Citrus Sinensis ID: 025184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEEEEccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEEccEEEEEEEEccccEEEEEEEEccEEEEEEEEccHHcHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccHHccccccHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccEEEEcccccEEEEEEEcccccccEEEEEEccccccEEEEEEEHHHHHHcccccccHHHcccHHHHHHHHccHccccccHHHHEEccEEcccccEEEEEEEcccccEEEEEEEccEEEEEEEEccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgttlfssCSFLAQISSVENGISRVKAVAcstgsdsvdgvMKRRSVLVSGASLIssavlgfpadgLAVVKQGLlagrvpglsepdeqgwrtyrrpddksgghgvgwspiipylfsvpqewdevpvsiadlggteidlrfaspkkgrlFVIVAPVlrfaddlgddatiekigppekvinafgpevigenvegkvLSMDVEELcgrkyyryelepphvLITATAAGNRLYLFSVTgnglqwkrHYTDLKKIADSFRVV
Flexible Loop (DISEMBL)
mgttlfssCSFLAQISSVENGISRVKAVAcstgsdsvdgvMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAgrvpglsepdeqgwrTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLrfaspkkgrLFVIVAPVLRFADDLGDDAtiekigppekvinafgpevigenvegkvlSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTgnglqwkrhytdlkkiadsfrvv
Low Complexity Region (SEG)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Disordered region (IsUnstruct)
****LFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVP*********************GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIA******
Disordered Region (DISOPRED)
***********************************************VSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG*VLSMD*EELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Disordered Region (DISEMBL)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Disordered Region (DISPRO)
*GTTLF*SCSFLAQ*********RVKA*AC*TGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
O49292	260	PsbP domain-containing pr	yes	no	0.996	0.980	0.719	1e-100
Q9LXX5	262	PsbP domain-containing pr	no	no	0.800	0.782	0.290	8e-17
P82658	229	Thylakoid lumenal 19 kDa	no	no	0.527	0.589	0.298	3e-08

>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/260 (71%), Positives = 208/260 (80%), Gaps = 5/260 (1%)

Query: 1   MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISS 56
           M T L   C   S   +IS+ +   S +   +     D     V+ RRSV+ SG  + S+
Sbjct: 2   METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSST 60

Query: 57  AVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSV 116
             L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSV
Sbjct: 61  TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSV 120

Query: 117 PQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKV 176
           PQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD  IE IG P KV
Sbjct: 121 PQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKV 180

Query: 177 INAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG 236
           INAFGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG
Sbjct: 181 INAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNG 240

Query: 237 LQWKRHYTDLKKIADSFRVV 256
           LQWKRHY DLK+IA SFR+V
Sbjct: 241 LQWKRHYKDLKRIASSFRIV 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 26/231 (11%)

Query: 42  KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGG 101
           +RR +L+  A  I  A+L      ++  ++  +   +P LS  D        +P D    
Sbjct: 41  RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPAL 98

Query: 102 HGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIV 151
                  + PY F +P  W ++   IA+ L G           I+++F + K+G++ V+ 
Sbjct: 99  RAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVA 153

Query: 152 APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYE 210
           +P++R  +    +ATIE +G PEKVI + GP V G + +  ++L   +E++  + YY+Y 
Sbjct: 154 SPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYV 211

Query: 211 LEPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
           LE P      H L  ATA G+ + LF V+    QW+     L+ I DSF++
Sbjct: 212 LETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

Arabidopsis thaliana (taxid: 3702)

>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 16/151 (10%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
           Y++ VP+ W E  VS  + G    D  F +PKK          L F       A   ++ 
Sbjct: 86  YVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKK----TEKEYLTFL------AGFRQLA 135

Query: 172 PPEKVIN--AFGPEVIGENVEG--KVLSMDVEELCGRKYYRYELEP--PHVLITATAAGN 225
           P + ++N  A     + + + G  KV+S + ++  G+ YY YE++    H LIT T + N
Sbjct: 136 PRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKN 195

Query: 226 RLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
           RLY   V     +W R +  L  + DSF+ V
Sbjct: 196 RLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255570434	270	Thylakoid lumenal 29.8 kDa protein, chlo	1.0	0.948	0.766	1e-114
225457797	279	PREDICTED: psbP domain-containing protei	1.0	0.917	0.731	1e-109
224062948	276	predicted protein [Populus trichocarpa]	1.0	0.927	0.739	1e-108
297842481	256	thylakoid lumenal 29.8 kDa protein [Arab	0.996	0.996	0.747	1e-102
356515973	271	PREDICTED: psbP domain-containing protei	0.980	0.926	0.684	1e-101
217074038	268	unknown [Medicago truncatula]	0.929	0.888	0.733	1e-100
356509330	267	PREDICTED: psbP domain-containing protei	0.917	0.880	0.742	1e-100
449443776	267	PREDICTED: psbP domain-containing protei	1.0	0.958	0.689	1e-100
357463687	268	PsbP domain-containing protein [Medicago	0.929	0.888	0.729	1e-100
255646927	267	unknown [Glycine max]	0.917	0.880	0.738	1e-99

>gi|255570434|ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/270 (76%), Positives = 227/270 (84%), Gaps = 14/270 (5%)

Query: 1   MGTTLFSSCSF--------------LAQISSVENGISRVKAVACSTGSDSVDGVMKRRSV 46
           MGTT+F+SCSF              L   SS E G+SR++A       +   G++KRRS 
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIGLLKRRSA 60

Query: 47  LVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGW 106
           LVSG SL SS +LGFP DGLA VKQGLLAGR+PGLSEPDEQGWRTYRRPDDKSGGHGVGW
Sbjct: 61  LVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGVGW 120

Query: 107 SPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDAT 166
           SPIIPY F VPQEW+EVPVSIADLGGTEIDLRF+S K+GRLFVIVAPVLRFADDLGD+AT
Sbjct: 121 SPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIVAPVLRFADDLGDNAT 180

Query: 167 IEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNR 226
           IE+IGPPEKVINAFGPEVIGENVEGKVLSM+V E  GR YY++ELEPPHVLITATAAGNR
Sbjct: 181 IERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFELEPPHVLITATAAGNR 240

Query: 227 LYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
           LYLFSVTGNGLQWKRHY DLK+IA+SFRVV
Sbjct: 241 LYLFSVTGNGLQWKRHYKDLKRIAESFRVV 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457797|ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] gi|302142754|emb|CBI19957.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/279 (73%), Positives = 225/279 (80%), Gaps = 23/279 (8%)

Query: 1   MGTTLFSSCSF-------------LAQISSVENGISRVKAVACSTGSDSVD--------- 38
           MGT++F+SCSF                 SS + G+S  KA   +  +  V+         
Sbjct: 1   MGTSIFTSCSFSWRNHHHIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVEFVDEETEKF 60

Query: 39  -GVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDD 97
            G +KRRS +VSG SLISSAVLGFP +GLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPD+
Sbjct: 61  SGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDE 120

Query: 98  KSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRF 157
           KSGGHGVGWSPIIPY+FSVP  W+EVPVSIADLGGTEIDLRFA+ K+GRLFVIVAPVLRF
Sbjct: 121 KSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRF 180

Query: 158 ADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVL 217
           AD+LGDDA +EKIGPPEKVI AFGPEVIGENVEGKVLSM V E  GR YY++ELEPPHVL
Sbjct: 181 ADNLGDDAKVEKIGPPEKVIAAFGPEVIGENVEGKVLSMGVVEHSGRTYYQFELEPPHVL 240

Query: 218 ITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
           ITATAAGNRLYLFSVT +GLQWKRHY DLKKIADSFRVV
Sbjct: 241 ITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRVV 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062948|ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/276 (73%), Positives = 225/276 (81%), Gaps = 20/276 (7%)

Query: 1   MGTTLFSSCSFL-----AQI--------SSVENGISRVKAVACSTGSDSVDG-------V 40
           MGTTL +SC         QI         S E+  SR K  A S  +  +DG        
Sbjct: 1   MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQESFPSRAKITAESRKNGFLDGENEKSAGF 60

Query: 41  MKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSG 100
           +KRRSVLVSG SL+S++VLG   +GLAVVKQGLLAGR+PGLSEPD+QGWRTYRRPDDKSG
Sbjct: 61  LKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPDDQGWRTYRRPDDKSG 120

Query: 101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADD 160
           GHGVGWSPIIPYLFSVPQ W+EVPVSIADLGGTEIDLRF S K+GRLFVIVAPVLRFAD 
Sbjct: 121 GHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVLRFADY 180

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITA 220
           LG++ATIE+IGPPEKVINAFGPEVIGENVEGKVLSM+VEE  GR+YY+YELEPPH LITA
Sbjct: 181 LGENATIEQIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRRYYQYELEPPHALITA 240

Query: 221 TAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
           TAAGNRLYLF+VTGNGLQWKRHY DLK+IA SFRVV
Sbjct: 241 TAAGNRLYLFNVTGNGLQWKRHYQDLKRIAYSFRVV 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842481|ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297334963|gb|EFH65381.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/257 (74%), Positives = 206/257 (80%), Gaps = 2/257 (0%)

Query: 1   MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISSAVL 59
           M T L   C F          IS    V   T  D      + RRSVL SG SL+SS  L
Sbjct: 1   METALLRYC-FNFSSHPYHKKISAHHRVDGETQRDERCATALSRRSVLASGFSLVSSTAL 59

Query: 60  GFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQE 119
            FP DGLAVVKQGLLAGRVPGLSEPD++GWRTYRRPD+KSGGHGVGWSPIIPY FSVPQ+
Sbjct: 60  VFPGDGLAVVKQGLLAGRVPGLSEPDDEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQD 119

Query: 120 WDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINA 179
           W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD  IE IGPP KVINA
Sbjct: 120 WNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGPPAKVINA 179

Query: 180 FGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQW 239
           FGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLITATAAGNRLYLFSVTGNGLQW
Sbjct: 180 FGPEVIGENVEGKVLSSNVAEHEGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQW 239

Query: 240 KRHYTDLKKIADSFRVV 256
           KRHY DLK+IA SFR+V
Sbjct: 240 KRHYKDLKRIASSFRIV 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515973|ref|XP_003526671.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/276 (68%), Positives = 217/276 (78%), Gaps = 25/276 (9%)

Query: 1   MGTTLFSSCSFLAQ------------ISSVENGISRVKAVACSTGSD-SVDG-------V 40
           M TT  S+ S L +              +++NG  R    A ++  + S++        +
Sbjct: 1   MATTALSTTSVLCRRKPQHMHIILPSSQTLQNGTLRTDVTASASKDNISIESEKCCSSLL 60

Query: 41  MKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSG 100
           + RR+VL SG SL     LGFP + LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSG
Sbjct: 61  VNRRTVLASGVSL-----LGFPGESLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSG 115

Query: 101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADD 160
           GHGVGWSPIIPY F VP+EW+EVPVSIADLGGTEIDLRFAS K+GRLFVIVAPVLRF+DD
Sbjct: 116 GHGVGWSPIIPYSFRVPKEWEEVPVSIADLGGTEIDLRFASSKEGRLFVIVAPVLRFSDD 175

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITA 220
           LGD+ATIEKIGPPEKVINAFGPE+IGENVEGKVLS +V E  GR YY++ELEPPH+ ITA
Sbjct: 176 LGDNATIEKIGPPEKVINAFGPEMIGENVEGKVLSANVAEHEGRTYYQFELEPPHIFITA 235

Query: 221 TAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
           TAAGNRLYLF VTG+GLQWKRHY DLKKIA+SFRVV
Sbjct: 236 TAAGNRLYLFGVTGSGLQWKRHYDDLKKIAESFRVV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074038|gb|ACJ85379.1| unknown [Medicago truncatula]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/251 (73%), Positives = 208/251 (82%), Gaps = 13/251 (5%)

Query: 14  QISSVENGISRVKAVACSTGSDSVDG--------VMKRRSVLVSGASLISSAVLGFPADG 65
           Q  SV+N +SR    + S GS S++         +  RR++L SG SL     LGFP   
Sbjct: 23  QPCSVKNEVSRTMHASVSIGSLSINEESDKCSSLLANRRAILASGVSL-----LGFPGVS 77

Query: 66  LAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPV 125
           LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VPQEW+EVPV
Sbjct: 78  LAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPV 137

Query: 126 SIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI 185
           SIADLGGTE+DLRF+S K+GRLFVIVAPVLRF+D +GDDATIEKIGPP+KVI+AFGPE+I
Sbjct: 138 SIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDIIGDDATIEKIGPPDKVISAFGPEMI 197

Query: 186 GENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTD 245
           GENVEGKVLS +V E  GR YY++ELEPPH+ ITATAAGNRLYLF VTGNGLQWKRHY D
Sbjct: 198 GENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYND 257

Query: 246 LKKIADSFRVV 256
           LKKI+DSFRVV
Sbjct: 258 LKKISDSFRVV 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509330|ref|XP_003523403.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/245 (74%), Positives = 206/245 (84%), Gaps = 10/245 (4%)

Query: 17  SVENGISRVKAVACSTG----SDSVDGVM-KRRSVLVSGASLISSAVLGFPADGLAVVKQ 71
           +++NG  R  A + S      SD    ++  RR++L SG SL+S     FP + LAVVKQ
Sbjct: 28  TLQNGTLRTVAASASKDISIESDKCSSLLVNRRTILASGVSLLS-----FPGESLAVVKQ 82

Query: 72  GLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLG 131
           GLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VP+EW+EVPVSIADLG
Sbjct: 83  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYSFRVPEEWEEVPVSIADLG 142

Query: 132 GTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG 191
           GTEIDLRFAS K+GRLFVIVAPVLRF+DDLGD+ATIEKIGPPEKVINAFGPE+IGENVEG
Sbjct: 143 GTEIDLRFASSKEGRLFVIVAPVLRFSDDLGDNATIEKIGPPEKVINAFGPEMIGENVEG 202

Query: 192 KVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIAD 251
           KVLS+   E  GR YY++ELEPPH+ ITATAAGNRLYLF VTG+GLQWKRHY DLKKIA+
Sbjct: 203 KVLSVSAAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGSGLQWKRHYNDLKKIAE 262

Query: 252 SFRVV 256
           SFRVV
Sbjct: 263 SFRVV 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443776|ref|XP_004139653.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Cucumis sativus] gi|449475456|ref|XP_004154459.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Cucumis sativus]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/267 (68%), Positives = 210/267 (78%), Gaps = 11/267 (4%)

Query: 1   MGTTLFSSCSFLA----------QISSVENGISRVKAVACSTGSDSVDGV-MKRRSVLVS 49
           MGTTLF +  F +           +        RV AV  +   + +    + RR  LVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 50  GASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPI 109
           G SL+SSA LG   D LA VKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 110 IPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEK 169
           IPY FSVPQ+W+EVPVSIADLGGTEIDLRF S K+GR+FV+VAPV RF+D +G+DATIE 
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 170 IGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYL 229
           +GPPEKVINAFGPEVIGENVEGKV+SM V E  GR YY++ELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 230 FSVTGNGLQWKRHYTDLKKIADSFRVV 256
           F+VT NGLQWKRHY DLK+IADSFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463687|ref|XP_003602125.1| PsbP domain-containing protein [Medicago truncatula] gi|355491173|gb|AES72376.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/251 (72%), Positives = 207/251 (82%), Gaps = 13/251 (5%)

Query: 14  QISSVENGISRVKAVACSTGSDSVDG--------VMKRRSVLVSGASLISSAVLGFPADG 65
           Q  SV+N +SR    + S  S S++         +  RR++L SG SL     LGFP   
Sbjct: 23  QPCSVKNEVSRTMHASVSIDSLSINEESDKCSSLLANRRAILASGVSL-----LGFPGVS 77

Query: 66  LAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPV 125
           LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VPQEW+EVPV
Sbjct: 78  LAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPV 137

Query: 126 SIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI 185
           SIADLGGTE+DLRF+S K+GRLFVIVAPVLRF+D +GDDATIEKIGPP+KVI+AFGPE+I
Sbjct: 138 SIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDIIGDDATIEKIGPPDKVISAFGPEMI 197

Query: 186 GENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTD 245
           GENVEGKVLS +V E  GR YY++ELEPPH+ ITATAAGNRLYLF VTGNGLQWKRHY D
Sbjct: 198 GENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYND 257

Query: 246 LKKIADSFRVV 256
           LKKI+DSFRVV
Sbjct: 258 LKKISDSFRVV 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646927|gb|ACU23933.1| unknown [Glycine max]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/245 (73%), Positives = 205/245 (83%), Gaps = 10/245 (4%)

Query: 17  SVENGISRVKAVACSTG----SDSVDGVM-KRRSVLVSGASLISSAVLGFPADGLAVVKQ 71
           +++NG  R  A + S      SD    ++  RR++L SG SL+S     FP + LAVVKQ
Sbjct: 28  TLQNGTLRTVAASASKDISIESDKCSSLLVNRRTILASGVSLLS-----FPGESLAVVKQ 82

Query: 72  GLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLG 131
           GLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VP+EW+EVPVSIADLG
Sbjct: 83  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYSFRVPEEWEEVPVSIADLG 142

Query: 132 GTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG 191
           GTEIDLRFAS K+GRLFVIVAPVLRF+DDLGD+ATIEKIGPPEKVINAFGPE+IGENVEG
Sbjct: 143 GTEIDLRFASSKEGRLFVIVAPVLRFSDDLGDNATIEKIGPPEKVINAFGPEMIGENVEG 202

Query: 192 KVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIAD 251
           KVLS+   E  GR YY++ELEPPH+ ITATAAGNRLYLF VTG+G QWKRHY DLKKIA+
Sbjct: 203 KVLSVGAAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGSGFQWKRHYNDLKKIAE 262

Query: 252 SFRVV 256
           SFRVV
Sbjct: 263 SFRVV 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2025292	260	AT1G77090 [Arabidopsis thalian	0.839	0.826	0.825	1.6e-93
TAIR|locus:2102544	262	PPD6 "PsbP-domain protein 6" [	0.804	0.786	0.282	9.5e-18

TAIR|locus:2025292 AT1G77090 [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 180/218 (82%), Positives = 195/218 (89%)

Query:    40 VMKRRSVLVSGASLISSAV-LGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDK 98
             V+ RRSV+ SG  L+SS   L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+K
Sbjct:    45 VLSRRSVMASG--LVSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEK 102

Query:    99 SGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFA 158
             SGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFA
Sbjct:   103 SGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFA 162

Query:   159 DDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLI 218
             D+LGDD  IE IG P KVINAFGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLI
Sbjct:   163 DNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLI 222

Query:   219 TATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
             TATAAGNRLYLFSVTGNGLQWKRHY DLK+IA SFR+V
Sbjct:   223 TATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2102544 PPD6 "PsbP-domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 65/230 (28%), Positives = 117/230 (50%)

Query:    42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYR-RPDDKSG 100
             +RR +L+  A  I  A+L      ++  ++  +   +P LS P +  +  ++ +P D   
Sbjct:    41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LS-PSDPSFVLFKAKPSDTPA 97

Query:   101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGG------TE--IDLRFASPKKGRLFVIVA 152
                     + PY F +P  W ++ ++    G        E  I+++F + K+G++ V+ +
Sbjct:    98 LRA---GNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVAS 154

Query:   153 PVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYEL 211
             P++R  +    +ATIE +G PEKVI + GP V G + +  ++L   +E++  + YY+Y L
Sbjct:   155 PLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVL 212

Query:   212 EPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
             E P      H L  ATA G+ + LF V+    QW+     L+ I DSF++
Sbjct:   213 ETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       256   0.00086  114 3  11 22  0.48    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  187 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.82u 0.13s 21.95t   Elapsed:  00:00:01
  Total cpu time:  21.82u 0.13s 21.95t   Elapsed:  00:00:01
  Start:  Thu May  9 20:08:23 2013   End:  Thu May  9 20:08:24 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49292	PPD4_ARATH	No assigned EC number	0.7192	0.9960	0.9807	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014308001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036935001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (188 aa)				•			•		0.497
	GSVIVG00032533001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (266 aa)				•			•		0.494
	GSVIVG00018736001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (338 aa)				•			•		0.454
	GSVIVG00036435001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (557 aa)				•			•		0.434
	GSVIVG00001491001	SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_117, whole genome shot [...] (119 aa)				•			•		0.432
	GSVIVG00002933001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (184 aa)				•			•		0.427
	GSVIVG00014078001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (220 aa)				•			•		0.428
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.423
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.420
	GSVIVG00019374001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (522 aa)				•			•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	1e-141
PLN00067	263	PLN00067, PLN00067, PsbP domain-containing protein	4e-23
pfam01789	163	pfam01789, PsbP, PsbP	1e-05
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	0.002

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score =  397 bits (1022), Expect = e-141
 Identities = 170/235 (72%), Positives = 192/235 (81%), Gaps = 3/235 (1%)

Query: 23  SRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLS 82
           +          ++ V   + RRS L SGA+  SSAVL FP +GLAV KQGLLAGRVPGLS
Sbjct: 27  TNRAVRIADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAV-KQGLLAGRVPGLS 85

Query: 83  EPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP 142
           EPDE GWRTYRRP+ KSGGHGVGWS I PY F VPQ W+EVPVSIADLGGTEIDLRFAS 
Sbjct: 86  EPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASD 145

Query: 143 KKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV-EGKVLSMDVEEL 201
           K+GRL V+VAPVLRFAD+LGD+ATIE+IGPPEKVI+ FGPE+IGE V EGKVLSM+V E 
Sbjct: 146 KEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEH 205

Query: 202 CGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV 256
            GR YY++EL PPH L+TATAAGNR+Y+FSVT NGLQWKRHY DLK+IA SFRVV
Sbjct: 206 SGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV 259

Length = 262

>gnl|CDD|177697 PLN00067, PLN00067, PsbP domain-containing protein 6; Provisional

 Score = 94.6 bits (235), Expect = 4e-23
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 21/162 (12%)

Query: 111 PYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIVAPVLRFADD 160
           PY F +P  W      +A+ L G           ++++F   K+G++ V+ +P++R  + 
Sbjct: 106 PYQFILPPTWK--QTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK 163

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVE-GKVLSMDVEELCGRKYYRYELEPP----- 214
              +ATIE+IG PEK+I + GP V G + +  ++L   VE++  + YY+Y LE P     
Sbjct: 164 --PNATIEEIGSPEKLIASLGPFVTGNSYDPDELLETSVEKIGDQTYYKYVLETPFALTG 221

Query: 215 -HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
            H L  ATA GN + LF V+ +  QW+     LK I DSF+ 
Sbjct: 222 SHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA 263

Length = 263

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLGDDATIEK 169
           Y F  P  W    VS     G   D+ F         + V+++PV           ++E 
Sbjct: 20  YEFLYPTGWWREVVS----DG--PDVVFHDLIESDENVSVVISPV-------DKKKSLED 66

Query: 170 IGPPEKVINAFGPEVIGE---NVEGKVLSMDVEELCGRKYYRYELE-------PPHVLIT 219
           +G PE+V       V+       E ++L     E+ G+ YY  E           H L T
Sbjct: 67  LGSPEEVGERLLRGVLAPEGSGREAELLEASEREVDGKTYYDLEYLVRLADGGDRHELAT 126

Query: 220 ATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
            T    +LY  +   N  +W +     +++ DSF V
Sbjct: 127 VTVDRGKLYTLAAQTNEKRWFKVKKLFERVVDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 42/173 (24%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFAS--PKKGRLFVIVAPVLRFADDLGDDATIEK 169
           +   VP +W+  P    +  G    LRF         L V+V P         D  +I  
Sbjct: 100 FKLLVPSKWN--PSKEREFPGQ--VLRFEDNFDATSNLSVMVTPT--------DKKSITD 147

Query: 170 IGPPEKVINA----FGPEV-IGENV-EG----------KVLSMDVEELCGRKYYRYELEP 213
            G PE+ ++      G +   GE   EG           VL    +E+ G+ YY   +  
Sbjct: 148 YGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLT 207

Query: 214 ---------PHVLITATAAGNRLYLFSVTGNGLQW-KRHYTDLKKIADSFRVV 256
                     H LITAT +  +LY+        +W K     ++  A SF V 
Sbjct: 208 RTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 260

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.74
PRK11615	185	hypothetical protein; Provisional	94.65
COG5435	147	Uncharacterized conserved protein [Function unknow	92.48
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	82.92

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=3.8e-67  Score=472.01  Aligned_cols=225  Identities=76%  Similarity=1.253  Sum_probs=210.2

Q ss_pred             ecCCCCCccccchhHHHHHHHHHHHhhhhccCCCCchhhhhhhcccCCCCCCCCCCCCCceeeeccCCCCCCCCCCCccc
Q 025184           30 CSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPI  109 (256)
Q Consensus        30 ~~~~~~~~~~~~sRR~aL~~~~~~~a~~~~~~p~~a~a~~~~g~~A~~~pg~s~~~~~gf~~y~~p~d~~gg~g~~~~~~  109 (256)
                      |..+.++..+.++||++|+++++++...++++|+++.|+ .||++||++||||+|++.||++|+||++++|||||||++|
T Consensus        34 ~~~~~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~-~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i  112 (262)
T PLN00066         34 ADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAV-KQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEI  112 (262)
T ss_pred             cchhhhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhh-hhcccccCCCCCCCccccceEEEecCccccCcCCCCcccc
Confidence            445556667789999999988876566667899988773 7999999999999999999999999999999999999999


Q ss_pred             cceEEecCCCCeecccccccCCCCceeEEEeCCCCCeEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccCCCc
Q 025184          110 IPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV  189 (256)
Q Consensus       110 ~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~~  189 (256)
                      +||+|+||+||+|++|+++|++++++|+||.|+.++||+|+|+|++||+++++++++|+|||+||+|++.|+++++|.+.
T Consensus       113 ~~Y~F~yP~GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~  192 (262)
T PLN00066        113 TPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPV  192 (262)
T ss_pred             CCeEEECCCCCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999998655899999999999999999999998887


Q ss_pred             -ccceeEeeeEEEcCeeeEEEEEcCCceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhccccC
Q 025184          190 -EGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV  256 (256)
Q Consensus       190 -~a~ll~a~~r~~dG~~YY~yEl~~pH~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrvv  256 (256)
                       +++|+++++++.||++||+||| .+|+|++|||++||||+|++++||+||+|++++|++|++||+|+
T Consensus       193 ~e~eLl~a~~re~dGktYY~~E~-~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        193 EEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             cccceeEeeeeecCCcEEEEEEE-eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence             7999999999999999999999 68999999999999999999999999999999999999999985

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=1.7e-46  Score=335.73  Aligned_cols=202  Identities=32%  Similarity=0.580  Sum_probs=169.1

Q ss_pred             cchhHHHHHHHHHHHhhhhccCCCCchhhhhhhcccCCCCCCCCCCCCCceeee-----ccCCCCCCCCCCCccccceEE
Q 025184           40 VMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYR-----RPDDKSGGHGVGWSPIIPYLF  114 (256)
Q Consensus        40 ~~sRR~aL~~~~~~~a~~~~~~p~~a~a~~~~g~~A~~~pg~s~~~~~gf~~y~-----~p~d~~gg~g~~~~~~~~Ysf  114 (256)
                      ...||+.|.|++.+...+++..|.....++..|.+.+..|     +.+||..|+     +|.-+.|       +|.+|+|
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~-----~~~~~~~f~~~~~~tpalra~-------~i~gY~F  109 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSP-----SDPSFVLFKASPKDTPALRAG-------NVQPYQF  109 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCC-----CCCceEEEecCCCCCcccccC-------CcccceE
Confidence            4689999998776322222223332334567788875554     448999994     6666666       5899999


Q ss_pred             ecCCCCeecccccccCC--------CCceeEEEeCCCCCeEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccC
Q 025184          115 SVPQEWDEVPVSIADLG--------GTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIG  186 (256)
Q Consensus       115 ~~P~gW~e~~vs~~D~~--------~~g~d~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g  186 (256)
                      .||++|++++|+++-.|        .+|+|++|+|+.++||+|+|+|+.|+++  .++++|+|||+||+|+++|++.++|
T Consensus       110 lyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~dgnVSVIVSPV~r~t~--k~~~sIeDlGsPeeVl~~Lg~~v~g  187 (263)
T PLN00067        110 ILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTN--KPNATIEEIGSPEKLIASLGPFVTG  187 (263)
T ss_pred             eCCCCCcCccccccccCccccccccCCCceEEEeCCCCCCEEEEEeccccccc--CCCCChHHccCHHHHHHHhhHHhhc
Confidence            99999999999876333        2589999999999999999999999886  5789999999999999999999997


Q ss_pred             CCc-ccceeEeeeEEEcCeeeEEEEEcCC------ceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184          187 ENV-EGKVLSMDVEELCGRKYYRYELEPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       187 ~~~-~a~ll~a~~r~~dG~~YY~yEl~~p------H~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      .+. +++||++++++.||++||+|||..|      |+|+++||++||||||+++++|+||+|+++.|++|++||+|
T Consensus       188 ~~~~~~eLLeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        188 NSYDPDELLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             CCCCCcceEEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            554 5899999999999999999999765      99999999999999999999999999999999999999986

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.9e-44  Score=323.07  Aligned_cols=203  Identities=27%  Similarity=0.434  Sum_probs=162.0

Q ss_pred             cCccceeeeeecCCCCCccccchhHHHHHHHHHHHhhhhccCCCCchhhhhhhcccCCCCCCCCCCCCCceeeeccCCCC
Q 025184           20 NGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKS   99 (256)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~sRR~aL~~~~~~~a~~~~~~p~~a~a~~~~g~~A~~~pg~s~~~~~gf~~y~~p~d~~   99 (256)
                      ...+++..+.|.++.++. ..++||.+|+.++++++...-..|+.    ++||+.| +++|. ..+..||.+|   .  .
T Consensus        30 ~~~~~~~~~~~~~~~~~~-~~~srr~~l~~~~ga~a~~~~~~pa~----aay~~~a-nvfg~-~k~~~gF~~y---~--~   97 (260)
T PLN00042         30 VSASRPSQVVCRAQEEDN-SAVSRRAALALLAGAAAAGAKVSPAN----AAYGESA-NVFGK-PKTNTGFLPY---N--G   97 (260)
T ss_pred             cCCCCCcceeeecccccc-ccccHHHHHHHHHHHHHhhcccCchh----hhhcchh-hccCC-CCCCCCCeEe---e--C
Confidence            334478899999987654 55799999987777544444345654    5899998 58872 2344999999   3  4


Q ss_pred             CCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCcccccccCCHHHHH
Q 025184          100 GGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDDATIEKIGPPEKVI  177 (256)
Q Consensus       100 gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~  177 (256)
                      ||          |+|.||++|+++.+.    +..|+|++|+|+++  +||+|+|+|+        ++++|+|||+|||++
T Consensus        98 dg----------Y~FlyP~~W~~~ke~----~~~G~dv~f~D~~~~~eNVSV~Ispt--------~k~sI~dlGsPee~l  155 (260)
T PLN00042         98 DG----------FKLLVPSKWNPSKER----EFPGQVLRFEDNFDATSNLSVMVTPT--------DKKSITDYGSPEEFL  155 (260)
T ss_pred             CC----------eEEecCCCCcccccc----ccCCceEEeeccccccccEEEEEecC--------CcCCHhhcCCHHHHH
Confidence            77          999999999977653    33688999999987  5999999994        568999999999965


Q ss_pred             HHh----Ccccc-CC---------C--cccceeEeeeEEEcCeeeEEEEEcC---------CceEEEEEEeCCEEEEEEE
Q 025184          178 NAF----GPEVI-GE---------N--VEGKVLSMDVEELCGRKYYRYELEP---------PHVLITATAAGNRLYLFSV  232 (256)
Q Consensus       178 ~~l----~~~~~-g~---------~--~~a~ll~a~~r~~dG~~YY~yEl~~---------pH~L~satv~~GrLYtl~~  232 (256)
                      +.+    +++++ ++         +  .+++|+++++++.||++||+|||..         +|+|+++||+|||||||++
T Consensus       156 ~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~a  235 (260)
T PLN00042        156 SKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKA  235 (260)
T ss_pred             HHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEEe
Confidence            554    44434 22         1  1468999999999999999999942         3999999999999999999


Q ss_pred             ecCccchHhh-hHHHHHHhhccccC
Q 025184          233 TGNGLQWKRH-YTDLKKIADSFRVV  256 (256)
Q Consensus       233 ~a~e~rW~k~-~~~Lr~v~~SFrvv  256 (256)
                      ++||+||+|+ ++.|++|++||+|.
T Consensus       236 qa~EkRW~K~~~k~l~~v~~SFsVa  260 (260)
T PLN00042        236 QAGDKRWFKGARKFVEGAASSFSVA  260 (260)
T ss_pred             cCchhhhhHHHHHHHHHHHhceecC
Confidence            9999999998 66899999999973

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=5.5e-41  Score=300.41  Aligned_cols=196  Identities=26%  Similarity=0.383  Sum_probs=156.5

Q ss_pred             cccccCccceeeeeecCCCCCccccchhHHHHHHHHHHHhhhh---ccCCCCchhhhhhhcccCCCCCCCCCCCCCceee
Q 025184           16 SSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAV---LGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTY   92 (256)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~sRR~aL~~~~~~~a~~~---~~~p~~a~a~~~~g~~A~~~pg~s~~~~~gf~~y   92 (256)
                      +.-..++-.|.++.|..+.+... .++||.+|+..+. ++.++   ..+|.         ++|  .|       +||+.|
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~-~~~rr~~~~~~l~-~~~~~~s~~~~~~---------a~a--~~-------~~l~~y  112 (286)
T PLN00059         53 SAKSAKPDSPVAINCLTDAKQVC-AVGRRKSMMMGLL-MSGLIVSEANLPT---------AFA--SI-------PVFREY  112 (286)
T ss_pred             cccccCCCCCeeeecccchhhhh-hhhhhhhhHHHHH-HHHHHHHhhcCch---------hhc--CC-------ccccee
Confidence            33334445689999999977654 4589998663221 12222   12331         122  13       689999


Q ss_pred             eccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCccccccc
Q 025184           93 RRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDDATIEKI  170 (256)
Q Consensus        93 ~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~~sI~dl  170 (256)
                         .|+.||          |+|.||.||.++.+.       |.|+.|+|+++  +||+|+|+|+..     +++++|+||
T Consensus       113 ---~D~~DG----------Y~FlYP~GWi~V~~~-------G~DVvFrD~Ie~~ENVSV~ISs~ss-----s~~~sLeDL  167 (286)
T PLN00059        113 ---IDTFDG----------YSFKYPQNWIQVRGA-------GADIFFRDPVVLDENLSVEFSSPSS-----SKYTSLEDL  167 (286)
T ss_pred             ---EcCCCC----------eEEeCCCCCeEeccC-------CCceEEeccCccccceEEEEecCCc-----ccCCChHHc
Confidence               999999          999999999998864       56679999998  599999998611     257999999


Q ss_pred             CCHHHHHHHhCccccCC--------CcccceeEeeeEEE-cCeeeEEEEEc--C---------------------CceEE
Q 025184          171 GPPEKVINAFGPEVIGE--------NVEGKVLSMDVEEL-CGRKYYRYELE--P---------------------PHVLI  218 (256)
Q Consensus       171 Gspeev~~~l~~~~~g~--------~~~a~ll~a~~r~~-dG~~YY~yEl~--~---------------------pH~L~  218 (256)
                      |+|+||+++|+.+++++        .++++||++++|+. ||++||+|||.  +                     +|+|+
T Consensus       168 GsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA  247 (286)
T PLN00059        168 GSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLA  247 (286)
T ss_pred             CCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEE
Confidence            99999999999888765        24799999999975 99999999984  2                     39999


Q ss_pred             EEEEeCCEEEEEEEecCccchHhhhHHHHHHhhccccC
Q 025184          219 TATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV  256 (256)
Q Consensus       219 satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrvv  256 (256)
                      +++|.|||||||++|+||+||.|+++.|++|++||+|+
T Consensus       248 ~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        248 VLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             EEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence            99999999999999999999999999999999999985

>PLN03152 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-36  Score=261.98  Aligned_cols=223  Identities=22%  Similarity=0.331  Sum_probs=164.1

Q ss_pred             CCccccccccccccccccccCccceeeeeecCCCCCccccchhHHHHHHHHHHHhhhhccCCCCchhhhhhhccc---CC
Q 025184            1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLA---GR   77 (256)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sRR~aL~~~~~~~a~~~~~~p~~a~a~~~~g~~A---~~   77 (256)
                      |-.+|.|+++-.-.++...+.++.+ ..+         ...+||++++..+.+++..+.+ +.+.    .++..-   ..
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~---------~~~~~r~~~~~t~~~~~~~~~~-~~~~----~~~~~~~~~~~   65 (241)
T PLN03152          1 MAALLLSLSPHPPNPQNPNPRKPKP-LSR---------CGASRRDFILHTASLCASSLAA-QNPL----PPSLADPSKPS   65 (241)
T ss_pred             CceeEeecCCCCCCCCCCCCCCCCc-ccc---------ccccccceeeehhHHHHhhhhc-CCCC----CccccCCCCCC
Confidence            5566777776644444444444333 222         2347999998777655443332 2211    111111   23


Q ss_pred             CCCCCC-CCCCCceeeeccCCCCCCCCCCCccccceEEecCCCCeeccccc---------ccC-CCCceeEEEeCCCC-C
Q 025184           78 VPGLSE-PDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSI---------ADL-GGTEIDLRFASPKK-G  145 (256)
Q Consensus        78 ~pg~s~-~~~~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~---------~D~-~~~g~d~rF~d~~~-~  145 (256)
                      .|.++. +++..|..|     .++|          |++.||++|+++....         .|+ +-..+.+||.++++ +
T Consensus        66 ~~~~~~~~nt~~w~~~-----~g~g----------f~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sE  130 (241)
T PLN03152         66 KPLLSGIANTKSWFQF-----YGDG----------FSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSE  130 (241)
T ss_pred             Cchheeeecchhhhhh-----hCCc----------eEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCc
Confidence            455554 788888888     3677          9999999999766431         111 12567899999987 6


Q ss_pred             eEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccCCCc-ccceeEeeeEEEcCeeeEEEEEcC--CceEEEEEE
Q 025184          146 RLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV-EGKVLSMDVEELCGRKYYRYELEP--PHVLITATA  222 (256)
Q Consensus       146 ~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~~-~a~ll~a~~r~~dG~~YY~yEl~~--pH~L~satv  222 (256)
                      ||||+|+|+++|+.+|.++++|+|||+|+||++.|+|.  |..+ .++.++. .++.+||+||+|||..  .|+|++|+|
T Consensus       131 nVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP~--g~~~~saR~iel-~~E~dGKtYY~lEy~v~~RH~LaTVaV  207 (241)
T PLN03152        131 VLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPG--GATLYSARTIKV-KEEEGIRTYYFYEFGRDEQHVALVATV  207 (241)
T ss_pred             eEEEEEecCccccccccccCChhHcCCHHHHHHhhCCC--cccccccceeee-eeecCCceeEEEEEEeCCcEEEEEEEE
Confidence            99999999999999888999999999999999999765  3222 4555555 3489999999999865  499999999


Q ss_pred             eCCEEEEEEEecCccchHhhhHHHHHHhhccccC
Q 025184          223 AGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRVV  256 (256)
Q Consensus       223 ~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrvv  256 (256)
                      ++||||||.++++|+||+|++++|+++++||+|+
T Consensus       208 srGKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        208 NSGKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             cCCeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            9999999999999999999999999999999986

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=3.8e-35  Score=250.97  Aligned_cols=143  Identities=32%  Similarity=0.614  Sum_probs=124.4

Q ss_pred             CCCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCC
Q 025184           86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGD  163 (256)
Q Consensus        86 ~~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~  163 (256)
                      +.||++|   .|..+|          |+|.||++|+++.+       .|.+++|+|+.+  +||+|+|.|+       ..
T Consensus        20 ~~~~~~y---~d~~~~----------y~f~~P~gW~~~~~-------~G~~v~f~d~~~~~~nvsV~v~p~-------~~   72 (175)
T PF01789_consen   20 STGFQPY---TDSDDG----------YSFLYPSGWEEVDV-------SGADVVFRDPIDADENVSVVVSPV-------PK   72 (175)
T ss_dssp             -SSEEEE---EECTTT----------EEEEEETTEEEEES-------TTEEEEEEETTETTSEEEEEEEE--------ST
T ss_pred             CCCceEE---EcCCCC----------EEEECCCCCeecCC-------CCeEEEEECcccccceEEEEEEec-------CC
Confidence            3899999   777787          99999999988776       367789999976  4999999997       34


Q ss_pred             cccccccCCHHHHHHHhCccccCCC---cccceeEeeeEEEcCeeeEEEEEcC-------CceEEEEEEeCCEEEEEEEe
Q 025184          164 DATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVT  233 (256)
Q Consensus       164 ~~sI~dlGspeev~~~l~~~~~g~~---~~a~ll~a~~r~~dG~~YY~yEl~~-------pH~L~satv~~GrLYtl~~~  233 (256)
                      ..+|+|||+|+++++.+++.++++.   ..++++++++++.+|++||+|||..       +|+|+++|+.+||||+|+++
T Consensus        73 ~~sl~~lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~  152 (175)
T PF01789_consen   73 DFSLEDLGSPEEVAERLLNGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQ  152 (175)
T ss_dssp             S-SGGGG-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cCchhhcCCHHHHHHHHhhhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEE
Confidence            4599999999999999998887554   3689999999999999999999852       29999999999999999999


Q ss_pred             cCccchHhhhHHHHHHhhcccc
Q 025184          234 GNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       234 a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      ++|+||+++++.|++|++||+|
T Consensus       153 a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  153 APESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EEHHHHHTCHHHHHHHHHC-EE
T ss_pred             cCHHHHHHHHHHHHHHHhcEEe
Confidence            9999999999999999999997

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.74  E-value=0.00074  Score=54.63  Aligned_cols=119  Identities=15%  Similarity=0.218  Sum_probs=72.7

Q ss_pred             eEEecCCCCeecccccccCCCCceeEEEeCCCCCeEEEEE--EecccccccCCCcccccccCCHHHHHHHhCccccCCCc
Q 025184          112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIV--APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV  189 (256)
Q Consensus       112 Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~~vsVvv--~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~~  189 (256)
                      -+|.+|.+|++..++.         +++.++.....+++|  .++       .+..      ++++..++.+..+ ....
T Consensus         2 g~~~lP~~~~D~t~nv---------~~~~~~~~~~~slvIsR~~l-------~~g~------tl~~~~~~q~~~l-~~~l   58 (130)
T PF08786_consen    2 GSLTLPDGWQDRTMNV---------LVLPDSGGSGPSLVISRDPL-------PDGE------TLEDYLQRQLAQL-RKQL   58 (130)
T ss_dssp             EEEEEETTSEE--BEE---------EEE--BTTB-EEEEEEEE----------TTS-------HHHHHHHHHHHH-HCCS
T ss_pred             ceEeCCCcceeceEEE---------EEccCCCCCcceEEEEeccC-------CCCC------CHHHHHHHHHHHH-HhhC
Confidence            3789999999987652         244444443444554  343       2333      4455554443322 1111


Q ss_pred             -ccceeEeeeEEEcCeeeEEEEE--cCC----ceEEEEEEeC-CEEEEEEEecCccchHhhhHHHHHHhhcc
Q 025184          190 -EGKVLSMDVEELCGRKYYRYEL--EPP----HVLITATAAG-NRLYLFSVTGNGLQWKRHYTDLKKIADSF  253 (256)
Q Consensus       190 -~a~ll~a~~r~~dG~~YY~yEl--~~p----H~L~satv~~-GrLYtl~~~a~e~rW~k~~~~Lr~v~~SF  253 (256)
                       .-++++.+..+.+|..-+.+++  ..+    |+...+...+ +++|+|+.+++....+..++.+..|++||
T Consensus        59 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   59 PGFQLVERQPITLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             TT-EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             CCcEEEeeEEEEeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence             2355665566678877655554  222    8887777777 99999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=94.65  E-value=1.4  Score=38.42  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=78.7

Q ss_pred             ceEEecCCCCeecccccccCCCCce-eEEEeCCCCCeEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccCCCc
Q 025184          111 PYLFSVPQEWDEVPVSIADLGGTEI-DLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV  189 (256)
Q Consensus       111 ~Ysf~~P~gW~e~~vs~~D~~~~g~-d~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~~  189 (256)
                      +.+|.+|.|+.+....   .|+.+. --.|.|+....+-++|.+     +  .+...      .+.+..+|..+-  ...
T Consensus        49 Kl~FtLPag~sdqsgk---~Gtq~nn~~vYad~tg~kavIVi~g-----D--~~~~~------Ld~la~rl~~qQ--r~r  110 (185)
T PRK11615         49 KLSFTLPADMSDQSGK---LGTQANNMHVYADATGQKAVIVILG-----D--DTNED------LAVLAKRLEDQQ--RSR  110 (185)
T ss_pred             EEEEEcCCcccccccc---ccccccceEEEEcCCCCEEEEEEeC-----C--CChhh------HHHHHHHHHHHH--Hhh
Confidence            7999999999975432   222211 237888766554444432     1  11111      344455553321  111


Q ss_pred             cc--ceeEeeeEEEcCeeeEEEEEcC--C--ceEE--EEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184          190 EG--KVLSMDVEELCGRKYYRYELEP--P--HVLI--TATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       190 ~a--~ll~a~~r~~dG~~YY~yEl~~--p--H~L~--satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      .+  .+++-+.-+.+|+..+..+-..  .  ..+.  ..+..++||-++-+..|.+.=.+....-++|+++..+
T Consensus       111 dp~lqvvsnK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~  184 (185)
T PRK11615        111 DPQLQVVTNKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI  184 (185)
T ss_pred             CcCceeecceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence            22  3344445568999999998532  1  3343  4446789999999999999888888888999887654

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=92.48  E-value=2.2  Score=36.12  Aligned_cols=121  Identities=15%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             eEEecCCCCeecccccccCCCCceeEEEeCCCCC--eEEEEEEe-cccccccCCCcccccccCCHHHHHHHhCccccCCC
Q 025184          112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG--RLFVIVAP-VLRFADDLGDDATIEKIGPPEKVINAFGPEVIGEN  188 (256)
Q Consensus       112 Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~--~vsVvv~p-~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~  188 (256)
                      -.|.+|..|++..+.           .|....++  .++.+|+- ..      .......+|=  ++-+..+-+++-|  
T Consensus         9 G~l~lP~~w~DrSvN-----------vf~~~~~gt~~~sfvIsRd~~------~~g~~~~~y~--~rql~~l~k~Lpg--   67 (147)
T COG5435           9 GTLELPAAWQDRSVN-----------VFVSGDNGTSGFSFVISRDPL------EPGDTFPEYV--QRQLALLRKQLPG--   67 (147)
T ss_pred             eeEcCcchhccceEE-----------EEEecCCCcceeEEEEecCCC------CCCCcHHHHH--HHHHHHHHhhCCC--
Confidence            479999999998875           46665554  57777752 11      1222222221  1111122111111  


Q ss_pred             cccceeEeeeEEEcC----eeeEEEEEc---CC--ceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184          189 VEGKVLSMDVEELCG----RKYYRYELE---PP--HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       189 ~~a~ll~a~~r~~dG----~~YY~yEl~---~p--H~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                        -++..-.+-+.+|    ..+|.|...   ..  |++.+..-.++++-+|+++++..-=++.++....++.||..
T Consensus        68 --y~~~~~~e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          68 --YELHHRREIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             --eEEeeccccccCccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence              2333333344566    346777763   22  67777656778999999999988888889999999999974

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=82.92  E-value=27  Score=30.22  Aligned_cols=127  Identities=14%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             eEEecCCCCeecccccccCCCCceeEEEeCCCC---CeEEEEEEecccccccCCCcccccccCCHHHHHHHhCcccc-CC
Q 025184          112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK---GRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI-GE  187 (256)
Q Consensus       112 Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~---~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~-g~  187 (256)
                      -++-.|+||....-.+.  ...-..+.......   .|..|+|..+   .-+|          +|+|+++.--..+- .+
T Consensus        33 v~lP~P~GW~~~~~~~~--~~a~~vi~~~~~~~~~~Pnavv~V~kL---~G~~----------Dp~e~l~~a~~d~~~l~   97 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNP--PWAYAVIVDPQADGGFPPNAVVTVSKL---TGDF----------DPAEALEHAPADAQNLP   97 (175)
T ss_pred             EeccCCcCcccCCCCCC--CceEEEEEeccccCCCCCceEEEEEec---cCCC----------CHHHHHHhchhhHhhCc
Confidence            67888999998653221  00011122222111   3888888765   2233          56777653211110 11


Q ss_pred             CcccceeEeeeEEEcCeeeEE----EEEcCC--c--eEEEEEEeCCEEEE--EEEecCccchHhhhHHHHHHhhcccc
Q 025184          188 NVEGKVLSMDVEELCGRKYYR----YELEPP--H--VLITATAAGNRLYL--FSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       188 ~~~a~ll~a~~r~~dG~~YY~----yEl~~p--H--~L~satv~~GrLYt--l~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      .++  .++.+.-+-+|-.=+.    |+....  |  +-.+|.-.++..|.  |++++.+.+=....+..+.|.+.|+|
T Consensus        98 g~~--~~~~s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen   98 GFR--ELDGSPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             Ccc--cccCCccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence            111  2232333344533333    222211  2  33333333555555  56678888888889999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	1e-23
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	6e-23
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	7e-23
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	6e-22

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 91.1 bits (225), Expect = 6e-23
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 38/182 (20%)

Query: 88  GWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRL 147
           G + Y    D              Y F  P+ W +V V        ++           +
Sbjct: 7   GLQAYVDSYDG-------------YEFLYPRGWVQVQVE----DPVDVVFHDIIETTENV 49

Query: 148 FVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGK---VLSMDVEELCGR 204
            V+V  V           ++E++G PE+V +     +I  +  G+   +++   ++   +
Sbjct: 50  SVVVNTV-------ASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDK 102

Query: 205 KYYRYE--LEPP---------HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSF 253
            YY  E  +  P         H L +   +  ++Y  SV+    +W +     K I  SF
Sbjct: 103 TYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSF 162

Query: 254 RV 255
            V
Sbjct: 163 TV 164

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 90.7 bits (224), Expect = 7e-23
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
           Y F  P  W  V V  A   G ++  R    +   L VI++ +         D T+  +G
Sbjct: 24  YEFLYPNGWIGVDVKGAS-PGVDVVFRDLIERDENLSVIISEIPS-------DKTLTDLG 75

Query: 172 PPEKVINAFGPEVI---GENVEGKVLSMDVEELCGRKYYRYELE-------PPHVLITAT 221
               V   F   V      + + ++++ +  +  G+ YY  E           H L + T
Sbjct: 76  TATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVT 135

Query: 222 AAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV 255
               +L  F ++    +W    +    +A SF V
Sbjct: 136 TNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHV 169

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 88.8 bits (219), Expect = 6e-22
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 40/173 (23%)

Query: 111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG--RLFVIVAPVLRFADDLGDDATIE 168
            +   +P +W   P    +  G    LRF         + V + P         D  +I 
Sbjct: 16  GFKLQIPSKW--NPNKEVEYPG--QVLRFEDNFDATSNVIVAITPT--------DKKSIT 63

Query: 169 KIGPPEKVINAFGPEVIGENVEGK----------------VLSMDVEELCGRKYYRYELE 212
             G PE+ ++     +  +   GK                VL     E+ G++YY   + 
Sbjct: 64  DFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSIL 123

Query: 213 ---------PPHVLITATAAGNRLYLFSVTGNGLQW-KRHYTDLKKIADSFRV 255
                      H L+TAT    +LY+        +W K     ++  A SF +
Sbjct: 124 TRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.11
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	95.96

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.6e-35  Score=253.52  Aligned_cols=144  Identities=23%  Similarity=0.466  Sum_probs=119.8

Q ss_pred             CCCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCC
Q 025184           86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGD  163 (256)
Q Consensus        86 ~~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~  163 (256)
                      ..||++|.     .+|          |+|.||++|+++++..    .+|+|++|+|+++  +||+|+|+|+        +
T Consensus         6 ~~g~~~y~-----~~g----------ysf~yP~~W~~~~~~~----~~G~~~~f~d~~~~~~nvsV~v~p~--------~   58 (177)
T 1v2b_A            6 DTDFQTYN-----GDG----------FKLQIPSKWNPNKEVE----YPGQVLRFEDNFDATSNVIVAITPT--------D   58 (177)
T ss_dssp             -CCEEEEE-----CSS----------EEEEEETTCEECCCCC----STTEEEEEEETTEEEEEEEEEEEEC--------S
T ss_pred             CCCceEEe-----cCC----------EEEEcCCCCccccccc----CCCceEEEeCCcCCCccEEEEEeCC--------C
Confidence            38999993     566          9999999999877642    3689999999987  5999999995        4


Q ss_pred             cccccccCCHHHHHHHh----CccccCC------------CcccceeEeeeEEEcCeeeEEEEEc---------CCceEE
Q 025184          164 DATIEKIGPPEKVINAF----GPEVIGE------------NVEGKVLSMDVEELCGRKYYRYELE---------PPHVLI  218 (256)
Q Consensus       164 ~~sI~dlGspeev~~~l----~~~~~g~------------~~~a~ll~a~~r~~dG~~YY~yEl~---------~pH~L~  218 (256)
                      +++|+|||+|+++++.+    +++++.+            ..+++|+++++++.||++||+|||.         .+|+|+
T Consensus        59 ~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~  138 (177)
T 1v2b_A           59 KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLV  138 (177)
T ss_dssp             CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEE
T ss_pred             CCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEE
Confidence            58999999999975554    4443432            1358999999999999999999984         249999


Q ss_pred             EEEEeCCEEEEEEEecCccchHhh-hHHHHHHhhccccC
Q 025184          219 TATAAGNRLYLFSVTGNGLQWKRH-YTDLKKIADSFRVV  256 (256)
Q Consensus       219 satv~~GrLYtl~~~a~e~rW~k~-~~~Lr~v~~SFrvv  256 (256)
                      ++||++||||+|+++++|+||+++ ++.|++|++||+|+
T Consensus       139 ~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          139 TATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA  177 (177)
T ss_dssp             EEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             EEEEECCEEEEEEEecCHHHhhhhHHHHHHHHHhheecC
Confidence            999999999999999999999996 99999999999985

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=4.9e-34  Score=240.02  Aligned_cols=144  Identities=24%  Similarity=0.456  Sum_probs=128.4

Q ss_pred             CCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCc
Q 025184           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDD  164 (256)
Q Consensus        87 ~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~  164 (256)
                      .||++|   .|..+|          |+|.||++|+++.++      .|++++|+|+.+  +||+|+|.|+       .+.
T Consensus         6 ~g~~~~---~D~~~g----------ysf~~P~~W~~~~~~------~g~~v~f~d~~~~~~~v~V~v~p~-------~~~   59 (165)
T 2xb3_A            6 SGLQAY---VDSYDG----------YEFLYPRGWVQVQVE------DPVDVVFHDIIETTENVSVVVNTV-------AST   59 (165)
T ss_dssp             CCEEEE---EETTTT----------EEEEEETTEEEECCC------TTEEEEEEESSCTTSEEEEEEEEC-------SSC
T ss_pred             CCceEE---EcCCCC----------EEEEcCCCCeEecCC------CCceEEEECcccCCceEEEEEecC-------CCC
Confidence            799999   777777          999999999997764      278899999976  4999999996       345


Q ss_pred             ccccccCCHHHHHHHhCccccCCC---cccceeEeeeEEEcCeeeEEEEEc----C-------CceEEEEEEeCCEEEEE
Q 025184          165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELE----P-------PHVLITATAAGNRLYLF  230 (256)
Q Consensus       165 ~sI~dlGspeev~~~l~~~~~g~~---~~a~ll~a~~r~~dG~~YY~yEl~----~-------pH~L~satv~~GrLYtl  230 (256)
                      ++|+|||+||++++.|++..++++   .+++|++++.++.+|++||+||+.    .       +|+|+++++.+||||+|
T Consensus        60 ~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l  139 (165)
T 2xb3_A           60 KSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTL  139 (165)
T ss_dssp             CCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEE
T ss_pred             CChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEE
Confidence            899999999999999998877543   368999999999999999999985    2       29999999999999999


Q ss_pred             EEecCccchHhhhHHHHHHhhccccC
Q 025184          231 SVTGNGLQWKRHYTDLKKIADSFRVV  256 (256)
Q Consensus       231 ~~~a~e~rW~k~~~~Lr~v~~SFrvv  256 (256)
                      ++++||++|+++++.|++|++||+|+
T Consensus       140 ~~sape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          140 SVSAPEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             EEecCHHHhHHHHHHHHHHHhhEEeC
Confidence            99999999999999999999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=3.2e-35  Score=249.27  Aligned_cols=147  Identities=23%  Similarity=0.395  Sum_probs=131.3

Q ss_pred             CCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCC--CeEEEEEEecccccccCCCc
Q 025184           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKK--GRLFVIVAPVLRFADDLGDD  164 (256)
Q Consensus        87 ~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~--~~vsVvv~p~~rl~~~~~~~  164 (256)
                      .||++|   .|..+|          |+|.||++|+++.+++   +++|.|++|+|+.+  +||+|+|+|+       ..+
T Consensus        12 ~g~~~y---~d~~~g----------y~f~~P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~-------~~~   68 (170)
T 2lnj_A           12 ASLQRY---SDTKDG----------YEFLYPNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEI-------PSD   68 (170)
Confidence            799999   777778          9999999999987653   23588999999987  4999999996       345


Q ss_pred             ccccccCCHHHHHHHhCccccCCC---cccceeEeeeEEEcCeeeEEEEEcC-------CceEEEEEEeCCEEEEEEEec
Q 025184          165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVTG  234 (256)
Q Consensus       165 ~sI~dlGspeev~~~l~~~~~g~~---~~a~ll~a~~r~~dG~~YY~yEl~~-------pH~L~satv~~GrLYtl~~~a  234 (256)
                      ++|+|||+|+++++.|++.++.++   .+++|+++++++.||++||+|||..       .|+|+++++.+||||+|++++
T Consensus        69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~a  148 (170)
T 2lnj_A           69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLST  148 (170)
Confidence            899999999999999999877543   4689999999999999999999862       299999999999999999999


Q ss_pred             CccchHhhhHHHHHHhhccccC
Q 025184          235 NGLQWKRHYTDLKKIADSFRVV  256 (256)
Q Consensus       235 ~e~rW~k~~~~Lr~v~~SFrvv  256 (256)
                      ||++|++.++.|++|++||+|+
T Consensus       149 pe~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          149 AEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            9999999999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.11  E-value=4.4e-05  Score=62.46  Aligned_cols=120  Identities=11%  Similarity=0.119  Sum_probs=75.9

Q ss_pred             ceEEecCCCCeecccccccCCCCceeEEEeCCCCC-e--EEEEEEe--cccccccCCCcccccccCCHH-HHHHHhCccc
Q 025184          111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG-R--LFVIVAP--VLRFADDLGDDATIEKIGPPE-KVINAFGPEV  184 (256)
Q Consensus       111 ~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~-~--vsVvv~p--~~rl~~~~~~~~sI~dlGspe-ev~~~l~~~~  184 (256)
                      .++|.+|.+|++..+.           .|..+..+ .  .+++|+-  +       .+..+++++=.-+ +.++.-++. 
T Consensus        10 Egsl~lP~gw~D~t~n-----------v~~~~~~~~~g~~~lvIsR~~~-------~~~~~l~~~~~~q~~~l~~~l~~-   70 (148)
T 1tu1_A           10 EADLEIPDAWQDQSIN-----------IFKLPASGPAREASFVISRDAS-------QGDAPFADYVARQLENAEKQLPG-   70 (148)
T ss_dssp             SEEEEEETTSEECCBE-----------EEEECCBTTBCCEEEEEEEECC-------CTTSCHHHHHHHHHHHHHHHSTT-
T ss_pred             CEEEeCCCCcEeeeEE-----------EEEcCCCCCCCceEEEEEeccC-------CCCCCHHHHHHHHHHHHHhhCcC-
Confidence            4899999999965543           34444432 3  6776653  2       2333443332222 111111111 


Q ss_pred             cCCCcccceeEeeeEEEcCeeeEEEEE--cCC----ceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184          185 IGENVEGKVLSMDVEELCGRKYYRYEL--EPP----HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       185 ~g~~~~a~ll~a~~r~~dG~~YY~yEl--~~p----H~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                            -+++.....+.+|..-..+|+  ...    |....+....+++|+|+.+++..-|+..+..++.|++||+.
T Consensus        71 ------y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           71 ------FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             ------CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             ------cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence                  244444444457766555554  222    88888877766999999999999999999999999999984

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=95.96  E-value=0.27  Score=40.91  Aligned_cols=125  Identities=9%  Similarity=0.056  Sum_probs=75.5

Q ss_pred             ceEEecCCCCeecccccccCCCCceeEEEeCC----CCCeEEEEEEecccccccCCCcccccccCCHHHHHHHhCccccC
Q 025184          111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASP----KKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIG  186 (256)
Q Consensus       111 ~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~----~~~~vsVvv~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g  186 (256)
                      .+++.+|.||+....-+.      +-+.=.+.    +..|+-|.+.-+       ..+  +     .|+.-..+ .+.++
T Consensus        19 ~~~v~~P~gWe~~~~~~~------~~~~~~~~~~~~F~pN~vVtv~r~-------~~~--~-----~e~~r~el-~~~~~   77 (161)
T 3lyd_A           19 GFTVPIPETWQPDPTMGT------QFAARPHTPPQGFTPNIIGTVRRA-------ATG--A-----LHNQRTEL-DQRAT   77 (161)
T ss_dssp             EEEEECCTTEEECTTSSS------SEEEEESSCCSSSCCEEEEEEEEE-------CTT--H-----HHHHHHHH-HHHHT
T ss_pred             eeeccCCCCceEcCCCCc------eEEeccCCCCCCccccEEEEEEec-------CcH--H-----HHHHHHHH-HHHHh
Confidence            389999999998754221      11112122    224777777653       111  1     24333333 11111


Q ss_pred             CCcccceeEeeeEEEcCeeeEEEEEc--CC----c--eEEEEEE-eCCEEEEE--EEecCccchHhhhHHHHHHhhcccc
Q 025184          187 ENVEGKVLSMDVEELCGRKYYRYELE--PP----H--VLITATA-AGNRLYLF--SVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       187 ~~~~a~ll~a~~r~~dG~~YY~yEl~--~p----H--~L~satv-~~GrLYtl--~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      .--.-++++....+.+|..-|..|+.  .+    |  .+..+.+ .++..|++  +++|.+.+-+...+.++.|++||+|
T Consensus        78 ~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v  157 (161)
T 3lyd_A           78 QLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTV  157 (161)
T ss_dssp             TSTTCEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEE
T ss_pred             hCCCcEeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEe
Confidence            11112445545568899888877764  33    3  2344444 45788877  8889999999999999999999997


Q ss_pred             C
Q 025184          256 V  256 (256)
Q Consensus       256 v  256 (256)
                      +
T Consensus       158 ~  158 (161)
T 3lyd_A          158 Q  158 (161)
T ss_dssp             E
T ss_pred             c
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-20

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 84.0 bits (207), Expect = 1e-20
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 36/170 (21%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
           +   +P +W   P    +  G  +           + V + P         D  +I   G
Sbjct: 11  FKLQIPSKW--NPNKEVEYPGQVLRFEDNFDATSNVIVAITPT--------DKKSITDFG 60

Query: 172 PPEKVINAFGPEVIGENVEGK----------------VLSMDVEELCGRKYYRYELEPP- 214
            PE+ ++     +  +   GK                VL     E+ G++YY   +    
Sbjct: 61  SPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRT 120

Query: 215 --------HVLITATAAGNRLYLFSVTGNGLQW-KRHYTDLKKIADSFRV 255
                   H L+TAT    +LY+        +W K     ++  A SF +
Sbjct: 121 ADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.37

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.1e-33  Score=237.83  Aligned_cols=143  Identities=22%  Similarity=0.449  Sum_probs=120.3

Q ss_pred             CCceeeeccCCCCCCCCCCCccccceEEecCCCCeecccccccCCCCceeEEEeCCCCC--eEEEEEEecccccccCCCc
Q 025184           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG--RLFVIVAPVLRFADDLGDD  164 (256)
Q Consensus        87 ~gf~~y~~p~d~~gg~g~~~~~~~~Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~--~vsVvv~p~~rl~~~~~~~  164 (256)
                      ++|++|.     .+|          |+|.||++|+++.+    .+..|+|++|+|+.++  ||+|+|+|+        ++
T Consensus         1 ~~~~~y~-----~dg----------y~f~~P~~W~~~~~----~~~~g~d~~f~d~~~~~~nv~V~v~p~--------~~   53 (171)
T d1v2ba_           1 TDFQTYN-----GDG----------FKLQIPSKWNPNKE----VEYPGQVLRFEDNFDATSNVIVAITPT--------DK   53 (171)
T ss_dssp             CCEEEEE-----CSS----------EEEEEETTCEECCC----CCSTTEEEEEEETTEEEEEEEEEEEEC--------SC
T ss_pred             CCccccc-----CCC----------EEEECCCCCceecc----cCCCCceEEEeccccCCceEEEEEecC--------CC
Confidence            3689993     367          99999999987553    3346899999999884  999999994        67


Q ss_pred             ccccccCCHHHHHHHhCccccCCC----------------cccceeEeeeEEEcCeeeEEEEEcC---------CceEEE
Q 025184          165 ATIEKIGPPEKVINAFGPEVIGEN----------------VEGKVLSMDVEELCGRKYYRYELEP---------PHVLIT  219 (256)
Q Consensus       165 ~sI~dlGspeev~~~l~~~~~g~~----------------~~a~ll~a~~r~~dG~~YY~yEl~~---------pH~L~s  219 (256)
                      .+|++||+|+++++.+++.++...                .+++|+++++++.||++||+|||.+         +|+|++
T Consensus        54 ~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~  133 (171)
T d1v2ba_          54 KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVT  133 (171)
T ss_dssp             SSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEE
T ss_pred             cchhhccChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEE
Confidence            899999999999999877765321                1468999999999999999999842         299999


Q ss_pred             EEEeCCEEEEEEEecCccchHhh-hHHHHHHhhccccC
Q 025184          220 ATAAGNRLYLFSVTGNGLQWKRH-YTDLKKIADSFRVV  256 (256)
Q Consensus       220 atv~~GrLYtl~~~a~e~rW~k~-~~~Lr~v~~SFrvv  256 (256)
                      ++|.+||||+|++|+||+||+++ ++.|++|++||+|.
T Consensus       134 ~~v~~grLYtl~~~~pe~~w~~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         134 ATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA  171 (171)
T ss_dssp             EEEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             EEEeCCEEEEEEEecCHHHhhhhhHHHHHHHHhceEeC
Confidence            99999999999999999999886 66799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=2e-06  Score=67.87  Aligned_cols=122  Identities=8%  Similarity=0.070  Sum_probs=80.6

Q ss_pred             eEEecCCCCeecccccccCCCCceeEEEeCCCCC-eEEEEE--EecccccccCCCcccccccCCHHHHHHHhCccccCCC
Q 025184          112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG-RLFVIV--APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGEN  188 (256)
Q Consensus       112 Ysf~~P~gW~e~~vs~~D~~~~g~d~rF~d~~~~-~vsVvv--~p~~rl~~~~~~~~sI~dlGspeev~~~l~~~~~g~~  188 (256)
                      -+|.+|.+|++..+.         .+.+-++.+. ..+++|  .++       .+..      +++++.+.....+-..-
T Consensus        11 gs~~lP~gw~d~t~n---------i~~~~~~~~~~~~~lvIsr~~l-------~~~~------~l~~~~~~~~~~l~~~l   68 (144)
T d1tu1a_          11 ADLEIPDAWQDQSIN---------IFKLPASGPAREASFVISRDAS-------QGDA------PFADYVARQLENAEKQL   68 (144)
T ss_dssp             EEEEEETTSEECCBE---------EEEECCBTTBCCEEEEEEEECC-------CTTS------CHHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCCceeCcce---------EEEecCCCCCcceEEEEEeecC-------CCCC------CHHHHHHHHHHHHHhhC
Confidence            589999999986653         1233343332 344444  443       2334      44444443322221000


Q ss_pred             cccceeEeeeEEEcCeeeEEEEEc--CC----ceEEEEEEeCCEEEEEEEecCccchHhhhHHHHHHhhcccc
Q 025184          189 VEGKVLSMDVEELCGRKYYRYELE--PP----HVLITATAAGNRLYLFSVTGNGLQWKRHYTDLKKIADSFRV  255 (256)
Q Consensus       189 ~~a~ll~a~~r~~dG~~YY~yEl~--~p----H~L~satv~~GrLYtl~~~a~e~rW~k~~~~Lr~v~~SFrv  255 (256)
                      ..-++++.+..+.+|+.-+..|+.  .+    |+..++...++++|+|+.+++...|+..++.+..+++||+.
T Consensus        69 ~~~~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_          69 PGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             CCcEEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            123667666667888887777753  22    88888888999999999999999999999999999999974