Citrus Sinensis ID: 025197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPIHTHQPLAPEDY
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccHEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
mpprryaigradeaahpDTMRAALAEFVSTLIFVFAGEGSILALDKiskatttspSDLVVIALAHALALFAAVASSintsgghvnpavTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATvidpkrgslgivgpLAIGFIVGanilvggpfdgasmnparafgpalvgwrwrnhwIYWVGPFLGAGLAALIYEYivipteppihthqplapedy
mpprryaigradeaahpdTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTeppihthqplapedy
MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDlvvialahalalfaavaSSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPIHTHQPLAPEDY
*******************MRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPT***************
***RR*A*GRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVI*****************
MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPIHTHQPLAPEDY
MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTE**************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPIHTHQPLAPEDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
P26587268 Aquaporin TIP3-1 OS=Arabi yes no 0.988 0.944 0.740 1e-102
O22588267 Probable aquaporin TIP3-2 no no 0.988 0.947 0.754 1e-101
Q9AT75266 Aquaporin TIP3-2 OS=Zea m N/A no 0.988 0.951 0.664 8e-96
P23958256 Probable aquaporin TIP-ty N/A no 1.0 1.0 0.714 1e-92
Q9FWV6264 Probable aquaporin TIP3-1 yes no 0.992 0.962 0.658 3e-90
Q9ATL7262 Aquaporin TIP3-1 OS=Zea m N/A no 0.992 0.969 0.669 2e-89
P25818251 Aquaporin TIP1-1 OS=Arabi no no 0.980 1.0 0.613 7e-84
Q41963253 Aquaporin TIP1-2 OS=Arabi no no 0.984 0.996 0.603 2e-81
O82598252 Aquaporin TIP1-3 OS=Arabi no no 0.984 1.0 0.589 4e-81
P50156250 Probable aquaporin TIP1-1 no no 0.976 1.0 0.597 1e-78
>sp|P26587|TIP31_ARATH Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 224/262 (85%), Gaps = 9/262 (3%)

Query: 4   RRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKI-----SKATTTSPSDL 58
           R Y  GRADEA HPD++RA LAEF+ST +FVFA EGSIL+LDK+     + A T +P  L
Sbjct: 7   RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGL 66

Query: 59  VVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAA 118
           +++ALAHA ALFAAV+++IN SGGHVNPAVTFGAL+GGR++ +RAIYYWIAQLLGAI+A 
Sbjct: 67  ILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILAC 126

Query: 119 LLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLA 178
           LLLR  TNGMRPVGF +ASGVG  +GLVLEI++TFGLVY VY+T+IDPKRGSLGI+ PLA
Sbjct: 127 LLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLA 186

Query: 179 IGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
           IG IVGANILVGGPF GASMNPARAFGPALVGWRW +HWIYWVGPF+G+ LAALIYEY+V
Sbjct: 187 IGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMV 246

Query: 239 IPTEPPIH----THQPLAPEDY 256
           IPTEPP H     HQPLAPEDY
Sbjct: 247 IPTEPPTHHAHGVHQPLAPEDY 268
Water channel required to facilitate the transport of water from the vacuolar compartment to the cytoplasm.
Arabidopsis thaliana (taxid: 3702)
>sp|O22588|TIP32_ARATH Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT75|TIP32_MAIZE Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1 Back     alignment and function description
>sp|P23958|TIPA_PHAVU Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|Q9FWV6|TIP31_ORYSJ Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATL7|TIP31_MAIZE Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1 Back     alignment and function description
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|O82598|TIP13_ARATH Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1 Back     alignment and function description
>sp|P50156|TIP11_ORYSJ Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
255569391255 tonoplast intrinsic protein, putative [R 0.992 0.996 0.822 1e-117
224116510258 aquaporin, MIP family, TIP subfamily [Po 0.992 0.984 0.817 1e-117
224118662258 aquaporin, MIP family, TIP subfamily [Po 0.992 0.984 0.797 1e-111
7441287279 membrane protein MP23 precursor - cucurb 1.0 0.917 0.720 1e-111
449514876328 PREDICTED: probable aquaporin TIP3-2-lik 1.0 0.780 0.692 1e-109
449439533289 PREDICTED: probable aquaporin TIP3-2-lik 1.0 0.885 0.692 1e-109
7441288269 membrane protein MP28 - cucurbit gi|1109 1.0 0.951 0.724 1e-108
356531005255 PREDICTED: probable aquaporin TIP-type a 0.996 1.0 0.742 1e-105
297839189268 alpha-tonoplast intrinsic protein [Arabi 0.988 0.944 0.748 1e-101
15219403268 aquaporin TIP3-1 [Arabidopsis thaliana] 0.988 0.944 0.740 1e-101
>gi|255569391|ref|XP_002525663.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223535099|gb|EEF36781.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/254 (82%), Positives = 231/254 (90%)

Query: 3   PRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIA 62
           PRRYA GRA+EA HPD++RA LAEFVSTLIFVFAGEGS+LALDK+ + T    S LV++A
Sbjct: 2   PRRYAFGRAEEATHPDSIRATLAEFVSTLIFVFAGEGSVLALDKLYRETGPPASGLVMVA 61

Query: 63  LAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLR 122
           LAH LALF+AV++SIN SGGH+NPAVTFGAL+GGRISVV A YYWIAQLLGAIVA+LLLR
Sbjct: 62  LAHGLALFSAVSASINISGGHLNPAVTFGALVGGRISVVLAFYYWIAQLLGAIVASLLLR 121

Query: 123 FATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFI 182
             TNGMRPVGF+V SGVGE HGL++E+VMTFGLVYTVYAT IDPKRGSLGI+ PLAIGFI
Sbjct: 122 LVTNGMRPVGFHVTSGVGEVHGLIMEMVMTFGLVYTVYATAIDPKRGSLGIIAPLAIGFI 181

Query: 183 VGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTE 242
           VGANILVGGPFDGASMNPARAFGPALVGWRW NHWIYW+GPF+G GLAALIYEY+VIPTE
Sbjct: 182 VGANILVGGPFDGASMNPARAFGPALVGWRWNNHWIYWLGPFVGGGLAALIYEYMVIPTE 241

Query: 243 PPIHTHQPLAPEDY 256
           PP HTHQPLAPEDY
Sbjct: 242 PPHHTHQPLAPEDY 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116510|ref|XP_002331915.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|222874587|gb|EEF11718.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224118662|ref|XP_002331417.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|222873631|gb|EEF10762.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7441287|pir||T10251 membrane protein MP23 precursor - cucurbit gi|1109612|dbj|BAA08107.1| MP23 precursor [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|449514876|ref|XP_004164504.1| PREDICTED: probable aquaporin TIP3-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439533|ref|XP_004137540.1| PREDICTED: probable aquaporin TIP3-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7441288|pir||T10253 membrane protein MP28 - cucurbit gi|1109614|dbj|BAA08108.1| MP28 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|356531005|ref|XP_003534069.1| PREDICTED: probable aquaporin TIP-type alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|297839189|ref|XP_002887476.1| alpha-tonoplast intrinsic protein [Arabidopsis lyrata subsp. lyrata] gi|297333317|gb|EFH63735.1| alpha-tonoplast intrinsic protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219403|ref|NP_177462.1| aquaporin TIP3-1 [Arabidopsis thaliana] gi|135858|sp|P26587.1|TIP31_ARATH RecName: Full=Aquaporin TIP3-1; AltName: Full=Alpha-tonoplast intrinsic protein; Short=Alpha-TIP; AltName: Full=Tonoplast intrinsic protein 3-1; Short=AtTIP3;1 gi|12324323|gb|AAG52132.1|AC010556_14 tonoplast intrinsic protein, alpha (alpha-TIP); 45552-44536 [Arabidopsis thaliana] gi|16182|emb|CAA45114.1| tonoplast intrinsic protein: alpha-TIP(Ara) [Arabidopsis thaliana] gi|166623|gb|AAA32748.1| tonoplast intrinsic protein [Arabidopsis thaliana] gi|17381196|gb|AAL36410.1| putative tonoplast intrinsic protein alpha-TIP [Arabidopsis thaliana] gi|21436427|gb|AAM51414.1| putative tonoplast intrinsic protein alpha-TIP [Arabidopsis thaliana] gi|332197306|gb|AEE35427.1| aquaporin TIP3-1 [Arabidopsis thaliana] gi|445128|prf||1908432A tonoplast intrinsic protein alpha Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.988 0.947 0.701 4.1e-97
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.988 0.944 0.694 2.2e-96
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.980 1.0 0.574 3.5e-75
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 0.980 0.992 0.562 3.6e-73
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 0.984 1.0 0.550 9.6e-73
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.960 0.984 0.484 3.9e-60
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.953 0.979 0.488 1.7e-59
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.937 0.96 0.5 1.9e-58
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.945 0.968 0.475 2.2e-57
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.871 0.871 0.429 3.9e-44
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 183/261 (70%), Positives = 209/261 (80%)

Query:     4 RRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKAT-----TTSPSDX 58
             R Y  GRADEA HPD++RA LAEF+ST +FVFAGEGSILALDK+   T     T +P   
Sbjct:     7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGL 66

Query:    59 XXXXXXXXXXXXXXXXSSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAA 118
                             ++IN SGGHVNPAVTF AL+GGRISV+RAIYYW+AQL+GAI+A 
Sbjct:    67 VLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILAC 126

Query:   119 LLLRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLA 178
             LLLR ATNG+RPVGF+VASGV E HGL++EI++TF LVY VY+T IDPKRGS+GI+ PLA
Sbjct:   127 LLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLA 186

Query:   179 IGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
             IG IVGANILVGGPFDGASMNPARAFGPALVGWRW NHWIYWVGPF+G  LAALIYEY++
Sbjct:   187 IGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIYEYMI 246

Query:   239 IPT--EPPIH-THQPLAPEDY 256
             IP+  EPP H THQPLAPEDY
Sbjct:   247 IPSVNEPPHHSTHQPLAPEDY 267
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42067TIP1_MEDSANo assigned EC number0.57810.97261.0N/Ano
Q6PQZ1AQP1_PIGNo assigned EC number0.41300.8750.8265yesno
Q9N2J4AQP1_CANFANo assigned EC number0.40430.8750.8265yesno
P47865AQP1_BOVINNo assigned EC number0.43040.8750.8265yesno
P23958TIPA_PHAVUNo assigned EC number0.71481.01.0N/Ano
P24422TIP2_TOBACNo assigned EC number0.5080.95700.98N/Ano
P26587TIP31_ARATHNo assigned EC number0.74040.98820.9440yesno
Q9FY14TIP1_MEDTRNo assigned EC number0.58590.97651.0N/Ano
P29975AQP1_RATNo assigned EC number0.42150.85540.8141yesno
P29972AQP1_HUMANNo assigned EC number0.41660.8750.8327yesno
Q9ATL7TIP31_MAIZENo assigned EC number0.66920.99210.9694N/Ano
O22588TIP32_ARATHNo assigned EC number0.75470.98820.9475nono
Q9FWV6TIP31_ORYSJNo assigned EC number0.65890.99210.9621yesno
Q9ATL8TIP22_MAIZENo assigned EC number0.51980.96480.988N/Ano
P21653TIP1_TOBACNo assigned EC number0.50790.96480.988N/Ano
O64964TIP11_MAIZENo assigned EC number0.58980.97651.0N/Ano
Q9ATM0TIP12_MAIZENo assigned EC number0.58590.99211.0N/Ano
Q9AT75TIP32_MAIZENo assigned EC number0.66400.98820.9511N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_184000008
aquaporin, MIP family, TIP subfamily (258 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-117
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-88
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-78
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-73
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-72
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-64
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-37
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-30
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-25
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-25
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-24
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-23
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-15
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-07
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-04
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information 
 Score =  335 bits (860), Expect = e-117
 Identities = 159/256 (62%), Positives = 195/256 (76%), Gaps = 4/256 (1%)

Query: 1   MPPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVV 60
           MP RR AIG   EA+HPD ++AALAEF+STLIFVFAGEGS +A +K++   +T+P+ LV 
Sbjct: 1   MPIRRIAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVA 60

Query: 61  IALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALL 120
            ALAHA ALF AV+   N SGGHVNPAVTFGA +GG I+++R I YWIAQLLG++VA LL
Sbjct: 61  AALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLL 120

Query: 121 LRFATNGMRPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIG 180
           L+F+T G+    F ++SGVG  +  V EIVMTFGLVYTVYAT +DPK+G LGI+ P+AIG
Sbjct: 121 LKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIG 180

Query: 181 FIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIP 240
           FIVGANIL GG FDGASMNPA +FGPA+V W W NHW+YW GP +G G+A L+YE I I 
Sbjct: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIG 240

Query: 241 TEPPIHTHQPLAPEDY 256
           +     TH+ L   DY
Sbjct: 241 S----TTHEQLPTTDY 252

Length = 252
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.68
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00183 274 putative aquaporin NIP7; Provisional 99.6
PLN00166 250 aquaporin TIP2; Provisional 99.58
PLN00167 256 aquaporin TIP5; Provisional 99.58
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.58
PLN00182 283 putative aquaporin NIP4; Provisional 99.57
PLN00027 252 aquaporin TIP; Provisional 99.55
PRK05420 231 aquaporin Z; Provisional 99.54
PTZ00016 294 aquaglyceroporin; Provisional 99.53
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.49
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.39
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.38
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.36
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.3
COG2116265 FocA Formate/nitrite family of transporters [Inorg 90.45
PRK11562268 nitrite transporter NirC; Provisional 90.0
PRK09713282 focB putative formate transporter; Provisional 84.91
PF01226250 Form_Nir_trans: Formate/nitrite transporter; Inter 82.93
PRK10805285 formate transporter; Provisional 82.58
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-53  Score=363.20  Aligned_cols=222  Identities=54%  Similarity=0.858  Sum_probs=204.1

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHH
Q 025197           12 DEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFG   91 (256)
Q Consensus        12 ~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla   91 (256)
                      ++..+.+.+|++++||++|++++|++|++.+...+     ...+.+.+.+++.+|+.+++.+++++++||||+|||||++
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a   77 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLA   77 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHH
Confidence            45667999999999999999999999999875433     2235678899999999999999999999999999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 025197           92 ALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGM----RPVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPK  167 (256)
Q Consensus        92 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~  167 (256)
                      +++.|++++.++..|+.+|++|+++|+++++.+.+..    ......++++.+.+|+++.|++.||+|+++++.+++|+|
T Consensus        78 ~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~  157 (238)
T KOG0223|consen   78 FAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPR  157 (238)
T ss_pred             HHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCC
Confidence            9999999999999999999999999999999998763    234456778899999999999999999999999888888


Q ss_pred             CCCCCChHHHHHHHHHHHHHHhhcCCCCCccchhhhHHHHHccCCCccchhHhhhhhHHHHHHHHHHHHHhcCC
Q 025197          168 RGSLGIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPT  241 (256)
Q Consensus       168 ~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~vap~~Ga~~a~~~~~~l~~~~  241 (256)
                      ++   .+.|+.||+++...+++.+++||++|||||+|||++..+.|+++|+||++|++|+++++++|++++.++
T Consensus       158 ~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  158 RS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             Cc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            75   579999999999999999999999999999999999999999999999999999999999999999988

>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2 Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 7e-38
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-36
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-34
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-34
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-34
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 8e-34
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 6e-32
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 8e-32
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 9e-32
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-31
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-29
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 8e-29
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 8e-29
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 9e-29
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-28
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-28
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 1e-15
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 5e-13
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-12
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-10
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-10
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-10
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 3e-10
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-10
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 6e-10
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 8e-10
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 1e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-05
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 4e-05
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 131/230 (56%), Gaps = 6/230 (2%)
Query: 21  RAALAEFVSTLIFVFAGEGSILALDK--ISKATTTSPSDXXXXXXXXXXXXXXXXXSSIN 78
           RA +AEF++ ++F+F   GS L       S  TT +  D                 S  +
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 79  TSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGM--RPVGFY-V 135
            SG H+NPAVT G LL  +ISV+RAI Y IAQ +GAIVA  +L   T+ +    +G   +
Sbjct: 72  ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 136 ASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFDG 195
           A GV  G GL +EI+ T  LV  V AT  D +R  LG  GPLAIGF V    L+   + G
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190
Query: 196 ASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPI 245
             +NPAR+FG +++   +++HWI+WVGPF+GA LA LIY++I+ P    +
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDL 240
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 7e-96
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-91
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 3e-91
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-90
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-89
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 5e-89
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-88
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 9e-05
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-86
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-82
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-80
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-06
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 8e-69
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-46
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-42
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  283 bits (726), Expect = 7e-96
 Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 7/245 (2%)

Query: 2   PPRRYAIGRADEAAHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVI 61
           P  R  +            +A  AEF++ LIFV    GS +       +    P D+V+I
Sbjct: 34  PSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINW---GGSENPLPVDMVLI 90

Query: 62  ALAHALALFAAVASSINTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLL 121
           +L   L++   V    + SGGH+NPAVT   +   +IS+ ++++Y  AQ LGAI+ A +L
Sbjct: 91  SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 150

Query: 122 RFATNGMRPVGFYV---ASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLA 178
              T      G  V      +  GHGL++E+++TF LV+T++A+  D KR  +     LA
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALA 209

Query: 179 IGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIV 238
           IGF V    L    + GASMNPAR+FGPA++   W NHWIYWVGP +GA LA  +YEY+ 
Sbjct: 210 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269

Query: 239 IPTEP 243
            P   
Sbjct: 270 CPDVE 274
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.6
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.58
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.52
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.5
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.5
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.47
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.47
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.47
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.45
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.43
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.43
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.42
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.42
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 84.19
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=2.3e-54  Score=383.30  Aligned_cols=224  Identities=40%  Similarity=0.665  Sum_probs=195.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHH
Q 025197           15 AHPDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALL   94 (256)
Q Consensus        15 ~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l   94 (256)
                      ..++++|++++||+|||+|+|+++++++..   .+.....+.+++.++++||+++++++++++++||||+|||||+++++
T Consensus        47 ~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~---~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l  123 (340)
T 3iyz_A           47 WTQAFWKAVTAEFLAMLIFVLLSVGSTINW---GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC  123 (340)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHH
Confidence            346789999999999999999999998743   11122234578899999999999999999999999999999999999


Q ss_pred             hCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 025197           95 GGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMR---PVGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSL  171 (256)
Q Consensus        95 ~g~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~  171 (256)
                      .|+++|.+++.||++|++||++|+++++.++++..   ...+.+.++.+..++++.|+++||+|+++++.+ .|+++...
T Consensus       124 ~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~-~d~~~~~~  202 (340)
T 3iyz_A          124 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS-CDDKRTDV  202 (340)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHh-hcCccCCc
Confidence            99999999999999999999999999999886432   223445667889999999999999999999985 56555444


Q ss_pred             CChHHHHHHHHHHHHHHhhcCCCCCccchhhhHHHHHccCCCccchhHhhhhhHHHHHHHHHHHHHhcCCC
Q 025197          172 GIVGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTE  242 (256)
Q Consensus       172 ~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~vap~~Ga~~a~~~~~~l~~~~~  242 (256)
                      ....|+.||+++.+.+..++++||+++||||||||+++.++|.++|+||++|++|+++|+++|++++.++.
T Consensus       203 ~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~  273 (340)
T 3iyz_A          203 TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV  273 (340)
T ss_pred             ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence            45689999999988888888999999999999999999999999999999999999999999999997754
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-48
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-43
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-36
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-35
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  157 bits (397), Expect = 7e-48
 Identities = 97/232 (41%), Positives = 138/232 (59%), Gaps = 6/232 (2%)

Query: 20  MRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPS--DLVVIALAHALALFAAVASSI 77
            RA +AEF++ ++F+F   GS L      K+  T+ +  D V ++LA  L++     S  
Sbjct: 11  WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG 70

Query: 78  NTSGGHVNPAVTFGALLGGRISVVRAIYYWIAQLLGAIVAALLLRFATNGMRPVGFY--- 134
           + SG H+NPAVT G LL  +ISV+RAI Y IAQ +GAIVA  +L   T+ +         
Sbjct: 71  HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130

Query: 135 VASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGIVGPLAIGFIVGANILVGGPFD 194
           +A GV  G GL +EI+ T  LV  V AT  D +R  LG  GPLAIGF V    L+   + 
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189

Query: 195 GASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTEPPIH 246
           G  +NPAR+FG +++   +++HWI+WVGPF+GA LA LIY++I+ P    + 
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLT 241
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.57
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.46
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.39
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.31
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-50  Score=345.15  Aligned_cols=218  Identities=40%  Similarity=0.668  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHhC
Q 025197           17 PDTMRAALAEFVSTLIFVFAGEGSILALDKISKATTTSPSDLVVIALAHALALFAAVASSINTSGGHVNPAVTFGALLGG   96 (256)
Q Consensus        17 ~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g   96 (256)
                      .++||++++||+||++++|+++++.+...       ....+.+.+++++|++++..+++++++||||+|||||+++++.|
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~-------~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g   74 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWA-------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGS   74 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhcc
Confidence            57899999999999999999998875321       12346788999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---cccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 025197           97 RISVVRAIYYWIAQLLGAIVAALLLRFATNGMRP---VGFYVASGVGEGHGLVLEIVMTFGLVYTVYATVIDPKRGSLGI  173 (256)
Q Consensus        97 ~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~  173 (256)
                      +++|++++.|+++|++||++|+++++.++++...   ....+.++.+..++++.|++.|++|+++++.+ .|+++.....
T Consensus        75 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~~  153 (234)
T d1ymga1          75 QMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLG  153 (234)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCCC
T ss_pred             CCChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcCc
Confidence            9999999999999999999999999999875322   23345677889999999999999999999985 5655544445


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCccchhhhHHHHHccCCCccchhHhhhhhHHHHHHHHHHHHHhcCCC
Q 025197          174 VGPLAIGFIVGANILVGGPFDGASMNPARAFGPALVGWRWRNHWIYWVGPFLGAGLAALIYEYIVIPTE  242 (256)
Q Consensus       174 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~vap~~Ga~~a~~~~~~l~~~~~  242 (256)
                      ..++.+|+.+.+.....+++||+++||||||||++.+++|+++|+||++|++|+++|+++|++++.++.
T Consensus       154 ~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~  222 (234)
T d1ymga1         154 SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL  222 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             ceeEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999987763
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure