Citrus Sinensis ID: 025168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHEEEcccccccccc
cccccHHEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEcccccccccc
megkeedvklgankfserqpigtsaqsdkdykepppaplfepgelkswSFYRAGIAEFMATFLFLYITVLTVMGvsksntkcsTVGIQGIAWAFGGMIFALVYCTagisgghinpaVTFGLLLARKLSLTRAVFYMVMQCLGAVcgagvvkgfegsknyerlggganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrnardshvpilaplpIGFAVFLVHLAtipitgtginparslGAAIifnkdhawddhv
megkeedvklgankfserqpigtsaqsdkdykepPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFnkdhawddhv
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV
*******************************************ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW****
************************************APLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV
********KLGANKFSERQ**************PPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV
*******V********************KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
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MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.992 0.891 0.894 1e-133
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.992 0.885 0.895 1e-132
Q39196287 Probable aquaporin PIP1-4 no no 0.992 0.888 0.887 1e-131
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.992 0.882 0.880 1e-131
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.992 0.882 0.884 1e-131
Q08451286 Probable aquaporin PIP-ty N/A no 0.988 0.888 0.882 1e-130
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.992 0.873 0.870 1e-127
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.992 0.885 0.848 1e-126
P25794289 Probable aquaporin PIP-ty N/A no 0.996 0.885 0.837 1e-125
P61838286 Aquaporin PIP1.1 OS=Vicia N/A no 0.992 0.891 0.886 1e-124
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/256 (89%), Positives = 243/256 (94%), Gaps = 1/256 (0%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
           MEGKEEDV++GANKF ERQPIGTSAQSDKDYKEPPPAPLFEPGEL SWSF+RAGIAEF+A
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIA 60

Query: 61  TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
           TFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct: 61  TFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query: 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
           L LARKLSLTRAV+Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN +AHGYTKG GLG
Sbjct: 121 LFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLG 179

Query: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240
           AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
Sbjct: 180 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 239

Query: 241 LGAAIIFNKDHAWDDH 256
           LGAAIIFNKD+AWDDH
Sbjct: 240 LGAAIIFNKDNAWDDH 255
Water channel required to facilitate the transport of water across cell membrane. Essential for the water permeability of the plasma membrane and for the morphology of the root system. Its function is impaired by Hg(2+). Inhibited by cytosolic acidosis which occurs during anoxia in roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|P61838|PIP11_VICFA Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
89212808287 aquaporin 1 [Gossypium hirsutum] 0.996 0.891 0.949 1e-140
292653529267 aquaporin PIP1;13 [Gossypium hirsutum] 0.996 0.958 0.949 1e-140
292653527267 aquaporin PIP1;12, partial [Gossypium hi 0.996 0.958 0.941 1e-139
300793582287 TPA_inf: aquaporin PIP1;4 [Gossypium hir 0.996 0.891 0.937 1e-139
345462634299 aquaporin PIP1 [Dimocarpus longan] 0.996 0.856 0.906 1e-138
257786547287 plasma membrane aquaporin 1 [Hevea brasi 0.996 0.891 0.925 1e-138
255537497287 Aquaporin PIP1.3, putative [Ricinus comm 0.996 0.891 0.929 1e-137
150416573287 aquaporin PIP1-2 [Gossypium hirsutum] 0.996 0.891 0.929 1e-137
300793584278 TPA_inf: aquaporin PIP1;5 [Gossypium hir 0.996 0.920 0.929 1e-137
255045887288 plasma membrane intrinsic protein PIP1.3 0.996 0.888 0.933 1e-137
>gi|89212808|gb|ABD63904.1| aquaporin 1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/256 (94%), Positives = 250/256 (97%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
           MEGKEEDVKLGANKFSERQPIGTSAQ+DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+A
Sbjct: 1   MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVA 60

Query: 61  TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
           TFLFLYITVLTVMGVS+S TKC+TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct: 61  TFLFLYITVLTVMGVSQSKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query: 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
           LLLARKLSLTRAVFYM+MQCLGA+CGAGVVKGFEG   YE LGGGANVV HGYTKGDGLG
Sbjct: 121 LLLARKLSLTRAVFYMIMQCLGAICGAGVVKGFEGDSRYEMLGGGANVVNHGYTKGDGLG 180

Query: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240
           AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
Sbjct: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240

Query: 241 LGAAIIFNKDHAWDDH 256
           LGAAII+NKDHAWDDH
Sbjct: 241 LGAAIIYNKDHAWDDH 256

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|292653529|gb|ADE34282.1| aquaporin PIP1;13 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|292653527|gb|ADE34281.1| aquaporin PIP1;12, partial [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|300793582|tpg|DAA33858.1| TPA_inf: aquaporin PIP1;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|345462634|gb|AEN95117.1| aquaporin PIP1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|257786547|gb|ACV66985.1| plasma membrane aquaporin 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255537497|ref|XP_002509815.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223549714|gb|EEF51202.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|150416573|gb|ABR68794.1| aquaporin PIP1-2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|300793584|tpg|DAA33859.1| TPA_inf: aquaporin PIP1;5 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255045887|gb|ACU00100.1| plasma membrane intrinsic protein PIP1.3 [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.996 0.850 0.894 2.1e-123
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.992 0.891 0.886 1.5e-122
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.992 0.891 0.886 3.1e-122
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.992 0.888 0.887 5.1e-122
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.992 0.888 0.867 8.5e-120
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.879 0.807 0.753 1.2e-90
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.914 0.845 0.728 1.5e-90
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.910 0.821 0.726 8.3e-90
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.910 0.821 0.721 2.2e-89
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.883 0.790 0.730 1.6e-88
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 230/257 (89%), Positives = 244/257 (94%)

Query:     1 MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
             MEGKEEDV++GANKF ERQPIGTSAQSDKDYKEPPPAPLFEPGEL SWSF+RAGIAEF+A
Sbjct:     1 MEGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIA 60

Query:    61 TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
             TFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct:    61 TFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query:   121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
             L LARKLSLTRAV+Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN +AHGYTKG GLG
Sbjct:   121 LFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLG 179

Query:   181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240
             AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
Sbjct:   180 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 239

Query:   241 LGAAIIFNKDHAWDDHV 257
             LGAAIIFNKD+AWDDHV
Sbjct:   240 LGAAIIFNKDNAWDDHV 256
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA;RCA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009414 "response to water deprivation" evidence=IEP;IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0015670 "carbon dioxide transport" evidence=IMP
GO:0006096 "glycolysis" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.89530.99220.8854yesno
Q8LAA6PIP15_ARATHNo assigned EC number0.86770.99220.8885nono
P93004PIP27_ARATHNo assigned EC number0.750.88320.8107nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.83330.99220.8854nono
Q84RL7PIP21_MAIZENo assigned EC number0.67170.94940.8413N/Ano
P30302PIP23_ARATHNo assigned EC number0.72190.91050.8210nono
Q9AQU5PIP13_MAIZENo assigned EC number0.87020.99220.8732N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.84880.99220.8854N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.71300.88710.7916N/Ano
P61837PIP11_ARATHNo assigned EC number0.88670.99220.8916nono
Q08451PIP1_SOLLCNo assigned EC number0.88230.98830.8881N/Ano
P61838PIP11_VICFANo assigned EC number0.88670.99220.8916N/Ano
P42767PIP1_ATRCANo assigned EC number0.72340.91050.8297N/Ano
Q06611PIP12_ARATHNo assigned EC number0.89450.99220.8916nono
Q9ATN0PIP16_MAIZENo assigned EC number0.81880.98050.8513N/Ano
Q39196PIP14_ARATHNo assigned EC number0.88710.99220.8885nono
Q41870PIP11_MAIZENo assigned EC number0.83330.98830.8850N/Ano
Q9XF59PIP12_MAIZENo assigned EC number0.88410.99220.8823N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.71780.90270.8140N/Ano
Q08733PIP13_ARATHNo assigned EC number0.88670.99220.8916nono
Q9ATM8PIP22_MAIZENo assigned EC number0.66660.94940.8356N/Ano
P25794PIP2_PEANo assigned EC number0.83780.99610.8858N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.72570.89100.7979N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.74780.88320.8049nono
Q9ATM6PIP24_MAIZENo assigned EC number0.72680.89100.7951N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.72680.89100.7923N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.88030.99220.8823nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.72260.92210.8525nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III0271
SubName- Full=Putative uncharacterized protein; (288 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-87
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-67
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-62
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-38
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 6e-26
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-25
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-24
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-22
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-17
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-16
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-14
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-12
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 4e-12
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.002
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  259 bits (663), Expect = 1e-87
 Identities = 110/213 (51%), Positives = 138/213 (64%), Gaps = 13/213 (6%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
           CT  ISG H+NPAVTF LL+ R++SL RA++Y++ Q LGA+CGA ++KG   +   +R G
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGV--TNGLQRAG 113

Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 223
           G AN +A G   G     EII TF LVYTVF+ TD  RN    HV   APL IGFAVFL 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLN 170

Query: 224 HLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
           HLA  P TG  +NPARS G A++  K   WDDH
Sbjct: 171 HLAGGPYTGASMNPARSFGPAVVLWK---WDDH 200

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.74
PLN00026298 aquaporin NIP; Provisional 99.7
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.7
PLN00183274 putative aquaporin NIP7; Provisional 99.7
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.67
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.65
PLN00184296 aquaporin NIP1; Provisional 99.62
PLN00166250 aquaporin TIP2; Provisional 99.59
PLN00027252 aquaporin TIP; Provisional 99.56
PRK05420231 aquaporin Z; Provisional 99.55
PLN00167256 aquaporin TIP5; Provisional 99.52
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.51
PTZ00016294 aquaglyceroporin; Provisional 99.47
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.45
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.62
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-43  Score=304.24  Aligned_cols=200  Identities=52%  Similarity=0.772  Sum_probs=179.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHH
Q 025168           44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLL  123 (257)
Q Consensus        44 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~  123 (257)
                      +.++++.+|++++||++|++++|++|+++.....   .....+.+.+++.+|+.+++.+++++++||||+|||||+++++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            4567889999999999999999999998876553   1234567889999999999999999999999999999999999


Q ss_pred             ccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHH-hcccccc
Q 025168          124 ARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRN  202 (257)
Q Consensus       124 ~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~-~~~~~~~  202 (257)
                      .|++++.+++.||++|++|+++|+++.+.+.+.+ +.....+...+.++.+..++++.|++.||+|+++++. ..|+|++
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ-YNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc-cccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            9999999999999999999999999999999885 3334445566788899999999999999999999999 7777765


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168          203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV  257 (257)
Q Consensus       203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w  257 (257)
                             .+.|+.||+++...+++.+++||++|||||+|||+++.+   .|++||
T Consensus       160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hw  204 (238)
T KOG0223|consen  160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHW  204 (238)
T ss_pred             -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEE
Confidence                   388999999999999999999999999999999999997   699998

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-98
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-98
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-98
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-97
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-97
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-34
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 4e-34
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-29
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-29
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 4e-29
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-28
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 9e-25
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-23
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-23
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 9e-22
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-21
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-14
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-14
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 6e-14
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 7e-14
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 8e-14
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 1e-13
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 8e-13
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-12
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 8e-12
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 9e-12
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-11
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 4e-11
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-08
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 3e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (909), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 190/231 (82%), Gaps = 1/231 (0%)
Query: 26  QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
           Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK    C +V
Sbjct: 13  QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86  GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
           G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73  GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
           G G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
           SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN +  WDD 
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-121
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-101
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-95
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-90
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-90
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 3e-89
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-89
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-89
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-87
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-86
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-67
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-43
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 9e-43
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 9e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  346 bits (890), Expect = e-121
 Identities = 173/241 (71%), Positives = 191/241 (79%), Gaps = 1/241 (0%)

Query: 16  SERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV 75
            E      + Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G 
Sbjct: 26  KEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGH 85

Query: 76  SKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFY 135
           SK    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ Y
Sbjct: 86  SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVY 145

Query: 136 MVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 195
           M+ QCLGA+CG G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFS
Sbjct: 146 MIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204

Query: 196 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD 255
           ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN +  WDD
Sbjct: 205 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 264

Query: 256 H 256
            
Sbjct: 265 Q 265
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.75
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.63
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.62
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.61
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.6
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.59
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.59
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.58
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.57
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.56
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.55
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.5
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.49
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=2.7e-51  Score=363.61  Aligned_cols=230  Identities=74%  Similarity=1.270  Sum_probs=185.3

Q ss_pred             ccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhc
Q 025168           27 SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTA  106 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~  106 (257)
                      ..||+++|++.+..+.+|+++++++|++++||+|||+|+|++++++.+.....++....+++.+++++|+.+++++++++
T Consensus        37 ~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g  116 (304)
T 3cn5_A           37 HGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA  116 (304)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEee
Confidence            35888888888888889999999999999999999999999999877654333333456778899999999999999999


Q ss_pred             CcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHH
Q 025168          107 GISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGT  186 (257)
Q Consensus       107 ~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T  186 (257)
                      ++||||+|||||+++++.|+++|++++.||++|++||++|+++++.++++. ++..+.+...+.++.+..++|+.|+++|
T Consensus       117 ~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~~~~~g~~~~~~~~s~~~~f~~E~i~T  195 (304)
T 3cn5_A          117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGT  195 (304)
T ss_dssp             TTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHTTTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcccccCCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876 5555555555667788899999999999


Q ss_pred             HHHHHHHHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168          187 FVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV  257 (257)
Q Consensus       187 ~~l~~~il~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w  257 (257)
                      |+|+++|+.+.|+++...+++.+.+.|+.||++++++.++++++||++||||||||||+++++++.|+++|
T Consensus       196 fiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~W  266 (304)
T 3cn5_A          196 FVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQW  266 (304)
T ss_dssp             HHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTT
T ss_pred             HHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceE
Confidence            99999999988876644322234589999999999999999999999999999999999976667899998
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-46
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-41
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 9e-36
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 5e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 9e-33
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 0.002
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  152 bits (384), Expect = 5e-46
 Identities = 85/217 (39%), Positives = 120/217 (55%), Gaps = 13/217 (5%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMG----VSKSNTKCSTVGIQGIAWAFGGMIF 99
           E K   F+RA +AEF+A  LF++I++ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
            L      ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+    ++ G   S   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 160 ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFA 219
                G N +A G   G GLG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 124 N--SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 220 VFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
           V L HL  I  TG GINPARS G+++I    H + DH
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVI---THNFQDH 211
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.55
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.54
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.48
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-44  Score=310.95  Aligned_cols=202  Identities=26%  Similarity=0.368  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcc
Q 025168           50 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSL  129 (257)
Q Consensus        50 ~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~  129 (257)
                      +.|++++||+|||+|+|++++++......+.   ..+...+++++|+.+++.+++++++||||+|||||+++++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~---~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCC---CcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            5789999999999999999987765544332   3456778999999999999999999999999999999999999999


Q ss_pred             cchhhHHhhhhhHHHHHHHHHHhhcCCcchhhc----------------CCCcccccCCCCccchhHHHHHHHHHHHHHH
Q 025168          130 TRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERL----------------GGGANVVAHGYTKGDGLGAEIIGTFVLVYTV  193 (257)
Q Consensus       130 ~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~i  193 (257)
                      .+.+.|+++|++|+++|+++.+.++++...+..                ....+.+.++.+..++|+.|+++||+|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876532211                1112334566788999999999999999999


Q ss_pred             HHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh----------CCCCCCCCCC
Q 025168          194 FSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF----------NKDHAWDDHV  257 (257)
Q Consensus       194 l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~----------~~~~~w~~~w  257 (257)
                      +.+.|++++...   +.+.|+.||+++...+++.+++||++||||||||||+++          .++++|+++|
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            999988775432   347899999999999999999999999999999999986          1257999998
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure