455667899999999998653 455666565555555555
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++|....
T Consensus 78 vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 78 TSAKTGMGIEELKEYL 93 (225)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred eccccchhHhhHHHHh
Confidence 7889999998877643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.60 E-value=0.00046 Score=52.18 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.4
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++|.|+|||||||..+.|.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999975
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.58 E-value=0.00046 Score=56.39 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=49.5
Q ss_pred ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeec
Q 025133 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 229 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~ 229 (257)
...+|+|++|+||.......+.. +...+. ..+.++|+||+|+++.+. .+.+.+.+++.+. ..++.++.
T Consensus 13 i~~~DvIl~V~DaR~P~ss~~~~-----l~~~~~--~Kp~IlVlNK~DLv~~~~----~~~w~~~f~~~~~-~~i~isa~ 80 (273)
T d1puja_ 13 LKLIDIVYELVDARIPMSSRNPM-----IEDILK--NKPRIMLLNKADKADAAV----TQQWKEHFENQGI-RSLSINSV 80 (273)
T ss_dssp GGGCSEEEEEEETTSTTTTSCHH-----HHHHCS--SSCEEEEEECGGGSCHHH----HHHHHHHHHTTTC-CEEECCTT
T ss_pred HHhCCEEEEEEECCCCCCCCCHH-----HHHHHc--CCCeEEEEECccCCchHH----HHHHHHHHHhcCC-ccceeecc
Confidence 45689999999998654432211 111111 468899999999998643 4555566655433 34567777
Q ss_pred CCcChhhhhc
Q 025133 230 CQVDLSEVLN 239 (257)
Q Consensus 230 ~~~~~~~l~~ 239 (257)
++.+...+..
T Consensus 81 ~~~~~~~~~~ 90 (273)
T d1puja_ 81 NGQGLNQIVP 90 (273)
T ss_dssp TCTTGGGHHH
T ss_pred cCCCccccch
Confidence 7777665544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.58 E-value=0.00064 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
....+.-++.|+|.|||||||+.+.|..
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445566899999999999999999974
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.52 E-value=0.00056 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..|-+++.||||+||||+++.+.++
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0013 Score=54.74 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=28.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~----~~~~~v~ii~~~ 67 (257)
-+|+|+|.+|||||||.+.|... ..+.++.+++.|
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D 119 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence 37899999999999999988542 346788888865
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.49 E-value=0.00081 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++|.|+|||||||+.+.|..
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHH
Confidence 455677889999999999999986
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.49 E-value=0.00063 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.|-+++.||+|+||||+++.++++
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567899999999999999999853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.48 E-value=0.00066 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|.|+|||||||..+.|.++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999863
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0055 Score=49.58 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+-.++.. .++..+.++..|-.- +......- ++..+.+.... ++..++....+
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~----~~~~a~~~--Gvd~d~v~~~~-----~~~~E~~~~~i 124 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLLCSQ-----PDTGEQALEIC 124 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc----CHHHHHHh--CCCHHHEEEec-----CCCHHHHHHHH
Confidence 8999999999999999988763 568888888887542 11111110 00001111000 12334555555
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc
Q 025133 112 EQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
..+.. ..++++++||..+...+
T Consensus 125 ~~l~~-~~~~~liViDSi~al~~ 146 (263)
T d1u94a1 125 DALAR-SGAVDVIVVDSVAALTP 146 (263)
T ss_dssp HHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHh-cCCCCEEEEECcccccc
Confidence 55553 56789999998874433
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.47 E-value=0.00064 Score=50.84 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=17.9
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|++||||||+.+.|.+
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67779999999999999975
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0007 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|.|+|||||||..+.|.++
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.00077 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|.+||||||+++.|-.
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.44 E-value=0.00067 Score=51.46 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
++|.|+|||||||..+.|.+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999763
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.00066 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHccC
Q 025133 35 TVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~ 56 (257)
++|+||+||||||+++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6699999999999999998653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.43 E-value=0.00066 Score=51.07 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|++||||||+.+.|.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55779999999999999975
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.0011 Score=52.83 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.0
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEe
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVIL 65 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~ 65 (257)
....+.+++.||||+||||+++.|.++. +..+..+.
T Consensus 49 ~~~~~~lll~GPpG~GKTt~a~~la~~~-~~~~~~~~ 84 (253)
T d1sxja2 49 SGVFRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQN 84 (253)
T ss_dssp TTSCSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH-Hhhhhccc
Confidence 3455789999999999999999998753 33444444
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.00077 Score=53.10 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+.|-++++||+|+||||+++.++++
T Consensus 30 ~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 30 SANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChHHHHHHHHHH
Confidence 345566899999999999999999753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00085 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.0
Q ss_pred ee-EEEEEecCCCcHHHHHHHHHc
Q 025133 32 VG-VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~-vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++ +++|+|..||||||+.+.|-.
T Consensus 2 mk~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 2 LRYIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 44 889999999999999998853
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.36 E-value=0.00069 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++.||||+||||++++|.++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.36 E-value=0.00083 Score=50.97 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++|.|+|||||||+.+.|..
T Consensus 5 Ivl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55779999999999999975
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.34 E-value=0.00087 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
+++.|+|||||||..+.|.+
T Consensus 6 iil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999975
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0011 Score=51.43 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=29.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
..|+|-|..||||||+++.|.+. ..|.+..++..+|+.
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~ 42 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 42 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence 46889999999999999999764 346566667777764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=96.29 E-value=0.0041 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++.|+||+|||.+.++|..+
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 6777899999999999999753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.19 E-value=0.0013 Score=52.30 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...+.++|.|++|+||||+++.|++.
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.19 E-value=0.0021 Score=51.95 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~ 70 (257)
+++|+|+||+|||||+..++.+ .++.++++++.|...
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~ 76 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV 76 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccch
Confidence 8999999999999999998742 568999999988653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.14 E-value=0.0042 Score=48.19 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g 69 (257)
++.|.|+||+|||+|+..++.+ ..+.++.+++.+..
T Consensus 28 ~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~ 66 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 66 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence 8999999999999999876532 23557788887654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.14 E-value=0.0014 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-+++|.|||||||||..+.|..
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999986
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.12 E-value=0.0021 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
+.-+|+|.|..||||||+++.|.++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 33489999999999999999998653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.11 E-value=0.012 Score=47.60 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=53.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++-|.|++++|||+|+..++.. .+|.+++++..|..- +...... |-+ .+.+.... +...++....
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~----~~~~a~~~Gvd---~d~i~~~~-----~~~~E~~~~~ 126 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARALGVN---TDELLVSQ-----PDNGEQALEI 126 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHTTCC---GGGCEEEC-----CSSHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC----CHHHHHHhCCC---chhEEEEc-----CCCHHHHHHH
Confidence 8999999999999999998753 557888999888542 1111111 110 01111110 1233455555
Q ss_pred HHHHHHhcCCCCEEEEecCCCC
Q 025133 111 LEQLVQRKERLDHILLETTGLA 132 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~ 132 (257)
++.+.. ...+++++||..+..
T Consensus 127 ~~~l~~-~~~~~liIiDSi~al 147 (268)
T d1xp8a1 127 MELLVR-SGAIDVVVVDSVAAL 147 (268)
T ss_dssp HHHHHT-TTCCSEEEEECTTTC
T ss_pred HHHHHh-cCCCcEEEEeccccc
Confidence 665553 567899999998843
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0014 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...|-+++.||+|+||||+++.|++
T Consensus 34 ~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 34 GNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCchhhHHHHHH
Confidence 3456689999999999999999875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.00 E-value=0.002 Score=49.62 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=25.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+|+|.|.-||||||+++.|.+. ..|.++.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~ 35 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 5889999999999999999764 3466665544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.98 E-value=0.0033 Score=49.45 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++|.|+||+|||+|+..++.+ ..+.++..++.+..
T Consensus 28 l~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~ 65 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEES 65 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence 8999999999999999999864 56778888887643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.96 E-value=0.0026 Score=52.22 Aligned_cols=36 Identities=28% Similarity=0.174 Sum_probs=26.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---C--CCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---K--HGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~--~~~~v~ii~~~ 67 (257)
.-+++|+|.+|||||||...|... . ....+++++.|
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D 67 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence 347899999999999999887542 1 23467777755
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0016 Score=51.05 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|-+++.||+|+||||+++.++++
T Consensus 33 ~~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 33 GKLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHH
Confidence 34566889999999999999999863
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0028 Score=51.34 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=33.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
....+++++|.-|+||||+.-.|... .+|+++.++..|++
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~ 47 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 44558899999999999998888653 56999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.91 E-value=0.015 Score=47.06 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=53.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++.|.|++|+|||||+-.+... ..+..+..+..|-.- +...... +-+ .+.+... .+...++....
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~----~~e~a~~~GvD---~d~il~~-----~~~~~E~~~~~ 129 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL----DPDYAKKLGVD---TDSLLVS-----QPDTGEQALEI 129 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC----CHHHHHHHTCC---GGGCEEE-----CCSSHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC----CHHHHHHhCCC---HHHeEEe-----cCCCHHHHHHH
Confidence 8999999999999999888653 457788888877542 1111111 110 0111111 11234556666
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCc
Q 025133 111 LEQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
+..+.. ...+++++||..+...|
T Consensus 130 ~~~l~~-~~~~~liIiDSi~al~~ 152 (269)
T d1mo6a1 130 ADMLIR-SGALDIVVIDSVAALVP 152 (269)
T ss_dssp HHHHHH-TTCEEEEEEECSTTCCC
T ss_pred HHHHHh-cCCCCEEEEeccccccc
Confidence 665553 56789999999986555
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.0022 Score=47.93 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++.+.|..|||||||++.+++.
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCccHHHHHHHHHhh
Confidence 37899999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.86 E-value=0.0012 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++.|+||+|||++++.+++.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5677899999999999999753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.80 E-value=0.0025 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll 53 (257)
-+++|||..||||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999885
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.0018 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..|-++++|++|+||||+++.++++
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4456899999999999999999763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0028 Score=48.28 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.|+|+||+|||+|+..++.
T Consensus 25 v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999999975
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0023 Score=50.29 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
+++.|+|-|+-||||||+++.|.+.-
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.68 E-value=0.0029 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++|.|++|+|||||+++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999999764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.003 Score=53.67 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~L 52 (257)
+.++|+ ++|.+...+.-..-.+.+|+|+.||||||++.+|
T Consensus 6 l~l~NF-ks~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 6 LELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHH
T ss_pred EEEeCe-eeeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHH
Confidence 455665 2444432211112348899999999999999998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.50 E-value=0.0022 Score=50.90 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=48.7
Q ss_pred ceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-
Q 025133 150 AVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI- 225 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~- 225 (257)
..++|.++.|+.+.... ..++. +......-+.+-+||+||+|+.++++....+..+......+ ..+++
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR------~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~--g~~v~~ 79 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDR------FLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI--GYDVYL 79 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHH------HHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH--TCCEEE
T ss_pred ccccCEEEEEEECCCCCCCHHHHHH------HHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhc--ccccee
Confidence 46789888888775321 12221 23333444557799999999998653211222232222222 23444
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|+.++.++++|....
T Consensus 80 ~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 80 TSSKDQDSLADIIPHF 95 (231)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred eecCChhHHHHHHHhh
Confidence 7888888888877644
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0044 Score=48.24 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
.+|+|.|+.||||||+++.|.+. ..|.++..+ .+|+
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~-~~p~ 41 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFPE 41 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-eCCC
Confidence 46888899999999999999764 346665443 3554
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.49 E-value=0.0033 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+|||+++++|.++
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4899999999999999999753
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.0056 Score=51.78 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=26.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHH----cc--CCCCeEEEEec
Q 025133 31 SVGVTVITGFLGAGKSTLVNYIL----NG--KHGKRIAVILN 66 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll----~~--~~~~~v~ii~~ 66 (257)
.-++++|+|+||+||||++..++ .. .++.++.+...
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~Ap 203 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 203 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecC
Confidence 35799999999999999986643 22 34566666663
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.27 E-value=0.0048 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+++|+|..||||||+.+.|.+
T Consensus 1 M~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 1 MKLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.00046 Score=52.40 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
.+.-++++|+|+.||||||++.+|.
T Consensus 21 ~f~~~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 21 DLDELVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp CHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHH
Confidence 3445689999999999999999994
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.21 E-value=0.0042 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-+++.||||+|||.|.++|.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 45788999999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.18 E-value=0.0047 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+|||++++++..+
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 4899999999999999999864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.0051 Score=47.95 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--------CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--------~~~~~v~ii~~~~g 69 (257)
++.|+|+||+|||||+..++.. ..+.++..+..+..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 79 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence 8999999999999999998643 12456666665544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.05 E-value=0.0068 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++|.|++|+||||+...|+.+
T Consensus 17 gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999999854
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.015 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.-++++|+||+|||+++..|..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHH
Confidence 3567999999999999999975
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.0058 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+|||++++++..+
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHHH
Confidence 4899999999999999999853
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.95 E-value=0.006 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+|||++++++..+
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 4899999999999999999864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.012 Score=47.22 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.7
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+....+++++|.-|+||||+.-.|... ..|+++.++..|++.
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~ 60 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 60 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 345668999999999999998888542 458999999999763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.78 E-value=0.0083 Score=47.08 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|.|+||+|||||.-.++.
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 899999999999999998875
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.78 E-value=0.0053 Score=50.01 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=28.6
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
...+.++++-..|.--+. .....+...++...+...+++++...
T Consensus 239 ~~~~~~~~iDEpe~~Lhp---~~~~~l~~~l~~~~~~~QviitTHsp 282 (308)
T d1e69a_ 239 IKPSPFYVLDEVDSPLDD---YNAERFKRLLKENSKHTQFIVITHNK 282 (308)
T ss_dssp TSCCSEEEEESCCSSCCH---HHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred hccCchhhhhhccccCCH---HHHHHHHHHHHHhccCCEEEEEECCH
Confidence 344578888777653221 23567777888877777777776664
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.012 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
..+++|-|.-||||||+++.|.++.
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999999999998753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.54 E-value=0.011 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++|.|++|+||||+.-.|+.+
T Consensus 17 gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 5899999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.51 E-value=0.008 Score=45.53 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++|.|++|+||||+.-.|+.+
T Consensus 16 gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 4889999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.009 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.|++|+|||++++++..+
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcchhHHHHHHHH
Confidence 5899999999999999999864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.27 E-value=0.011 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.+++.||||+|||++.+.|++.
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.14 E-value=0.014 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.|+|+||+|||+|+..++.
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999999974
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.10 E-value=0.03 Score=47.64 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.2
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|+||+|||+++..|..
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 46779999999999988864
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=94.04 E-value=0.021 Score=46.07 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+..++|.|.=|+||||+.-.|... ..|+++.+|-.|++.
T Consensus 2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~ 42 (289)
T d2afhe1 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 446778999999999998888542 459999999999863
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=94.04 E-value=0.053 Score=39.11 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=46.5
Q ss_pred EEEEEecCCCcHHH-HHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKST-LVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKST-li~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+-+++||=.||||| |++.+-+. ..++++.++.+..-+ . ...... ........|..+....++...+
T Consensus 4 L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~-R-~~~~i~----------s~~g~~~~~~~~~~~~~~~~~~ 71 (139)
T d2b8ta1 4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SIRNIQ----------SRTGTSLPSVEVESAPEILNYI 71 (139)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GCSSCC----------CCCCCSSCCEEESSTHHHHHHH
T ss_pred EEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccc-c-ccceEE----------cccCceeeeEEeccchhhHHHH
Confidence 56889999999999 45544332 347888888765432 1 111111 1112223344444444444333
Q ss_pred HHHHHhcCCCCEEEEecCCCCC
Q 025133 112 EQLVQRKERLDHILLETTGLAN 133 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~ 133 (257)
.... ...++++|+||=.=+..
T Consensus 72 ~~~~-~~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 72 MSNS-FNDETKVIGIDEVQFFD 92 (139)
T ss_dssp HSTT-SCTTCCEEEECSGGGSC
T ss_pred Hhhc-cccCcCEEEechhhhcc
Confidence 2111 12368899999666554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.98 E-value=0.015 Score=47.01 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=21.9
Q ss_pred EEEEecCCCcHHHHH-HH---HHcc--CCCCeEEEEecC
Q 025133 35 TVITGFLGAGKSTLV-NY---ILNG--KHGKRIAVILNE 67 (257)
Q Consensus 35 v~i~G~~gsGKSTli-~~---Ll~~--~~~~~v~ii~~~ 67 (257)
++|.|+|||||||++ ++ |+.. .+..++++++.-
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t 55 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 55 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence 567799999999865 33 3322 234578888753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.034 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.+|+|-|.-||||||+++.|.+.
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.72 E-value=0.02 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...+++|.|+.|.|||||+++++++
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.018 Score=44.94 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.|.|+||+|||+|...++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999974
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.59 E-value=0.022 Score=44.26 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=23.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+.+.|++|+|||-|++++.++ .++..+..+.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~ 71 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 71 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhccCccceEEec
Confidence 679999999999999999764 3344444443
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.16 Score=36.16 Aligned_cols=35 Identities=26% Similarity=0.134 Sum_probs=27.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
+.+++||=.|||||-+-+.+.. ..++++.++.+..
T Consensus 4 L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~ 40 (133)
T d1xbta1 4 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 40 (133)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred EEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 5688999999999977776643 4578888887653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.024 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
....+++++||+|+|||.|.+.|.+.
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHhh
Confidence 34557899999999999999999764
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.024 Score=43.20 Aligned_cols=35 Identities=23% Similarity=0.139 Sum_probs=29.0
Q ss_pred eEEEEEecC-CCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 33 GVTVITGFL-GAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~-gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
+.++|+|.- |+||||+.-.|... ..|++++++..+
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d 39 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV 39 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 468899995 99999999999764 569999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.024 Score=43.50 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-++++|+||+|||+++..|..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 468999999999999999975
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.027 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=19.3
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll 53 (257)
.+++|+|+..+||||+++.+.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 589999999999999999984
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.023 Score=44.64 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++.|++|+||||+++.+.+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999865
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.80 E-value=0.016 Score=47.90 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll 53 (257)
+++.|+||+||||+++.+.
T Consensus 31 vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp EEEECCGGGCTTHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 7999999999999999985
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.78 E-value=0.03 Score=43.89 Aligned_cols=20 Identities=40% Similarity=0.399 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll 53 (257)
+++|+||..+||||+++.+.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 79999999999999999974
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.035 Score=47.19 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii 64 (257)
++|+|.+|||||++++.++.. ..+..+.++
T Consensus 53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii 84 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 84 (433)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 799999999999999888653 334444443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.028 Score=43.29 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++.|++|+||||+++.+++
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999875
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.50 E-value=0.044 Score=45.52 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=26.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
++-.|.|-|.-|+||||+++.|.++-..+...+...||
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~EP 42 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEP 42 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCC
T ss_pred ceEEEEEECCccCCHHHHHHHHHHHhccCCCeEEEeCc
Confidence 34468999999999999999998752211223344565
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.34 E-value=0.028 Score=45.71 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=21.6
Q ss_pred EEEEecCCCcHHHHHHH----HHcc--CCCCeEEEEecC
Q 025133 35 TVITGFLGAGKSTLVNY----ILNG--KHGKRIAVILNE 67 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~----Ll~~--~~~~~v~ii~~~ 67 (257)
++|.|++||||||.+-. |+.. .+..++.+++.-
T Consensus 27 ~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t 65 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65 (318)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence 66779999999976533 3332 233577777744
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.04 Score=43.76 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc------------CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG------------KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~------------~~~~~v~ii~~~~g 69 (257)
+++|+|.+|+|||||+-.|+.+ ..+.++.++..|..
T Consensus 31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~ 78 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 78 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence 7889999999999999887532 12457888887765
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=0.034 Score=39.12 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=25.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CC-CCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KH-GKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~-~~~v~ii~~~ 67 (257)
-.++++|.+||||||+.++|... .. ++.+.++..+
T Consensus 7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ 45 (122)
T d1g8fa3 7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 45 (122)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence 46899999999999999999642 23 4555555433
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.19 E-value=0.05 Score=45.15 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEecCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEF 68 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~--~~~~v~ii~~~~ 68 (257)
++-.|.|-|.-||||||+++.|.+.- .+.+ .++..||
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~-v~~~~EP 42 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHHFAITPNR-ILLIGEP 42 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTSGGG-EEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHhhcCCc-eEEEeCc
Confidence 34468999999999999999998752 2223 4455565
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.58 E-value=0.071 Score=37.58 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=24.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEec
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN 66 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~ 66 (257)
..+.++.++.|||||+.+-.++. ..+.++.++..
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~-~~~~~vli~~P 41 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA-AQGYKVLVLNP 41 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH-TTTCCEEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH-HcCCcEEEEcC
Confidence 45788999999999998866553 23556666553
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.05 E-value=0.072 Score=44.09 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=23.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
-.|.|-|.-|+||||+++.|.+...+..+ ....||
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~~~~v-~~~~EP 39 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDI-VYVPEP 39 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CCE-EEECCC
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhCCCCe-EEeccc
Confidence 35889999999999999999765333333 344565
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.00 E-value=0.052 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.=+++.||+|+|||-+.+.|.+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.97 E-value=0.047 Score=41.97 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++.||+++|||+++.+|+..
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHHH
Confidence 47899999999999999999764
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.93 E-value=0.16 Score=36.50 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=56.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
-+-+|+||=.|||||-+-+.+.+ ..++++.++.+..-+ ......+.+. .+. ...|+......++...
T Consensus 8 ~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~--Ry~~~~i~sh-~g~--------~~~a~~~~~~~~~~~~ 76 (141)
T d1xx6a1 8 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN--RYSKEDVVSH-MGE--------KEQAVAIKNSREILKY 76 (141)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECT-TSC--------EEECEEESSSTHHHHH
T ss_pred eEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEecccc--ccccceeeec-ccc--------eEEEEEecchhhhhhh
Confidence 46688999999999987777643 447888888765321 1111111111 111 1223333333333221
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
. ..++++|+||=.=+...... +... .+. .....++++=+|...
T Consensus 77 ----~--~~~~dvI~IDE~QFf~d~~~-~~~~---~l~-~~g~~Viv~GLd~Df 119 (141)
T d1xx6a1 77 ----F--EEDTEVIAIDEVQFFDDEIV-EIVN---KIA-ESGRRVICAGLDMDF 119 (141)
T ss_dssp ----C--CTTCSEEEECSGGGSCTHHH-HHHH---HHH-HTTCEEEEEECSBCT
T ss_pred ----h--cccccEEEEeehhhccccHH-HHHH---hhe-eCCcEEEEEEecccc
Confidence 1 34689999996665544222 1110 111 123457777777754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.82 E-value=0.085 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...+++++||+|+|||.+.+.|.+.
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHH
Confidence 3447899999999999999999764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.33 E-value=0.094 Score=43.97 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...-+++.||+|+|||-+.++|...
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHhh
Confidence 4456999999999999999999753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.28 E-value=0.14 Score=41.00 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-.+.+.|++++|||+|++.|...
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHH
Confidence 447888999999999999999753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.35 E-value=0.21 Score=37.86 Aligned_cols=26 Identities=8% Similarity=-0.207 Sum_probs=22.8
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...+-+++.|++|+||||++..|.+
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999999999875
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.42 E-value=0.18 Score=34.80 Aligned_cols=33 Identities=30% Similarity=0.284 Sum_probs=19.8
Q ss_pred eEEEEEecCCCcHHHHH-HHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITGFLGAGKSTLV-NYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli-~~Ll~~--~~~~~v~ii~ 65 (257)
..+++.+++|||||..+ ..++.. ..+.++.++.
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~ 43 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA 43 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence 35678889999999443 344332 2344555554
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.20 E-value=3.6 Score=30.22 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=31.3
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhh
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~ 238 (257)
..-+++|+=-++.+..++....++.+...++..++..+++ .|+.- -+..++.
T Consensus 137 ~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl-~n~~~~~ 189 (202)
T d2p6ra3 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA-PNVTEIA 189 (202)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC-TTHHHHH
T ss_pred hhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCC-CcHHHHH
Confidence 3456777766666655544444566667777788888877 45442 2444443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.03 E-value=0.24 Score=40.48 Aligned_cols=17 Identities=47% Similarity=0.722 Sum_probs=14.8
Q ss_pred eEEEEEecCCCcHHHHH
Q 025133 33 GVTVITGFLGAGKSTLV 49 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli 49 (257)
-+.+|.|.+|+|||||-
T Consensus 15 ~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 15 DVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp CEEEEEECTTSCHHHHT
T ss_pred CEEEEEccCCCCccccc
Confidence 46799999999999964
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.24 Score=40.33 Aligned_cols=17 Identities=47% Similarity=0.722 Sum_probs=14.6
Q ss_pred eEEEEEecCCCcHHHHH
Q 025133 33 GVTVITGFLGAGKSTLV 49 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli 49 (257)
-+-+|.|.+|+|||||-
T Consensus 15 ~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 15 DVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEEccCCCCcccce
Confidence 36689999999999964
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=82.50 E-value=0.34 Score=38.02 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=19.9
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+.|+ +|.|.+|+||+++.+.|-.
T Consensus 21 ~~~~pv-lI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 21 CAECPV-LITGESGVGKEVVARLIHK 45 (247)
T ss_dssp TCCSCE-EEECSTTSSHHHHHHHHHH
T ss_pred CCCCCE-EEECCCCcCHHHHHHHHHH
Confidence 345565 6779999999999999864
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.22 E-value=0.3 Score=40.00 Aligned_cols=17 Identities=53% Similarity=0.759 Sum_probs=14.9
Q ss_pred eEEEEEecCCCcHHHHH
Q 025133 33 GVTVITGFLGAGKSTLV 49 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli 49 (257)
-+.+|.|.+|+|||||.
T Consensus 15 d~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 15 DVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEEccCCCCcccce
Confidence 35689999999999986
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=80.91 E-value=0.84 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=22.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~ 65 (257)
+++|+|...||||.+...|+.. +.++.++.
T Consensus 1 iiLVtGGarSGKS~~AE~l~~~--~~~~~YiA 30 (180)
T d1c9ka_ 1 MILVTGGARSGKSRHAEALIGD--APQVLYIA 30 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS--CSSEEEEE
T ss_pred CEEEECCCCccHHHHHHHHHhc--CCCcEEEE
Confidence 4789999999999999999753 33444444
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.16 E-value=0.58 Score=34.62 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHc---cCCCCeEEEEec
Q 025133 35 TVITGFLGAGKSTLVNYILN---GKHGKRIAVILN 66 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~---~~~~~~v~ii~~ 66 (257)
.++.+|.|+|||...-.++. ...+.++.++.+
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 46779999999974333332 123556666664
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=80.10 E-value=0.28 Score=38.97 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHH-HHHHHHcc--CCCCeEEEEec
Q 025133 34 VTVITGFLGAGKST-LVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 34 vv~i~G~~gsGKST-li~~Ll~~--~~~~~v~ii~~ 66 (257)
.+++.++.|||||+ ++-.++.. ..+.++.++.+
T Consensus 11 ~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~P 46 (305)
T d2bmfa2 11 LTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP 46 (305)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEES
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 47889999999995 44444432 23667777764
|