Citrus Sinensis ID: 025172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQEPQLPVITVSAAADCP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccEEEEEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEccHHHHHcccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVPVITFVIALpfgletvdikgisgkaKVVGTLVCIGGAMLLTlykgmplfdhsysQAETAINVmhmhptrkterwtFGTIALTVGTLlwaswfpiqsyigkrypckyssTAILSLFGAIQAAILCLATnrnhsawsfkGKIEIISVLYAGIVGSGLcyvgltwcvkkkgpvftaaFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEdikeqepqlpvitvsaaadcp
Flexible Loop (DISEMBL)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAedikeqepqlpvitvsaaadcp
Low Complexity Region (SEG)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQEPQLPVITVSAAADCP
Disordered region (IsUnstruct)
**PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCV*****************************
Disordered Region (DISOPRED)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYS******************RWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG**************************************
Disordered Region (DISEMBL)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQEPQLPVITVSAAADCP
Disordered Region (DISPRO)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHS********************RWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK***********************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKxxxxxxxxxxxxxxxxxxxxxEPQLPVITVSAAADCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9LI65	364	WAT1-related protein At3g	yes	no	0.914	0.642	0.466	4e-63
Q9M130	365	WAT1-related protein At4g	no	no	0.886	0.621	0.437	7e-53
Q5XEZ0	365	WAT1-related protein At1g	no	no	0.949	0.665	0.409	7e-48
Q9M131	365	WAT1-related protein At4g	no	no	0.992	0.695	0.389	2e-45
F4I8W6	337	WAT1-related protein At1g	no	no	0.863	0.655	0.4	2e-43
Q500Z4	352	WAT1-related protein At1g	no	no	0.921	0.670	0.369	5e-43
Q8GXB4	374	WAT1-related protein At1g	no	no	0.921	0.631	0.358	1e-39
Q9LV20	383	WAT1-related protein At3g	no	no	0.910	0.608	0.362	1e-39
Q9LPF1	370	WAT1-related protein At1g	no	no	0.925	0.640	0.36	3e-38
Q9M129	361	WAT1-related protein At4g	no	no	0.855	0.606	0.411	1e-37

>sp|Q9LI65|WTR24_ARATH WAT1-related protein At3g30340 OS=Arabidopsis thaliana GN=At3g30340 PE=2 SV=1

 Score =  241 bits (615), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 168/238 (70%), Gaps = 4/238 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVP +TF +AL F  ET++IK   G+AK++GT++CI GA++LTLYKG  L     +  ET
Sbjct: 110 MVPSVTFALALVFRQETLNIKSNVGRAKLLGTMICICGALVLTLYKGTALSREHSTHMET 169

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
                       T++W  G+I L +  ++W+SWF +Q+ I + YPC+Y+ST ILS FG I
Sbjct: 170 HTRTDSTGAM--TQKWAMGSIMLVISIIIWSSWFIVQAKISRVYPCQYTSTTILSFFGVI 227

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q+A+L L + R+ S W  K K +++++LY+GIVGSGLCYVG++WC++++G VFT++F PL
Sbjct: 228 QSALLSLISERSTSMWVVKDKFQVLALLYSGIVGSGLCYVGMSWCLRQRGAVFTSSFIPL 287

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIK 238
           +Q+ AA+F    LHE+++ GS++GS+ +I+GLYILLWGK+K+    V+K  QE  D+ 
Sbjct: 288 IQVFAAIFSFSFLHEQIYCGSVIGSMVIIVGLYILLWGKSKDKSASVTK--QEPLDLD 343

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  207 bits (526), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/231 (43%), Positives = 151/231 (65%), Gaps = 4/231 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           M P ITFV+AL F +E +++K  +G   V+G L+CIGGA+LLT+YKG+PL      +   
Sbjct: 109 MTPAITFVMALIFRVEKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQ 168

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
            IN  H     K E W  G + L  G+  + SW  IQ+ + ++YPC+YSST +LS FG I
Sbjct: 169 LINNNH---AMKPENWIIGCVLLFAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTI 225

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q A+L L  +R+ +AW    K++I++++YAG V  G+C VG +WC++K+GP+FT+ F+P+
Sbjct: 226 QCALLSLIKSRDITAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPV 285

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM-QNCVSKV 230
             I A +FD  +LH ++ +GS++GS  VI GLYI L GK + M + C  K+
Sbjct: 286 GLIFATLFDFLILHRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKEECEKKL 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XEZ0|WTR1_ARATH WAT1-related protein At1g01070 OS=Arabidopsis thaliana GN=At1g01070 PE=2 SV=1

 Score =  190 bits (483), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/254 (40%), Positives = 150/254 (59%), Gaps = 11/254 (4%)

Query: 1   MVPVITFVIALPFGLETVDI-KGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQA 58
           M+P ITF +AL F  E V I K  +G  KV+GTL+CI GA+ LT YKG  + + HS+S  
Sbjct: 115 MLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHG 174

Query: 59  ETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
             + N    +   K   W  G + LT+GT+L + W   Q  +  +YPCKYSST ++S+F 
Sbjct: 175 GASHN---NNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFA 231

Query: 119 AIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS 178
           A Q A+L L  +R+ + W    +  I  ++YAG+VG  +  V  TW +KK G VF +AF 
Sbjct: 232 AFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFF 291

Query: 179 PLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCV---SKVTQEAE 235
           PL  I A +FD  +LH  L++GS++GS+  I GLY+ LWGKNKE ++     S +  EA+
Sbjct: 292 PLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQ 351

Query: 236 DI---KEQEPQLPV 246
                K+ + + PV
Sbjct: 352 YTTPNKDNDSKSPV 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M131|WTR28_ARATH WAT1-related protein At4g01430 OS=Arabidopsis thaliana GN=At4g01430 PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 150/259 (57%), Gaps = 5/259 (1%)

Query: 1   MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQA 58
           M+P ITF +AL F +E   ++K  +G  KV+GTL+CI GAMLLT YKG  L + HS+ QA
Sbjct: 108 MLPAITFALALIFRIENAQNLKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQA 167

Query: 59  ETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLF 117
               N  + H   +T++W  G + L +GT+L + W   Q  +  +YP  KYSST ++S+F
Sbjct: 168 RHNNNNNNGHD--QTKKWLLGCLYLVIGTVLLSLWMLFQGKLSFKYPGNKYSSTCLMSVF 225

Query: 118 GAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177
            + Q AIL L  +R+   W  + K  I+  LYAGIVG  +  V  +W +K  G VF + F
Sbjct: 226 ASFQCAILSLYKSRDVKDWIIEDKFVILVTLYAGIVGQAMSTVVTSWSIKMTGAVFVSTF 285

Query: 178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
           SP+  + A +FD  +LH  L++GS+LGS+  I GLY+ LWG+  E    VSK    ++  
Sbjct: 286 SPVSLVAATLFDFLILHSPLYLGSILGSVVTITGLYVFLWGRKNETDQSVSKTLNSSQFS 345

Query: 238 KEQEPQLPVITVSAAADCP 256
           + ++ +   I      + P
Sbjct: 346 QNKDNEDHTIANHKDTNLP 364

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8W6|WTR4_ARATH WAT1-related protein At1g11460 OS=Arabidopsis thaliana GN=At1g11460 PE=3 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 4/225 (1%)

Query: 1   MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE 59
           ++P ITF  AL    E +  ++  +G  KV+GT++CI GA+ LT YKG P   +S+S  E
Sbjct: 115 LMPAITFAFALILRTEKIKSLRTQAGMIKVMGTIICISGALFLTFYKG-PHISNSHSHQE 173

Query: 60  TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
              +  + +    T+ W  G + LT+GT+L + W   Q  +  +YPCK+SST ++S+F A
Sbjct: 174 ALPH--NNNSDHNTKNWLLGCLYLTIGTVLISLWILFQGTLSIKYPCKFSSTCLMSIFAA 231

Query: 120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
            Q A+L L  +R+   W    +  I  ++YAG++G  +  V +TW VKK G VF +A  P
Sbjct: 232 FQCALLSLYKSRDVKDWIIDDRFVIGVIVYAGVIGQAMSTVSVTWGVKKLGAVFVSAIMP 291

Query: 180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224
           +  I A++FD  +LH  L++GSL+GS+  I GLY+ LWGKNK+M+
Sbjct: 292 IALISASLFDFIILHTPLYLGSLIGSVGTITGLYVFLWGKNKDME 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q500Z4|WTR3_ARATH WAT1-related protein At1g11450 OS=Arabidopsis thaliana GN=At1g11450 PE=2 SV=2

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 140/241 (58%), Gaps = 5/241 (2%)

Query: 1   MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE 59
           ++P ITF  AL    E + D+K  +G  KV+GTL+CI GA+ LT YKG P   +S+S  E
Sbjct: 115 LMPAITFAFALILRTEKIKDLKTQAGMIKVMGTLICISGALFLTFYKG-PHISNSHSHLE 173

Query: 60  TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
               + H +    T+ W  G + L +G +L + W   Q  +  +YPCK+SST ++S+F A
Sbjct: 174 A---LPHNNSDHNTKNWLLGCLYLVIGIVLLSLWILFQGTLSIKYPCKFSSTCLMSIFAA 230

Query: 120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
            Q A+L L  +R+   W       I  ++YAG++G  +  V  TW + + G VF +A  P
Sbjct: 231 FQCALLSLYKSRDLKHWIIDDGFVIGVIIYAGVIGQAMSTVAATWGINRLGAVFASAIMP 290

Query: 180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKE 239
           +  I A +FD  +LH  L++GS++GS+  IIGLY+ LWGKNKE +  ++ ++    +  +
Sbjct: 291 VSLISATLFDFLILHTPLYLGSVIGSVGTIIGLYVFLWGKNKETEADITTLSSRMNNEDQ 350

Query: 240 Q 240
           +
Sbjct: 351 R 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 149/265 (56%), Gaps = 29/265 (10%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           ++P +TF++A  F  ETV IK  SG+AKV+GTLVC+ GAM+L+ Y G     H+    E+
Sbjct: 107 LLPAVTFLLAAIFRQETVGIKKASGQAKVIGTLVCVIGAMVLSFYHG-----HTIGIGES 161

Query: 61  AI------NVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAIL 114
            I      N+     +     +  G   +    + WA+WF IQ+ + + +   Y+ST ++
Sbjct: 162 KIHWAYAENITKHGSSSGHSNFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLM 221

Query: 115 SLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFT 174
            L G+IQ   + L ++   S WS    +  IS LYAG+V S L +  ++W +++KGP++ 
Sbjct: 222 CLMGSIQCGAIALISDHTISDWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYV 281

Query: 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN------------KE 222
           + FSPL+ ++ A+F   LL E+L+ G+ +GS  V+IGLY +LWGK+             +
Sbjct: 282 SVFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVIGLYGVLWGKDREVSEKEEEREKVK 341

Query: 223 MQNCVSKVTQEA-EDIKEQEPQLPV 246
            QN   KV  E+ EDI   E +LPV
Sbjct: 342 QQN--HKVKSESNEDI---ESRLPV 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 137/240 (57%), Gaps = 7/240 (2%)

Query: 2   VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYS-QAET 60
           VP ITF++A    LE +D+    G AKV+GTLV IGGA ++TLY+G P+FD   + Q E 
Sbjct: 135 VPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEE 194

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
            +   + H        T G + L    L WA W  +Q+ + K+YP K + T+    FG I
Sbjct: 195 VVGSDNSHSL------TLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLI 248

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q  ++ L    + + W      E+ ++LYAGI+ SGL     TWC+ K GPVF A F PL
Sbjct: 249 QFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPL 308

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQ 240
             ++ A     +L ++L+ G ++G++ +++GLY++LWGKN+E +  + +  Q+ E + + 
Sbjct: 309 QTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEESQQDPESLTKH 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 145/250 (58%), Gaps = 13/250 (5%)

Query: 2   VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETA 61
           +P +TF++AL F LETV+ + +   AKVVGT++ +GGAM++TLYKG P  +      + A
Sbjct: 111 LPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKG-PAIE----IVKAA 165

Query: 62  INVMH--MHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
            N  H     T   + W  GTIA+      WA++F +QSY  K YP + S   ++   G 
Sbjct: 166 HNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGT 225

Query: 120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
           I  AI  L   R+ SAW        ++ +Y+G+V SG+ Y   +  +K++GPVFT +FSP
Sbjct: 226 ILNAIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSP 285

Query: 180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKE 239
           +  I+ A     +L E++H+GS++G++ +++GLY ++WGK+K+  N +       E I  
Sbjct: 286 MCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLD------EKIVA 339

Query: 240 QEPQLPVITV 249
           +  +LP+  V
Sbjct: 340 KSQELPITNV 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M129|WTR30_ARATH WAT1-related protein At4g01450 OS=Arabidopsis thaliana GN=At4g01450 PE=2 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 148/226 (65%), Gaps = 7/226 (3%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           ++P +TFV+AL FG E + +K   G   V+GTL+ + G +LLT+Y+G+PL +     A +
Sbjct: 109 IMPSLTFVMALIFGFEKLSLKTKIGYGVVLGTLISLVGGLLLTMYQGIPLTNSPEQAANS 168

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
             +  H       E W  G   L  G +L++SW  IQ+ I  +YPC YSST ILS+FG +
Sbjct: 169 NNHTGH-------ENWIKGCFFLLTGVVLFSSWMLIQAKINVKYPCPYSSTVILSVFGTL 221

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q A+L L   R+   W  + ++ II+V+ AG+V  G+C VG++WC+K++GPV +++FSP+
Sbjct: 222 QCALLSLIKTRHLEDWILRDELTIITVVIAGVVAQGMCTVGMSWCIKQQGPVVSSSFSPV 281

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNC 226
           V + A +FD  +LH  +++GS++GS+ V+IGLYI LW ++K++  C
Sbjct: 282 VLMSATVFDFLILHREIYLGSVIGSVVVVIGLYIFLWSRSKQIVEC 327

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255555839	369	Auxin-induced protein 5NG4, putative [Ri	0.996	0.691	0.677	2e-99
225426479	368	PREDICTED: auxin-induced protein 5NG4 [V	1.0	0.695	0.635	1e-93
297742491	748	unnamed protein product [Vitis vinifera]	1.0	0.342	0.635	9e-93
356555443	374	PREDICTED: auxin-induced protein 5NG4-li	0.929	0.636	0.643	2e-89
356546558	374	PREDICTED: auxin-induced protein 5NG4-li	0.929	0.636	0.643	3e-89
388490838	363	unknown [Medicago truncatula]	0.968	0.683	0.608	5e-88
356525300	351	PREDICTED: auxin-induced protein 5NG4-li	0.941	0.686	0.643	3e-87
358248972	357	uncharacterized protein LOC100791663 [Gl	0.953	0.683	0.636	4e-87
449456450	361	PREDICTED: auxin-induced protein 5NG4-li	0.933	0.662	0.637	7e-83
449515311	362	PREDICTED: auxin-induced protein 5NG4-li	0.933	0.660	0.637	8e-83

>gi|255555839|ref|XP_002518955.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223541942|gb|EEF43488.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 212/257 (82%), Gaps = 2/257 (0%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           +VPV+TF++ALPFG+E V+IK  SG+AKVVGTLVC+GGAMLLTLY+GMPLF H  S++  
Sbjct: 112 IVPVVTFIVALPFGMENVNIKSNSGRAKVVGTLVCVGGAMLLTLYRGMPLFSHPQSRSIH 171

Query: 61  AINVMHMHP--TRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
                 ++P  T++ ERWT G +AL VG LLW+SWF +QS + KR+P +YSSTAI++ FG
Sbjct: 172 QAIQHGINPNYTKRAERWTIGCVALIVGVLLWSSWFILQSNVSKRFPYQYSSTAIMTFFG 231

Query: 119 AIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS 178
           AIQ+A+LC +T RN S W  KGKIEI++VLYAG+VGSGLCYV ++WCVKK+GPVFT+AFS
Sbjct: 232 AIQSAVLCFSTERNLSIWILKGKIEILTVLYAGMVGSGLCYVAMSWCVKKRGPVFTSAFS 291

Query: 179 PLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIK 238
           PLVQIMAAM DIP+LHE LH+GSLLGSI VIIGLYILLWGKN+EMQN  +KV QEAE+IK
Sbjct: 292 PLVQIMAAMIDIPILHEELHLGSLLGSIIVIIGLYILLWGKNREMQNHATKVAQEAEEIK 351

Query: 239 EQEPQLPVITVSAAADC 255
           EQEPQ  VITV   A C
Sbjct: 352 EQEPQSQVITVPCDARC 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426479|ref|XP_002270961.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/258 (63%), Positives = 208/258 (80%), Gaps = 2/258 (0%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE- 59
           MVP ITF+++LPFGLE V+IK   G+AK++GTLVCI GAM+LTLYKGMPL  +S  +A  
Sbjct: 111 MVPAITFIMSLPFGLEIVNIKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPS 170

Query: 60  -TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
            T    + +   +KTERWT G+IAL  GTLLW+SWF IQS IGK YPC+YSSTAI+S FG
Sbjct: 171 PTMDQAISLSSGKKTERWTVGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFG 230

Query: 119 AIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS 178
           AIQ+A++ L+ +RN S W  KGK EI++V+YAG+VGSGLCYV ++WCVKK+GPVFTAAFS
Sbjct: 231 AIQSAVISLSMDRNLSLWILKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFS 290

Query: 179 PLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIK 238
           PLVQIMA MFDIP+LHE+LH+GS+LGS TVI GLYILLWGK K+ +N   ++ QEAE++K
Sbjct: 291 PLVQIMAVMFDIPILHEQLHLGSVLGSATVIAGLYILLWGKKKDAENSSMELVQEAEEVK 350

Query: 239 EQEPQLPVITVSAAADCP 256
           +QE QL V T+++ + CP
Sbjct: 351 DQEAQLQVTTITSGSRCP 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742491|emb|CBI34640.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 164/258 (63%), Positives = 208/258 (80%), Gaps = 2/258 (0%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE- 59
           MVP ITF+++LPFGLE V+IK   G+AK++GTLVCI GAM+LTLYKGMPL  +S  +A  
Sbjct: 491 MVPAITFIMSLPFGLEIVNIKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPS 550

Query: 60  -TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
            T    + +   +KTERWT G+IAL  GTLLW+SWF IQS IGK YPC+YSSTAI+S FG
Sbjct: 551 PTMDQAISLSSGKKTERWTVGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFG 610

Query: 119 AIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS 178
           AIQ+A++ L+ +RN S W  KGK EI++V+YAG+VGSGLCYV ++WCVKK+GPVFTAAFS
Sbjct: 611 AIQSAVISLSMDRNLSLWILKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFS 670

Query: 179 PLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIK 238
           PLVQIMA MFDIP+LHE+LH+GS+LGS TVI GLYILLWGK K+ +N   ++ QEAE++K
Sbjct: 671 PLVQIMAVMFDIPILHEQLHLGSVLGSATVIAGLYILLWGKKKDAENSSMELVQEAEEVK 730

Query: 239 EQEPQLPVITVSAAADCP 256
           +QE QL V T+++ + CP
Sbjct: 731 DQEAQLQVTTITSGSRCP 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555443|ref|XP_003546041.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/241 (64%), Positives = 203/241 (84%), Gaps = 3/241 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVPV+TF++ALPFGLETV IK  SG+AK++G+LVCIGGA++LTLYKG PLF+ S+ ++ +
Sbjct: 109 MVPVVTFMMALPFGLETVKIKSKSGRAKILGSLVCIGGALMLTLYKGKPLFNFSHYESVS 168

Query: 61  AI---NVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLF 117
            +   + +++  TR T +WT G IAL +GT+ W+SWF +QS I KRYPC+YSSTAI+S F
Sbjct: 169 PVAKSSEVNLASTRTTGKWTIGVIALALGTIFWSSWFILQSKISKRYPCQYSSTAIMSFF 228

Query: 118 GAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177
           GAIQ+A++C  T+ N S W  +GKI+II++LYAG++GSGLC+VG++WCVKK+GPVFTAAF
Sbjct: 229 GAIQSAVICFFTDHNLSIWVLQGKIQIIAILYAGMIGSGLCFVGMSWCVKKRGPVFTAAF 288

Query: 178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
           SPLVQIMAAM DIP+LHE+LH+GS++GSI VIIGLYILLWGK+ EMQN V K+ QEAE+ 
Sbjct: 289 SPLVQIMAAMIDIPVLHEQLHLGSVMGSILVIIGLYILLWGKSMEMQNRVVKLVQEAEET 348

Query: 238 K 238
           K
Sbjct: 349 K 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546558|ref|XP_003541692.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/241 (64%), Positives = 202/241 (83%), Gaps = 3/241 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVPV+TF++ALPFGLETV IK  SG+AK++G+LVCIGGA++LTLYKG PLF+ S+ ++ +
Sbjct: 109 MVPVVTFMMALPFGLETVKIKCKSGRAKILGSLVCIGGALMLTLYKGKPLFNFSHYESVS 168

Query: 61  AI---NVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLF 117
            +   + +++  TR   +WT G IAL +GT+ W+SWF +QS I KRYPC+YSSTAI+S F
Sbjct: 169 PVANSSAVNLASTRTKGKWTIGVIALVLGTIFWSSWFILQSKISKRYPCQYSSTAIMSFF 228

Query: 118 GAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177
           GAIQ+A++C  T+ N S W  KGKI+II++LYAG++GSGLC+VG++WCVKK+GPVFTAAF
Sbjct: 229 GAIQSAVICFFTDHNLSIWVLKGKIQIIAILYAGMIGSGLCFVGMSWCVKKRGPVFTAAF 288

Query: 178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
           SPLVQIMAAM DIP+LHE+LH+GS++GSI VIIGLYILLWGK+ EMQN V K+ QEAE+ 
Sbjct: 289 SPLVQIMAAMIDIPVLHEQLHLGSVMGSILVIIGLYILLWGKSMEMQNRVVKLVQEAEET 348

Query: 238 K 238
           K
Sbjct: 349 K 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490838|gb|AFK33485.1| unknown [Medicago truncatula]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 154/253 (60%), Positives = 206/253 (81%), Gaps = 5/253 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVPV+TF++ALPFG+ETV+IK  SG+AK+ GTLVCI GA++LTLYKG  LF+ S+ ++  
Sbjct: 108 MVPVVTFLLALPFGIETVNIKCNSGRAKIFGTLVCIVGALMLTLYKGKGLFNFSHHESS- 166

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
               + +  TR  E+WT G IAL +GTL W+SWF +QS I KRYPC+YSSTAI+S FGAI
Sbjct: 167 ----VKLAATRTPEKWTIGVIALILGTLFWSSWFILQSKISKRYPCQYSSTAIMSFFGAI 222

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q+A++CL  + + S W  +GKI+II++LYAGI GSGLC+VG++WCVKK+GPVFTAAFSP 
Sbjct: 223 QSAVICLFIDHDLSIWVLRGKIQIIAILYAGITGSGLCFVGMSWCVKKRGPVFTAAFSPF 282

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQ 240
           VQIMAA+ DIP+LHE+L++GS+LGSI V++GLYILLWGK+KEM+N +  + ++AE+ KEQ
Sbjct: 283 VQIMAALIDIPVLHEQLYLGSVLGSILVMLGLYILLWGKSKEMKNRLIMLAEKAEETKEQ 342

Query: 241 EPQLPVITVSAAA 253
           EPQ+  +TVS  +
Sbjct: 343 EPQIQHLTVSCES 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525300|ref|XP_003531263.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/247 (64%), Positives = 198/247 (80%), Gaps = 6/247 (2%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVPVITF++ALPFGLETV+IK   GKAK++GT VCIGGA+LLTLYKG PLFD S+ Q+  
Sbjct: 108 MVPVITFIMALPFGLETVNIKCKGGKAKILGTFVCIGGALLLTLYKGKPLFDGSHYQSAM 167

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
                    TR T++WT G IAL +GTL W+ WF +QS IGKRYPC+YSSTAI++ FGA+
Sbjct: 168 D---QASSTTRSTQKWTIGVIALIMGTLFWSFWFILQSKIGKRYPCQYSSTAIMTFFGAM 224

Query: 121 QAAILCLAT-NRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
           QAAIL  +T + N S+W  K KI+II+VLY+GIVGS +CYVG++WCVKK+GPVFTAAFSP
Sbjct: 225 QAAILGFSTGSSNLSSWVLKDKIQIITVLYSGIVGSSVCYVGMSWCVKKRGPVFTAAFSP 284

Query: 180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM--QNCVSKVTQEAEDI 237
           LVQIM+ M DIP LHE+LH+GS++GS+ V+IGLYILLWGK+K+M   N  +K  QE E+ 
Sbjct: 285 LVQIMSGMIDIPFLHEQLHLGSVVGSMLVMIGLYILLWGKSKDMMQNNGATKFAQEVEET 344

Query: 238 KEQEPQL 244
           KEQEPQ+
Sbjct: 345 KEQEPQV 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248972|ref|NP_001240227.1| uncharacterized protein LOC100791663 [Glycine max] gi|255635141|gb|ACU17927.1| unknown [Glycine max]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/250 (63%), Positives = 199/250 (79%), Gaps = 6/250 (2%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           MVPVITF++ALPFGLETV+IK   GKAK++GT VCIGGA+LLTLYKG  LFD S+ Q+  
Sbjct: 108 MVPVITFIMALPFGLETVNIKCKGGKAKILGTFVCIGGALLLTLYKGKALFDGSHHQSAV 167

Query: 61  AINVMHMHP---TRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLF 117
           A+          TR T++WT G IAL +GTL W+ WF +QS IGKRYPC+YSSTAI++ F
Sbjct: 168 AMRSAMDQASSTTRTTQKWTIGVIALIMGTLFWSFWFILQSKIGKRYPCQYSSTAIMTFF 227

Query: 118 GAIQAAILCLAT-NRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAA 176
           GA+QAAIL  +T + N S+W  K KI+II+VLY+GIVGS +CYVG++WCVKK+GPVFTAA
Sbjct: 228 GAMQAAILGFSTGSSNLSSWVLKDKIQIITVLYSGIVGSSVCYVGMSWCVKKRGPVFTAA 287

Query: 177 FSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM--QNCVSKVTQEA 234
           FSPLVQIM+ M DIP LHE+LH+GS++GS+ V+IGLYILLWGK+K+M   N  +K  QE 
Sbjct: 288 FSPLVQIMSGMIDIPFLHEQLHLGSVVGSMLVMIGLYILLWGKSKDMMQNNGATKFAQEV 347

Query: 235 EDIKEQEPQL 244
           E+ KEQEPQ+
Sbjct: 348 EETKEQEPQV 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456450|ref|XP_004145962.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/243 (63%), Positives = 189/243 (77%), Gaps = 4/243 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           +VPV+TF++ALPFGLE+V +K  SGKAKV+GT+VCI GA+LLT YKG  L + SY  A  
Sbjct: 113 IVPVVTFLLALPFGLESVKLKSSSGKAKVIGTVVCISGAVLLTTYKGPTLANASYVTA-- 170

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
             +V      +  E WT G IAL  GTLLW+SWF +QS IGKRYP +YSSTAI+S FGAI
Sbjct: 171 --HVSDAKLKKTAESWTVGCIALVAGTLLWSSWFLLQSNIGKRYPYQYSSTAIMSGFGAI 228

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q+A+L L+T    SAW+  GKI+I++VLY G++GSG+C+VG++WCVKK+GPVFTAAFSPL
Sbjct: 229 QSAVLSLSTGAKLSAWALTGKIQILTVLYTGMIGSGICFVGMSWCVKKRGPVFTAAFSPL 288

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQ 240
           VQIMAAMFDIP+LHE L +GSLLGSI VIIGLYILLWGKNKEM++C SKV  E E     
Sbjct: 289 VQIMAAMFDIPILHEPLFLGSLLGSIIVIIGLYILLWGKNKEMESCASKVVVEEEITSTI 348

Query: 241 EPQ 243
            P 
Sbjct: 349 TPH 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515311|ref|XP_004164693.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 155/243 (63%), Positives = 189/243 (77%), Gaps = 4/243 (1%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           +VPV+TF++ALPFGLE+V +K  SGKAKV+GT+VCI GA+LLT YKG  L + SY  A  
Sbjct: 113 IVPVVTFLLALPFGLESVKLKSSSGKAKVIGTVVCISGAVLLTTYKGPTLANASYVTA-- 170

Query: 61  AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
             +V      +  E WT G IAL  GTLLW+SWF +QS IGKRYP +YSSTAI+S FGAI
Sbjct: 171 --HVSDAKLKKTAESWTVGCIALVAGTLLWSSWFLLQSNIGKRYPYQYSSTAIMSGFGAI 228

Query: 121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
           Q+A+L L+T    SAW+  GKI+I++VLY G++GSG+C+VG++WCVKK+GPVFTAAFSPL
Sbjct: 229 QSAVLSLSTGAKLSAWALTGKIQILTVLYTGMIGSGICFVGMSWCVKKRGPVFTAAFSPL 288

Query: 181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKEQ 240
           VQIMAAMFDIP+LHE L +GSLLGSI VIIGLYILLWGKNKEM++C SKV  E E     
Sbjct: 289 VQIMAAMFDIPILHEPLFLGSLLGSIIVIIGLYILLWGKNKEMESCASKVVVEEEITSTI 348

Query: 241 EPQ 243
            P 
Sbjct: 349 TPH 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2102881	364	UMAMIT32 "Usually multiple aci	0.906	0.637	0.474	6.4e-60
TAIR|locus:2125172	365	UMAMIT31 "Usually multiple aci	0.929	0.652	0.427	2.1e-52
TAIR|locus:2116967	361	UMAMIT30 "Usually multiple aci	0.914	0.648	0.419	3.6e-50
TAIR|locus:2200990	365	UMAMIT28 "Usually multiple aci	0.867	0.608	0.431	6.9e-47
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.910	0.638	0.415	2.7e-45
TAIR|locus:2200041	337	UMAMIT26 "Usually multiple aci	0.863	0.655	0.4	3.1e-44
TAIR|locus:2200056	352	UMAMIT27 "Usually multiple aci	0.859	0.625	0.395	4.5e-43
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.921	0.631	0.369	4e-42
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.898	0.600	0.367	2e-40
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.902	0.624	0.359	2.9e-39

TAIR|locus:2102881 UMAMIT32 "Usually multiple acids move in and out Transporters 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 113/238 (47%), Positives = 172/238 (72%)

Query:     1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLF-DHSYSQAE 59
             MVP +TF +AL F  ET++IK   G+AK++GT++CI GA++LTLYKG  L  +HS +  E
Sbjct:   110 MVPSVTFALALVFRQETLNIKSNVGRAKLLGTMICICGALVLTLYKGTALSREHS-THME 168

Query:    60 TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
             T  +         T++W  G+I L +  ++W+SWF +Q+ I + YPC+Y+ST ILS FG 
Sbjct:   169 T--HTRTDSTGAMTQKWAMGSIMLVISIIIWSSWFIVQAKISRVYPCQYTSTTILSFFGV 226

Query:   120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
             IQ+A+L L + R+ S W  K K +++++LY+GIVGSGLCYVG++WC++++G VFT++F P
Sbjct:   227 IQSALLSLISERSTSMWVVKDKFQVLALLYSGIVGSGLCYVGMSWCLRQRGAVFTSSFIP 286

Query:   180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
             L+Q+ AA+F    LHE+++ GS++GS+ +I+GLYILLWGK+K+    V+K  QE  D+
Sbjct:   287 LIQVFAAIFSFSFLHEQIYCGSVIGSMVIIVGLYILLWGKSKDKSASVTK--QEPLDL 342

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2125172 UMAMIT31 "Usually multiple acids move in and out Transporters 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/243 (42%), Positives = 158/243 (65%)

Query:     1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
             M P ITFV+AL F +E +++K  +G   V+G L+CIGGA+LLT+YKG+PL      +   
Sbjct:   109 MTPAITFVMALIFRVEKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQ 168

Query:    61 AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
              IN  H     K E W  G + L  G+  + SW  IQ+ + ++YPC+YSST +LS FG I
Sbjct:   169 LINNNH---AMKPENWIIGCVLLFAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTI 225

Query:   121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
             Q A+L L  +R+ +AW    K++I++++YAG V  G+C VG +WC++K+GP+FT+ F+P+
Sbjct:   226 QCALLSLIKSRDITAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPV 285

Query:   181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM-QNCVSKVT-QEAEDIK 238
               I A +FD  +LH ++ +GS++GS  VI GLYI L GK + M + C  K+  +  ED +
Sbjct:   286 GLIFATLFDFLILHRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQ 345

Query:   239 EQE 241
             E++
Sbjct:   346 EED 348

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2116967 UMAMIT30 "Usually multiple acids move in and out Transporters 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 102/243 (41%), Positives = 160/243 (65%)

Query:     1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
             ++P +TFV+AL FG E + +K   G   V+GTL+ + G +LLT+Y+G+PL  +S  QA  
Sbjct:   109 IMPSLTFVMALIFGFEKLSLKTKIGYGVVLGTLISLVGGLLLTMYQGIPL-TNSPEQAAN 167

Query:    61 AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
             + N    H     E W  G   L  G +L++SW  IQ+ I  +YPC YSST ILS+FG +
Sbjct:   168 SNN----HTGH--ENWIKGCFFLLTGVVLFSSWMLIQAKINVKYPCPYSSTVILSVFGTL 221

Query:   121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
             Q A+L L   R+   W  + ++ II+V+ AG+V  G+C VG++WC+K++GPV +++FSP+
Sbjct:   222 QCALLSLIKTRHLEDWILRDELTIITVVIAGVVAQGMCTVGMSWCIKQQGPVVSSSFSPV 281

Query:   181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNC-VSKV-TQEAEDIK 238
             V + A +FD  +LH  +++GS++GS+ V+IGLYI LW ++K++  C + K+ T   E+ K
Sbjct:   282 VLMSATVFDFLILHREIYLGSVIGSVVVVIGLYIFLWSRSKQIVECKIMKLPTNTVEEEK 341

Query:   239 EQE 241
             E+E
Sbjct:   342 EEE 344

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2200990 UMAMIT28 "Usually multiple acids move in and out Transporters 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 98/227 (43%), Positives = 139/227 (61%)

Query:     1 MVPVITFVIALPFGLETVDI-KGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQA 58
             M+P ITF +AL F  E V I K  +G  KV+GTL+CI GA+ LT YKG  + + HS+S  
Sbjct:   115 MLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHG 174

Query:    59 ETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
               + N    +   K   W  G + LT+GT+L + W   Q  +  +YPCKYSST ++S+F 
Sbjct:   175 GASHN---NNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFA 231

Query:   119 AIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS 178
             A Q A+L L  +R+ + W    +  I  ++YAG+VG  +  V  TW +KK G VF +AF 
Sbjct:   232 AFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFF 291

Query:   179 PLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN 225
             PL  I A +FD  +LH  L++GS++GS+  I GLY+ LWGKNKE ++
Sbjct:   292 PLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETES 338

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 99/238 (41%), Positives = 143/238 (60%)

Query:     1 MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQA 58
             M+P ITF +AL F +E   ++K  +G  KV+GTL+CI GAMLLT YKG  L + HS+ QA
Sbjct:   108 MLPAITFALALIFRIENAQNLKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQA 167

Query:    59 ETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPC-KYSSTAILSLF 117
                 N  + H   +T++W  G + L +GT+L + W   Q  +  +YP  KYSST ++S+F
Sbjct:   168 RHNNNNNNGHD--QTKKWLLGCLYLVIGTVLLSLWMLFQGKLSFKYPGNKYSSTCLMSVF 225

Query:   118 GAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177
              + Q AIL L  +R+   W  + K  I+  LYAGIVG  +  V  +W +K  G VF + F
Sbjct:   226 ASFQCAILSLYKSRDVKDWIIEDKFVILVTLYAGIVGQAMSTVVTSWSIKMTGAVFVSTF 285

Query:   178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAE 235
             SP+  + A +FD  +LH  L++GS+LGS+  I GLY+ LWG+  E    VSK    ++
Sbjct:   286 SPVSLVAATLFDFLILHSPLYLGSILGSVVTITGLYVFLWGRKNETDQSVSKTLNSSQ 343

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2200041 UMAMIT26 "Usually multiple acids move in and out Transporters 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 90/225 (40%), Positives = 138/225 (61%)

Query:     1 MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE 59
             ++P ITF  AL    E +  ++  +G  KV+GT++CI GA+ LT YKG P   +S+S  E
Sbjct:   115 LMPAITFAFALILRTEKIKSLRTQAGMIKVMGTIICISGALFLTFYKG-PHISNSHSHQE 173

Query:    60 TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
                +  + +    T+ W  G + LT+GT+L + W   Q  +  +YPCK+SST ++S+F A
Sbjct:   174 ALPH--NNNSDHNTKNWLLGCLYLTIGTVLISLWILFQGTLSIKYPCKFSSTCLMSIFAA 231

Query:   120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
              Q A+L L  +R+   W    +  I  ++YAG++G  +  V +TW VKK G VF +A  P
Sbjct:   232 FQCALLSLYKSRDVKDWIIDDRFVIGVIVYAGVIGQAMSTVSVTWGVKKLGAVFVSAIMP 291

Query:   180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224
             +  I A++FD  +LH  L++GSL+GS+  I GLY+ LWGKNK+M+
Sbjct:   292 IALISASLFDFIILHTPLYLGSLIGSVGTITGLYVFLWGKNKDME 336

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2200056 UMAMIT27 "Usually multiple acids move in and out Transporters 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 89/225 (39%), Positives = 133/225 (59%)

Query:     1 MVPVITFVIALPFGLETV-DIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAE 59
             ++P ITF  AL    E + D+K  +G  KV+GTL+CI GA+ LT YKG P   +S+S  E
Sbjct:   115 LMPAITFAFALILRTEKIKDLKTQAGMIKVMGTLICISGALFLTFYKG-PHISNSHSHLE 173

Query:    60 TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
                 + H +    T+ W  G + L +G +L + W   Q  +  +YPCK+SST ++S+F A
Sbjct:   174 A---LPHNNSDHNTKNWLLGCLYLVIGIVLLSLWILFQGTLSIKYPCKFSSTCLMSIFAA 230

Query:   120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
              Q A+L L  +R+   W       I  ++YAG++G  +  V  TW + + G VF +A  P
Sbjct:   231 FQCALLSLYKSRDLKHWIIDDGFVIGVIIYAGVIGQAMSTVAATWGINRLGAVFASAIMP 290

Query:   180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224
             +  I A +FD  +LH  L++GS++GS+  IIGLY+ LWGKNKE +
Sbjct:   291 VSLISATLFDFLILHTPLYLGSVIGSVGTIIGLYVFLWGKNKETE 335

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 89/241 (36%), Positives = 144/241 (59%)

Query:     1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPL-FDHSYSQAE 59
             ++P +TF++A  F  ETV IK  SG+AKV+GTLVC+ GAM+L+ Y G  +    S     
Sbjct:   107 LLPAVTFLLAAIFRQETVGIKKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWA 166

Query:    60 TAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
              A N+     +     +  G   +    + WA+WF IQ+ + + +   Y+ST ++ L G+
Sbjct:   167 YAENITKHGSSSGHSNFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGS 226

Query:   120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
             IQ   + L ++   S WS    +  IS LYAG+V S L +  ++W +++KGP++ + FSP
Sbjct:   227 IQCGAIALISDHTISDWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSP 286

Query:   180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDIKE 239
             L+ ++ A+F   LL E+L+ G+ +GS  V+IGLY +LWGK++E    VS+  +E E +K+
Sbjct:   287 LLLVVVAIFSWALLEEKLYTGTFMGSALVVIGLYGVLWGKDRE----VSEKEEEREKVKQ 342

Query:   240 Q 240
             Q
Sbjct:   343 Q 343

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 87/237 (36%), Positives = 136/237 (57%)

Query:     2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYS-QAET 60
             VP ITF++A    LE +D+    G AKV+GTLV IGGA ++TLY+G P+FD   + Q E 
Sbjct:   135 VPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEE 194

Query:    61 AINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAI 120
              +   + H        T G + L    L WA W  +Q+ + K+YP K + T+    FG I
Sbjct:   195 VVGSDNSHSL------TLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLI 248

Query:   121 QAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPL 180
             Q  ++ L    + + W      E+ ++LYAGI+ SGL     TWC+ K GPVF A F PL
Sbjct:   249 QFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPL 308

Query:   181 VQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
               ++ A     +L ++L+ G ++G++ +++GLY++LWGKN+E +  + +  Q+ E +
Sbjct:   309 QTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEESQQDPESL 365

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 86/239 (35%), Positives = 144/239 (60%)

Query:     2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETA 61
             +P +TF++AL F LETV+ + +   AKVVGT++ +GGAM++TLYKG P  +      + A
Sbjct:   111 LPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKG-PAIEI----VKAA 165

Query:    62 INVMH--MHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGA 119
              N  H     T   + W  GTIA+      WA++F +QSY  K YP + S   ++   G 
Sbjct:   166 HNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGT 225

Query:   120 IQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSP 179
             I  AI  L   R+ SAW        ++ +Y+G+V SG+ Y   +  +K++GPVFT +FSP
Sbjct:   226 ILNAIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSP 285

Query:   180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVS-KVTQEAEDI 237
             +  I+ A     +L E++H+GS++G++ +++GLY ++WGK+K+  N +  K+  +++++
Sbjct:   286 MCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQEL 344

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000454001 SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-26
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-09
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  104 bits (260), Expect = 3e-26
 Identities = 67/247 (27%), Positives = 131/247 (53%), Gaps = 12/247 (4%)

Query: 1   MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAET 60
           + P +TF++A+ F +E V  K  S  AKV+GT++ + GA+++  Y G  +F    + +  
Sbjct: 113 ITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVF---VASSPP 169

Query: 61  AINVMHMHP--TRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFG 118
            +N   + P  +     W  G   LT+  +  +  F +Q++I   YP  ++ + + ++  
Sbjct: 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCV 229

Query: 119 AIQAAILCLATNRNH-SAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177
           +I  +++ L   +N+ S W     I +I+++   I+ S + YV  +W V+ KGP++ A F
Sbjct: 230 SIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYLAIF 288

Query: 178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNCVSKVTQEAEDI 237
            PL  ++A +     L++ L++G L+G I + +G Y ++WGK  E ++ +   +      
Sbjct: 289 KPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSG----- 343

Query: 238 KEQEPQL 244
           KE+ P L
Sbjct: 344 KEKTPLL 350

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 88  LLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISV 147
           L WA +F     + +R     + TA   L   I   +L     +  +  S K    I+++
Sbjct: 1   LSWALYFVFSKKLLERIS-PLTFTAYRFLIAGILLILLLFLLRKPFALLSLKA---ILAL 56

Query: 148 LYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSIT 207
           LY G+ G+ L Y+   + +K       +  + L  +   +  + LL E+L +  LLG + 
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 208 VIIGLYILLW 217
           +++G+ ++L 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 78  FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS 137
            G +      LLWA +  +   + +  P   +   +L L  A+   +L   +       S
Sbjct: 154 LGLLLALAAALLWALYTALVKRLSRLGP--VTLALLLQLLLALLLLLLFFLSGFGAPILS 211

Query: 138 FKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERL 197
                  + +LY G+  +GL Y+   + ++  G    A  S L  + AA+  + LL E L
Sbjct: 212 R----AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPL 267

Query: 198 HIGSLLGSITVIIGLYILLWGKNKE 222
               LLG+  V++G+ +      + 
Sbjct: 268 SPAQLLGAALVVLGVLLASLRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.9
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.88
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.86
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.84
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.82
PRK15430	296	putative chloramphenical resistance permease RarD;	99.81
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.76
KOG2765	416	consensus Predicted membrane protein [Function unk	99.72
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.72
COG2510	140	Predicted membrane protein [Function unknown]	99.7
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.63
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.61
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.6
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.6
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.59
COG2962	293	RarD Predicted permeases [General function predict	99.58
KOG2766	336	consensus Predicted membrane protein [Function unk	99.45
KOG1580	337	consensus UDP-galactose transporter related protei	99.44
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.38
PRK15430	296	putative chloramphenical resistance permease RarD;	99.35
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.31
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.28
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.25
PLN00411	358	nodulin MtN21 family protein; Provisional	99.19
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.16
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.09
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.08
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.07
PRK11272	292	putative DMT superfamily transporter inner membran	99.05
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.05
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.04
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.01
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.0
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.99
KOG1581	327	consensus UDP-galactose transporter related protei	98.98
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.94
PRK11689	295	aromatic amino acid exporter; Provisional	98.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.84
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.8
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.79
KOG1582	367	consensus UDP-galactose transporter related protei	98.71
COG2962	293	RarD Predicted permeases [General function predict	98.69
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.67
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.65
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.6
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.53
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.46
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.39
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.36
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.33
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.31
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.28
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.1
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.08
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.08
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.08
PRK11431	105	multidrug efflux system protein; Provisional	98.07
COG2076	106	EmrE Membrane transporters of cations and cationic	98.06
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.02
PRK13499	345	rhamnose-proton symporter; Provisional	97.9
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.84
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.71
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.63
PRK13499	345	rhamnose-proton symporter; Provisional	97.44
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.26
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.17
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.99
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.88
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.77
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.75
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.66
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.62
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.45
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.97
KOG1580	337	consensus UDP-galactose transporter related protei	95.81
KOG2765	416	consensus Predicted membrane protein [Function unk	95.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.45
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.71
PRK02237	109	hypothetical protein; Provisional	94.3
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	94.14
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.72
KOG1443	349	consensus Predicted integral membrane protein [Fun	92.96
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	92.82
KOG1581	327	consensus UDP-galactose transporter related protei	92.57
KOG2766	336	consensus Predicted membrane protein [Function unk	92.24
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	91.28
KOG3912	372	consensus Predicted integral membrane protein [Gen	89.33
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	88.81
PRK09541	110	emrE multidrug efflux protein; Reviewed	88.37
COG1742	109	Uncharacterized conserved protein [Function unknow	87.98
PRK10650	109	multidrug efflux system protein MdtI; Provisional	87.55
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	87.33
PRK11431	105	multidrug efflux system protein; Provisional	87.27
COG2076	106	EmrE Membrane transporters of cations and cationic	86.31
COG0387	368	ChaA Ca2+/H+ antiporter [Inorganic ion transport a	84.25
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	84.01
KOG4831	125	consensus Unnamed protein [Function unknown]	82.03
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	81.81
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	81.62

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=211.11  Aligned_cols=214  Identities=28%  Similarity=0.594  Sum_probs=158.0

Q ss_pred             CchHHHHHHHHHhh------cccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhh-hcccCC-CCC
Q 025172            1 MVPVITFVIALPFG------LETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAIN-VMHMHP-TRK   72 (256)
Q Consensus         1 ~~P~~~~l~~~~~~------~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~   72 (256)
                      +.|+++++++++++      +||++++      |++|++++++|+.++...+++....++   +++..+ ....++ ...
T Consensus       113 ~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~  183 (358)
T PLN00411        113 ITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVAS---SPPYLNFRQLSPPLSSS  183 (358)
T ss_pred             hhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccccccc---ccccccccccccccCCC
Confidence            47999999999994      6666666      699999999999987644433110000   000000 000000 112


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHH
Q 025172           73 TERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAG  151 (256)
Q Consensus        73 ~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g  151 (256)
                      ..++..|+++++.++++||+|.+++|+..+++++....+++++.++++...+.....++. ...+..........++|.+
T Consensus       184 ~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~  263 (358)
T PLN00411        184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMA  263 (358)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHH
Confidence            234567999999999999999999999988887766777888888877776666655432 2223221222345577888


Q ss_pred             HHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172          152 IVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ  224 (256)
Q Consensus       152 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~  224 (256)
                      ++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++..+.++||.+
T Consensus       264 i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        264 II-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             HH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            75 5689999999999999999999999999999999999999999999999999999999999887665543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=9.7e-24  Score=183.04  Aligned_cols=191  Identities=19%  Similarity=0.176  Sum_probs=150.9

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++.+++++++|||++.++      +++++++++|+.++.. .+.                     + ..+....|+
T Consensus        95 ~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~---------------------~-~~~~~~~G~  145 (299)
T PRK11453         95 AQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSL---------------------N-GQHVAMLGF  145 (299)
T ss_pred             hHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccC---------------------C-CcchhHHHH
Confidence            4699999999999999999996      9999999999998862 111                     1 112224799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHhcCCC---CcccccchhHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPC--KYSSTAILSLFGAIQAAILCLATNRNH---SAWSFKGKIEIISVLYAGIVGS  155 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~g~~~~  155 (256)
                      ++++.++++|+.|.++.|+..++.++  ......+.+..+.+.........+...   ..+...+...|..++|.|++++
T Consensus       146 ~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t  225 (299)
T PRK11453        146 MLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVAT  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998765432  233445555555554444443333211   0111123456999999999999


Q ss_pred             HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      +++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+++..+.++
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999999999999998877654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.90  E-value=5e-23  Score=178.23  Aligned_cols=191  Identities=15%  Similarity=0.161  Sum_probs=142.6

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++.+++++++|||+++++      ++|++++++|+.++.. .+.....    +.  .        ..+..+...|+
T Consensus       100 ~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~~~----~~--~--------~~~~~~~~~G~  158 (295)
T PRK11689        100 LWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGLSL----AE--L--------INNIASNPLSY  158 (295)
T ss_pred             HhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccchh----hh--h--------hhccccChHHH
Confidence            3699999999999999999995      9999999999999863 2110000    00  0        00011223699


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      +++++++++||.|.++.|+..++. ++....   ...+++.+.+.....+..  ... .+...|..+++.++ +++++|.
T Consensus       159 ~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~l~~~~~-~t~~~~~  230 (295)
T PRK11689        159 GLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQP--AMV-FSLPAIIKLLLAAA-AMGFGYA  230 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCc--ccc-CCHHHHHHHHHHHH-HHHHHHH
Confidence            999999999999999999987765 445432   223333333333332211  111 13345777778775 7899999


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      +|++++++.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++....++
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            999999999999999999999999999999999999999999999999999988865443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=177.13  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=151.3

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++ +|||+++++      ++|++++++|+.++.. ++.                        .+....|+
T Consensus       105 ~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~------------------------~~~~~~G~  152 (292)
T PRK11272        105 TVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGN------------------------LSGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Ccc------------------------cccchHHH
Confidence            479999999986 699999996      9999999999988752 111                        01123799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      ++.++++++||.|.+..|+..++  ++...+.+++..+++.+.+.....+....  ...+...|..+++.++++++++|.
T Consensus       153 l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~  228 (292)
T PRK11272        153 ILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAIS  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987654  23556778888888877777654432211  112345688899999999999999


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      +|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus       229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999988866544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.89  E-value=3.6e-22  Score=169.47  Aligned_cols=177  Identities=17%  Similarity=0.196  Sum_probs=148.5

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      ++|++++++|++++.. ++.                        .+....|+
T Consensus        82 ~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~------------------------~~~~~~G~  130 (260)
T TIGR00950        82 LAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN------------------------LSINPAGL  130 (260)
T ss_pred             hhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc------------------------ccccHHHH
Confidence            4799999999999999999995      9999999999998752 211                        11234899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      +++++++++|+.+.++.|+..++.+ +......+++.++++++.+.....++..   .. +...|..+++.+++++.++|
T Consensus       131 ~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       131 LLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP---QA-LSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC---Cc-chHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887653 2344555778888888877776544321   11 34567788999999999999


Q ss_pred             HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Q 025172          160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGL  212 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi  212 (256)
                      .+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.88  E-value=3.2e-22  Score=173.77  Aligned_cols=188  Identities=12%  Similarity=0.061  Sum_probs=145.2

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      +.+++++++|+.+..  .+                        +.+....|+
T Consensus       100 ~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~------------------------~~~~~~~G~  147 (302)
T TIGR00817       100 MEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DT------------------------ELSFNWAGF  147 (302)
T ss_pred             cchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CC------------------------cccccHHHH
Confidence            4799999999999999999995      999999999997653  11                        111224799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc---ccc-----cchhHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGK--RYPCKYSSTAILSLFGAIQAAILCLATNRNHSA---WSF-----KGKIEIISVLYA  150 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-----~~~~~~~~ll~~  150 (256)
                      ++.++++++|+.|.++.|+..+  ++ ++...+.+++..+++.+.+.....+.....   +..     .....+...++.
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVA  226 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHH
Confidence            9999999999999999999887  55 678999999999999988888765531100   000     000112112233


Q ss_pred             HHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          151 GIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       151 g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +..+....+.++++++++.+|++++++.+++|++++++|++++||+++..+++|+++++.|++++.+.|++
T Consensus       227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            33233333345668999999999999999999999999999999999999999999999999999876543

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.86  E-value=1.2e-20  Score=163.94  Aligned_cols=198  Identities=17%  Similarity=0.203  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172            3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA   82 (256)
Q Consensus         3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll   82 (256)
                      =+++++++++++|+|+++.+      ++|+++++.|+.+++..|....+.                 +.+..+...|+++
T Consensus       116 i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~~~-----------------~~~~~~~i~GDll  172 (334)
T PF06027_consen  116 IPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSGSD-----------------SSSGSNPILGDLL  172 (334)
T ss_pred             hHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccccccc-----------------CCCCCccchhHHH
Confidence            36899999999999999995      999999999999987654322110                 2234456799999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172           83 LTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAGIVGSGLCYVG  161 (256)
Q Consensus        83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  161 (256)
                      +++|+++||+++++.++..++. +...+..+..+++.++..+...+.+.. .....  .......++....++.+.-|.+
T Consensus       173 ~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l  249 (334)
T PF06027_consen  173 ALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSL  249 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986 668888888999999988887776653 22221  2223333443344477788888


Q ss_pred             HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccccc
Q 025172          162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNC  226 (256)
Q Consensus       162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~~  226 (256)
                      ....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|++++...+++++++.
T Consensus       250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~  314 (334)
T PF06027_consen  250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR  314 (334)
T ss_pred             HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence            89999999999999999999999999999999999999999999999999999988776554433

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.85  E-value=2.9e-20  Score=160.87  Aligned_cols=179  Identities=14%  Similarity=0.023  Sum_probs=136.0

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      .|+++++++    +|++..        ..++.++++|+.++.. .+.                     + .......|++
T Consensus       107 ~Pi~~~ll~----~~~~~~--------~~~~~i~~~Gv~li~~-~~~---------------------~-~~~~~~~G~l  151 (293)
T PRK10532        107 GPLAVALFS----SRRPVD--------FVWVVLAVLGLWFLLP-LGQ---------------------D-VSHVDLTGAA  151 (293)
T ss_pred             HHHHHHHHh----cCChHH--------HHHHHHHHHHHheeee-cCC---------------------C-cccCChHHHH
Confidence            588887765    344332        4556788999988752 111                     1 0112247999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVG  161 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  161 (256)
                      +.++++++||.|.+..|+..++. ++... .+...++++.+.+.....+.. ..   .+...|..+++.|+++++++|.+
T Consensus       152 l~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        152 LALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-AL---WHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-cc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998775 44544 455666666666655543321 11   12234666789999999999999


Q ss_pred             HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      |++++++.++++++++.+++|+++.+++++++||+++..+++|+++|++|++...+..+|
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999888765544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.84  E-value=1.8e-20  Score=161.16  Aligned_cols=180  Identities=18%  Similarity=0.143  Sum_probs=134.0

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      ++|+++++.|+.++.. ++.                     .   .....|+
T Consensus        98 ~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~~---------------------~---~~~~~g~  146 (281)
T TIGR03340        98 SSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SRF---------------------A---QHRRKAY  146 (281)
T ss_pred             hhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-ccc---------------------c---ccchhHH
Confidence            3699999999999999999996      9999999999998752 111                     0   1112688


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchh---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKY---SSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      .++++++++|++|.+..|+..++.++..   ....+.+...++.+.......+..  ... .....+..+++.+.+++++
T Consensus       147 ~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       147 AWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGG  223 (281)
T ss_pred             HHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHH
Confidence            8999999999999999887654432211   122223322222222222211211  111 1223455667888889999


Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhh
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYI  214 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l  214 (256)
                      +|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+++
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.82  E-value=1.4e-19  Score=160.10  Aligned_cols=185  Identities=16%  Similarity=0.175  Sum_probs=146.6

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      ++++++++.|+++... .+                         .+....|+
T Consensus       149 ~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~~-------------------------~~~~~~G~  196 (350)
T PTZ00343        149 AEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-KE-------------------------LHFTWLAF  196 (350)
T ss_pred             hhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-cc-------------------------chhHHHHH
Confidence            4799999999999999999995      9999999999999862 11                         11234799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCC------chhHHHHHHHHHHHHHHHHHHHHhcCCC--Cccc----ccchhHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYP------CKYSSTAILSLFGAIQAAILCLATNRNH--SAWS----FKGKIEIISVL  148 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~ll  148 (256)
                      +++++++++|+.+.++.|+..++..      ++.....+....+++++++.....+...  ..+.    ......+..++
T Consensus       197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l  276 (350)
T PTZ00343        197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIII  276 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHH
Confidence            9999999999999999999876531      3455666668889988888877554310  0000    00011122334


Q ss_pred             HHHHHHHHHHHHHHHH----HHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          149 YAGIVGSGLCYVGLTW----CVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       149 ~~g~~~~~~~~~~~~~----a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      + .++.+++.|.+|+.    ++++++|.+.++..+++|+++++++++++||+++..+++|+++++.|++++.+.
T Consensus       277 ~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        277 F-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            4 45577899999995    999999999999999999999999999999999999999999999999998765

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.81  E-value=1.4e-19  Score=156.73  Aligned_cols=177  Identities=12%  Similarity=0.076  Sum_probs=128.3

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      ++|++++++|+.++.. ..                      + . .     .
T Consensus       108 ~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~-~~----------------------~-~-~-----~  151 (296)
T PRK15430        108 INPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLW-TF----------------------G-S-L-----P  151 (296)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHH-Hc----------------------C-C-c-----c
Confidence            4799999999999999999996      9999999999998751 11                      0 0 0     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      +++++++++||.|.+..|+..++. .+....+.+.+..+.......   .......+.......+..+++.|+ .+.++|
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~  227 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPL  227 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHHHHHHHH-HHHHHH
Confidence            468889999999999998875421 122333344444443332211   111111111111112334444555 688999


Q ss_pred             HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172          160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      .+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+.+...
T Consensus       228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888777654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.76  E-value=3.2e-17  Score=140.44  Aligned_cols=182  Identities=22%  Similarity=0.344  Sum_probs=141.6

Q ss_pred             CchHHHHHHHH-HhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHH
Q 025172            1 MVPVITFVIAL-PFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFG   79 (256)
Q Consensus         1 ~~P~~~~l~~~-~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G   79 (256)
                      +.|+++.++++ ++++||+++++      +.++++++.|++++...+..                      .... ...|
T Consensus       105 ~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~----------------------~~~~-~~~g  155 (292)
T COG0697         105 LLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGG----------------------GGIL-SLLG  155 (292)
T ss_pred             HHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCc----------------------chhH-HHHH
Confidence            36999999997 66799999995      99999999999998731111                      0000 4589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172           80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTA-ILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  158 (256)
                      +++.+.++++|+.+.+..|+.. +. ++..... +... +.............+    .......+..+.+.|+++++++
T Consensus       156 ~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~i~  228 (292)
T COG0697         156 LLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL-LALLLLLLFFLSGFG----APILSRAWLLLLYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH-HHHHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887 43 4344444 3333 222222222221111    1123346888899999999999


Q ss_pred             HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      +.+|++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999988766

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.72  E-value=9.6e-17  Score=137.56  Aligned_cols=196  Identities=14%  Similarity=0.184  Sum_probs=158.0

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      +.+||.+++.++..||+++.      |++++++++.|+++++.++..+.+                  +....+...|++
T Consensus       195 Ss~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~~------------------~~~a~~~llG~l  250 (416)
T KOG2765|consen  195 SSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQNS------------------DLPASRPLLGNL  250 (416)
T ss_pred             chHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccccc------------------cCCccchhHHHH
Confidence            56899999999999999999      799999999999999865543211                  223345579999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchhH---HHHHHHHHHHHHHHHHHHHhcC-CCCcccccchhHHHHHHHHHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRYPCKYS---STAILSLFGAIQAAILCLATNR-NHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      ++++|++.||.|.++.|+...+......   +-.+..++..+++++..++... ..+.+.+++..+...+++.+++++++
T Consensus       251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvv  330 (416)
T KOG2765|consen  251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVV  330 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHH
Confidence            9999999999999999987765422233   3344444555666655544332 22345555666788888899999999


Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +-++|.+|.-..+|..+++-+.++...+++.+.++-+.++++.+++|.+.|++|.++.++..+.
T Consensus       331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999876543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.72  E-value=5.2e-18  Score=139.25  Aligned_cols=197  Identities=20%  Similarity=0.180  Sum_probs=155.3

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      ++|+||.+++|.++||+.+...      .++..+.+.|+++++  .++.+..     .+++..+     ++..+....|.
T Consensus       132 ssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv--RPpFlFG-----~~t~g~~-----~s~~~~~~~gt  193 (346)
T KOG4510|consen  132 SSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV--RPPFLFG-----DTTEGED-----SSQVEYDIPGT  193 (346)
T ss_pred             cChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe--cCCcccC-----CCccccc-----cccccccCCch
Confidence            4799999999999999999997      999999999999997  4444332     1111110     11123344788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      ..++.+++..|...++.|++.|+. +.+..+.|..+++++..++.....+. . +++ +...+|+.++.+|+ .+++++.
T Consensus       194 ~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig~-~-~lP-~cgkdr~l~~~lGv-fgfigQI  268 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIGA-V-QLP-HCGKDRWLFVNLGV-FGFIGQI  268 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhccc-e-ecC-ccccceEEEEEehh-hhhHHHH
Confidence            889999999999999999998885 65666777778888877777655542 1 222 24567888888898 5679999


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      +.+.++|+=.+..++++.+.+.+++.++.+++|||.+++++|+|+++++.+.+....+|.
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988776655443

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.70  E-value=5.3e-16  Score=113.90  Aligned_cols=136  Identities=17%  Similarity=0.175  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172           79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  158 (256)
                      ..+++++++++++...++.|-..++. +|...++.+.++..+++..+.+..++...... .+...|..+...|+ +++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~-~~~k~~lflilSGl-a~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGE-IGPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecccc-cCcceehhhhHHHH-HHHHH
Confidence            45889999999999999999888875 67888999999999998888887764321111 14455888888885 89999


Q ss_pred             HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172          159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      +.+|+++++..+++++..+..+.|+++++++++++||++|..+++|+.+|++|.++..+
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            99999999999999999999999999999999999999999999999999999877653

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.63  E-value=1.2e-14  Score=126.25  Aligned_cols=198  Identities=17%  Similarity=0.176  Sum_probs=155.3

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      .|+++++++.+++|+|.++++      +.++++..+|+++....+.....                +.+.....+..|++
T Consensus       100 ~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~~----------------~~~~~~~~~~~G~~  157 (303)
T PF08449_consen  100 KPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSSS----------------SSNSSSFSSALGII  157 (303)
T ss_pred             HHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHheeeeccccccc----------------ccccccccchhHHH
Confidence            489999999999999999995      99999999999998754432111                00111222335999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHH--hcCCCCccc--ccchhHHHHHHHHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLA--TNRNHSAWS--FKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~ll~~g~~~~~  156 (256)
                      +++++.++.|...+++++..+++. ++....++...++.++.++....  .++..+...  ...+..+..++...+ +..
T Consensus       158 ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~  236 (303)
T PF08449_consen  158 LLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGA  236 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHH
Confidence            999999999999999999887654 67889999999999988888776  332211111  112222334444443 677


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      +++.+.++..++.++...+++..+.-+++++++++++++++++.+|+|.++++.|+.++.+.|+|+
T Consensus       237 ~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  237 LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            888888899999999999999999999999999999999999999999999999999999887764

; GO: 0055085 transmembrane transport

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.61  E-value=1.1e-14  Score=119.03  Aligned_cols=166  Identities=16%  Similarity=0.106  Sum_probs=133.2

Q ss_pred             eehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 025172           29 VVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKY  108 (256)
Q Consensus        29 ~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~  108 (256)
                      ++.+.+++.|+.++. ..+++.+              +.|        ..|..+++.++.||+.|.+..+|..+.. +.-
T Consensus       122 ~vwvaLAvlGi~lL~-p~~~~~~--------------~lD--------p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~  177 (292)
T COG5006         122 FVWVALAVLGIWLLL-PLGQSVW--------------SLD--------PVGVALALGAGACWALYIVLGQRAGRAE-HGT  177 (292)
T ss_pred             HHHHHHHHHHHHhhe-eccCCcC--------------cCC--------HHHHHHHHHHhHHHHHHHHHcchhcccC-CCc
Confidence            556677888888876 2332111              122        3999999999999999999999998754 457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHH
Q 025172          109 SSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMF  188 (256)
Q Consensus       109 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll  188 (256)
                      .-+..-+.+++++.+++......    ..+.++.-...-+..+++++++.|.+-..++++.+....+.+++++|.++.+.
T Consensus       178 ~g~a~gm~vAaviv~Pig~~~ag----~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~  253 (292)
T COG5006         178 AGVAVGMLVAALIVLPIGAAQAG----PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALS  253 (292)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhcc----hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHH
Confidence            77888899999999998874332    12223444666678899999999999999999999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          189 DIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       189 ~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      +++++||+++..||.|++.|+.+..-..+.-+|+
T Consensus       254 G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         254 GLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            9999999999999999999999887666654443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.60  E-value=1.7e-14  Score=124.59  Aligned_cols=182  Identities=16%  Similarity=0.135  Sum_probs=134.2

Q ss_pred             chHHHHHHHHHhhcccccccccCCcce----eehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAK----VVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWT   77 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k----~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      .|++.++++.+++|||.+.+      |    ++|++++++|++++...++....                  ..+..+..
T Consensus        96 ~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~------------------~~~~~~~~  151 (290)
T TIGR00776        96 QLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAG------------------IKSEFNFK  151 (290)
T ss_pred             HHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccc------------------cccccchh
Confidence            46678889999999999888      7    88899999999988643221000                  00002235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH---HHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSL---FGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVG  154 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~  154 (256)
                      .|+++.++++++|+.|.+..|+..  + ++...++.++.   +++.......  . .. .++.  ....+. .+..|++ 
T Consensus       152 ~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~~--~~~~~~-~~~~Gi~-  220 (290)
T TIGR00776       152 KGILLLLMSTIGYLVYVVVAKAFG--V-DGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPLK--KYAILL-NILPGLM-  220 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcC--C-CcceehhHHHHHHHHHHHHHHHHH--h-cc-cchH--HHHHHH-HHHHHHH-
Confidence            799999999999999999999763  3 56777554444   3333222211  1 11 1111  222233 3448887 


Q ss_pred             HHHHHHHHHHHHh-ccCccchhhchhhHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHHhhheec
Q 025172          155 SGLCYVGLTWCVK-KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSL----LGSITVIIGLYILLWG  218 (256)
Q Consensus       155 ~~~~~~~~~~a~~-~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~----iG~~lii~gi~l~~~~  218 (256)
                      ..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++    +|+++++.|+.+....
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            6999999999999 99999999999999999999999999999999999    9999999999887543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.60  E-value=7.2e-15  Score=110.35  Aligned_cols=125  Identities=22%  Similarity=0.333  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025172           88 LLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVK  167 (256)
Q Consensus        88 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~  167 (256)
                      ++||.+.+..|+..++. ++...+++++..+++ +.+.....+...  ....+..++..+++.+++++++++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            47899999999999985 779999999999998 655555544322  12224456777888898888999999999999


Q ss_pred             ccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          168 KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       168 ~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      +.+++.++.+.+++|+++.+++++++||+++..+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00688 rarD rarD protein

Probab=99.59  E-value=7.6e-15  Score=124.52  Aligned_cols=151  Identities=9%  Similarity=0.012  Sum_probs=105.7

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|+++++++++++|||+++++      +++++++++|+.++.. .+                      + + .     .
T Consensus       105 ~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~-~~----------------------~-~-~-----~  148 (256)
T TIGR00688       105 INPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIV-LK----------------------G-S-L-----P  148 (256)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHH-Hc----------------------C-C-c-----h
Confidence            3799999999999999999996      9999999999988752 10                      0 0 0     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      ++++.++++|+.|.+..|+..++ +. ...... ............. ..............+|..+++.|+. +.++|.
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~  223 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLE-TLSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL  223 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHH-HHHHHHHHHHHHH-HhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence            35788999999999999987643 22 222211 1111111111111 1111111111122368888888875 889999


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHH
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL  192 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~  192 (256)
                      +|++++++.++++++.+.|++|+++.++++++
T Consensus       224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.58  E-value=2.3e-14  Score=119.85  Aligned_cols=178  Identities=10%  Similarity=0.069  Sum_probs=140.9

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      .|++.++++.+|+|||+++.|      +++++++.+|+....+..+ ++                        .     .
T Consensus       108 nPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g-~l------------------------p-----w  151 (293)
T COG2962         108 NPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLG-SL------------------------P-----W  151 (293)
T ss_pred             HHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcC-CC------------------------c-----H
Confidence            599999999999999999996      9999999999998763222 11                        1     3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVG  161 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  161 (256)
                      ..+.-++.|+.|..+-|+..   .++.+-....+..-....+...+..+...+.........+..++..|. .|+++..+
T Consensus       152 val~la~sf~~Ygl~RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~l  227 (293)
T COG2962         152 VALALALSFGLYGLLRKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLL  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHH
Confidence            46677899999999876553   244666666666666655555554443321011124456888888888 77899999


Q ss_pred             HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      |..+-++++-+..+.++|.+|..-.+++++++||+++..++...++|.+|++++.+..
T Consensus       228 f~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         228 FAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.45  E-value=2.7e-13  Score=111.03  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=144.5

Q ss_pred             HHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHH
Q 025172            5 ITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALT   84 (256)
Q Consensus         5 ~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l   84 (256)
                      .+.+++|+|+|.|.++.      |+.|+++|++|+.++++.|-...+                  ..+..+-.+|+++++
T Consensus       117 ~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~agd------------------~aggsnp~~GD~lvi  172 (336)
T KOG2766|consen  117 CVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAGD------------------RAGGSNPVKGDFLVI  172 (336)
T ss_pred             HHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeecccc------------------ccCCCCCccCcEEEE
Confidence            35678999999999888      699999999999999865543322                  333445569999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025172           85 VGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTW  164 (256)
Q Consensus        85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~  164 (256)
                      +++-+||+.++....+.|+. +.........++|+++..+- ++.+... ...++........+. ..++.++-|.+...
T Consensus       173 ~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w~~~i~~yl~-f~L~MFllYsl~pi  248 (336)
T KOG2766|consen  173 AGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHWDSAIFLYLR-FALTMFLLYSLAPI  248 (336)
T ss_pred             ecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEeehHHHHHHHH-HHHHHHHHHHhhHH
Confidence            99999999999999999985 77888999999999999888 4444321 112222222333333 44567777888888


Q ss_pred             HHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          165 CVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       165 a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      .+|..+++..++-....-.|++++  -.||-+.+|...+..+.+..|.+++..++
T Consensus       249 l~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re  301 (336)
T KOG2766|consen  249 LIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE  301 (336)
T ss_pred             heecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence            899999999999999999999988  66888899999999999999998885443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.44  E-value=3.6e-13  Score=109.06  Aligned_cols=192  Identities=16%  Similarity=0.169  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172            3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA   82 (256)
Q Consensus         3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll   82 (256)
                      |+-++++++++.+++.+|+      |..+++..++|+++.. ++..-..                  +........|.++
T Consensus       122 PIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~------------------g~e~~t~g~GElL  176 (337)
T KOG1580|consen  122 PIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG------------------GAEDKTFGFGELL  176 (337)
T ss_pred             CcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC------------------CCcccccchHHHH
Confidence            6677899999999999999      5999999999999986 4432111                  2233455699999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCC--cccccchhHHHHHHHHHHHHHHHHH
Q 025172           83 LTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHS--AWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      .++|-..-+.....+.+..+.+. ....++++..+.+.+.+....++.++..+  .+....+..|+-+..+++ ++.+++
T Consensus       177 L~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ  255 (337)
T KOG1580|consen  177 LILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQ  255 (337)
T ss_pred             HHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhh
Confidence            99999999999999888777543 44667888888888877766666554222  111122334666777777 889999


Q ss_pred             HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      ++.+.-+...+|..-+++....-.|+++.++++++++++..||+|..++..|+..-....+
T Consensus       256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK  316 (337)
T KOG1580|consen  256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK  316 (337)
T ss_pred             HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence            9999999999999999999999999999999999999999999999999999877654333

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.38  E-value=2.2e-12  Score=111.17  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=147.4

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.|++++++++++.+|+.+++.      +..++..+.|+.+... .+.                         .....|.
T Consensus       118 ~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~-~e~-------------------------~fn~~G~  165 (316)
T KOG1441|consen  118 LMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV-TEL-------------------------SFNLFGF  165 (316)
T ss_pred             hcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee-ccc-------------------------cccHHHH
Confidence            5799999999999999999995      8899999999988763 221                         2234999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh--cC-CchhHHHHHHHHHHHHHHH-HHHHHhcCCCC---cccccchhHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGK--RY-PCKYSSTAILSLFGAIQAA-ILCLATNRNHS---AWSFKGKIEIISVLYAGIV  153 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~--~~-~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~ll~~g~~  153 (256)
                      +.++++.+..+...++.|+..+  +. -++++...++.-++++.++ |.....+++..   ... ........+++.. +
T Consensus       166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s-v  243 (316)
T KOG1441|consen  166 ISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA-PWFVTFLILLLNS-V  243 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecc-ccchhhHHHHHHH-H
Confidence            9999999999999999999884  21 2678889999999999888 66665554322   110 0111122222333 3


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ  224 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~  224 (256)
                      +...-....+..+++++|.+.++.+.+.-++.+..++++|++++++.+..|+++.++|+++|.+.|.++++
T Consensus       244 ~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  244 LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            44444455568999999999999999999999999999999999999999999999999999988766543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.35  E-value=2.6e-11  Score=105.07  Aligned_cols=137  Identities=14%  Similarity=0.113  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccchhHHHHHHHHHHH
Q 025172           76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS--FKGKIEIISVLYAGIV  153 (256)
Q Consensus        76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g~~  153 (256)
                      ...|.+++++++++|+...+..|.. .+. ++..+.++++.++.+.+.+.....++. ....  ..+...+. ....+.+
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~   81 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQW-SYLKTLIQTPQKIF-MLAVSAV   81 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHcCHHHHH-HHHHHHH
Confidence            3589999999999999999999865 454 679999999999988776665443321 1110  01122232 3335666


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      ..+..+.++++++++.++..++++.++.|+++.+++++++||+++..+++|+++.++|+.+..
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999999999999999999999999999999999988765

>TIGR00688 rarD rarD protein

Probab=99.31  E-value=5.2e-11  Score=100.99  Aligned_cols=136  Identities=12%  Similarity=0.137  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCC---Cccc-ccchhHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNH---SAWS-FKGKIEIISVLYAGIV  153 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~~g~~  153 (256)
                      .|.+++++++++|+...+..|.. .+. ++..+.+++++++++++.+......+..   ...+ ......+..+...|+ 
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL-   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence            58899999999999999999984 454 7799999999999888766654433210   0111 101112344555565 


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      ..++.+.+++++++++++..++++.++.|+++.+++++++||+++..+++|.++.++|+.+..
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999987664

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.28  E-value=1.4e-10  Score=90.40  Aligned_cols=138  Identities=12%  Similarity=0.108  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc------CCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc---cccc------chhH
Q 025172           79 GTIALTVGTLLWASWFPIQSYIGKR------YPCKYSSTAILSLFGAIQAAILCLATNRNHSA---WSFK------GKIE  143 (256)
Q Consensus        79 G~ll~l~s~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~------~~~~  143 (256)
                      |.++++++.++.|.+.++.|+..++      ..++.....+....+.+++.+..+..++....   ....      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999987776      33789999999999999999998887763211   1000      1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172          144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      +..++..|+ ....-....+..+++.+|...++...+..+..+++++++++|+++..+++|.++.++|.++|.|
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            555555665 4456666777999999999999999999999999999999999999999999999999998865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.25  E-value=3.5e-10  Score=97.32  Aligned_cols=134  Identities=15%  Similarity=0.144  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172           80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      .++.++++++||...+..|+..++. ++  ..++.+..+++++.+........ ..+..... .+...+..+.......+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE-PD--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLPA-TFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhccc-CCCCCcch-hhHHHHHHHHHHHHHHH
Confidence            4678999999999999999877663 33  34666666666666655442111 12222122 23334444555778899


Q ss_pred             HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      .++++++++.+++.++++.++.|+++.+++++++||+++..+++|.++++.|+++....
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.19  E-value=6.7e-10  Score=98.49  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172           77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~  156 (256)
                      ..-.+.+++.-++|+.+.++.|...+...++....++++.+++++++++.+..++.. ..+.....+|..+...|+++ .
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-H
Confidence            366788999999999999999999988778899999999999999988877654311 11111233566777778766 5


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHH------hcccchhhHHHHHHHHHHHHhhheec
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL------LHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~------~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      +.+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|.++.++|+.+....
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            667789999999999999999999999999999999      69999999999999999999877643

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.16  E-value=1.2e-09  Score=82.63  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      .|.++.+++.++-+...++.|+..++.++ ......  .    .......  .    .        ....++.|+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~--~----~~~~~~~--~----~--------p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD--F----IAALLAF--G----L--------ALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH--H----HHHHHHH--h----c--------cHHHHHHHHHHHHH
Confidence            47889999999999999999988877532 221111  0    0000010  0    0        11246788999999


Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIP--LLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l--~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +|.+|++++++.+.+.+..+....+++..+.++.  ++||++++.+++|+++|++|+++..+.++|
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999888888885  899999999999999999999998765443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.09  E-value=3.3e-09  Score=89.24  Aligned_cols=189  Identities=13%  Similarity=0.116  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172            3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA   82 (256)
Q Consensus         3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll   82 (256)
                      -++|++++++++|+|++.+|      |.++++.+.|++++.......-+..         +....+.+....+...|.++
T Consensus        54 Il~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~lv~~~~~~~~~~~---------~~~~~~~~~~~~~~~~G~~~  118 (244)
T PF04142_consen   54 ILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVLVQLSSSQSSDNS---------SSSSVHHDASNQNPLLGLLA  118 (244)
T ss_pred             HHHHHHHHHHHHHcccchhh------HHHHHHHHHHHheeecCCccccccc---------cccccccccccchhHhHHHH
Confidence            36899999999999999996      9999999999999863221110000         00000001123445799999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           83 LTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      .++++++-+...++.++..|+.. +.+..+......+.++.++.....+.. .....+...  +-...+.-++..+++=.
T Consensus       119 vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G--~~~~~~~~i~~~a~gGl  196 (244)
T PF04142_consen  119 VLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHG--YSWWVWIVIFLQAIGGL  196 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhh--cchHHHHHHHHHHHhhH
Confidence            99999999999999999998754 333334444444555544443333221 111111111  11112222223334445


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITV  208 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~li  208 (256)
                      +....+|+.+...=+....+..+++.++++++|+.+++....+|+.++
T Consensus       197 lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  197 LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            566788899988889999999999999999999999999999998653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.08  E-value=2.5e-09  Score=90.64  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025172           90 WASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKK  169 (256)
Q Consensus        90 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~  169 (256)
                      |+...+..|...+...++....+++...+.+++.+.....         ....++...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5566677787766555778889999988888776654322         1233466667777778889999999999999


Q ss_pred             CccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          170 GPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       170 ~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      ++..++++..++|+++.+++++++||+++..+++|..+.++|+.+....
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            9999999999999999999999999999999999999999999887643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.07  E-value=1.3e-09  Score=80.96  Aligned_cols=108  Identities=20%  Similarity=0.370  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHH
Q 025172          113 ILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL  192 (256)
Q Consensus       113 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~  192 (256)
                      ++..++.+.+.......++..+.+.......+..++..|++....++.++++++++.++ .++++..+.|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            55666666666665554332111111112335566666776767899999999999995 88899999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          193 LHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       193 ~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +||+++..++.|.+++++|+.+..+.+.+
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.05  E-value=8.2e-09  Score=89.28  Aligned_cols=132  Identities=14%  Similarity=0.074  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172           80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      .+..++-.+.|+...+..|....+. +|..++++++..+++++++.....+..   ..  ...++...+..|.+.....+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~--~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---LP--TLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---CC--cHHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999887764 789999999999999887776544321   11  23356666777876666778


Q ss_pred             HHHHHHH-hccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          160 VGLTWCV-KKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       160 ~~~~~a~-~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      .+++.+. ++.++..++++.++.|+++.+++++ +||+++..+++|.++.++|+++....
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8888998 9999999999999999999999985 79999999999999999999887543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.05  E-value=6.7e-09  Score=87.55  Aligned_cols=181  Identities=16%  Similarity=0.194  Sum_probs=133.0

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      +++|+.+++.+|.-||++|..      ..-+++..+|+.+.+ +++-.+                         ...|.+
T Consensus       120 si~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft-~KsTqf-------------------------~i~Gf~  167 (349)
T KOG1443|consen  120 SILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFT-YKSTQF-------------------------NIEGFF  167 (349)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEE-ecccce-------------------------eehhHH
Confidence            689999999999999999985      666677778888876 444322                         348888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCC----chhHHHHHHHHHHHHHHHHHHHHhcCCCC-----cccccchhH-HHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRYP----CKYSSTAILSLFGAIQAAILCLATNRNHS-----AWSFKGKIE-IISVLYAG  151 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~-~~~ll~~g  151 (256)
                      +..+++++-++--.+.+...++.+    +|+...+...-.-.+.+++..+..|+...     .+...+... +..+..++
T Consensus       168 lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~  247 (349)
T KOG1443|consen  168 LVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS  247 (349)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH
Confidence            888888887777777776666543    67888888888888888888887776422     122222221 22222222


Q ss_pred             HHHHHHHHHH---HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172          152 IVGSGLCYVG---LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL  215 (256)
Q Consensus       152 ~~~~~~~~~~---~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~  215 (256)
                      + +..+++.+   -+..+.+++....++..-..-+.+.+++.++.+|+++...|+|..++..|+.++
T Consensus       248 l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  248 L-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             H-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            2 22333333   346677888999999999999999999999999999999999999999999888

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=9e-09  Score=88.78  Aligned_cols=192  Identities=15%  Similarity=0.126  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL   83 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~   83 (256)
                      +.|+++.++++++|++++|      |.++++.++|+.++-......-+               ........+...|....
T Consensus       130 ~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~~~~---------------a~~~~~~~n~~~G~~av  188 (345)
T KOG2234|consen  130 LTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLSPTG---------------AKSESSAQNPFLGLVAV  188 (345)
T ss_pred             HHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCCCCC---------------ccCCCcccchhhhHHHH
Confidence            4688999999999999996      99999999999987522111100               00012234556999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH-HHHHHHHHHHHHhcCCCCccc-c---cchhHHHHHHHHHHHHHHHH
Q 025172           84 TVGTLLWASWFPIQSYIGKRYPCKYSSTAILSL-FGAIQAAILCLATNRNHSAWS-F---KGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~-~---~~~~~~~~ll~~g~~~~~~~  158 (256)
                      +.+|+.-+...++.++..|+-..+..+.-.++. +|.++.....+..+.....+. +   .+..-|...+..++     +
T Consensus       189 l~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~-----g  263 (345)
T KOG2234|consen  189 LVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAV-----G  263 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhc-----c
Confidence            999999999999999999864433333333443 444444443333322111111 1   11122444444443     3


Q ss_pred             HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      =.+...-+|+.+-..=+....+..+++.+.++.+++-+++....+|+.+++.++.++...+.+
T Consensus       264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            344455567777766677778899999999999999999999999999999999999844443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.01  E-value=1.2e-08  Score=88.51  Aligned_cols=126  Identities=13%  Similarity=0.065  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      ++.++++++|+...+..|...++. +|..+.++++.++++.+.+...  .+   ...      +..++..|+......+.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~---~~~------~~~~~~~g~~~~~~~~~   74 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RP---KVP------LNLLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CC---CCc------hHHHHHHHHHHHHHHHH
Confidence            668899999999999999888775 7899999999998766544331  11   111      22233345544445566


Q ss_pred             HHHHHHhc-cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          161 GLTWCVKK-KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       161 ~~~~a~~~-~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      +++.++++ .++..++++.++.|+++.+++++++||+++..+++|+++.++|+.+....
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            77788887 57889999999999999999999999999999999999999999888754

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.5e-08  Score=84.36  Aligned_cols=205  Identities=13%  Similarity=0.090  Sum_probs=138.0

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCC-CCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      .++-++++++++.++|.+.+|      ..++++..+|+++..+.+.+.+.. .++++.+        +..+....|..|+
T Consensus       101 sll~nM~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~--------~~~~~~~~w~iGi  166 (330)
T KOG1583|consen  101 SLLANMILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRSKLSGLDSG--------SAQSDFFWWLIGI  166 (330)
T ss_pred             cHHHHHHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhhhhcccccC--------cccccchHHHHHH
Confidence            467899999999999999996      999999999999988766543322 1111111        1123345678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHH-H-------hcCC---CCcccccchhHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCL-A-------TNRN---HSAWSFKGKIEIISVL  148 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~-------~~~~---~~~~~~~~~~~~~~ll  148 (256)
                      .+...+-+.-|.-.+.++..=+++ +++-+..+|.=......+++..- +       ...+   .+.....-+..|..++
T Consensus       167 ~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl  246 (330)
T KOG1583|consen  167 ALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL  246 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH
Confidence            998888888888777776655544 36677788877777766655531 0       0000   0011111223344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +-.+ ....+----+..-...++.++++...+.-.++++++++.|+++++++.|+|++++..|..++.....+
T Consensus       247 ~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~  318 (330)
T KOG1583|consen  247 FNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH  318 (330)
T ss_pred             HHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3322 33222223334445566778899999999999999999999999999999999999999888654433

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=4.2e-09  Score=89.58  Aligned_cols=191  Identities=11%  Similarity=0.107  Sum_probs=149.7

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      .+|+++++.-.++++.+++.+.      +.++...++|...... .+.++                         ...|+
T Consensus       112 ~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~-~d~sf-------------------------~~~gY  159 (314)
T KOG1444|consen  112 LTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF-TDLSF-------------------------NLRGY  159 (314)
T ss_pred             chHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc-cccee-------------------------cchhH
Confidence            3689999999999998888885      7777777777766542 22211                         22699


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCC----CcccccchhHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNH----SAWSFKGKIEIISVLYAGIVGS  155 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~g~~~~  155 (256)
                      .+++..++.-+.+.+..|+..+... +.+.+++|..+.+...+....+++++..    +.........+..+...++++.
T Consensus       160 ~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf  239 (314)
T KOG1444|consen  160 SWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGF  239 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHH
Confidence            9999999999999999998777432 5588899999999999999988877521    1101112344677778888776


Q ss_pred             HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172          156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ  224 (256)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~  224 (256)
                      ++.|.. .++.+..+++..++.....-..+.+-..++++++.++...+|..+-++|..++.+.+.++++
T Consensus       240 ~isy~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  240 GISYTS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK  307 (314)
T ss_pred             HHHHHH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence            666666 49999999999999998888888888888899999999999999999999999988765544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.98  E-value=8.2e-09  Score=87.01  Aligned_cols=192  Identities=14%  Similarity=0.110  Sum_probs=147.1

Q ss_pred             HHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHH
Q 025172            6 TFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTV   85 (256)
Q Consensus         6 ~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~   85 (256)
                      +++++.++.++|.++..      .+..++.-.|+.+..+++.....                 .+++.++...|+.++..
T Consensus       123 Vmlmg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~s~-----------------~~~g~~ns~~G~~Ll~~  179 (327)
T KOG1581|consen  123 VMLMGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSDSS-----------------SKSGRENSPIGILLLFG  179 (327)
T ss_pred             HHHHHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCCCc-----------------cccCCCCchHhHHHHHH
Confidence            56788899999999984      88888888888887765322100                 03445667799999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cchhHHHHHHHHHHHHHHHHHHHH
Q 025172           86 GTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSF--KGKIEIISVLYAGIVGSGLCYVGL  162 (256)
Q Consensus        86 s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~g~~~~~~~~~~~  162 (256)
                      .-++-+.-+..+.++.+++. +.+.++++..+++++.........+...+...+  ..+..+.-++.... +.++++.+.
T Consensus       180 ~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI  258 (327)
T KOG1581|consen  180 YLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFI  258 (327)
T ss_pred             HHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhhee
Confidence            99999999999999888654 678899999999988877764332222111111  11222333343444 667899999


Q ss_pred             HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      ++-+++.++...+.++.+.-+++++++.+.++.++++.|+.|..+++.|+++-.+-++|
T Consensus       259 ~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  259 FYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999887776655

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.3e-09  Score=90.45  Aligned_cols=194  Identities=15%  Similarity=0.094  Sum_probs=144.8

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI   81 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (256)
                      .-+|+.++..+++|||-+..-      ..++.+.+.|-.+=  .|..                     +..+.-...|.+
T Consensus       138 ttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lG--vdqE---------------------~~~~~ls~~Gvi  188 (347)
T KOG1442|consen  138 TTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLG--VDQE---------------------GSTGTLSWIGVI  188 (347)
T ss_pred             hhhHHHHhHHhhccccccccc------ceeehhheehheec--cccc---------------------cccCccchhhhH
Confidence            457999999999999999883      55555555554331  1221                     112223349999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCC--cc-cccchhHHHHHHHHHHHHHHH
Q 025172           82 ALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHS--AW-SFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        82 l~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      +++.+.++-|+..+..|+..... ..-+..+.|+.+.+.+++++...+.++-..  .+ .......|..+...|+++..+
T Consensus       189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m  268 (347)
T KOG1442|consen  189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM  268 (347)
T ss_pred             HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999765433 256888999999999999888877664211  11 122445678888888877776


Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN  225 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~  225 (256)
                      +|... +-+|-.+|.+-.+-..-.-..-.++++.+.+|.-+..-|-|-+++++|..++.+.|..+++.
T Consensus       269 gyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  269 GYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             hheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            66653 66788888888888888888888899999999999999999999999999999887665543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.94  E-value=3.7e-08  Score=85.34  Aligned_cols=131  Identities=11%  Similarity=0.087  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      .+.+++++++++|+...+..|...+.. +|....++++..+++++.+...  .+   ..+.   ..+..++. +.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~---~~~~---~~~~~~~~-~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FP---RLRQ---FPKRYLLA-GGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--cc---cccc---ccHHHHHH-HhHHHHH
Confidence            567889999999999999999988886 7799999999999888765421  11   1110   11222222 3323334


Q ss_pred             HHHHHHHHHh----ccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          158 CYVGLTWCVK----KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       158 ~~~~~~~a~~----~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      .+.+++.+++    ..++..++++.++.|+++.++++++++|+++..+++|+++.++|+++....
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            4455555554    567788899999999999999999999999999999999999999888754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.84  E-value=9.5e-08  Score=82.99  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=96.4

Q ss_pred             HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025172           92 SWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGP  171 (256)
Q Consensus        92 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~  171 (256)
                      .++++.|...++.+.|...+.+++..+.+...+........  ... .+..+|..++..|++ ..+.+.+.+++++++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPK--RLK-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCC--CCC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence            34456788887767889999999999877665542111111  111 134467788888886 47888999999999999


Q ss_pred             cchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          172 VFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       172 ~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      +.++++.++.|+++.++++++++|+++..++.|.+++++|+.+..
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999998764

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.80  E-value=8e-08  Score=70.97  Aligned_cols=67  Identities=18%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          150 AGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       150 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      .++.+.++++.++.+++++.|.+.+-.+.++.++++.+++++++||+++..+++|.+++++|+++..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3446778899999999999999999999999999999999999999999999999999999998764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.79  E-value=4.2e-07  Score=80.64  Aligned_cols=126  Identities=14%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025172           90 WASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFK-GKIEIISVLYAGIVGSGLCYVGLTWCVKK  168 (256)
Q Consensus        90 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~g~~~~~~~~~~~~~a~~~  168 (256)
                      -..+.+..|...+..+-|+.++.++++++.++..+... .+.. ...+.. ...++..++..|++.. ..+...+.++++
T Consensus        61 s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~llp~gl~~~-~~~~~~~~sl~~  137 (350)
T PTZ00343         61 NVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFR-KIPRIKSLKLFLKNFLPQGLCHL-FVHFGAVISMGL  137 (350)
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCC-CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence            34556667888888754899999999999876544432 2211 111111 2235667777887554 446667799999


Q ss_pred             cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          169 KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       169 ~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      .+++.+.++..++|++++++++++++|+++..++.|.+++++|+.+....
T Consensus       138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~  187 (350)
T PTZ00343        138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK  187 (350)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence            99999999999999999999999999999999999999999999988753

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.71  E-value=5.4e-08  Score=80.90  Aligned_cols=185  Identities=14%  Similarity=0.145  Sum_probs=141.9

Q ss_pred             HHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHH
Q 025172            8 VIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGT   87 (256)
Q Consensus         8 l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~   87 (256)
                      +-+.++-+.|.++..      .++..+..+|+++..+.|..                  .+|    .....|.++.-.+-
T Consensus       148 iggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~------------------~sP----NF~~~Gv~mIsgAL  199 (367)
T KOG1582|consen  148 IGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQ------------------TSP----NFNLIGVMMISGAL  199 (367)
T ss_pred             heeeeeccccccHHH------HHHHHHHHHHHHhhhhcccc------------------cCC----CcceeeHHHHHHHH
Confidence            445556666777765      99999999999998875542                  111    23348999888888


Q ss_pred             HHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--chh-HHHHHHHHHHHHHHHHHHHHH
Q 025172           88 LLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSFK--GKI-EIISVLYAGIVGSGLCYVGLT  163 (256)
Q Consensus        88 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~-~~~~ll~~g~~~~~~~~~~~~  163 (256)
                      ++-|.-..++++..+..+ +...+.++...++.+.+.......++-.+.|...  .+. -....++... ++.++.....
T Consensus       200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VL  278 (367)
T KOG1582|consen  200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVL  278 (367)
T ss_pred             HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHH
Confidence            888988888888888655 5577889999999998888877777644444421  111 2333344443 6677777778


Q ss_pred             HHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          164 WCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       164 ~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      -.++..++..++.+....--+++++++++|..+++....-|..+++.|+++-.+.++.
T Consensus       279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n  336 (367)
T KOG1582|consen  279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN  336 (367)
T ss_pred             HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence            8899999999999999999999999999999999999999999999999999888743

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.69  E-value=2.9e-07  Score=77.51  Aligned_cols=138  Identities=13%  Similarity=0.100  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccchhHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS-FKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~~~~  156 (256)
                      .|+++.+.+-+.|+....+.|-+. .. ++..+..++.+.+..+.+.......+....+. ..++..+..+...++ -..
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li~   83 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LIG   83 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HHH
Confidence            899999999999999999987664 43 56899999999999988877766554222122 223345666666666 456


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      ..++.|.++........+++--++.|++.+++|.+++||+++..|++..++..+|+..-.+.
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999998776653

>TIGR00803 nst UDP-galactose transporter

Probab=98.68  E-value=1.8e-07  Score=77.59  Aligned_cols=201  Identities=15%  Similarity=0.069  Sum_probs=118.9

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCC----CCCCchhH
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHP----TRKTERWT   77 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   77 (256)
                      .|+++++..+.+.++|.+..      |+++.++...|+....+.+.+....   ..-.......+.++    .....+..
T Consensus        14 ~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al---~~l~~~~~~~~~~~~~~~~~~~g~~~   84 (222)
T TIGR00803        14 NLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSL---KLLKLGVAIVQMVQSSAKTLMFGNPV   84 (222)
T ss_pred             chHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHH---HHHHHhHeeeecCCCCccccccccHH
Confidence            46788888888888998855      5999988888887543322111000   00000000000000    11122445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH-HHHHHHHHHHHHHhcCC-CCccc--ccchhHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILS-LFGAIQAAILCLATNRN-HSAWS--FKGKIEIISVLYAGIV  153 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~~g~~  153 (256)
                      .|....+.++++-+...++.++..++.+........+. ..+.+...........+ ...+.  ...+...+.+   . +
T Consensus        85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~  160 (222)
T TIGR00803        85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV---G-L  160 (222)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH---H-H
Confidence            78888888888888888888887665432221212222 22222111111111111 01111  0111111111   1 2


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL  215 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~  215 (256)
                      ..+.+..+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++|
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            45567778899999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.67  E-value=1.7e-06  Score=73.78  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      .+....+..++.|+......|.......+.....+.+...+.....+.......  ....  ....+...+..+.+....
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPR--GLRP--ALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcc--cccc--cccchHHHHHHHHHHHHH
Confidence            778888888899999999998887652244545555776666663323221110  0111  111134455566678889


Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHH-HHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDI-PLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~-l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      .+.+++.++++.++..++.+.++.|++..++++ ++++|+++..++.|..+.++|+.+........
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            999999999999999999999999999999997 66799999999999999999999998766543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.65  E-value=8.4e-07  Score=74.95  Aligned_cols=178  Identities=19%  Similarity=0.187  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhhcccccccccCCcceee---hhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVV---GTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT   80 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~---g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (256)
                      +.+.++++++++|.-+..+     +.+   ++++.++|+.+....+.....                  .++..+...|.
T Consensus        84 vg~sl~gv~~fgEW~~~~~-----~~~G~~Al~liiiGv~lts~~~~~~~~------------------~~~~~~~~kgi  140 (269)
T PF06800_consen   84 VGTSLIGVLFFGEWTTTTQ-----KIIGFLALVLIIIGVILTSYQDKKSDK------------------SSSKSNMKKGI  140 (269)
T ss_pred             HHHHHHHHhhcCCCCCcch-----HHHHHHHHHHHHHHHHHhccccccccc------------------cccccchhhHH
Confidence            3578899999999988775     343   567778888887642222100                  11234556899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      +..+++.+.|..|.++.|...   .+++...+-+.+.-.+...++....++   ...  ....|. -+..|++ -.++-.
T Consensus       141 ~~Ll~stigy~~Y~~~~~~~~---~~~~~~~lPqaiGm~i~a~i~~~~~~~---~~~--~k~~~~-nil~G~~-w~ignl  210 (269)
T PF06800_consen  141 LALLISTIGYWIYSVIPKAFH---VSGWSAFLPQAIGMLIGAFIFNLFSKK---PFF--EKKSWK-NILTGLI-WGIGNL  210 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC---CChhHhHHHHHHHHHHHHHHHhhcccc---ccc--ccchHH-hhHHHHH-HHHHHH
Confidence            999999999999999977533   245655554444333333333332221   111  111222 2345653 346777


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHhh
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIG----SLLGSITVIIGLYI  214 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~----~~iG~~lii~gi~l  214 (256)
                      +|..+.++.+.+..=.+..+.++++.+.+.+++||+=+.+    .++|.+++++|.++
T Consensus       211 ~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  211 FYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            8899999999999999999999999999999999987654    56788888888754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.60  E-value=5.2e-07  Score=71.81  Aligned_cols=187  Identities=11%  Similarity=0.065  Sum_probs=127.2

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL   83 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~   83 (256)
                      .|+.+++++++++|+...      |+++.++++.|+.++...|.                        .....+.|+..+
T Consensus        91 AFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN------------------------~~a~e~iGi~~A  140 (290)
T KOG4314|consen   91 AFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN------------------------EHADEIIGIACA  140 (290)
T ss_pred             HHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc------------------------hhhhhhhhHHHH
Confidence            578999999999999988      59999999999999974332                        123345999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCC--chhHHHHHHHHHHHHHHHHHHHHhc-CCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           84 TVGTLLWASWFPIQSYIGKRYP--CKYSSTAILSLFGAIQAAILCLATN-RNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        84 l~s~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      +.|+..-|.|-+.-|+....-.  +.-.++....++...+..+..++.. ...+.++-.....|..+...+.+..+..+ 
T Consensus       141 V~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAFN~-  219 (290)
T KOG4314|consen  141 VGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAFNF-  219 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHHhh-
Confidence            9999999999999998665321  2222222222222222222222111 11223331122347766655554444333 


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +.+.++....|...++-+.+...--...+.++-+-..+...+.|.++|++|.++....+.+
T Consensus       220 ~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  220 LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            3468888889999888888888888888888777778888999999999999888776543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.58  E-value=1.6e-06  Score=72.65  Aligned_cols=192  Identities=14%  Similarity=0.139  Sum_probs=132.6

Q ss_pred             hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172            3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA   82 (256)
Q Consensus         3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll   82 (256)
                      =+|+.+++.-+++.++..++      |+|+.....|+..+...|-. ..               .+|-....+-..|+++
T Consensus       123 iIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~-~~---------------~~p~~d~s~iitGdll  180 (372)
T KOG3912|consen  123 IIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVH-LV---------------TDPYTDYSSIITGDLL  180 (372)
T ss_pred             hhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeecc-cc---------------cCCccccccchhhhHH
Confidence            36899999999999999995      99999999999887632211 00               0112233455699999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcC-----CCCcccccchhHHHH---------H
Q 025172           83 LTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNR-----NHSAWSFKGKIEIIS---------V  147 (256)
Q Consensus        83 ~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------l  147 (256)
                      .+++-+.-|+..+.-+|..++. .+|...+.|..++|.+++-........     ..+........+|.-         .
T Consensus       181 IiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~  260 (372)
T KOG3912|consen  181 IIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPS  260 (372)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCch
Confidence            9999999999999987766654 378999999999997665555433221     111111110111221         1


Q ss_pred             HHHHHHHHHHHHHHHH----HHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          148 LYAGIVGSGLCYVGLT----WCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       148 l~~g~~~~~~~~~~~~----~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      ++..+.+..++-.++|    .--+..++++=.++..+...+-=+++.....|.++..|+.|.++.+.|+++|.
T Consensus       261 l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  261 LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233333334444444    23455667777788888888888889999999999999999999999999986

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.53  E-value=1.9e-06  Score=74.55  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172           79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  158 (256)
                      |+++.++++++|+...+..|+.. ..+. ....  ...++.++..........+  ...  ....+..-+..|+ .-..+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence            57889999999999999998775 3322 2222  4555555555444443321  111  1112222333343 35678


Q ss_pred             HHHHHHHHhccCccchhhchh-hHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHhhheecc
Q 025172          159 YVGLTWCVKKKGPVFTAAFSP-LVQIMAAMFDIPLLHERLHIGS----LLGSITVIIGLYILLWGK  219 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~s~~~~-l~pv~a~ll~~l~~~E~i~~~~----~iG~~lii~gi~l~~~~~  219 (256)
                      +.+|+.++++.+.+.+-.+.+ ++++++.+++.+++||+.+..+    ++|.+++++|+++....+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            899999999999999988888 9999999999999999999999    999999999998875543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.46  E-value=8.1e-06  Score=70.67  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172           77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~  156 (256)
                      ..|..++++++++|+......|....+. ++....++++.++++++++.......   ..   ...++...+..|+. .+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-~~   82 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-LG   82 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-HH
Confidence            5899999999999999999999988875 77999999999999888765432111   11   22345556666664 56


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      ..+.++++++++.++..++.+.++.|+++.+++.    |++.  +..+.++.++|+++...
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence            6778889999999999999999999999998873    5554  34566777888877653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.39  E-value=1.6e-05  Score=69.76  Aligned_cols=144  Identities=10%  Similarity=-0.002  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172           75 RWTFGTIALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIV  153 (256)
Q Consensus        75 ~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~  153 (256)
                      +.+.+.+++-.-+++-+...+.+..+.++. .-|....++....-.+...+...... ....+.......|+..+..++ 
T Consensus        10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~-   87 (334)
T PF06027_consen   10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLAL-   87 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHH-
Confidence            445667777777777777777776665542 23444444444443333333322222 111222112234666666676 


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      .=+.+-++.+.|+++++.+.+.++.....++++++++++++++.++.+++|+++++.|+.+......
T Consensus        88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            5568888999999999999999999999999999999999999999999999999999998887754

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.36  E-value=5.7e-07  Score=72.89  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccc-cchhHHHHHHHHHHH
Q 025172           77 TFGTIALTVGTLLWASWFPIQSYIGKR-YPCKYSSTAILSLFGAIQAAILCLATNRNHSA-WSF-KGKIEIISVLYAGIV  153 (256)
Q Consensus        77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~ll~~g~~  153 (256)
                      ..|.+++...++.-+.+....|+..+- .-.....++|..+.+..+++...++.++..+. ..- .+.....+.+..|+ 
T Consensus       154 N~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-  232 (309)
T COG5070         154 NPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-  232 (309)
T ss_pred             CCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-
Confidence            378999999999999999999876652 12448889999999999999999888763221 111 12233556666776 


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccc
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM  223 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~  223 (256)
                      +++.--++-.|+++-.+.+..+++..+.-.-..+-|.++|+|+.+..++....+-..+..++.+.+.+++
T Consensus       233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~  302 (309)
T COG5070         233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ  302 (309)
T ss_pred             HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556678999999999999999999999999999999999999999999998888888877665433

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.33  E-value=9.6e-06  Score=60.45  Aligned_cols=69  Identities=23%  Similarity=0.374  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          151 GIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       151 g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      .+++.+++++++.++++++|...+ +++.-+--+.+.+++++++||++|+.+++|..+|++|++......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            445667899999999999998887 555678899999999999999999999999999999998885544

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.31  E-value=5.5e-06  Score=71.86  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhH-HHHHHHHHHHHhccc--chh----hHHHHHHHHHHHHhhhe
Q 025172          144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLV-QIMAAMFDIPLLHER--LHI----GSLLGSITVIIGLYILL  216 (256)
Q Consensus       144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~-pv~a~ll~~l~~~E~--i~~----~~~iG~~lii~gi~l~~  216 (256)
                      |..++. -+.+......+.|+|+++.+++.+..+.+.. ...+++-|.++++|.  .+.    ...+|+.+++.|+++..
T Consensus       213 y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~  291 (300)
T PF05653_consen  213 YLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS  291 (300)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence            444333 3446667777788999999999887766654 555666667778874  333    35677888889998875


Q ss_pred             ecc
Q 025172          217 WGK  219 (256)
Q Consensus       217 ~~~  219 (256)
                      ..|
T Consensus       292 ~~~  294 (300)
T PF05653_consen  292 SSK  294 (300)
T ss_pred             ccC
Confidence            544

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.28  E-value=1.7e-05  Score=58.30  Aligned_cols=69  Identities=12%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          151 GIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       151 g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      .+++.+++|.++..+++++|...+ ++..-+.-+.+.++++++|||++++.+++|+++|++|++.....+
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344667889999999999998877 555778889999999999999999999999999999999986544

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.10  E-value=8.9e-05  Score=54.30  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          153 VGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      .+.+++|++...++|++|...+ ++..-+--+.+.+.+++++||++++.+++|.++++.|+....
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3567889999999999998876 777788899999999999999999999999999999998763

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.08  E-value=4.6e-05  Score=66.15  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHH
Q 025172           75 RWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVG  154 (256)
Q Consensus        75 ~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~  154 (256)
                      ++..|..+++.|+++.+....++|+...+.+. -..-.   -             ....+.+.  ++. |    +.|+..
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~---~-------------~~~~~~l~--~~~-W----~~G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA---G-------------SGGRSYLR--RPL-W----WIGLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc---c-------------chhhHHHh--hHH-H----HHHHHH
Confidence            45699999999999999999999987665421 00000   0             00000011  111 2    233444


Q ss_pred             HHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          155 SGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      .+++..+...++...|++.++.+..+.-++..+++..++||+++...++|++++++|..+......++
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~  127 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKE  127 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCC
Confidence            45666788889999999999999999999999999999999999999999999999988776544433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.08  E-value=0.00014  Score=63.24  Aligned_cols=127  Identities=17%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhhcC-Cc--hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025172           92 SWFPIQSYIGKRY-PC--KYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKK  168 (256)
Q Consensus        92 ~~~v~~k~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~  168 (256)
                      .+.+.++++.++. ..  +..+++.++...++...+..........     ....+...+..++ ...++..+-+.++++
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~   87 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKY   87 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            3446666665532 23  6788888888888877666554441111     1112333444454 556777889999999


Q ss_pred             cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172          169 KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ  224 (256)
Q Consensus       169 ~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~  224 (256)
                      ++...-.+.-...|+..++++++++|++.+..++++.+++++|+++....+.++.+
T Consensus        88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            99999999999999999999999999999999999999999999999887654433

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.08  E-value=7.7e-07  Score=74.01  Aligned_cols=136  Identities=11%  Similarity=0.102  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172           77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~  156 (256)
                      .+|..+..+| ..+....++.++....  +|......++++--++..+.......    +.+.....-.++++=|+++ .
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~----~v~gp~g~R~~LiLRg~mG-~  108 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQ----PVIGPEGKRKWLILRGFMG-F  108 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEee----eeecCCCcEEEEEeehhhh-h
Confidence            3788888888 7777778888777665  44656665543333222222211111    1111111112233345533 3


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      .+.+..+|++++.+-+.+.++..+.|+++++++|++++|+.+....+|..+.+.|++++.+...
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence            5566778999999999999999999999999999999999999999999999999999876543

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.07  E-value=7.8e-05  Score=54.28  Aligned_cols=66  Identities=21%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172          152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      +++.+.+|++...++|++|...+ ++..-+-.+.+.+.+++++||++|+.+++|..++++|++....
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            34567889999999999998876 7777899999999999999999999999999999999988754

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.06  E-value=2.7e-05  Score=56.30  Aligned_cols=67  Identities=25%  Similarity=0.330  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          153 VGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      ++..++|.+...++|++|...+ ++..-.-.+.+.+.++++|||+++..+++|..++++|+......+
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            3556889999999999998776 888889999999999999999999999999999999998876543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.02  E-value=0.00025  Score=54.37  Aligned_cols=131  Identities=17%  Similarity=0.147  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172           80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY  159 (256)
Q Consensus        80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  159 (256)
                      .++++.++++-++...+..++.++..+++...++.+..+.+.+.+..+..++.  .........|+.++ -|+ ..+..-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence            46788888888898888888888866689999999999999888888776653  22211222344444 444 455666


Q ss_pred             HHHHHHHhccCccchhhc-hhhHHHHHHHHHHH----HhcccchhhHHHHHHHHHHHHhh
Q 025172          160 VGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIP----LLHERLHIGSLLGSITVIIGLYI  214 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l----~~~E~i~~~~~iG~~lii~gi~l  214 (256)
                      .+..+.+++++++.+... ..-|-+.+++++.+    .-+++++..+++|.+++++|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777889999998877554 44566667777765    34688999999999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.90  E-value=0.00056  Score=60.21  Aligned_cols=194  Identities=14%  Similarity=0.120  Sum_probs=109.5

Q ss_pred             HHHHHHHHHhhcccc---cccccCCcceeehhhheeccceeeeee---cCCccCCCCCchhhhhhhhcccCCC-CCCchh
Q 025172            4 VITFVIALPFGLETV---DIKGISGKAKVVGTLVCIGGAMLLTLY---KGMPLFDHSYSQAETAINVMHMHPT-RKTERW   76 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~---~~~~~~~~~k~~g~~l~~~Gi~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (256)
                      ++..++..++++|..   +..+  +..-.+|+++.++|+++....   +++..                 +.+ .++.+.
T Consensus       112 v~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~~~~-----------------~~~~~~~~~~  172 (345)
T PRK13499        112 IVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKERKM-----------------GIKKAEEFNL  172 (345)
T ss_pred             HHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhccccc-----------------ccccccccch
Confidence            456677788888765   2221  111267788888999887631   11100                 000 123455


Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHhhhcCCchhHHHHHHHH---HHHHHHH-HHHHH---hcCCCCccccc-ch
Q 025172           77 TFGTIALTVGTLLWASWF-------PIQSYIGKRYPCKYSSTAILSL---FGAIQAA-ILCLA---TNRNHSAWSFK-GK  141 (256)
Q Consensus        77 ~~G~ll~l~s~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~-~~~~~---~~~~~~~~~~~-~~  141 (256)
                      .+|.++++++++.++.|.       ...+...+...++.....-+..   +++.+.- +.+..   .++..+..... .+
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            699999999999999999       5444322221233333333332   3333222 22221   11211111110 10


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh----hchhhHHHHHHHHHHHHhcccch------hhHHHHHH
Q 025172          142 -----IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTA----AFSPLVQIMAAMFDIPLLHERLH------IGSLLGSI  206 (256)
Q Consensus       142 -----~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s----~~~~l~pv~a~ll~~l~~~E~i~------~~~~iG~~  206 (256)
                           .....-...|+ .=.+++.+|..+-++.+.....    +.+.+..+++.+++++ +||.=+      ...++|.+
T Consensus       253 ~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        253 KPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHH
Confidence                 11111233344 3456777888888887655443    3448888999999994 999766      66789999


Q ss_pred             HHHHHHhhheec
Q 025172          207 TVIIGLYILLWG  218 (256)
Q Consensus       207 lii~gi~l~~~~  218 (256)
                      ++++|..+..+.
T Consensus       331 liI~g~~lig~~  342 (345)
T PRK13499        331 VIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHhhc
Confidence            999998887654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00034  Score=60.03  Aligned_cols=190  Identities=14%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL   83 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~   83 (256)
                      +..++++..++|||+++..      .+|++++++|-.+++...+...+.      .+..+..+   ...+..+ +.....
T Consensus       102 i~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~haP~e~~i------~t~~el~~---~~~~~~F-liy~~~  165 (335)
T KOG2922|consen  102 IISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHAPKEQEI------ESVEEVWE---LATEPGF-LVYVII  165 (335)
T ss_pred             HHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEecCccccc------ccHHHHHH---HhcCccH-HHHHHH
Confidence            5678999999999999998      999999999999998543322111      00000000   0001111 112222


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH----------HHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172           84 TVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAIL----------CLATNRNHSAWSFKGKIEIISVLYAGIV  153 (256)
Q Consensus        84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~ll~~g~~  153 (256)
                      +...++  +-....+   .++ ..-.+..|.++.+.+..+-+          -....+   ..+...+..|..++.... 
T Consensus       166 iil~~~--il~~~~~---p~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g---~~ql~~~~ty~~~l~~~~-  235 (335)
T KOG2922|consen  166 IILIVL--ILIFFYA---PRY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG---NNQLFYPLTWIFLLVVAT-  235 (335)
T ss_pred             HHHHHH--HHheeec---ccc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC---CcccccHHHHHHHHHHHH-
Confidence            221111  1111122   111 11122333333333321111          111111   112223333555554443 


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchh-hHHHHHHHHHHHHhcccch------hhHHHHHHHHHHHHhhheecc
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSP-LVQIMAAMFDIPLLHERLH------IGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~-l~pv~a~ll~~l~~~E~i~------~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +.....-..|+|++..+++.++.+.+ +-..++++-+.++|+|--.      ....+|+..++.|+.+....|
T Consensus       236 ~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  236 CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence            66666677789999999888876665 4567778888899988533      236778888999988774433

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.71  E-value=0.00038  Score=49.64  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 025172          152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITV  208 (256)
Q Consensus       152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~li  208 (256)
                      +.+.++++.++.+++|+++.+.+ +++.-+..+...+.+++++||++|..+++|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33667889999999999999988 6667799999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0019  Score=49.86  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      ...++.++++++-.+...+..++.+...+|....+..+..+.+.+..+..+.++.. .+.......|+..+ -|+++...
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~-GG~lGa~~   82 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWI-GGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHH-ccchhhhh
Confidence            67788889999999999999999888777898999999999998888887754432 22211222344333 24333222


Q ss_pred             HHHHHHHHHhccCcc-chhhchhhHHHHHHHHHHHHhc----ccchhhHHHHHHHHHHHHhhheec
Q 025172          158 CYVGLTWCVKKKGPV-FTAAFSPLVQIMAAMFDIPLLH----ERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~-~~s~~~~l~pv~a~ll~~l~~~----E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      - ..-.....+++++ ...+...-|-+.+++++-+=+.    .+++...++|++++++|+++....
T Consensus        83 v-t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          83 V-TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             h-hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            2 2223555565554 4466667777888888876654    679999999999999996665443

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.44  E-value=0.0015  Score=57.49  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH-----HhcCCC-CcccccchhHHHHHHH
Q 025172           76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCL-----ATNRNH-SAWSFKGKIEIISVLY  149 (256)
Q Consensus        76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-~~~~~~~~~~~~~ll~  149 (256)
                      ...|+++.+++++||+.+.+-.|+ .+++ + ++.. |- ..+ ++.+++..     +..++. +.....+...+..-+.
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w-~-wE~~-W~-v~g-i~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKW-S-WETM-WS-VGG-IFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCC-c-hhHH-HH-HHH-HHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            358999999999999999999988 4554 2 3333 33 222 22222211     111111 1112123344555566


Q ss_pred             HHHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccc---h----hhHHHHHHHHHHHHhhheecccc
Q 025172          150 AGIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERL---H----IGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       150 ~g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i---~----~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      .|++- .+++..+..++++++.+.. .+-.-++-+.+.+++.+++||-.   +    ..-++|.+++++|+++..+...+
T Consensus        79 ~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         79 FGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            67644 5889999999999998876 55567888999999999999743   2    34778899999999999884433

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.35  E-value=0.0011  Score=55.86  Aligned_cols=78  Identities=13%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      ...+..-++ ...+...+.+.++++.+|+...++..+..+++.+++++++|.+++..||++..+.++|+.+........
T Consensus        17 ~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   17 TLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            333333343 355666788899999999999999999999999999999999999999999999999999988766544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.26  E-value=0.0076  Score=51.21  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhch-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHHhhhe
Q 025172          142 IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS-PLVQIMAAMFDIPLLHERLHIGSL----LGSITVIIGLYILL  216 (256)
Q Consensus       142 ~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~-~l~pv~a~ll~~l~~~E~i~~~~~----iG~~lii~gi~l~~  216 (256)
                      ..+..-+..|++ =.+++..+++++++.+.+++-.++ -++-+.+.++++++|||--+..++    ++.+++++|+++..
T Consensus        43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            446666777874 468999999999999999987776 677778999999999997775543    36788889999998


Q ss_pred             eccccccc
Q 025172          217 WGKNKEMQ  224 (256)
Q Consensus       217 ~~~~~~~~  224 (256)
                      ++++++++
T Consensus       122 ~~~~~~~~  129 (269)
T PF06800_consen  122 YQDKKSDK  129 (269)
T ss_pred             cccccccc
Confidence            87766554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.17  E-value=0.0036  Score=46.03  Aligned_cols=109  Identities=14%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025172           85 VGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTW  164 (256)
Q Consensus        85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~  164 (256)
                      +-+++|+..+-+.|+..+..++.-.- . +.......     ++.     .++      +.    ..+.....+-..|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll~-----n~~------y~----ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LLL-----NPK------YI----IPFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HHH-----hHH------HH----HHHHHHHHHHHHHHH
Confidence            45689999999999988865432221 1 21111111     100     111      11    122233345578889


Q ss_pred             HHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172          165 CVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL  215 (256)
Q Consensus       165 a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~  215 (256)
                      .+++.+-+.+..+ +.+.=+++++.++++.+|..+...++|++++++|+.+.
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9999999998888 59999999999999888889999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.99  E-value=0.0074  Score=50.93  Aligned_cols=133  Identities=13%  Similarity=0.021  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172           79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  158 (256)
                      |.+..+.++++++.+.+=.|+....  |.+.+..+++....+..++..+..+..  .+.  ....+...++      +.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p--~f~--p~amlgG~lW------~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFP--PFY--PWAMLGGALW------ATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCC--cce--eHHHhhhhhh------hcC
Confidence            4567889999999999998876533  556666666665555555555444321  111  1111111111      111


Q ss_pred             HHHHHHHHhccCccch-hhchhhHHHHHHHHHHH-Hhccc-----chhhHHHHHHHHHHHHhhheecccccc
Q 025172          159 YVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIP-LLHER-----LHIGSLLGSITVIIGLYILLWGKNKEM  223 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l-~~~E~-----i~~~~~iG~~lii~gi~l~~~~~~~~~  223 (256)
                      -.+-.-.++.++-... .+....+-+.+-..+.+ +|+++     -.+..++|++++++|..++...|.+++
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~  140 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK  140 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence            1222233333332222 23344455666665544 34432     346689999999999999987766553

The region concerned is approximately 280 residues long.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.0008  Score=57.79  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=95.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172           74 ERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIV  153 (256)
Q Consensus        74 ~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~  153 (256)
                      .++..|..+.+.|.+..+...++.|+..++. ..   .              ..-.+.+...+. ..     ...+.|++
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~-~~---~--------------~~ra~~gg~~yl-~~-----~~Ww~G~l   72 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRA-GA---S--------------GLRAGEGGYGYL-KE-----PLWWAGML   72 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHH-hh---h--------------cccccCCCcchh-hh-----HHHHHHHH
Confidence            4456999999999999999999998877663 21   0              010011111111 11     22345666


Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccccc
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN  225 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~  225 (256)
                      ..+++-.+-+-++...|++.++.+..+..++..+++..+++|++++.-.+|++++++|.++.....+++++.
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i  144 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI  144 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence            677777888888888999999999999999999999999999999999999999999988777665554443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.77  E-value=0.0016  Score=56.68  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             HHHHHHHhhh--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025172           93 WFPIQSYIGK--RYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKG  170 (256)
Q Consensus        93 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~  170 (256)
                      ..+..|+..+  .++-|+..+...+..+.+..+..-.+...+..  +..+...+..++-+|+ .-.++-++-+.++++.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence            3444677777  55677888888777777766655544332211  2223345777777787 44578888899999999


Q ss_pred             ccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          171 PVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       171 ~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      .+..-.+-.++|++++++++++.+|+.+...+.....++.|+.+..+.+
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e  157 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE  157 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc
Confidence            9999999999999999999999999999877777777777776666543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.0016  Score=54.01  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL  157 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  157 (256)
                      ...+.+++=++.|+.......+..   ..|...+ .-..++++++.+..++.-.+  ..   +...+..-+..|.+-+ +
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~-lGtT~GALifaiiv~~~~~p--~~---T~~~~iv~~isG~~Ws-~   71 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKFG---GKPYQQT-LGTTLGALIFAIIVFLFVSP--EL---TLTIFIVGFISGAFWS-F   71 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeecC---CChhHhh-hhccHHHHHHHHHHheeecC--cc---chhhHHHHHHhhhHhh-h
Confidence            356788889999998888775443   2334333 34455555555555443211  11   2233555566777554 7


Q ss_pred             HHHHHHHHHhccCccchhhch-hhHHHHHHHHHHHHhcccchhhHH-H---HHHHHHHHHhhheeccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFS-PLVQIMAAMFDIPLLHERLHIGSL-L---GSITVIIGLYILLWGKN  220 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~-~l~pv~a~ll~~l~~~E~i~~~~~-i---G~~lii~gi~l~~~~~~  220 (256)
                      ++..++++++..+.+++..++ -++-+-+.++++++|||--+..+. +   ..+++++|+++..++++
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            899999999999999987665 467788899999999998887653 3   45777888888877654

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.66  E-value=0.00024  Score=52.47  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172            1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL   44 (256)
Q Consensus         1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~   44 (256)
                      +.|+++++++++++|||++.++      +.+++++++|++++..
T Consensus        69 ~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   69 LSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence            4699999999999999999996      9999999999999873

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.00019  Score=59.33  Aligned_cols=179  Identities=15%  Similarity=0.106  Sum_probs=115.0

Q ss_pred             HHHHHHHhhcccccccccCCcceee---hhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172            6 TFVIALPFGLETVDIKGISGKAKVV---GTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA   82 (256)
Q Consensus         6 ~~l~~~~~~~ek~~~~~~~~~~k~~---g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll   82 (256)
                      +.+++++.++|.-+..+     +.+   ++++.++|+.+...-+...-+                  .++..+...|...
T Consensus       100 ~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~nk~------------------~~~~~n~kkgi~~  156 (288)
T COG4975         100 TSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNNKE------------------EENPSNLKKGIVI  156 (288)
T ss_pred             ceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccccc------------------ccChHhhhhheee
Confidence            45677888999887765     344   456777888887642221000                  2233445689999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 025172           83 LTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGL  162 (256)
Q Consensus        83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  162 (256)
                      .+.|.+.|-.|.+..+...-+.-+.+.-...-+.++++.   +... ..   +..  .....+.-+..|++- +.+-.++
T Consensus       157 L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali---~~~~-~~---~~~--~~K~t~~nii~G~~W-a~GNl~m  226 (288)
T COG4975         157 LLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI---LGFF-KM---EKR--FNKYTWLNIIPGLIW-AIGNLFM  226 (288)
T ss_pred             eeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH---Hhhc-cc---ccc--hHHHHHHHHhhHHHH-HhhHHHH
Confidence            999999999999998755422212232223333333322   2221 11   111  222334444566644 4677788


Q ss_pred             HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHhhhee
Q 025172          163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGS----LLGSITVIIGLYILLW  217 (256)
Q Consensus       163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~----~iG~~lii~gi~l~~~  217 (256)
                      ..+-++.+..+.=.++.+..+++.+-++++++|+=+..+    ++|.+++++|..+.-.
T Consensus       227 l~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         227 LLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            889999998888888999999999999999999988765    5677888888766543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.45  E-value=0.26  Score=43.19  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCC---chhHHHHHHHHHHHHHHHHHHHHhc----CC-C---CcccccchhHHHH
Q 025172           78 FGTIALTVGTLLWASWFPIQSYIGKRYP---CKYSSTAILSLFGAIQAAILCLATN----RN-H---SAWSFKGKIEIIS  146 (256)
Q Consensus        78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~----~~-~---~~~~~~~~~~~~~  146 (256)
                      .-.+.++...+.++......|...++..   .+.+.++..=++-.++.....+...    +. .   .......+.+...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            5567777778888888888887766432   2333444333444444444443321    10 0   0000111111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          147 VLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       147 ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +..-++ ..++..-+++.+..+.+|++..+...+..+.+.++++++++++++..||...++.+.|+.+.+...
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            221121 333444577899999999999999999999999999999999999999999999999999998443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.97  E-value=0.0075  Score=48.47  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      +-+.|..++++++|+.++.+....-.+..+++|+++++++...+++..++.+-|+++..|..+..
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            34778899999999999999999999999999999999999999999999999999998876544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.81  E-value=0.024  Score=46.84  Aligned_cols=131  Identities=11%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhhh-cCC--c--------hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172           88 LLWASWFPIQSYIGK-RYP--C--------KYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG  156 (256)
Q Consensus        88 ~~~a~~~v~~k~~~~-~~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~  156 (256)
                      +||=.|.+.+.++.+ ++.  +        ....++.+|....++.=+...+..... .-   ....+. .....+ ...
T Consensus        23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~-~D---~t~~~~-YaAcs~-sYL   96 (337)
T KOG1580|consen   23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE-ID---NTPTKM-YAACSA-SYL   96 (337)
T ss_pred             heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc-cc---CCcchH-HHHHHH-HHH
Confidence            678888888887766 332  1        244556666666655544433333211 11   111122 222222 455


Q ss_pred             HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172          157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ  224 (256)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~  224 (256)
                      +++..-|.++|..+=-+.-+--+..|+-..++++++.+.+-+|..++-..+|++|+.+..|+++|...
T Consensus        97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            67777899999999777778889999999999999999999999999999999999999998665443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.58  E-value=0.016  Score=51.02  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      +++.+.++.++.+.+++..+++++..-+|++.++.++-+|++++.+.++.++.+.|++++...+.++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            5677888999999999999999999999999999999999999999999999999999998876544

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.45  E-value=0.0025  Score=46.94  Aligned_cols=36  Identities=25%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      .|+++.++++++++||+++++      ++|+.+.++|++++.
T Consensus        73 ~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         73 NFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            578999999999999999995      999999999998764

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.71  E-value=0.26  Score=43.12  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH-HHHHHHHHHHHHHHHH--HhcCCC-CcccccchhHHHHHHHHH
Q 025172           76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSST-AILSLFGAIQAAILCL--ATNRNH-SAWSFKGKIEIISVLYAG  151 (256)
Q Consensus        76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~~~~-~~~~~~~~~~~~~ll~~g  151 (256)
                      -..|+++..+++++.+.+.+=.||.. ++ + ++.. ..+.+++-+ ..|...  +.-++. +.....+...+....+.|
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkvk-~W-s-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKVK-GW-S-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhcC-Cc-c-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            45899999999999999999998773 43 3 3322 222222222 222222  222211 111112223355555567


Q ss_pred             HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcc-------cchhhHHHHHHHHHHHHhhheecccc
Q 025172          152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHE-------RLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E-------~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      ++- +++-..|-.++++++.+.. ++..-+.-+++.++--++.++       +-....++|.+++++|+.+.-+.-.+
T Consensus        81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~  157 (344)
T PF06379_consen   81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM  157 (344)
T ss_pred             HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence            644 4666788899999996653 555566666666666555432       22346899999999999998776433

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK02237 hypothetical protein; Provisional

Probab=94.30  E-value=0.38  Score=34.80  Aligned_cols=45  Identities=11%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +.+.-...+.++++.|.+-|++++.+.++|.+++++|..++.+..
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            666777788899999999999999999999999999998887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=94.14  E-value=3.1  Score=39.11  Aligned_cols=40  Identities=10%  Similarity=0.144  Sum_probs=18.5

Q ss_pred             hchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172          176 AFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL  215 (256)
Q Consensus       176 ~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~  215 (256)
                      +.....|+-+.++|.+.-.-.+.....++++.++++..+.
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3344466667777765433333333333333333443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=2.3  Score=36.96  Aligned_cols=120  Identities=15%  Similarity=0.108  Sum_probs=78.7

Q ss_pred             HHHHHHhhhcCC--chhHHHHHHHHHHHHHHHHHHHHhcCCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025172           94 FPIQSYIGKRYP--CKYSSTAILSLFGAIQAAILCLATNRNHSA--WSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKK  169 (256)
Q Consensus        94 ~v~~k~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~  169 (256)
                      .+..|.....++  ..+....+|.+.+.+.....-...--+.+.  +..........+++.+-+.+      =.++++++
T Consensus        28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t------~~~slk~l  101 (314)
T KOG1444|consen   28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT------GSKSLKYL  101 (314)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH------cccccccc
Confidence            344455555444  334444488887777766655432212222  22111111222333333222      25889999


Q ss_pred             CccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          170 GPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       170 ~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +....+++-..+|+++.+...+++|-+++...+....++++|........
T Consensus       102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d  151 (314)
T KOG1444|consen  102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD  151 (314)
T ss_pred             CchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999987776543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=92.96  E-value=1.3  Score=38.29  Aligned_cols=123  Identities=9%  Similarity=0.087  Sum_probs=85.3

Q ss_pred             HHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccch-hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh
Q 025172           98 SYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS-FKGK-IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTA  175 (256)
Q Consensus        98 k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s  175 (256)
                      |...+.+.=|.-++.+...+-..+....-...+...+.-+ ..+. ...-.+.-.|+ ++++=-.+-|+++++++.+..+
T Consensus        36 ~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSlYT  114 (349)
T KOG1443|consen   36 KWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSLYT  114 (349)
T ss_pred             hhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeeeee
Confidence            3444444445666666666555544444444443211111 1111 12222333444 6777778889999999999999


Q ss_pred             hchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172          176 AFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK  221 (256)
Q Consensus       176 ~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~  221 (256)
                      +.-+..++|-.+++.++-=|++++.-..-..+|-+|+++..+++.+
T Consensus       115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq  160 (349)
T KOG1443|consen  115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ  160 (349)
T ss_pred             eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence            9999999999999999999999999999999999999999887654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=92.82  E-value=0.77  Score=33.18  Aligned_cols=45  Identities=16%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +.+.-...+.++++++.+-+++++.+.++|..++++|+.++.+..
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            566677788899999999999999999999999999998887754

; GO: 0016020 membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.57  E-value=5.1  Score=34.69  Aligned_cols=128  Identities=10%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhh--------cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172           89 LWASWFPIQSYIGK--------RYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV  160 (256)
Q Consensus        89 ~~a~~~v~~k~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  160 (256)
                      .+-.+.++++++..        ++.++.-..+.+.+.+.+........+...     ......|...-+.++ ...++-.
T Consensus        25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~~~apl~~y~~is~-tn~~s~~   98 (327)
T KOG1581|consen   25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-----LSGVAPLYKYSLISF-TNTLSSW   98 (327)
T ss_pred             HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-----CCCCCchhHHhHHHH-HhhcchH
Confidence            33445566655433        334556667777777777664444333221     112234666667776 5567778


Q ss_pred             HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172          161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE  222 (256)
Q Consensus       161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~  222 (256)
                      |.+.++++++=-+-.+.-...-+-.++++.++.+.+.+...++-+.+|-.|+.+..+.+...
T Consensus        99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            88899999997777788888888889999999999999999999999999998888775544

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=92.24  E-value=0.014  Score=48.81  Aligned_cols=138  Identities=10%  Similarity=0.015  Sum_probs=95.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHH
Q 025172           74 ERWTFGTIALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGI  152 (256)
Q Consensus        74 ~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~  152 (256)
                      ...++|..++-.-.+|-......+..+.+++ ..|...++.....-++...++..+...   ...    .-|...+.+++
T Consensus        14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~~----~~~~hYilla~   86 (336)
T KOG2766|consen   14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YIK----AKWRHYILLAF   86 (336)
T ss_pred             hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HHH----HHHHHhhheeE
Confidence            3445666666666666666666666666653 345555565555555555555544331   111    12444555555


Q ss_pred             HHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          153 VGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                       .-+-+-++..+|.|+.+-+.+.++..-..+...+++|++++.+-.+.++.|.+++++|+.+.....
T Consensus        87 -~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD  152 (336)
T KOG2766|consen   87 -VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD  152 (336)
T ss_pred             -EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence             334455566799999999999999999999999999999999999999999999999998887654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=91.28  E-value=8.2  Score=32.65  Aligned_cols=103  Identities=15%  Similarity=0.035  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172           79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC  158 (256)
Q Consensus        79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  158 (256)
                      ...+++.+.++--...-+.|.+-... .+...+.++..+++++++.+.-.+...      .+..+|..++..|+ +.+.-
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPwr~r------~~~~~~~~~~~yGv-sLg~M   84 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPWRRR------LSKPQRLALLAYGV-SLGGM   84 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHHHhc------cChhhhHHHHHHHH-HHHHH
Confidence            56777888887777788888777664 668899999999999887776433321      13345777887887 45555


Q ss_pred             HHHHHHHHhccCccchhhchhhHHHHHHHHH
Q 025172          159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFD  189 (256)
Q Consensus       159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~  189 (256)
                      ..+++.+++++|-..+..+.++-|+.-.+++
T Consensus        85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            5666799999999999999999998776654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=89.33  E-value=0.69  Score=39.52  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172          154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG  218 (256)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~  218 (256)
                      +-..+-.+++.++....++..-+.---..+|+.+++.-++|.+++..+|.|+..+.+|++++-+.
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            44455577788888888888888888889999999999999999999999999999999888655

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=88.81  E-value=0.11  Score=38.79  Aligned_cols=35  Identities=11%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL   44 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~   44 (256)
                      +.++++++++++|++++.+      ++|+.+.++|++.+-.
T Consensus        69 v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         69 LFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence            4578899999999999995      9999999999988753

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=88.37  E-value=0.11  Score=38.22  Aligned_cols=34  Identities=15%  Similarity=0.432  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      +.++++++++++|++++.+      ++|+.+.++|++++-
T Consensus        69 v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~  102 (110)
T PRK09541         69 VLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            3578899999999999995      999999999999874

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=87.98  E-value=2.7  Score=30.21  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      +.+.-...+.++++.+++=|.+++.+.++|..+.++|..++.+..
T Consensus        62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            566777888999999999999999999999999999987777653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=87.55  E-value=0.14  Score=37.53  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceee
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLL   42 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll   42 (256)
                      +.+++.++++++|++++.+      ++|+.+.+.|++.+
T Consensus        74 v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         74 AATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            4578899999999999995      99999999999875

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.33  E-value=1  Score=38.44  Aligned_cols=111  Identities=13%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhcCC-----CCccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhc
Q 025172          105 PCKYSSTAILSLFGAIQAAILCLATNRN-----HSAWSFK--GKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF  177 (256)
Q Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~--~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~  177 (256)
                      +.|.-++.+++++...+..........-     .+..++.  ...+..-+.  -+  -...-.+-++++++.+.+.--+-
T Consensus        59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlpls--vV--fi~mI~fnnlcL~yVgVaFYyvg  134 (347)
T KOG1442|consen   59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLS--VV--FILMISFNNLCLKYVGVAFYYVG  134 (347)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchh--he--eeeehhccceehhhcceEEEEec
Confidence            4678889999999888877776543221     1111111  111111111  11  11223567899999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       178 ~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      -.+..+|++++++++++++-+..-..++.+|+.|..+-...+
T Consensus       135 RsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen  135 RSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             cchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            999999999999999999999999999999999987765543

>PRK11431 multidrug efflux system protein; Provisional

Probab=87.27  E-value=0.16  Score=36.93  Aligned_cols=34  Identities=12%  Similarity=0.099  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      +.+.++++++++|++++.+      ++|+.+.++|++.+-
T Consensus        68 v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~  101 (105)
T PRK11431         68 VGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence            4578899999999999995      999999999998863

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=86.31  E-value=0.17  Score=36.73  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172            4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      +.+++.++++++|+++..      |++++.+.+.|++.+-
T Consensus        69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            457889999999999999      4999999999998763

>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=84.25  E-value=14  Score=33.01  Aligned_cols=116  Identities=18%  Similarity=0.155  Sum_probs=52.8

Q ss_pred             hhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchh--HHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhc
Q 025172          100 IGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKI--EIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF  177 (256)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~  177 (256)
                      +..+..+++....-.+...++-..+.+....+.  ....-...  .-.+.-..++++..+...-+.+..|..++..+..+
T Consensus        60 lA~~vG~~~G~Lina~f~~~iEvil~~~al~~G--~~~lvr~Si~gsIm~~~llv~GlslllGglr~~~Q~fN~~~a~~~  137 (368)
T COG0387          60 LAARVGEPYGSLINALFGNAIEVILIVAALKSG--SPTLVRDSLYGSIMINLLLVVGLSLLLGGLRHKTQPFNPHGAGTY  137 (368)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHHHHHHHHHHHHHcchhhceeecchhhHHHH
Confidence            333444666666666666666555555544432  22211111  11122222332322333334455555555544332


Q ss_pred             hh---hHHHHHHHHHHHHh---cccchhhHHHHHHHHHHHHhhhee
Q 025172          178 SP---LVQIMAAMFDIPLL---HERLHIGSLLGSITVIIGLYILLW  217 (256)
Q Consensus       178 ~~---l~pv~a~ll~~l~~---~E~i~~~~~iG~~lii~gi~l~~~  217 (256)
                      ..   +.-+.++++--++-   +...+..+-.+++.+.+++|....
T Consensus       138 ~~~L~~~~~ialv~P~~~~~~~~~~~~~~~s~~~avv~i~~Y~lfL  183 (368)
T COG0387         138 LALLFTAATIALVLPTFFPYTGGGNFSLGQSLFVAVVLIALYGLFL  183 (368)
T ss_pred             HHHHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHHHHHHH
Confidence            22   22223333333322   234456677778888887776653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=84.01  E-value=0.28  Score=37.11  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             hHHHHHHHHH--hhcccccccccCCcceeehhhheeccceeee
Q 025172            3 PVITFVIALP--FGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         3 P~~~~l~~~~--~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      +.++.+.++.  +++|++++++      ++|+++.++|++++.
T Consensus        85 ~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         85 YALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            3445555553  8999999995      999999999999975

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=82.03  E-value=2.5  Score=30.56  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=43.6

Q ss_pred             HHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172          160 VGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL  216 (256)
Q Consensus       160 ~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~  216 (256)
                      .+|+.-+++.+-+.+..+ +++.-.++.+.+..+-.|......+.|+.++++|+++..
T Consensus        67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            566777888887766544 556778889999875555666679999999999998764

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=81.81  E-value=15  Score=30.57  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172          163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN  220 (256)
Q Consensus       163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~  220 (256)
                      -+++++.+....+++-+++.+.....-.++||.+++..+....+++++..+...|...
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~  143 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ  143 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence            4889999999999999999999999999999999999999999999999888887754

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=81.62  E-value=2.1  Score=30.91  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172          185 AAMFDIPLLHERLHIGSLLGSITVIIGLYIL  215 (256)
Q Consensus       185 a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~  215 (256)
                      -..++++++||++++..+.|.++++.+++..
T Consensus        76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             eHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            3467788999999999999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.3
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.94
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.22
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.02

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.30  E-value=3e-12  Score=96.86  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      ..++++++++|.+|++++++++++++..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35677889999999999999999999888 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.94  E-value=1.1e-08  Score=74.41  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172          149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK  219 (256)
Q Consensus       149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~  219 (256)
                      ..++++.+++|.++.+++++.|.+.+..+ ..+.|+++.+++++++||+++..+++|.++|++|+++....+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35666788999999999999999999877 899999999999999999999999999999999999886643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.22  E-value=0.0022  Score=47.96  Aligned_cols=37  Identities=16%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL   44 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~   44 (256)
                      .|++++++++++++|++++.+      ++|+++.++|++++..
T Consensus        67 ~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           67 GIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            599999999999999999996      9999999999998853

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.02  E-value=0.0025  Score=45.77  Aligned_cols=36  Identities=14%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172            2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT   43 (256)
Q Consensus         2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~   43 (256)
                      .|++++++++++++|++++.+      ++|+.+.+.|++++.
T Consensus        67 ~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           67 GIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            589999999999999999995      999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00