Citrus Sinensis ID: 025206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccccccEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHH
Coil and Loop (DISEMBL)
MRSSVLRSVKTLakpagargyssesvpdrKVAVLGaaggigqpLALLMKLNPLVSRLALydiantpgvaadvgHINTRSevagymgndqlgqaledsdvviipagvprkpgmtrddlfniNAGIVKDLCSAIAKYCPNAIVNmisnpvnstvPIAAEVFKkagtynekklfgvTTLDVVRAKtfyagkanvnvaevnvpvvgghagitilplfsqatpkanlaDEDIKALTKRTQDGGTEVVeakagkgsatlsma
Flexible Loop (DISEMBL)
mrssvlrsvktlakpagargyssesvpdRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKagtynekklfgvttLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALtkrtqdggtevveakagkgsatlsma
Low Complexity Region (SEG)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYagkanvnvaevnvpvvggHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA
Disordered region (IsUnstruct)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQA****************************************
Disordered Region (DISOPRED)
******************************VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA
Disordered Region (DISEMBL)
********VKTLA************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA************
Disordered Region (DISPRO)
*************************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9LKA3	341	Malate dehydrogenase 2, m	no	no	1.0	0.750	0.824	1e-121
P17783	347	Malate dehydrogenase, mit	N/A	no	0.921	0.680	0.894	1e-121
P46487	347	Malate dehydrogenase, mit	N/A	no	1.0	0.737	0.862	1e-120
P83373	339	Malate dehydrogenase, mit	N/A	no	0.972	0.734	0.853	1e-120
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	1.0	0.750	0.812	1e-119
Q43744	341	Malate dehydrogenase, mit	N/A	no	1.0	0.750	0.785	1e-112
Q42686	373	Malate dehydrogenase, mit	N/A	no	0.886	0.608	0.732	8e-93
Q42972	356	Malate dehydrogenase, gly	no	no	0.937	0.674	0.687	2e-90
P46488	356	Malate dehydrogenase, gly	N/A	no	0.960	0.691	0.662	9e-89
P19446	356	Malate dehydrogenase, gly	N/A	no	0.960	0.691	0.650	1e-87

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/256 (82%), Positives = 238/256 (92%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           VVEAKAGKGSATLSMA
Sbjct: 242 VVEAKAGKGSATLSMA 257

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/236 (89%), Positives = 228/236 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMA 262

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/262 (86%), Positives = 239/262 (91%), Gaps = 6/262 (2%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRT 234
           TLDVVRAKTFYAGKA V V EVNVPVVGGHAGITILPLFSQA PKANLADEDIKALTKRT
Sbjct: 181 TLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRT 240

Query: 235 QDGGTEVVEAKAGKGSATLSMA 256
           QDGGTEVVEAKAGKGSATLSMA
Sbjct: 241 QDGGTEVVEAKAGKGSATLSMA 262

Eucalyptus gunnii (taxid: 3933)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 232/253 (91%), Gaps = 4/253 (1%)

Query: 4   SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
           S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA
Sbjct: 6   SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIA 61

Query: 64  NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
            TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAG
Sbjct: 62  GTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121

Query: 124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
           IV+ L +AIAKYCP+AI+NMISNPVNSTVPIA+EV KKAG Y+EKKLFGVTTLDVVRAKT
Sbjct: 122 IVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKT 181

Query: 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
           FYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D+ IKALTKRTQDGGTEVVE
Sbjct: 182 FYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVE 241

Query: 244 AKAGKGSATLSMA 256
           AKAGKGSATLSMA
Sbjct: 242 AKAGKGSATLSMA 254

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/256 (81%), Positives = 234/256 (91%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           VVEAKAGKGSATLSMA
Sbjct: 242 VVEAKAGKGSATLSMA 257

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/256 (78%), Positives = 226/256 (88%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L SAIAKYCP+A+VNMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            KT YAGKANV VAEVNVP + GHAG+TILPLFSQATP+A L+ + +   TKRTQDGGTE
Sbjct: 182 VKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           V EAKAGKGSATLSMA
Sbjct: 242 VEEAKAGKGSATLSMA 257

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1

 Score =  340 bits (871), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 167/228 (73%), Positives = 197/228 (86%), Gaps = 1/228 (0%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKVAVLGAAGGIGQPL++LMK+N  VS L+LYDIA TPGVAADV HINT+++V G+   D
Sbjct: 63  RKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKD 121

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
            L +AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+DL +A+ ++CP A++N+ISNPV
Sbjct: 122 GLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPV 181

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGIT 208
           NSTVPIAAE  KK G Y+++K+ GVTTLDVVRAKTFYA K  ++VA V+VPVVGGHAG+T
Sbjct: 182 NSTVPIAAEQLKKMGVYDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVT 241

Query: 209 ILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           ILPLFSQATPKA ++ E + ALTKRTQDGGTEVV+AKAGKGSATLSMA
Sbjct: 242 ILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSATLSMA 289

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  331 bits (849), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/240 (68%), Positives = 190/240 (79%)

Query: 17  GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN 76
           G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+N
Sbjct: 33  GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK C
Sbjct: 93  TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV 196
           PNAIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVTTLDVVRA TF A    ++  +V
Sbjct: 153 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDV 212

Query: 197 NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           NVPV+GGHAG+TILPL SQ  P  +   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 213 NVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMA 272

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  326 bits (836), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 169/255 (66%), Positives = 194/255 (76%), Gaps = 9/255 (3%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF A    ++  +VNVPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEV 257

Query: 242 VEAKAGKGSATLSMA 256
           VEAKAG GSATLSMA
Sbjct: 258 VEAKAGAGSATLSMA 272

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  322 bits (825), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/255 (65%), Positives = 192/255 (75%), Gaps = 9/255 (3%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF A    ++  +V+VPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEV 257

Query: 242 VEAKAGKGSATLSMA 256
           VEAKAG GSATLSMA
Sbjct: 258 VEAKAGAGSATLSMA 272

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255566555	345	malate dehydrogenase, putative [Ricinus	1.0	0.742	0.865	1e-123
449438883	347	PREDICTED: malate dehydrogenase, mitocho	0.929	0.685	0.903	1e-120
224114557	341	predicted protein [Populus trichocarpa]	0.984	0.739	0.855	1e-120
7798706	352	malate dehydrogenase [Vitis vinifera]	1.0	0.727	0.827	1e-119
21388550	344	putative mitochondrial NAD-dependent mal	1.0	0.744	0.828	1e-119
145332399	316	malate dehydrogenase 2 [Arabidopsis thal	1.0	0.810	0.824	1e-119
350536645	346	mitochondrial malate dehydrogenase [Sola	1.0	0.739	0.831	1e-119
21388544	346	putative mitochondrial NAD-dependent mal	1.0	0.739	0.823	1e-119
15232468	341	malate dehydrogenase 2 [Arabidopsis thal	1.0	0.750	0.824	1e-119
126896	347	RecName: Full=Malate dehydrogenase, mito	0.921	0.680	0.894	1e-119

>gi|255566555|ref|XP_002524262.1| malate dehydrogenase, putative [Ricinus communis] gi|223536453|gb|EEF38101.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/261 (86%), Positives = 238/261 (91%), Gaps = 5/261 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MRSS+ RSVK L   + +     RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS
Sbjct: 1   MRSSLFRSVKALGSTSSSSHLLRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            LALYDIANTPGVAADV HINTRS+V GY+G DQLG+ALE SDVVIIPAGVPRKPGMTRD
Sbjct: 61  NLALYDIANTPGVAADVSHINTRSDVKGYVGEDQLGKALEGSDVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTT
Sbjct: 121 DLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA V VAEVNVPVVGGHAGITILPL SQATPKANL DE+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLLSQATPKANLPDEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMA 256
           DGGTEVVEAKAGKGSATLSMA
Sbjct: 241 DGGTEVVEAKAGKGSATLSMA 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438883|ref|XP_004137217.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449483204|ref|XP_004156521.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/238 (90%), Positives = 227/238 (95%)

Query: 19  RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
           R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDI  TPGVAADVGH+NTR
Sbjct: 25  RTFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIGATPGVAADVGHVNTR 84

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           SEV GYMG +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPN
Sbjct: 85  SEVTGYMGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPN 144

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV 198
           A+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNV
Sbjct: 145 ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNV 204

Query: 199 PVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           PVVGGHAGITILPLFSQATPKANL D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 205 PVVGGHAGITILPLFSQATPKANLTDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMA 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114557|ref|XP_002316794.1| predicted protein [Populus trichocarpa] gi|118484579|gb|ABK94163.1| unknown [Populus trichocarpa] gi|222859859|gb|EEE97406.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/256 (85%), Positives = 235/256 (91%), Gaps = 4/256 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+LA    +    RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS LALY
Sbjct: 2   MLRSIKSLATSPSSHILRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVSSLALY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV+GY G  +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVSHINTRSEVSGYSGEAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 122 NAGIVKGLCQAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D +I ALTKRTQDGGTE
Sbjct: 182 AKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDAEITALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           VVEAKAGKGSATLSMA
Sbjct: 242 VVEAKAGKGSATLSMA 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7798706|gb|AAF69802.1|AF195869_1 malate dehydrogenase [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 239/266 (89%), Gaps = 10/266 (3%)

Query: 1   MRSSVLRSVKT----LAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN 51
           M++S+ RS +T    ++ P+ +     R Y  ES P+RKVAVLGAAGGIGQPLALLMKLN
Sbjct: 1   MKASLFRSAETALRRVSSPSASSHLLRRSYCVESKPERKVAVLGAAGGIGQPLALLMKLN 60

Query: 52  PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPG 111
           PLVS L+LYDIA TPGVAADV HINTRS+VAGYMG+DQLGQALE +D+VIIPAGVPRKPG
Sbjct: 61  PLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVPRKPG 120

Query: 112 MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171
           MTRDDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLF
Sbjct: 121 MTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 180

Query: 172 GVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NLADEDIKAL 230
           GVTTLDVVRAKTFYAGKA V VAE NVPVVGGHAGITILPLFSQATPK+ NL+DEDI AL
Sbjct: 181 GVTTLDVVRAKTFYAGKAKVPVAEANVPVVGGHAGITILPLFSQATPKSNNLSDEDIVAL 240

Query: 231 TKRTQDGGTEVVEAKAGKGSATLSMA 256
           TKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 241 TKRTQDGGTEVVEAKAGKGSATLSMA 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21388550|emb|CAD33243.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/257 (82%), Positives = 237/257 (92%), Gaps = 1/257 (0%)

Query: 1   MRSSVLRSVKTLAKPAGAR-GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL 59
           MR+S+LR++      AG R G++SES PDRKVA+LGAAGGIGQPL+LLMKLNPLVSRLAL
Sbjct: 1   MRTSMLRTLARRTSTAGTRRGFASESAPDRKVAILGAAGGIGQPLSLLMKLNPLVSRLAL 60

Query: 60  YDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFN 119
           YDIA TPGVAADV HINTRSE+ GY G +QLG+ALE +DVVIIPAGVPRKPGMTRDDLFN
Sbjct: 61  YDIAGTPGVAADVSHINTRSEILGYAGEEQLGKALEGADVVIIPAGVPRKPGMTRDDLFN 120

Query: 120 INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVV 179
           INAGIVK LC+AIAKYCP+A+VN+ISNPVNSTVPIA+EVFKKAGTY+EK+LFGVTTLDVV
Sbjct: 121 INAGIVKSLCTAIAKYCPHALVNVISNPVNSTVPIASEVFKKAGTYDEKRLFGVTTLDVV 180

Query: 180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
           RAKTFYAGKA VNVA+V VPVVGGHAG+TILPLFSQATP ANL+ E+I+ALTKRTQDGGT
Sbjct: 181 RAKTFYAGKAKVNVADVIVPVVGGHAGVTILPLFSQATPSANLSSEEIEALTKRTQDGGT 240

Query: 240 EVVEAKAGKGSATLSMA 256
           EVVEAKAGKGSATLSMA
Sbjct: 241 EVVEAKAGKGSATLSMA 257

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332399|ref|NP_001078156.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|332642084|gb|AEE75605.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/256 (82%), Positives = 238/256 (92%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           VVEAKAGKGSATLSMA
Sbjct: 242 VVEAKAGKGSATLSMA 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536645|ref|NP_001234001.1| mitochondrial malate dehydrogenase [Solanum lycopersicum] gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Solanum lycopersicum]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/261 (83%), Positives = 237/261 (90%), Gaps = 5/261 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AGA     RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEVAG+ G +QLGQALE +DVVIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL+ E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSYEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMA 256
           DGGTEVVEAKAGKGS TLS+A
Sbjct: 241 DGGTEVVEAKAGKGSXTLSIA 261

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21388544|emb|CAD33240.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/261 (82%), Positives = 237/261 (90%), Gaps = 5/261 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AG      RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGESYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEV G+ G +QLG+ALE +D+VIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL++E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSNEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMA 256
           DGGTEVVEAKAGKGSATLSMA
Sbjct: 241 DGGTEVVEAKAGKGSATLSMA 261

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232468|ref|NP_188120.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|75311246|sp|Q9LKA3.1|MDHM2_ARATH RecName: Full=Malate dehydrogenase 2, mitochondrial; AltName: Full=mNAD-MDH 2; Flags: Precursor gi|8777485|dbj|BAA97065.1| NAD-dependent malate dehydrogenase [Arabidopsis thaliana] gi|15010582|gb|AAK73950.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|20147389|gb|AAM10404.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|332642083|gb|AEE75604.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/256 (82%), Positives = 238/256 (92%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMA 256
           VVEAKAGKGSATLSMA
Sbjct: 242 VVEAKAGKGSATLSMA 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126896|sp|P17783.1|MDHM_CITLA RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|18297|emb|CAA35239.1| unnamed protein product [Citrullus lanatus subsp. vulgaris]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/236 (89%), Positives = 228/236 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMA 262

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.996	0.747	0.764	6.4e-99
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.996	0.747	0.752	2.5e-97
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.898	0.649	0.660	4e-74
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.898	0.633	0.656	5.1e-74
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.968	0.733	0.601	1.7e-73
UNIPROTKB|J9NY79	338	J9NY79 "Malate dehydrogenase"	0.972	0.736	0.595	4.6e-73
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.968	0.733	0.597	7.5e-73
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.968	0.733	0.593	9.6e-73
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.968	0.733	0.593	1.2e-72
RGD|619719	338	Mdh2 "malate dehydrogenase 2,	0.968	0.733	0.593	1.2e-72

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 195/255 (76%), Positives = 220/255 (86%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMA 256
             VEAKAGKGSATLSMA
Sbjct:   243 VEAKAGKGSATLSMA 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 192/255 (75%), Positives = 217/255 (85%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMA 256
             VEAKAGKGSATLSMA
Sbjct:   243 VEAKAGKGSATLSMA 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 152/230 (66%), Positives = 174/230 (75%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AIVN+ISN
Sbjct:   101 QPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGT++ KKL GVT LDVVRA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             +TILPL SQ  P  +   ++I+ LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct:   221 VTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMA 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 151/230 (65%), Positives = 172/230 (74%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL  AL   D+VIIPAG+PRKPGMTRDDLF INAGIVK LC  +AK CPNAIVN+ISN
Sbjct:   101 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGTY+ KKL GVTTLDV RA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             +TILPL SQ  P ++   ++I+ LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct:   221 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMA 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 151/251 (60%), Positives = 184/251 (73%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPLALL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PIA EVFKK G Y+  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFI 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +L  + + A+T R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMA 256
             AG GSATLSMA
Sbjct:   242 AGAGSATLSMA 252

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NY79 J9NY79 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 150/252 (59%), Positives = 185/252 (73%)

Query:     8 SVKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64
             ++  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPLALL+K +PLVSRL LYDIA+
Sbjct:     1 TLSALARPAGAALHRSFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAH 60

Query:    65 TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI 124
             TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTR+DLFN NA I
Sbjct:    61 TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRNDLFNTNASI 120

Query:   125 VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
             V  L +A A++CP A++ +ISNPVNST+PIA EVFKK G Y+  K+FGVTTLD+VRA TF
Sbjct:   121 VATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTF 180

Query:   185 YXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                                HAG TI+PL SQ TPK +L  + + A+T R Q+ GTEVV+A
Sbjct:   181 IAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKA 240

Query:   245 KAGKGSATLSMA 256
             KAG GSATLSMA
Sbjct:   241 KAGAGSATLSMA 252

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 150/251 (59%), Positives = 182/251 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A+V +I+NPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMA 256
             AG GSATLSMA
Sbjct:   242 AGAGSATLSMA 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 149/251 (59%), Positives = 182/251 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMA 256
             AG GSATLSMA
Sbjct:   242 AGAGSATLSMA 252

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 149/251 (59%), Positives = 181/251 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+    + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMA 256
             AG GSATLSMA
Sbjct:   242 AGAGSATLSMA 252

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 149/251 (59%), Positives = 181/251 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+P GA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPVGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMA 256
             AG GSATLSMA
Sbjct:   242 AGAGSATLSMA 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=ISO;IDA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO;ISS

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.7851	1.0	0.7507	N/A	no
Q0HZ38	MDH_SHESR	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7202	yes	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6370	0.9570	0.7248	yes	no
A1S3C4	MDH_SHEAM	1, ., 1, ., 1, ., 3, 7	0.6403	0.875	0.7202	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6411	0.9570	0.7248	yes	no
B5XSQ7	MDH_KLEP3	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7179	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.8625	1.0	0.7377	N/A	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.8537	0.9726	0.7345	N/A	no
A3QB91	MDH_SHELP	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7202	yes	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.8940	0.9218	0.6801	N/A	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7179	yes	no
Q8DEC2	MDH_VIBVU	1, ., 1, ., 1, ., 3, 7	0.6447	0.875	0.7225	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6370	0.9570	0.7248	yes	no
A4YAE8	MDH_SHEPC	1, ., 1, ., 1, ., 3, 7	0.6140	0.875	0.7202	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.6447	0.875	0.7225	yes	no
A8H0U0	MDH_SHEPA	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7202	yes	no
Q0HEW2	MDH_SHESM	1, ., 1, ., 1, ., 3, 7	0.6184	0.875	0.7202	yes	no
B0TUH8	MDH_SHEHH	1, ., 1, ., 1, ., 3, 7	0.6228	0.875	0.7202	yes	no
P82177	MDH_SHEON	1, ., 1, ., 1, ., 3, 7	0.6140	0.875	0.7202	yes	no
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.6228	0.875	0.7179	yes	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.6315	0.875	0.7202	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5976	0.9648	0.7243	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6096	0.875	0.7179	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6330	0.9570	0.7248	yes	no
B1KGG7	MDH_SHEWM	1, ., 1, ., 1, ., 3, 7	0.6228	0.875	0.7202	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6370	0.9570	0.7248	yes	no
A7MNR3	MDH_CROS8	1, ., 1, ., 1, ., 3, 7	0.6140	0.875	0.7179	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.7324	0.8867	0.6085	N/A	no
A0L113	MDH_SHESA	1, ., 1, ., 1, ., 3, 7	0.6228	0.875	0.7202	yes	no
Q12R11	MDH_SHEDO	1, ., 1, ., 1, ., 3, 7	0.6271	0.875	0.7202	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6330	0.9570	0.7248	yes	no
A1RFX8	MDH_SHESW	1, ., 1, ., 1, ., 3, 7	0.6140	0.875	0.7202	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6096	0.875	0.7179	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.6315	0.875	0.7202	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6096	0.875	0.7179	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6096	0.875	0.7179	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.37	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	1e-174
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-156
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-118
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-115
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-103
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	3e-70
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-57
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	5e-46
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	6e-43
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-36
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-32
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	6e-28
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	7e-28
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-27
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	8e-27
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	1e-26
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	2e-21
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-20
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	2e-19
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	6e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	7e-18
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-16
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	5e-16
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	3e-15
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-14
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	3e-13
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	3e-13
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	2e-12
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-11
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	2e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-09
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	1e-06
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	3e-06

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  481 bits (1241), Expect = e-174
 Identities = 181/239 (75%), Positives = 205/239 (85%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
               +    P  KVAVLGAAGGIGQPL+LLMK+NPLVS L LYDIANTPGVAADV HINT
Sbjct: 8   RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT 67

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
            ++V G++G+DQLG AL+ +D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC A+AK+CP
Sbjct: 68  PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP 127

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN 197
           NA+VN+ISNPVNSTVPIAAEV KKAG Y+ KKLFGVTTLDVVRA TF A K  ++ A+V+
Sbjct: 128 NALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVD 187

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           VPVVGGHAGITILPL SQATPK +  DE+I+ALTKR Q+GGTEVVEAKAG GSATLSMA
Sbjct: 188 VPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA 246

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  435 bits (1121), Expect = e-156
 Identities = 162/227 (71%), Positives = 191/227 (84%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KLNPLVS LALYDI NTPGVAAD+ HINT ++V GY+G ++
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L +AL+ +DVV+IPAGVPRKPGMTRDDLFNINAGIV+DL +A+AK CP A++ +ISNPVN
Sbjct: 62  LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KKAG Y+ K+LFGVTTLDVVRA TF A    ++ A+VNVPV+GGH+G+TI
Sbjct: 122 STVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           LPL SQ  P      E+I+ALT R Q GG EVV+AKAG GSATLSMA
Sbjct: 182 LPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMA 228

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  340 bits (874), Expect = e-118
 Identities = 147/227 (64%), Positives = 177/227 (77%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KL P VS L+LYDIA   GVAAD+ HI T + V G+ G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL+ +DVV+IPAGVPRKPGMTRDDLFN+NAGIVKDL +A+A+ CP A++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KK G Y+  KLFGVTTLD+VRA TF A     +  EVNVPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +PL SQ   K    ++ ++AL  R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMA 227

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  331 bits (851), Expect = e-115
 Identities = 140/229 (61%), Positives = 169/229 (73%), Gaps = 4/229 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLDV+R++TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM 
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG 228

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  303 bits (778), Expect = e-103
 Identities = 144/227 (63%), Positives = 175/227 (77%), Gaps = 2/227 (0%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+K NP VS L+LYDI   PGVAAD+ HI+T ++V GY   + 
Sbjct: 10  KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGEL 69

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             +AL  +D+V+I AGVPRKPGMTRDDLFN NA IV+DL +A+A   P AIV ++SNPVN
Sbjct: 70  WEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAE  KKAG Y+ +KLFGVTTLDVVRA+ F A    +N  +VNVPVVGGH+G+TI
Sbjct: 130 STVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTI 189

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +PL SQ T  + L +E ++ +T R Q GG EVV+AK G GSATLSMA
Sbjct: 190 VPLLSQ-TGLS-LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMA 234

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  218 bits (557), Expect = 3e-70
 Identities = 95/238 (39%), Positives = 131/238 (55%), Gaps = 17/238 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA G +G  LA L+ L  L S L L DI      GVA D+ H          + 
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT 59

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   + L+ +D+V+I AGVPRKPGMTR DL   NA IVKD+  AIAKY P+AIV +++N
Sbjct: 60  GDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    IA +    +G    + +   T LD  R +TF A K  V+  +V+  V+G H G
Sbjct: 120 PVDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 207 ITILPLFSQAT----PKANLA----DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
            T++PL+SQAT    P   L     +ED++ L +R ++ G E++EAK          A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK--GAGTYYGPA 231

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  179 bits (456), Expect = 2e-57
 Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA GG+G  LA  + L  L   L L DI      GVA D+ H +T   V G +G
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +AL+D+DVV+I AGVPRKPGMTR DL N NAGI KD+  AIAK  P+AIV ++SN
Sbjct: 61  GDD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    IA +V   +G   E+ +  
Sbjct: 120 PVDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  155 bits (394), Expect = 5e-46
 Identities = 86/234 (36%), Positives = 132/234 (56%), Gaps = 24/234 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAG 83
           K++++GA G +G  LA L+ L  L   + L+DI    P G A D+          +++ G
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND   + +  SDVV+I AGVPRKPGM+RDDL  INA I+KD+   I KY P+AIV +
Sbjct: 62  --TNDY--EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV++   +A     K   + + ++ G+   LD  R +TF A + NV+V +V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 203 GHAGITILPLFSQAT-----PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GH G +++PL   +T      +  L+ E +  + +RT+ GG E+V      GSA
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSA 225

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  147 bits (373), Expect = 6e-43
 Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 24/233 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAGY 84
           ++++GA G +G  LA L+ L  L   + L DI    P G A D+      + + ++V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTG- 57

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             ND   + +  SDVV+I AG+PRKPGM+RDDL   NA IVK++   I KY PNAIV ++
Sbjct: 58  -TNDY--EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NP++        V  KA  +   ++ G+   LD  R + F A +  V+V +V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 204 HAGITILPLFSQAT-----PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           H G T++PL   +T         +  E+I  + +RT++GG E+V      GSA
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSA 221

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  129 bits (326), Expect = 2e-36
 Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 31  VAVLGAAGGIGQPLALLM--KLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMG 86
           +AV+GA G +G  LA  +      L   L LYDI      GVA D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +A +D+DVVII AGV RKPGM R DL   N  IVK++   I KY P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    I   +  +     ++K+ G+ TLD +R +   A K  V+  +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 207 ITILPLFSQATP 218
            + +P +S    
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 2e-32
 Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 21/240 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K++++GA G IG  +ALL+    L   + LYD+      G A D+ H +T       +  
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
               + ++DSDVV+I AGV RK  MTR+DL  IN  I+K +  ++ KYCPNA V  ++NP
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           ++       +VF++       K+ G+   LD  R +   A K  V+  +V+  V+GGH G
Sbjct: 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH-G 179

Query: 207 ITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             ++PL           S    K  + +++I  + K+T++ G E+V+    KGSA  + A
Sbjct: 180 DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAPA 238

Length = 319

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  108 bits (271), Expect = 6e-28
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 43/243 (17%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNP------LVSR-----------LALYDIANTPGVAADV 72
           KV+++GA+G +G   ALL+          L+SR           L +YD     G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 73  GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI 132
              +  S+VAG             SD+VII AGVPRK GM+R DL   NA IVK     I
Sbjct: 62  KISSDLSDVAG-------------SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 133 AKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANV 191
           A++ P+  + +++NPV+     A    K++G +++ ++FG+ T LD +R K   A   NV
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 192 NVAEVNVPVVGGHAGITILPLFSQAT----PKANLA---DEDIKALTKRTQDGGTEVVEA 244
           +++EV+  ++G H G +++PL S  +    P        D D++ + +  ++ G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 245 KAG 247
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  108 bits (271), Expect = 7e-28
 Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 34/249 (13%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TR 78
            +  RK++++G+ G IG  +A L+ L  L   + L+DI  N P G A D+ H N    + 
Sbjct: 3   MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSN 60

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIA 133
           S+V G   N+   + +  SDVVI+ AG+ ++PG +     RDDL  +NA I+ ++   I 
Sbjct: 61  SKVIG--TNNY--EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIK 116

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           KYCPNA V +I+NP++  V    ++ ++     + K+ G+   LD  R +T+ A K  VN
Sbjct: 117 KYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVN 172

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVV 242
             +V+  V+G H G  ++PL    T           K  +  E+I  + +RT++ G E+V
Sbjct: 173 PRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231

Query: 243 EAKAGKGSA 251
           +   G GSA
Sbjct: 232 DL-LGTGSA 239

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  107 bits (269), Expect = 1e-27
 Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 25/235 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVAGY 84
           + ++GA G +G  +A  +    L S L L D+      G A D+ H    + T + V G 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
              D       D+D+V+I AG PRKPG TR DL N NA I++ + + + KY P+AI+ ++
Sbjct: 60  DYAD-----AADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           SNPV+    I   V +K     + ++ G  T LD  R ++  A K +V+   V+  V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 204 HAGITILPLFSQAT-------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           H G + +  +S AT         A     D++A+ +  +  G E++  K      
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG 224

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  101 bits (254), Expect = 8e-27
 Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 12/93 (12%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQATPKANLA 223
           TTLD  RA+TF A K  V+   VNV V+G H+G          +TI+PL SQ        
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 224 DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           D +++ L +R Q+ G EV+EAKA  GS T SMA
Sbjct: 61  DWELEELIERVQNAGYEVIEAKA--GSTTYSMA 91

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  104 bits (262), Expect = 1e-26
 Identities = 62/161 (38%), Positives = 101/161 (62%), Gaps = 10/161 (6%)

Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SD+V+I AG+PRKPGM+R+DL ++NAGIV+++   I ++ PN I+ ++SNP+++   +A
Sbjct: 69  NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA 128

Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQ 215
            +   K+G   E+ +     LD  R +TF A +  V+V +V   V+GGH G  ++PL   
Sbjct: 129 WQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGH-GDAMVPLVRY 184

Query: 216 AT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           +T    P A+L + E I  + +RT+ GG E+V     +GSA
Sbjct: 185 STVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSA 224

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 37/244 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVA 82
            KVA++GA G +G   A  + L  L S + L DI  A   G A D+ H    +      A
Sbjct: 1   MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 83  G-YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           G Y          + +DVV+I AG  +KPG TR DL   N  I K++   I KY P+AI+
Sbjct: 60  GDY-------ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +++NPV+    +   V  K       ++ G  T LD  R +        V+   V+  +
Sbjct: 113 LVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYI 168

Query: 201 VGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           +G H G + + ++S A                   +E  + + +  ++   E++E    K
Sbjct: 169 IGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RK 224

Query: 249 GSAT 252
           G AT
Sbjct: 225 G-AT 227

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 20/230 (8%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKV ++GA G +G   A  +    +   L L DI N      +   +             
Sbjct: 1   RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKI 58

Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           + G     +D+D+V+I AG P+KPG TR DL   NA I+K +   I     + I  + SN
Sbjct: 59  KAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHA 205
           PV+    +   V +K     + ++ G  T+LD  R +   A K NV+   V+  V+G H 
Sbjct: 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEH- 173

Query: 206 GITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           G +    +S  T           +  L++ D+  + +  +  G E++  K
Sbjct: 174 GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK 223

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 32/229 (13%)

Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEV--AGYMGND 88
           AG +G   A  +    +   + L DI      G A D+ H    + T  ++    Y    
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY---- 59

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
                 +D+D+V+I AG P+KPG TR +L   N  I+K +   + K   + I  + +NPV
Sbjct: 60  ---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           +    I   V  K   + + ++ G  T LD  R +   A K  V+   V+  ++G H G 
Sbjct: 117 D----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GD 171

Query: 208 TILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           + +P++S AT            K    D D++ + K  +D   E++  K
Sbjct: 172 SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK 220

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 80/246 (32%), Positives = 105/246 (42%), Gaps = 36/246 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        L  K  P+V  L L DI         V       E  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGV-----AMELE 57

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +      +A +D D  ++    PRKPGM R DL + N  I K+   A+ K
Sbjct: 58  DCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK 117

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA+   K A     K    +T LD  RAK   A KA V V
Sbjct: 118 VAKKDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPV 174

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAK 245
           ++V NV + G H+  T +P F+ AT       E IK             Q  G  V+EA+
Sbjct: 175 SDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233

Query: 246 AGKGSA 251
            G  SA
Sbjct: 234 -GASSA 238

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 81.2 bits (201), Expect = 7e-18
 Identities = 68/205 (33%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
            V + GAAG IG  L        L     P++  L L DI   P + A  G      E  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI--PPAMKALEG---VVMELQ 54

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 + G +      +A +D DV I+    PRKPGM R DL   NA I K+   A+ K
Sbjct: 55  DCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK 114

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
              P   V ++ NP N+   IA    K A     K    +T LD  RAK   A K  V V
Sbjct: 115 VAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRV 171

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT 217
           ++V NV + G H+  T +P  S A 
Sbjct: 172 SDVKNVIIWGNHSN-TQVPDLSNAV 195

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 62/244 (25%), Positives = 97/244 (39%), Gaps = 48/244 (19%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHI-----NTRSEV 81
            KV ++G  G +G   A  +    +   L + DI      G A D+ H       T+   
Sbjct: 7   NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
             Y          +D+D+V+I AG P+KPG TR DL   N  I K +   +     + I 
Sbjct: 66  GDY-------SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---------TTLDVVRAKTFYAGKANVN 192
            + SNPV+              TY   KL G          T+LD  R +   + K +V+
Sbjct: 119 LVASNPVDIL------------TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVD 166

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEV 241
              V+  ++G H G T  P++S A                  +ED+  + +  +D   E+
Sbjct: 167 PRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225

Query: 242 VEAK 245
           +E K
Sbjct: 226 IEKK 229

Length = 315

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 70/252 (27%), Positives = 103/252 (40%), Gaps = 42/252 (16%)

Query: 30  KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH-------INT 77
           K+ V+GA G +G   L   + L  L S + L D+    GVA     D  H        NT
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNT 56

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKY 135
           +     Y           D+D+++I AG    PG T  R DL   NA I++++   I K 
Sbjct: 57  KIRAGDY-------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV 109

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
              A++ +I+NP++  V IAA  F     Y   K+ G  T LD  R +   A K  V+  
Sbjct: 110 TKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPK 165

Query: 195 EVNVPVVGGHAGITILPLFSQATPKANLADE----------DIKALTKRTQDGGTEVVEA 244
            V   V+G H G    P++S         DE          D   L +       +V   
Sbjct: 166 NVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR 224

Query: 245 KAGKGSATLSMA 256
           K G  +A ++ +
Sbjct: 225 K-GWTNAGIAKS 235

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 71/259 (27%), Positives = 105/259 (40%), Gaps = 49/259 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSR-----------LALYDIANTPGVAADVGHINTR 78
           +V V GAAG I   L       P++++           L L DI         V      
Sbjct: 4   RVLVTGAAGQIAYSLL------PMIAKGDVFGPDQPVILHLLDIPPALKALEGV-----V 52

Query: 79  SE--------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130
            E        +   +      +A +D DV I+   +PRK GM R DL   N  I K+   
Sbjct: 53  MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGE 112

Query: 131 AIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189
           A+ KY   N  V ++ NP N+   I     K A +  ++    +T LD  RAK+  A K 
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKL 169

Query: 190 NVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTK-----------RTQDG 237
            V V++V NV + G H+  T  P  + AT + N   +  +   K             Q  
Sbjct: 170 GVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKR 228

Query: 238 GTEVVEAKAGKGSATLSMA 256
           G  V++A+  K S+ +S A
Sbjct: 229 GAAVIKAR--KLSSAMSAA 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 71/247 (28%), Positives = 99/247 (40%), Gaps = 38/247 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKL---------NPLVSRLALYDIANT----PGVA---ADVG 73
           +VAV GAAG IG   +LL ++          P++  L L ++        GVA    D  
Sbjct: 4   RVAVTGAAGQIGY--SLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMELEDCA 59

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                  V      D    A +D+D  ++    PR PGM R DL   N  I      A+ 
Sbjct: 60  FPLLAEIVIT----DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALN 115

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                +  V ++ NP N+   IA    K A          +T LD  RAK+  A KA V 
Sbjct: 116 DVASRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVP 172

Query: 193 VAEV-NVPVVGGHAGITILPLFSQATPKANLADEDI-------KALTKRTQDGGTEVVEA 244
           V +V N+ + G H+  T  P F+ AT     A E I              Q  G  +++A
Sbjct: 173 VTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA 231

Query: 245 KAGKGSA 251
           + G  SA
Sbjct: 232 R-GASSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 71/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV- 81
           +V V GAAG IG  L        +L K  P++  L L DI     V   V       E+ 
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGV-----VMELM 53

Query: 82  -------AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                   G +       A  D DV I+    PRK GM R DL + N  I K+   A+ K
Sbjct: 54  DCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK 113

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   + +     A +   K    +T LD  RA    A +A V V
Sbjct: 114 LAKKDCKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPV 170

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR-----------TQDGGTEV 241
           ++V NV + G H+  T  P  + AT       + ++   K             Q  G  +
Sbjct: 171 SDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAI 229

Query: 242 VEAKAGKGSATLSMA 256
           + A+  K S+ LS A
Sbjct: 230 IRAR--KLSSALSAA 242

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNA 139
           +AG +   +L +A +D D   + A VP KPG  R DL   N  I K    A+++Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199
            V +I NPVN+   +A      A   + +    +  LD  RA +  A K  V V  +   
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 200 VVGGHAGITILPLFSQAT 217
           VV G+   +++   + A 
Sbjct: 162 VVWGNHAESMVADLTHAE 179

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 78/250 (31%), Positives = 106/250 (42%), Gaps = 44/250 (17%)

Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P+   L L +I   P + A  G      E  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPV--ILQLLEI--PPALKALEG---VVMELD 58

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +  D    A +D+DV ++    PR PGM R DL   N  I      A+ +
Sbjct: 59  DCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE 118

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA    K A     +    +T LD  RA +  A KA V V
Sbjct: 119 VAARDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPV 175

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT----PKAN-------LADEDIKALTKRTQDGGTEV 241
           A++  + V G H+  T  P F  AT    P A        L D  I  + KR    G  +
Sbjct: 176 ADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKR----GAAI 230

Query: 242 VEAKAGKGSA 251
           +EA+ G  SA
Sbjct: 231 IEAR-GASSA 239

Length = 326

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 30  KVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           KV V+G    G+   +++L K   L   L L D+      G A D+ H       + ++ 
Sbjct: 5   KVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GSAFLK 56

Query: 87  N-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           N     D+      +S VVI+ AG  +  G +R DL   N  I K +   + KY PNAI+
Sbjct: 57  NPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            ++SNPV+    I   V  K     + ++ G    LD  R +   A +  V  + V+  +
Sbjct: 117 LVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWI 172

Query: 201 VGGH 204
           +G H
Sbjct: 173 IGEH 176

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150
           +A +  ++ ++  G PRK GM R D+ + N  I K   SA+ K+  P+  V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              I  E    A +  EK +  +T LD  RA    + +  V V++V NV + G H+  T 
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS-TQ 169

Query: 210 LPLFSQATPKANLADEDIKALT-----------KRTQDGGTEVVEAKAGKGSATLSMA 256
            P  + AT K    ++ ++ L               Q  G  +++A+  K S+ LS A
Sbjct: 170 YPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAA 225

Length = 309

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 17/201 (8%)

Query: 22  SSESVPDR---KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGH-- 74
           SS   P R   KV+V+G  G +G  +A  +    L   LAL D+      G   D+ H  
Sbjct: 28  SSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
               R+++               SD+ I+ AG  + PG +R +L   N  + + +   +A
Sbjct: 87  AFLPRTKILA----STDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELA 142

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           KY P+ I+ ++SNPV+    +A   +K +G    + +   T LD  R +   A   +VN 
Sbjct: 143 KYSPDTILLIVSNPVDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNA 199

Query: 194 AEVNVPVVGGHAGITILPLFS 214
            +V   +VG H G + + L+S
Sbjct: 200 QDVQAYIVGEH-GDSSVALWS 219

Length = 350

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNSTVP 153
           +D++  ++    PR PGM R DL +IN  I  +   A+      N  V ++ NP N+   
Sbjct: 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234

Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPL 212
           I     K A     K    +T LD  RAK   A KA V   +V NV + G H+  T +P 
Sbjct: 235 IC---LKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPD 290

Query: 213 FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           F  A        E I    K  ++  T  V+ + G
Sbjct: 291 FLNAKINGLPVKEVITD-HKWLEEEFTPKVQKRGG 324

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS 150
           +  ED+D  ++    PR PGM R DL +IN  I  D   A+      N  V ++ NP N+
Sbjct: 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              IA    K A     K    +T LD  RAK   A K+      V NV + G H+  T 
Sbjct: 176 NALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQ 231

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +P F  A      A E IK  TK  ++  T  V+ + G
Sbjct: 232 VPDFVNAKIGGRPAKEVIKD-TKWLEEEFTPTVQKRGG 268

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PLN00106	323	malate dehydrogenase	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PLN02602	350	lactate dehydrogenase	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PRK15076	431	alpha-galactosidase; Provisional	99.94
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.94
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.9
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.89
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.86
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.82
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.72
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.15
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.15
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.03
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.9
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.89
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.89
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.89
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.88
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.87
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.85
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.82
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.8
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.69
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.68
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.68
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.65
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.64
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.62
PLN02427	386	UDP-apiose/xylose synthase	98.6
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.6
PLN02206	442	UDP-glucuronate decarboxylase	98.59
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.58
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.5
PLN00198	338	anthocyanidin reductase; Provisional	98.48
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.46
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.45
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.45
PLN02572	442	UDP-sulfoquinovose synthase	98.43
PLN02650	351	dihydroflavonol-4-reductase	98.43
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.43
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.43
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.41
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.41
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.4
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.37
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.37
CHL00194	317	ycf39 Ycf39; Provisional	98.36
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.33
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.33
PLN02214	342	cinnamoyl-CoA reductase	98.3
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.29
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.27
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.27
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.26
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.23
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.2
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.2
PLN02778	298	3,5-epimerase/4-reductase	98.19
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.19
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.18
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.18
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.17
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.17
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.16
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.16
PLN03209	576	translocon at the inner envelope of chloroplast su	98.15
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.14
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.14
PLN02583	297	cinnamoyl-CoA reductase	98.13
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.13
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.13
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.13
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.13
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.11
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.1
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.06
PLN02260	668	probable rhamnose biosynthetic enzyme	98.06
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.05
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.04
PRK07201	657	short chain dehydrogenase; Provisional	98.02
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.01
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.99
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.99
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.98
PRK06194	287	hypothetical protein; Provisional	97.98
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.98
PLN02240	352	UDP-glucose 4-epimerase	97.97
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.97
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.95
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.95
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.94
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.93
PLN02653	340	GDP-mannose 4,6-dehydratase	97.93
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.92
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.92
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.9
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.84
PRK12320	699	hypothetical protein; Provisional	97.81
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.81
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.8
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.78
PRK05865	854	hypothetical protein; Provisional	97.76
PLN02686	367	cinnamoyl-CoA reductase	97.74
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.72
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.71
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.7
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.7
PRK07417	279	arogenate dehydrogenase; Reviewed	97.68
PRK07806	248	short chain dehydrogenase; Provisional	97.68
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.68
PLN02253	280	xanthoxin dehydrogenase	97.67
PRK08267	260	short chain dehydrogenase; Provisional	97.66
PRK08655	437	prephenate dehydrogenase; Provisional	97.65
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.65
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.64
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.63
PLN02688	266	pyrroline-5-carboxylate reductase	97.63
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.63
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.62
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.6
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.59
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.59
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.58
PRK07680	273	late competence protein ComER; Validated	97.57
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.57
PRK12367	245	short chain dehydrogenase; Provisional	97.57
PRK06182	273	short chain dehydrogenase; Validated	97.56
COG2910	211	Putative NADH-flavin reductase [General function p	97.56
PRK12828	239	short chain dehydrogenase; Provisional	97.55
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.55
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.54
PRK07326	237	short chain dehydrogenase; Provisional	97.54
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.54
PRK06545	359	prephenate dehydrogenase; Validated	97.53
PRK07102	243	short chain dehydrogenase; Provisional	97.53
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.53
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.51
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.51
PRK06180	277	short chain dehydrogenase; Provisional	97.51
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.51
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.5
PRK12829	264	short chain dehydrogenase; Provisional	97.5
PLN02996	491	fatty acyl-CoA reductase	97.5
PRK05717	255	oxidoreductase; Validated	97.49
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.49
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.48
PRK05875	276	short chain dehydrogenase; Provisional	97.48
PRK06914	280	short chain dehydrogenase; Provisional	97.47
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.47
PLN00016	378	RNA-binding protein; Provisional	97.46
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.46
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.46
PRK12480	330	D-lactate dehydrogenase; Provisional	97.45
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.45
PRK08643	256	acetoin reductase; Validated	97.45
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.44
PRK14982	340	acyl-ACP reductase; Provisional	97.44
PRK07814	263	short chain dehydrogenase; Provisional	97.44
PRK07774	250	short chain dehydrogenase; Provisional	97.43
PRK12939	250	short chain dehydrogenase; Provisional	97.43
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.43
PLN02260	668	probable rhamnose biosynthetic enzyme	97.42
PRK07069	251	short chain dehydrogenase; Validated	97.4
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.39
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.39
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.39
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.39
PRK06179	270	short chain dehydrogenase; Provisional	97.38
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.37
PLN02256	304	arogenate dehydrogenase	97.36
PRK07890	258	short chain dehydrogenase; Provisional	97.36
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.36
PRK06197	306	short chain dehydrogenase; Provisional	97.35
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.34
PRK07067	257	sorbitol dehydrogenase; Provisional	97.34
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.33
PRK08278	273	short chain dehydrogenase; Provisional	97.32
PRK08219	227	short chain dehydrogenase; Provisional	97.32
PRK10538	248	malonic semialdehyde reductase; Provisional	97.32
PRK08818	370	prephenate dehydrogenase; Provisional	97.31
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.3
PRK06924	251	short chain dehydrogenase; Provisional	97.3
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.29
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.29
PRK08251	248	short chain dehydrogenase; Provisional	97.28
PRK05854	313	short chain dehydrogenase; Provisional	97.28
PRK05866	293	short chain dehydrogenase; Provisional	97.27
PRK09135	249	pteridine reductase; Provisional	97.27
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.26
PRK06482	276	short chain dehydrogenase; Provisional	97.26
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.26
PRK06057	255	short chain dehydrogenase; Provisional	97.25
PRK12827	249	short chain dehydrogenase; Provisional	97.25
PRK06138	252	short chain dehydrogenase; Provisional	97.24
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.24
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
PRK05993	277	short chain dehydrogenase; Provisional	97.24
PRK06172	253	short chain dehydrogenase; Provisional	97.23
PRK07063	260	short chain dehydrogenase; Provisional	97.23
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.23
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	97.23
PRK07856	252	short chain dehydrogenase; Provisional	97.23
PRK06181	263	short chain dehydrogenase; Provisional	97.22
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.22
PRK06841	255	short chain dehydrogenase; Provisional	97.22
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.21
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.21
PRK12742	237	oxidoreductase; Provisional	97.2
PRK05884	223	short chain dehydrogenase; Provisional	97.2
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.2
PRK05650	270	short chain dehydrogenase; Provisional	97.2
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.19
PRK12746	254	short chain dehydrogenase; Provisional	97.19
PRK06198	260	short chain dehydrogenase; Provisional	97.19
PLN02780	320	ketoreductase/ oxidoreductase	97.18
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.18
PRK07577	234	short chain dehydrogenase; Provisional	97.18
PRK05876	275	short chain dehydrogenase; Provisional	97.18
PRK13243	333	glyoxylate reductase; Reviewed	97.18
PRK08605	332	D-lactate dehydrogenase; Validated	97.18
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.18
PRK12937	245	short chain dehydrogenase; Provisional	97.17
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.17
PRK09291	257	short chain dehydrogenase; Provisional	97.16
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.16
PRK06398	258	aldose dehydrogenase; Validated	97.16
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.16
PRK09186	256	flagellin modification protein A; Provisional	97.16
PRK08507	275	prephenate dehydrogenase; Validated	97.16
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.15
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.15
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.14
PRK08263	275	short chain dehydrogenase; Provisional	97.13
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.12
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.12
PRK07024	257	short chain dehydrogenase; Provisional	97.12
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.11
PRK07060	245	short chain dehydrogenase; Provisional	97.11
PRK07576	264	short chain dehydrogenase; Provisional	97.11
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.11
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.09
PRK09242	257	tropinone reductase; Provisional	97.09
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.08
PRK06128	300	oxidoreductase; Provisional	97.08
PRK06101	240	short chain dehydrogenase; Provisional	97.07
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.07
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.07
PRK08265	261	short chain dehydrogenase; Provisional	97.07
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.06
PRK12744	257	short chain dehydrogenase; Provisional	97.05
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.05
PRK06196	315	oxidoreductase; Provisional	97.05
PRK08226	263	short chain dehydrogenase; Provisional	97.05
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.05
PLN02712	667	arogenate dehydrogenase	97.04
PRK07454	241	short chain dehydrogenase; Provisional	97.04
PRK06701	290	short chain dehydrogenase; Provisional	97.04
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.04
PRK05693	274	short chain dehydrogenase; Provisional	97.04
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.03
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.03
PRK06500	249	short chain dehydrogenase; Provisional	97.03
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.02
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.02
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.02
PRK09072	263	short chain dehydrogenase; Provisional	97.02
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.02
PRK07904	253	short chain dehydrogenase; Provisional	97.02
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.01
PRK07023	243	short chain dehydrogenase; Provisional	97.01
PRK07832	272	short chain dehydrogenase; Provisional	97.0
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	97.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.0
PRK07074	257	short chain dehydrogenase; Provisional	97.0
PLN02503	605	fatty acyl-CoA reductase 2	97.0
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.99
PRK07574	385	formate dehydrogenase; Provisional	96.98
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.98
PRK07062	265	short chain dehydrogenase; Provisional	96.98
PRK06523	260	short chain dehydrogenase; Provisional	96.96
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.96
PRK07478	254	short chain dehydrogenase; Provisional	96.96
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.94
PRK07825	273	short chain dehydrogenase; Provisional	96.94
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.94
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.93
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.93
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.93
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.92
PRK12747	252	short chain dehydrogenase; Provisional	96.92
PRK08264	238	short chain dehydrogenase; Validated	96.92
PRK05867	253	short chain dehydrogenase; Provisional	96.91
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.89
PRK05855	582	short chain dehydrogenase; Validated	96.89
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.89
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.89
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.88
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.88
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.87
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.87
PRK07831	262	short chain dehydrogenase; Provisional	96.87
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.86
PRK06949	258	short chain dehydrogenase; Provisional	96.86
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.85
PRK07677	252	short chain dehydrogenase; Provisional	96.85
PRK07985	294	oxidoreductase; Provisional	96.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.85
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.83
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.83
PRK07035	252	short chain dehydrogenase; Provisional	96.83
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.83
PRK08339	263	short chain dehydrogenase; Provisional	96.82
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.82
PLN03139	386	formate dehydrogenase; Provisional	96.82
PRK06953	222	short chain dehydrogenase; Provisional	96.81
PRK08589	272	short chain dehydrogenase; Validated	96.8
PRK09134	258	short chain dehydrogenase; Provisional	96.79
PRK08703	239	short chain dehydrogenase; Provisional	96.78
PRK05872	296	short chain dehydrogenase; Provisional	96.78
PRK08628	258	short chain dehydrogenase; Provisional	96.77
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.77
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.77
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.77
PLN02712	667	arogenate dehydrogenase	96.76
PRK08324	681	short chain dehydrogenase; Validated	96.76
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.76
PRK06139	330	short chain dehydrogenase; Provisional	96.74
PRK08177	225	short chain dehydrogenase; Provisional	96.73
PLN02928	347	oxidoreductase family protein	96.73
PRK12743	256	oxidoreductase; Provisional	96.72
PRK07775	274	short chain dehydrogenase; Provisional	96.72
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.72
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.72
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.71
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.71
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.71
PRK07109	334	short chain dehydrogenase; Provisional	96.69
PRK06114	254	short chain dehydrogenase; Provisional	96.69
PRK07578	199	short chain dehydrogenase; Provisional	96.69
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.68
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.68
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.68
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.67
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.67
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.66
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PRK06940	275	short chain dehydrogenase; Provisional	96.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.63
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.6
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.59
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.59
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.58
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.58
PRK08862	227	short chain dehydrogenase; Provisional	96.57
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.56
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.54
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.54
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.53
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.52
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.51
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.49
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.48
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.48
PRK07201	657	short chain dehydrogenase; Provisional	96.47
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.47
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.47
PLN02383	344	aspartate semialdehyde dehydrogenase	96.46
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.46
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.45
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.43
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.43
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.43
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.4
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.4
PRK06125	259	short chain dehydrogenase; Provisional	96.39
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.38
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.37
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.37
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	96.36
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.36
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.36
PRK13529	563	malate dehydrogenase; Provisional	96.36
PRK06123	248	short chain dehydrogenase; Provisional	96.35
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.34
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.34
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.34
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.33
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.31
PRK08017	256	oxidoreductase; Provisional	96.28
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.28
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.28
PRK06436	303	glycerate dehydrogenase; Provisional	96.27
PRK07340	304	ornithine cyclodeaminase; Validated	96.26
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.24
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.24
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.23
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.2
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.2
PRK08223	287	hypothetical protein; Validated	96.18
PRK06407	301	ornithine cyclodeaminase; Provisional	96.17
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.17
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.15
PRK09496	453	trkA potassium transporter peripheral membrane com	96.14
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.14
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.13
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.13
PLN02306	386	hydroxypyruvate reductase	96.12
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.11
PRK06483	236	dihydromonapterin reductase; Provisional	96.11
PRK06484	520	short chain dehydrogenase; Validated	96.09
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.09
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.09
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.06
PRK08291	330	ectoine utilization protein EutC; Validated	96.05
PRK05599	246	hypothetical protein; Provisional	96.05
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.04
PRK08618	325	ornithine cyclodeaminase; Validated	96.03
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.01
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.99
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.98
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.98
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.97
PRK06932	314	glycerate dehydrogenase; Provisional	95.97
PRK07041	230	short chain dehydrogenase; Provisional	95.96
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.95
PRK07877	722	hypothetical protein; Provisional	95.95
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.94
PRK06141	314	ornithine cyclodeaminase; Validated	95.94
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.93
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.91
PRK06484	520	short chain dehydrogenase; Validated	95.9
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.85
PRK07589	346	ornithine cyclodeaminase; Validated	95.84
PRK06823	315	ornithine cyclodeaminase; Validated	95.79
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.79
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.76
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.75
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	95.75
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.73
PLN02494	477	adenosylhomocysteinase	95.71
PRK06487	317	glycerate dehydrogenase; Provisional	95.7
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.7
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.7
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.69
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	95.68
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.67
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.66
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.64
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.63
PLN02858	1378	fructose-bisphosphate aldolase	95.63
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.62

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=9.1e-57  Score=403.60  Aligned_cols=228  Identities=71%  Similarity=1.080  Sum_probs=207.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+|||++|+||+++|+.|+.+++++|++|+|+++++|+++||+|+..+.+++...+++|++++++|||+||+|||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999999789999999998754455543234566789999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHH
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~  188 (256)
                      +||++|.|++..|.++++++++.|++++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998988777777999999999999999999999999


Q ss_pred             cCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       189 l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +|++|++|+++|||||||++|||+||++.+...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a  228 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMA  228 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHH
Confidence            99999999999999995569999999998854566677899999999999999999877788888764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.7e-55  Score=395.88  Aligned_cols=227  Identities=65%  Similarity=0.997  Sum_probs=204.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~  109 (256)
                      ||+||||+|+||+++|+.|+.+++++|++|+|++++.|+++||+|...+.+++.+.+.++++++++|||+||++||.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999998889999999977443454322233457899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHc
Q 025206          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA  189 (256)
Q Consensus       110 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l  189 (256)
                      +|++|.|++..|.+++++++++|.+++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988777779999999998899999999999999


Q ss_pred             CCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          190 NVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       190 ~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +++|++|+++||||||+++|||+||++++...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia  227 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMA  227 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHH
Confidence            9999999999999998779999999998643466667899999999999999999767778877764

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=5.1e-52  Score=374.77  Aligned_cols=229  Identities=79%  Similarity=1.168  Sum_probs=208.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +.||+||||+|+||+++++.|+.+++++|++|+|++++.++++||.|+.....+..+.+++|++++++|||+||++||.|
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            45999999889999999999999999999999999988899999999887555654445667889999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHH
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAG  187 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~  187 (256)
                      +++|++|.|++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+|+||+|.||++||++++|+
T Consensus        98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~  177 (323)
T PLN00106         98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAE  177 (323)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888888777777799999999999999999999999


Q ss_pred             HcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       188 ~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      ++|+++.+|+++|+|||||++|||+||++.+...++++++++|.++++++|++|+++|.|++++++|.|
T Consensus       178 ~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a  246 (323)
T PLN00106        178 KKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA  246 (323)
T ss_pred             HhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence            999999999999999998889999999998754466677899999999999999999766777877754

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.7e-52  Score=372.99  Aligned_cols=218  Identities=44%  Similarity=0.654  Sum_probs=191.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +||+|||| |+||+++++.|+.+++.+|++|||++  .++|.++||.|+.+..  ..++.. +.+ +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999999 99999999999888887899999999  4799999999987643  344332 234 57899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~  183 (256)
                      |.||+|||+|.|++..|++|+++++++|.+++||++++++|||+|+|||+   +++.+| +|++||||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~---~~k~sg-~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYI---AMKFSG-FPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHH---HHHhcC-CCccceecccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999975554   355555 999999999 8999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-------CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      +||++++++|++|+++|+|||| ++|||+||++++++ +       .+++++++|.++||++|++|+++| |++ ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHG-dt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHG-DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCC-CceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            9999999999999999999996 69999999999863 2       223567899999999999999999 555 77776


Q ss_pred             C
Q 025206          256 A  256 (256)
Q Consensus       256 ~  256 (256)
                      |
T Consensus       231 A  231 (313)
T COG0039         231 A  231 (313)
T ss_pred             H
Confidence            4

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-51  Score=355.52  Aligned_cols=251  Identities=70%  Similarity=1.031  Sum_probs=234.7

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY   84 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~   84 (256)
                      .+++-+.+. ....|.|.....+..||+|+||+|-||+++..+|.++++++++.|||+....|.+.||.|..++..+..|
T Consensus         6 ~~~~~~~~~-~~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~   84 (345)
T KOG1494|consen    6 LIRSSASLS-SGPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGF   84 (345)
T ss_pred             HHHhhhhhc-cCCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceecc
Confidence            344433333 3445668888888899999999999999999999999999999999999889999999999998889999


Q ss_pred             ecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCC
Q 025206           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (256)
Q Consensus        85 ~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~  164 (256)
                      .+...+++++++||+|||-||.||+|||+|.|++..|+.|+++++..+.++||++.+.++|||+++++||+++++++.|.
T Consensus        85 ~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~  164 (345)
T KOG1494|consen   85 TGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGV  164 (345)
T ss_pred             CChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeechHHHHHHHHHHHcCCCC-CceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHh
Q 025206          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE  243 (256)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~  243 (256)
                      |+|+|++|+|.||..|.+.++++.++++| ++++++|+|+|.|.|++|++|+..+...+++++++.++.+++++|.||.+
T Consensus       165 ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~  244 (345)
T KOG1494|consen  165 YDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVK  244 (345)
T ss_pred             CCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEE
Confidence            99999999999999999999999999999 55999999999999999999999986668899999999999999999999


Q ss_pred             hcCCCcceecccC
Q 025206          244 AKAGKGSATLSMA  256 (256)
Q Consensus       244 ~k~~~~s~~~s~~  256 (256)
                      .|.|.||++||||
T Consensus       245 AKaGaGSATLSMA  257 (345)
T KOG1494|consen  245 AKAGAGSATLSMA  257 (345)
T ss_pred             eccCCCchhhhHH
Confidence            9999999999997

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-50  Score=364.36  Aligned_cols=229  Identities=62%  Similarity=0.944  Sum_probs=199.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .++.||+|||++|+||+++++.|+.+++.+|++|+|++++.++++||.|......+...+...+++++++|||+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35669999998899999999999999999999999997788999999997754334433211344689999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  185 (256)
                      .|++++++|.+++..|++++++++++|++++|+++++++|||+|.|+++....+++.+++||+||||++.|||+||+++|
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877765422234455999999999889999999999


Q ss_pred             HHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      |++++++|++|+++||||||++++||+||++  +.+++++++++|.++++++|++|+++|+|+++++++.|
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a  234 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMA  234 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Confidence            9999999999999999999754899999999  55677777999999999999999999987788888764

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.3e-50  Score=345.87  Aligned_cols=212  Identities=26%  Similarity=0.422  Sum_probs=187.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +..||+|+|+ |.||++.|+.++.+++.+|++|+|.+  +++|+.|||+|.... ..-++.. ..| +.+.+++++||+|
T Consensus        19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~-~~D-y~~sa~S~lvIiT   95 (332)
T KOG1495|consen   19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA-SKD-YSVSANSKLVIIT   95 (332)
T ss_pred             cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe-cCc-ccccCCCcEEEEe
Confidence            3569999998 99999999999999999999999998  489999999998742 2222222 335 4678999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      ||..+++|++|++++++|+.+++.+++++.+|.||++++++|||+|+|||+   .|+.+| ||++||||. |+|||+|||
T Consensus        96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv---~wKLSg-fP~nRViGsGcnLDsaRFr  171 (332)
T KOG1495|consen   96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYV---TWKLSG-FPKNRVIGSGCNLDSARFR  171 (332)
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHH---HHHHcC-CcccceeccCcCccHHHHH
Confidence            999999999999999999999999999999999999999999999965443   355555 999999999 899999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC------------CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      ++++++||++|+++++||+||||+ +-||.||.+.+.+            ..+++.|+++.++|.+.+||||+.||
T Consensus       172 yLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKG  246 (332)
T KOG1495|consen  172 YLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKG  246 (332)
T ss_pred             HHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999975 7799999998742            25678899999999999999999995

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.4e-50  Score=362.32  Aligned_cols=208  Identities=28%  Similarity=0.406  Sum_probs=183.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-C--CcEEEEecCCccccccCCCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~--~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ||+|||+ |+||+++|+.|+.+++++|++|+|+++  ++|+++||.|... .  ..++++.+  + +++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~--~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG--D-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC--C-HHHhCCCCEEEECC
Confidence            7999998 999999999999999999999999983  7899999999653 2  24555532  4 57999999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       105 g~~~~~g~~--r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      |.|++||++  |.|++..|++++++++++|.+++|++++|++|||+|+|+++   +++.+| ||++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~---~~k~sg-~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYI---AATEFD-YPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHH---HHHHhC-cChhheecccchHHHHHH
Confidence            999999998  69999999999999999999999999999999999975543   455555 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC---------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL---------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~---------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++||+++|++|++|+++|||||| +++||+||++++++ ++         +++++++|.++++++|++|+++||
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG  226 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHG-SHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKG  226 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCC-CceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999996 59999999999853 21         222478999999999999999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=3e-49  Score=356.37  Aligned_cols=226  Identities=61%  Similarity=0.938  Sum_probs=198.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......++.. ..++++++++|+|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999999865 56677999999874 56778999985322234321 134667899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHH
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la  186 (256)
                      +++++++|.|++..|++++++++++|++++|+++++++|||+|+|++++++.+++.+++|++||||+|.|||+|++++||
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887776666669999999999999999999999


Q ss_pred             HHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       187 ~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +++|++|++|+++||||||++++||+||++ .+.+++++++++|.++++++|++|+++|+|++++++|.|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a  228 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG  228 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHH
Confidence            999999999999999999888999999999 555677777999999999999999999977778888764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=5.9e-49  Score=355.27  Aligned_cols=215  Identities=33%  Similarity=0.434  Sum_probs=186.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~   95 (256)
                      +|.||+||||+|+||+++++.|+.+++++     |++|+|+++    ++|+++||+|+..+  ...++.  . +.+++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--T-DPEEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--c-ChHHHhC
Confidence            67899999988999999999999999999     999999952    79999999998732  223332  2 3368999


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      |||+||++||.|+++|++|.|++..|++++++++++|++++| ++++|++|||+|+||++   +++.+.+||++||||+|
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~k~s~g~p~~rViG~t  155 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALI---ASKNAPDIPPKNFSAMT  155 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEee
Confidence            999999999999999999999999999999999999999998 99999999999975554   45555159999999999


Q ss_pred             echHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhhcC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k~  246 (256)
                      .|||+||+++||+++|++|++|+ .+|||||| ++++|+||++++++ +    ++++.  +++|.++++++|++|+++||
T Consensus       156 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG  234 (323)
T TIGR01759       156 RLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARG  234 (323)
T ss_pred             HHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccC
Confidence            99999999999999999999996 56999997 59999999999853 2    23332  68999999999999999995


Q ss_pred             CC
Q 025206          247 GK  248 (256)
Q Consensus       247 ~~  248 (256)
                      ++
T Consensus       235 ~t  236 (323)
T TIGR01759       235 AS  236 (323)
T ss_pred             Cc
Confidence            43

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=9.6e-49  Score=352.82  Aligned_cols=211  Identities=27%  Similarity=0.389  Sum_probs=184.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .+||+|||+ |+||+++++.|+.+++.+|++|+|+++  +.|+++||+|+.. .....+. .++|+ ++++|||+||++|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence            469999998 999999999999999999999999984  7899999999873 2212332 23454 5799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~  183 (256)
                      |.|+++|++|.|++..|+++++++++.|++++|++++|++|||+|.|    ++++++.+++|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~----t~~~~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIM----TYVAWKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHH----HHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999964    444444445999999999 8999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      ++|+++++++++|+++|||||| +++||+||++++++ +           .+++++++|.++++++|++|+++||
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG-~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg  229 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHG-DSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG  229 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCC-CCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999996 69999999999863 1           1234578999999999999999884

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-48  Score=351.40  Aligned_cols=215  Identities=29%  Similarity=0.407  Sum_probs=187.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC----CchhHHHHHhcccCC--CcEEEEecCCcccccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA----NTPGVAADVGHINTR--SEVAGYMGNDQLGQAL   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~----~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal   94 (256)
                      .+|+||+||||+|+||+++++.|+..++++     |++|+|++    +++|+++||+|+.++  ..+.+.  + +.++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~-~~y~~~   78 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--D-DPNVAF   78 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--c-ChHHHh
Confidence            467899999988999999999999999998     99999995    268999999998732  234432  2 336899


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +|||+||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||++   +++.+|+||++||||+
T Consensus        79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~k~s~g~p~~rViG~  155 (326)
T PRK05442         79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALI---AMKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHH---HHHHcCCCCHHHEEee
Confidence            999999999999999999999999999999999999999988 799999999999976554   4566646999999999


Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEE-EEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhhc
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAK  245 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k  245 (256)
                      |.||++||+++||++++++|++|+++ |||||| +++||+||++++++ +    +++++  +++|.++++++|++|+++|
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  234 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR  234 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence            99999999999999999999999986 599997 59999999999963 2    23322  6799999999999999999


Q ss_pred             CC
Q 025206          246 AG  247 (256)
Q Consensus       246 ~~  247 (256)
                      |.
T Consensus       235 G~  236 (326)
T PRK05442        235 GA  236 (326)
T ss_pred             CC
Confidence            53

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=4.7e-48  Score=352.41  Aligned_cols=210  Identities=26%  Similarity=0.444  Sum_probs=185.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|||+ |.||+++++.|+.+++++|++|+|+++  ++|+++||+|+.. ....++.. +.+ +++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999984  7899999999863 22234332 335 467999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .|+++|++|.|++..|+++++++++.|+++||++++|++|||+|+|+++   +++.+| +|++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~---~~k~sg-~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYV---AWKLSG-FPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHH---HHHHhC-CCHHHEEeecchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999975443   456666 999999999 69999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      ||+++|+++++|+++|||||| +++||+||++++++ +           +++++++++.++++++|++|++.||
T Consensus       191 lA~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG  263 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHG-DSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKG  263 (350)
T ss_pred             HHHHhCCCccceeeeEEecCC-CceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999997 69999999998842 1           3446688999999999999999884

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.4e-47  Score=343.53  Aligned_cols=205  Identities=28%  Similarity=0.431  Sum_probs=179.3

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+...  ..+++..  .+ +++++|||+||++||.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999983  79999999998743  2344432  33 579999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHH
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG  187 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~  187 (256)
                      +||++|.|++..|++++++++++|++++|++++|++|||+|+|+    +++++.+++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t----~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILT----YVAWKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH----HHHHHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999644    34434445999999999 79999999999999


Q ss_pred             HcCCCCCceeEEEEeCCCCCceeecccccccCC-CC----------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       188 ~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~----------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++++|++|+++|||||| +++||+||++++++ ++          +++++++|.++++++|++|++.||
T Consensus       153 ~l~v~~~~V~~~v~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG  221 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHG-DSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKG  221 (299)
T ss_pred             HhCcCcCeEEEEEEecCC-CceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999996 69999999999853 21          123467999999999999999884

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.6e-47  Score=344.90  Aligned_cols=212  Identities=33%  Similarity=0.440  Sum_probs=183.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccCCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aD   98 (256)
                      ||+||||+|+||+++++.|+++++++     +++|+|+++    ++++++||.|+.++  ....+.   .+.+++++|||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCCC
Confidence            89999999999999999999999888     499999975    68899999998532  223332   23468999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld  177 (256)
                      +||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+|+++   +++.+|.+|++||||+|.||
T Consensus        79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~vig~t~LD  155 (323)
T cd00704          79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI---ALKNAPNLPPKNFTALTRLD  155 (323)
T ss_pred             EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEeeHHH
Confidence            99999999999999999999999999999999999996 999999999999975543   45656535999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C--------CCHH-HHHHHHHHHHhhHHHHHhhcC
Q 025206          178 VVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N--------LADE-DIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~--------~~~~-~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      |+|||++||++++++|++|+ ++||||||+ +++|+||++++++ +        ++++ ..++|.++++++|++|+++||
T Consensus       156 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg  234 (323)
T cd00704         156 HNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRG  234 (323)
T ss_pred             HHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccC
Confidence            99999999999999999995 689999975 9999999999853 1        3333 257899999999999999996


Q ss_pred             CC
Q 025206          247 GK  248 (256)
Q Consensus       247 ~~  248 (256)
                      +.
T Consensus       235 ~t  236 (323)
T cd00704         235 AS  236 (323)
T ss_pred             cc
Confidence            44

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=4.8e-47  Score=353.08  Aligned_cols=215  Identities=29%  Similarity=0.335  Sum_probs=185.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC-------CCccEEEEEeCC--CchhHHHHHhcccCC--CcEEEEecCCcccccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIA--NTPGVAADVGHINTR--SEVAGYMGNDQLGQAL   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~-------~~~~eV~LiD~~--~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal   94 (256)
                      .++.||+|||++|+||+++++.|+.+       +++.||+|+|++  +++|+++||+|+.++  ..+.+.  +.+ ++++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~  174 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  174 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            35789999998899999999999998       777799999998  479999999998732  234432  223 6899


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +|||+||++||.|+++|++|.|++..|.+++++++++|++ ++|++++|++|||+|+|+++   +++.+| ++++|+||+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v---~~k~sg-~~~~rViGt  250 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI---CLKNAP-NIPAKNFHA  250 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH---HHHHcC-CCCcceEEe
Confidence            9999999999999999999999999999999999999999 58999999999999975543   455555 899999999


Q ss_pred             -eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 025206          174 -TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA  244 (256)
Q Consensus       174 -t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~  244 (256)
                       |.||++||+++||+++|+++++|+ ++|||||| ++|||+||++++++ +    +++++  +++|.++++++|++|+++
T Consensus       251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~  329 (444)
T PLN00112        251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK  329 (444)
T ss_pred             eccHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence             899999999999999999999995 69999997 59999999999953 2    22222  689999999999999999


Q ss_pred             cCCC
Q 025206          245 KAGK  248 (256)
Q Consensus       245 k~~~  248 (256)
                      ||..
T Consensus       330 kG~t  333 (444)
T PLN00112        330 WGRS  333 (444)
T ss_pred             cCch
Confidence            8643

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1e-46  Score=340.23  Aligned_cols=211  Identities=28%  Similarity=0.450  Sum_probs=186.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .++||+|||+ |.||+++++.|+.+++++||+|+|++  +++|+++||+|+... ..+.+..  .+ +++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEEe
Confidence            3579999998 99999999999999999999999997  378999999998632 2445443  34 4689999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      ||.|++||++|.|++..|+++++++++.+++++|++++|++|||+|+|++   .+++.+| +|++||||+ |.||++|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~---~~~k~sg-~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY---ATWKLSG-FPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH---HHHHHhC-CCHHHEeecCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999997544   3455555 999999999 689999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +.+|+++|++|++|+++|||||| ++++|+||++++++ +          +++++++++.++++++|++|++.||
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG-~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg  230 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHG-DTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKG  230 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCC-CcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999996 59999999999853 1          3446688999999999999999984

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=8e-47  Score=346.88  Aligned_cols=217  Identities=29%  Similarity=0.336  Sum_probs=184.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEE--eCC--CchhHHHHHhcccCC--CcEEEEecCCcccc
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIA--NTPGVAADVGHINTR--SEVAGYMGNDQLGQ   92 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~Li--D~~--~~~g~~~dl~~~~~~--~~v~~~~~t~d~~e   92 (256)
                      +..++.||+||||+|+||+++++.|+.+++++     +++|+  |++  +++|+++||+|+.++  ..+.+.  +.+ ++
T Consensus        40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~  116 (387)
T TIGR01757        40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE  116 (387)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence            34457899999988999999999999999988     56667  555  378999999998732  234432  223 68


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEE
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kvi  171 (256)
                      +++|||+||++||.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|+||++   +++.+| +||+|+|
T Consensus       117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v---~~k~sg-~~~~rvi  192 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALI---AMKNAP-NIPRKNF  192 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHH---HHHHcC-CCcccEE
Confidence            99999999999999999999999999999999999999999987 999999999999975543   455555 8999999


Q ss_pred             EE-eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-CC----CHHH--HHHHHHHHHhhHHHHH
Q 025206          172 GV-TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-NL----ADED--IKALTKRTQDGGTEVV  242 (256)
Q Consensus       172 G~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~~----~~~~--~~~i~~~v~~~~~~i~  242 (256)
                      |+ |.||++||+++||++++++|++|+ ++|||||| ++|||+||++++++ ++    ++.+  +++|.++++++|++|+
T Consensus       193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi  271 (387)
T TIGR01757       193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI  271 (387)
T ss_pred             EecchhHHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence            99 899999999999999999999995 99999997 59999999999853 22    2212  6899999999999999


Q ss_pred             hhcCCC
Q 025206          243 EAKAGK  248 (256)
Q Consensus       243 ~~k~~~  248 (256)
                      +.||.+
T Consensus       272 ~~KG~t  277 (387)
T TIGR01757       272 KKWGRS  277 (387)
T ss_pred             hccCch
Confidence            998643

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.2e-46  Score=340.40  Aligned_cols=214  Identities=28%  Similarity=0.380  Sum_probs=186.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC--C--chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~   95 (256)
                      +|+||+||||+|+||+++++.|+.+++++     ||+|+|++  .  ++|+++||+|+..+  ..+++.  + +.+++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--D-DPNVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--c-CcHHHhC
Confidence            47899999988999999999999999999     99999995  2  78999999998732  234443  2 3368999


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      |||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||++   +++.+|++|++||||+|
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI---AMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH---HHHHcCCCChHheEEeh
Confidence            99999999999999999999999999999999999999999 599999999999976554   45666569999999999


Q ss_pred             echHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCC-C----CCHH--HHHHHHHHHHhhHHHHHhhcC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~--~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      .||++||++.+|+++|+++.+|++ +|||||| ++++|+||++++++ +    +++.  ++++|.++++++|++|+++||
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG  233 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARG  233 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcC
Confidence            999999999999999999999998 5699996 59999999998853 2    3333  267999999999999999995


Q ss_pred             C
Q 025206          247 G  247 (256)
Q Consensus       247 ~  247 (256)
                      .
T Consensus       234 ~  234 (322)
T cd01338         234 A  234 (322)
T ss_pred             C
Confidence            3

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=7.5e-46  Score=333.77  Aligned_cols=209  Identities=30%  Similarity=0.431  Sum_probs=181.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +||+|||+ |.||+++++.|+..|+..+|+|+|++.  +++.++||+|....  .......  .+ ++++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEcc
Confidence            38999998 999999999999999878999999983  68889999987632  2233332  23 35789999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~  183 (256)
                      |.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|+|    ++++++.+++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~----~~~~~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI----TYVVQKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH----HHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999964    444444455999999999 7999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +||+++++++++|+++|||||| ++++|+||++++++ +         +.+++++++.++++++|++|+++||
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg-~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg  224 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHG-DSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKG  224 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCC-CceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999996 59999999999853 2         2345688999999999999999884

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.3e-45  Score=328.92  Aligned_cols=221  Identities=35%  Similarity=0.596  Sum_probs=188.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      .+.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.+.++|+.|.....  ..++. .++|+ ++++|||+||
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence            35679999998 9999999999999997 6899999984  678899999875321  23332 24565 4899999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHH
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R  180 (256)
                      +++|.++++|++|.|++..|.++++++++.|+++||++++|++|||+|.+    ++++++.+++|++||+|+| .||++|
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~----t~~~~~~s~~p~~rviG~gt~lds~R  154 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCM----VKVFQEKSGIPSNKICGMAGVLDSSR  154 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH----HHHHHHhhCCCcccEEEecchHHHHH
Confidence            99999999999999999999999999999999999999999999999964    3444444559999999996 899999


Q ss_pred             HHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCCCcc
Q 025206          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s  250 (256)
                      ++++||++++++|++|+++|+|||| ++++|+||++++++ +         +++++++++.++++++|++|++++ |+++
T Consensus       155 ~~~~la~~l~v~~~~v~~~viGeHg-~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~  232 (319)
T PTZ00117        155 FRCNLAEKLGVSPGDVSAVVIGGHG-DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS  232 (319)
T ss_pred             HHHHHHHHhCCCcccceEEEeecCC-CcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence            9999999999999999999999996 69999999998853 1         456668899999999999999986 5666


Q ss_pred             eecccC
Q 025206          251 ATLSMA  256 (256)
Q Consensus       251 ~~~s~~  256 (256)
                      +++|+|
T Consensus       233 t~~~~a  238 (319)
T PTZ00117        233 AFFAPA  238 (319)
T ss_pred             hHHHHH
Confidence            766654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.6e-45  Score=328.99  Aligned_cols=215  Identities=34%  Similarity=0.611  Sum_probs=184.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC----CcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~----~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+|||+ |.||+.+|+.++.+|+. +|+|+|+++  ..+.++|+.|....    .+++   .++|++ ++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~-~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYA-DTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHH-HhCCCCEEEE
Confidence            69999998 99999999999999987 899999984  46778888876531    2333   245654 5899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~  181 (256)
                      ++|.|+++|++|.|++..|++++++++++|.+++|++++|++|||+|.|+++   +++.+| +|++||||+| .|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~---~~~~sg-~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYV---AWQKSG-FPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHHC-cCHHHEEEeccchHHHHH
Confidence            9999999999999999999999999999999999999999999999964433   355555 9999999995 8999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      ++.||+++++++++|+++|||||| ++++|+||++++++ +    ++++++++|.++++++|++|+++| |++++++++
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg-~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~  228 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHG-DAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAP  228 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCC-CcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHH
Confidence            999999999999999999999996 59999999999863 2    345568999999999999999987 455666654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=3.5e-45  Score=328.56  Aligned_cols=208  Identities=31%  Similarity=0.484  Sum_probs=181.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |+|||+ |+||+++++.|+.+++++||+|+|+++  +.+.++||+|.... ...++.. +++ +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            589998 999999999999999999999999984  78999999998754 2233332 334 46999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHH
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA  186 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la  186 (256)
                      +++|++|.|++.+|++++++++++|+++||++++|++|||+|+|++   .+++.+| +|++||||+ |.|||+|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~---~~~~~sg-~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTY---VAQKLSG-LPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHH---HHHHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999996443   2345555 999999999 6999999999999


Q ss_pred             HHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       187 ~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++++++++|+++|+|||| +++||+||++++++ ++      +++++++|.++++++|++|++.||
T Consensus       154 ~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg  219 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHG-DSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKG  219 (300)
T ss_pred             HHhCCCcccEEEEEEeccC-CceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999996 58999999999853 22      335578999999999999999985

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-44  Score=326.90  Aligned_cols=222  Identities=35%  Similarity=0.622  Sum_probs=188.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +.+.+||+|||| |.||+++++.++..++ .+|+|+|+++  +.+.++|+.|...  ....++. .++|+ ++++|||+|
T Consensus         3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiV   78 (321)
T PTZ00082          3 MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEE
Confidence            456679999998 9999999999999997 4699999984  5778999998642  2223333 24565 689999999


Q ss_pred             EEecCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-
Q 025206          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-  174 (256)
Q Consensus       101 Ii~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-  174 (256)
                      |+++|.|+++|+     +|.+++..|++++++++++|+++||++++|++|||+|+++    +++++.+++|++||||+| 
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t----~~~~~~sg~p~~rviGlgt  154 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAG  154 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH----HHHHHhcCCChhhEEEecC
Confidence            999999999999     9999999999999999999999999999999999999643    343344459999999996 


Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhh
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEA  244 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~  244 (256)
                      .||++|+++.||+++++++++|+++|+|||| +++||+||++++++ +         ++++++++|.++++++|++|+++
T Consensus       155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~  233 (321)
T PTZ00082        155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHG-DKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL  233 (321)
T ss_pred             cccHHHHHHHHHHHhCCCcccceeeEEecCC-CceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999996 69999999999853 1         45566889999999999999998


Q ss_pred             cCCCcceecccC
Q 025206          245 KAGKGSATLSMA  256 (256)
Q Consensus       245 k~~~~s~~~s~~  256 (256)
                      | |+++++++.|
T Consensus       234 ~-gkg~t~~~ia  244 (321)
T PTZ00082        234 L-GTGSAYFAPA  244 (321)
T ss_pred             c-CCCccHHHHH
Confidence            7 5667777653

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.9e-45  Score=331.67  Aligned_cols=218  Identities=29%  Similarity=0.358  Sum_probs=182.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC--C--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~--~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ||+||||+|+||+++++.|+.+++++     +++|+|++  .  ++++++||.|+........ ..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEE
Confidence            69999999999999999999988875     79999995  2  6899999999874321111 1233446899999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechH
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds  178 (256)
                      |++||.|++++++|.+++..|++++++++++|++++ |++++|++|||+|+||++   +++.+| ++|+++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v---~~~~sg-~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALV---LSNYAP-SIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH---HHHHcC-CCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 999999999999975543   456665 666679999 89999


Q ss_pred             HHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccC-C----CC----CHHH--HHHHHHHHHhhHHHHHhhcC
Q 025206          179 VRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----NL----ADED--IKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~-~----~~----~~~~--~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +||+++||++++++|++|+ ++||||||+ ++||+||+++++ +    ++    ++++  +++|.++++++|++|+++|+
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~  234 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARK  234 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccC
Confidence            9999999999999999996 699999975 999999999997 4    32    2222  57899999999999999876


Q ss_pred             CCcceeccc
Q 025206          247 GKGSATLSM  255 (256)
Q Consensus       247 ~~~s~~~s~  255 (256)
                      |+  +.+++
T Consensus       235 ~~--t~~~i  241 (324)
T TIGR01758       235 LS--SALSA  241 (324)
T ss_pred             CC--HHHHH
Confidence            44  44443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=2.6e-44  Score=325.84  Aligned_cols=218  Identities=30%  Similarity=0.398  Sum_probs=183.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~   95 (256)
                      +|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    +.++++|+.|+..+  ..+..   +.+++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46799999999999999999999988775     999999952    57888999997532  23332   346678999


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-  173 (256)
                      |||+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+|+++   +++.++++|+++ ||+ 
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~~~~~~~~~-ig~g  153 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI---LLKYAPSIPKEN-FTAL  153 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH---HHHHcCCCCHHH-EEee
Confidence            99999999999999999999999999999999999999997 899999999999975543   455556688888 888 


Q ss_pred             eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccC----C-CC----CHH--HHHHHHHHHHhhHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-NL----ADE--DIKALTKRTQDGGTEV  241 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~----~-~~----~~~--~~~~i~~~v~~~~~~i  241 (256)
                      |.||++||+++||++++++|++|+. +||||||+ ++||+||+++++    + ++    +++  .+++|.++++++|++|
T Consensus       154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I  232 (325)
T cd01336         154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV  232 (325)
T ss_pred             ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence            8999999999999999999999975 59999975 999999999986    3 22    222  2589999999999999


Q ss_pred             HhhcCCCcceecc
Q 025206          242 VEAKAGKGSATLS  254 (256)
Q Consensus       242 ~~~k~~~~s~~~s  254 (256)
                      +++|+|.  ++++
T Consensus       233 i~~~~g~--t~~~  243 (325)
T cd01336         233 IKARKLS--SAMS  243 (325)
T ss_pred             HHccccc--hHHH
Confidence            9986444  4444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.4e-43  Score=319.15  Aligned_cols=209  Identities=30%  Similarity=0.461  Sum_probs=183.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.||+++++.|+.+|+..+|+|+|++.  +.+.++|+.|.... .....+  +++ ++++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d-~~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGD-YADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCC-HHHhCCCCEEEEccC
Confidence            59999998 999999999999999888999999984  67899999987532 223333  235 468999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .+++++++|.+++..|+++++++++.|++++|+++++++|||+|+|+++   +++.+| +|++||||+ |.||++|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~---~~~~sg-~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYV---AYKLSG-LPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHHC-cCHHHeecccchhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999975543   445555 999999999 79999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCC------------CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      ||+++++++++|+++|+|||| ++++|+||++++++            .++++++++|.++++++|++|+++||
T Consensus       153 la~~~~v~~~~v~~~viGeHg-~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg  225 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHG-DSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKG  225 (308)
T ss_pred             HHHHhCCCccceeceeeccCC-CcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999996 69999999999853            13345688999999999999999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.8e-42  Score=312.02  Aligned_cols=213  Identities=30%  Similarity=0.525  Sum_probs=184.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC----CchhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----NTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~----~~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+|+||+|+||++++..|+..|+.++|+|+|++    ++++..+|+.|...  +...++.. +.+ ++++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d-~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSD-LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCC-HHHhCCCCEEEE
Confidence            69999998899999999999999998899999985    36788899998643  21223322 345 467999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++++   .+++.+| +|++|+||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~---~~~~~~g-~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTY---KALKESG-FDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHhcC-CCHHHEeeccchHHHHHH
Confidence            999999999999999999999999999999999999999999999997543   3456666 999999999 68999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C------CCHHHHHHHHHHHHhhHHHHHhhcCCC
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~------~~~~~~~~i~~~v~~~~~~i~~~k~~~  248 (256)
                      +++||+++++++++|+++|+|||| +++||+||++++++ +      ++++++++|.++++++|++|++.||+.
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg-~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t  227 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHG-DSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS  227 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCC-CceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999996 59999999999853 2      124557899999999999999999764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1.6e-42  Score=312.01  Aligned_cols=217  Identities=37%  Similarity=0.652  Sum_probs=183.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ++||+|||+ |+||+++++.++..++. ||+|+|+++  +++..+|+.|....  ...++. .++++ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            479999998 99999999999999987 999999984  67888898876432  122332 24464 679999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~~  182 (256)
                      +|.|+++|++|.+++.+|++++++++++|++++|++++|++|||+|+|+++   +++.+ ++|++||||+| .||++||+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~---~~~~s-~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYV---ALKES-GFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHh-CCCcccEEEeCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999975443   34444 59999999995 89999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceecc
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s  254 (256)
                      ++||++++++|++|+++|+|||| ++++|+||++++++ +    ++++++++|.+.+++.+++|++.+ ++++++++
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg-~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~  228 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHG-DSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYA  228 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCC-CcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHH
Confidence            99999999999999999999996 59999999998852 2    456668999999999999999973 23334443

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=8.2e-42  Score=306.70  Aligned_cols=215  Identities=36%  Similarity=0.601  Sum_probs=182.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |+|||| |.||+.+++.++.+++. +|+|+|+++  +++..+|+.|....  ...++.. ++| +++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d-~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TND-YEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCC-HHHhCCCCEEEEecCC
Confidence            689998 99999999999999987 999999984  56777888876421  1233322 345 4679999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHHHHHH
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFY  185 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~~~~l  185 (256)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|.+++   .+++.+ ++||+||||+| .||++|++++|
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~---~~~~~s-~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTY---VAYKAS-GFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH---HHHHHh-CCCHHHEEEecchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999996433   234444 49999999996 89999999999


Q ss_pred             HHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      |+++++++++|+++|+|||| ++++|+||++++++ +    ++++++++|.+++++.|++|++.| |+++++++.
T Consensus       153 a~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~  225 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHG-DTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAP  225 (300)
T ss_pred             HHHhCCCccceEEEEEeCCC-CcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHH
Confidence            99999999999999999996 58999999999853 2    345568999999999999999988 455666654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=8e-42  Score=318.12  Aligned_cols=220  Identities=19%  Similarity=0.180  Sum_probs=182.6

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCC----CchhHHHHHhcccCC--CcEEEEecCCcccc
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA----NTPGVAADVGHINTR--SEVAGYMGNDQLGQ   92 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~----~~~g~~~dl~~~~~~--~~v~~~~~t~d~~e   92 (256)
                      ++.+|.+|+|+||+|++|+++.+.++...+++     .|+|+|++    .++|+++||+|+.++  ..+.+..   +.++
T Consensus       119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~~e  195 (452)
T cd05295         119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DLDV  195 (452)
T ss_pred             cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CCHH
Confidence            34467899999999999999999999866543     69999994    378999999998743  2344432   3468


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p--~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      +++|||+||+++|.|+++|++|.|++..|.+++++++++|.+++|  ++++|++|||+|+|+++   +++.++++|++||
T Consensus       196 a~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i---~~k~apgiP~~rV  272 (452)
T cd05295         196 AFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI---LIKYAPSIPRKNI  272 (452)
T ss_pred             HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHE
Confidence            999999999999999999999999999999999999999999998  89999999999986544   4566646999999


Q ss_pred             EEEeechHHHHHHHHHHHcCCCCCce-eEEEEeCCCCCceeecccccccCC-------------C----CCHHH--HHHH
Q 025206          171 FGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----LADED--IKAL  230 (256)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v-~~~v~G~Hg~~~~vp~~s~~~~~~-------------~----~~~~~--~~~i  230 (256)
                      ||++.||++|++++||+++|+++++| +++|||||| +++||+||++++++             +    +.+++  .+++
T Consensus       273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~  351 (452)
T cd05295         273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF  351 (452)
T ss_pred             EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence            99988999999999999999999999 479999997 59999999999843             2    12222  3678


Q ss_pred             HHHHHhhHHHHHhhcCCCcceecccC
Q 025206          231 TKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       231 ~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      .+.++++++   ++|   +|+++|.|
T Consensus       352 ~~~v~~rg~---~rk---gsT~~siA  371 (452)
T cd05295         352 VATLKSLSS---SLN---HEAAISPA  371 (452)
T ss_pred             HHHHHHHHH---hcc---CChHHHHH
Confidence            889999998   444   35666643

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1.8e-40  Score=298.04  Aligned_cols=191  Identities=28%  Similarity=0.365  Sum_probs=161.0

Q ss_pred             EEEEEeCCC----chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q 025206           56 RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC  129 (256)
Q Consensus        56 eV~LiD~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~  129 (256)
                      .++|+|+++    ++|+++||.|+..+  ..++.   +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999973    68999999998732  23331   2354689999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHHHcCCCCCce-eEEEEeCCCC
Q 025206          130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG  206 (256)
Q Consensus       130 ~~i~~~-~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~Hg~  206 (256)
                      ++|.++ +|++++|++|||+|+||++   +++.+| +|++|+||+ |.|||+||+++||++++++|++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~---~~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALI---LKEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHH---HHHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 8999999999999975543   455566 999999999 79999999999999999999999 6999999975


Q ss_pred             Cceeeccccccc----CC-CC----CHHH--HHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          207 ITILPLFSQATP----KA-NL----ADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       207 ~~~vp~~s~~~~----~~-~~----~~~~--~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                       ++||+||++++    ++ ++    .+++  .++|.++++++|++|+++|+|  ++++|+|
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg--~t~~~ia  225 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKL--SSALSAA  225 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCc--cHHHHHH
Confidence             99999999999    43 22    2333  678999999999999998533  4566543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.2e-38  Score=281.28  Aligned_cols=181  Identities=37%  Similarity=0.578  Sum_probs=159.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC--CccEEEEEeCCC--chhHHHHHhcccCCC-cEEEEecCCccccccCCCCEEEEecC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~--~~~eV~LiD~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+||||+|.+|+++++.|++.+  ...||+|+|+++  +++..+|++|..... ..++.. ++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCchHHHhCCCCEEEECCC
Confidence            6899988999999999999999  677999999983  788899999876432 234333 5677899999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  185 (256)
                      .++++|++|.+++.+|++++++++++|+++||++|+|++|||+|.|+++   +++.+ ++|++|+||+|.+|++|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~---~~~~s-g~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYL---VWRYS-GLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH---HHHHh-CCCchhEEEeecchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999964432   34444 4999999999669999999999


Q ss_pred             HHHcCCCCCceeEEEEeCCCCCceeecccccc
Q 025206          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQAT  217 (256)
Q Consensus       186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~  217 (256)
                      |+++++++++|+++|||+||+ +++|+||+++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~  186 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR  186 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch
Confidence            999999999999999999975 7999999876

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1.1e-38  Score=287.01  Aligned_cols=185  Identities=24%  Similarity=0.293  Sum_probs=156.3

Q ss_pred             EEEEEeCCC----chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 025206           56 RLALYDIAN----TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS  130 (256)
Q Consensus        56 eV~LiD~~~----~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~  130 (256)
                      .++|+|+++    ++|+++||.|+.++ ......  +.+++++++|||+||++||.|+++|++|.|++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            799999974    68999999998832 222222  34666799999999999999999999999999999999999999


Q ss_pred             HHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCC
Q 025206          131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGI  207 (256)
Q Consensus       131 ~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~  207 (256)
                      +|++++| ++++|++|||+|+||++   ++++.+++|++ +||+ |.|||+||+++||++++++|++|+. +|||||| +
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v---~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG-~  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLV---AMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHA-E  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHH---HHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCC-C
Confidence            9999995 58899999999975543   22455559998 9999 8999999999999999999999975 5999997 5


Q ss_pred             ceeeccccccc--CC-C------CCHH-HHHHHHHHHHhhHHHHHhhcCC
Q 025206          208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAG  247 (256)
Q Consensus       208 ~~vp~~s~~~~--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~~  247 (256)
                      ++||+||++++  ++ +      ++++ .+++|.++++++|++|+++||.
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~  219 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGF  219 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCcCC
Confidence            99999999999  53 2      2332 3689999999999999999863

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.7e-33  Score=225.32  Aligned_cols=139  Identities=42%  Similarity=0.644  Sum_probs=120.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+||||+|.||+++++.|+++++++||+|+|++  +++|+++||+|............. +.+++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEeccc
Confidence            69999999999999999999999999999999999  479999999998754433222222 446899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |+++|++|.+++..|++++++++++|.+++|+++++++|||+|+    +++++++.+++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~----~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV----MTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH----HHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH----HHHHHHHhhCcCcccCcC
Confidence            99999999999999999999999999999999999999999995    445555555599999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.4e-33  Score=236.11  Aligned_cols=224  Identities=32%  Similarity=0.403  Sum_probs=191.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~   96 (256)
                      .++.+|.|.||+|++|+++.+.++....+     -.++|+|+.+    ++|..|+|+|+.++. ++....++|..++++|
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~Pl-L~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPL-LKGVVATTDEVEAFKD   80 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhH-HHhhhcccChhhhhcc
Confidence            35779999999999999999998754222     1789999984    689999999998764 2222336677899999


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      .|+.|...+.||++|++|.|++..|.+|++.-..++++|+ |++.++++.||.+.+..|+   .++..++|.+++-.+|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999999 8999999999999988664   45567799999999999


Q ss_pred             chHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC---C------C-CHHHH-HHHHHHHHhhHHHHHh
Q 025206          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA---N------L-ADEDI-KALTKRTQDGGTEVVE  243 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~---~------~-~~~~~-~~i~~~v~~~~~~i~~  243 (256)
                      ||.+|+..+||.++|++.++|. +.+||||+ +||+|++-++++..   .      + ++.++ .++.+.|+++|..||+
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~  236 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK  236 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence            9999999999999999999996 89999997 59999999999841   1      2 33444 5899999999999999


Q ss_pred             hcCCCcceecccC
Q 025206          244 AKAGKGSATLSMA  256 (256)
Q Consensus       244 ~k~~~~s~~~s~~  256 (256)
                      .+  +-|+++|.|
T Consensus       237 ar--k~SSA~SaA  247 (332)
T KOG1496|consen  237 AR--KLSSAMSAA  247 (332)
T ss_pred             hh--hhhhhhhHH
Confidence            87  446788865

>PRK15076 alpha-galactosidase; Provisional

Probab=99.94  E-value=1.3e-26  Score=217.14  Aligned_cols=174  Identities=20%  Similarity=0.255  Sum_probs=135.5

Q ss_pred             CceEEEEcCCCCcHHHHHH--HHH-cCCCc-cEEEEEeCCC--ch-hHHHHHhccc--CCCcEEEEecCCccccccCCCC
Q 025206           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIAN--TP-GVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~--~l~-~~~~~-~eV~LiD~~~--~~-g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      ++||+|||| |.+|++.++  .++ ..++. .||+|+|+++  ++ +..+ +.+..  .....++. .++|++++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            369999998 999998877  555 34554 3999999984  32 2222 33321  11223433 2668889999999


Q ss_pred             EEEEecCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHH
Q 025206           99 VVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (256)
Q Consensus        99 vVIi~ag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~  155 (256)
                      +||++++.+ .+++              ++|.|.        ..+|+++++++++.|+++||++|+|++|||+|.    +
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~di----v  153 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAM----N  153 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHH----H
Confidence            999999887 3444              445566        899999999999999999999999999999994    5


Q ss_pred             HHHHHHhCCCCCCcEEEEe--echHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          156 AEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       156 ~~~~~~~~~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      +++++  + +|+.||||+|  .+|+.   +.+|+.+|+++++|++++.| ||     +.|+..+...
T Consensus       154 t~~~~--~-~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH-----~~W~~~~~~~  209 (431)
T PRK15076        154 TWAMN--R-YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH-----MAWYLELERK  209 (431)
T ss_pred             HHHHh--c-CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc-----hhhheeeeEC
Confidence            56655  3 8889999997  47764   78999999999999999999 99     7798888863

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.94  E-value=9.4e-26  Score=210.88  Aligned_cols=175  Identities=21%  Similarity=0.205  Sum_probs=131.5

Q ss_pred             ceEEEEcCCCCcHHH--HHHHHHcCC--C-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQP--LALLMKLNP--L-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~--la~~l~~~~--~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      +||+|||| |+. .+  +...|+...  + .+||+|+|+++  +   ...+..+.+.. ...+++.. |+|+++|++|||
T Consensus         1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gAD   76 (425)
T cd05197           1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDAD   76 (425)
T ss_pred             CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence            69999999 754 22  233444433  3 57999999994  2   12233333222 12344433 779999999999


Q ss_pred             EEEEecCCCC------------CCC---C-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206           99 VVIIPAGVPR------------KPG---M-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        99 vVIi~ag~~~------------~~g---~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      |||.+.....            +.|   +     -......+|+++++++++.|+++||++|+|++|||+|.    ++++
T Consensus        77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di----~t~a  152 (425)
T cd05197          77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGE----VTEA  152 (425)
T ss_pred             EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHH----HHHH
Confidence            9999864321            221   1     12344678999999999999999999999999999994    5566


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      .++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| |||     ||||.++++
T Consensus       153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~  206 (425)
T cd05197         153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN  206 (425)
T ss_pred             HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence            6555  478999999977 8999999999999999999999999 994     899999985

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.93  E-value=3.7e-25  Score=206.57  Aligned_cols=175  Identities=19%  Similarity=0.251  Sum_probs=133.2

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHcC-C-C-ccEEEEEeCC-Cch-----hHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQP-LALLMKLN-P-L-VSRLALYDIA-NTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~-la~~l~~~-~-~-~~eV~LiD~~-~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      |||+|||| |++-.. +...|+.. . + .+||+|+|++ +.+     ..+.++.+.. ...+++.. |+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence            69999999 765332 33344442 2 3 5799999999 421     1122222221 12344433 679999999999


Q ss_pred             EEEEecCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206           99 VVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      +||++++.++.++.++.+                    ...+|+++++++++.|+++||++|+|++|||+|    +++++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            999999877666554444                    367899999999999999999999999999999    55666


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      +++.+   +.||||+|+.+ .|+++.+|+.+|+++++|+++|+| ||     +.|+..++..
T Consensus       154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH-----~~w~~~~~~~  206 (419)
T cd05296         154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNH-----LGWLRRVLLD  206 (419)
T ss_pred             HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEeccc-----ceeeeeeeEC
Confidence            66653   78999999875 799999999999999999999999 99     6788877763

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.90  E-value=4.1e-23  Score=193.56  Aligned_cols=176  Identities=20%  Similarity=0.170  Sum_probs=134.9

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHHcC-CCc-cEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCCEE
Q 025206           29 RKVAVLGAAGGIGQPLAL--LMKLN-PLV-SRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~--~l~~~-~~~-~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++  ++....++.+..  .....++. .++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            58999998 999998776  34432 332 3999999984  444444444321  11123332 266888999999999


Q ss_pred             EEecCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206          101 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus       101 Ii~ag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      |++++.+..++.++                      .....+|.+++.++++.+.++||++|++++|||++.    ++++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i----~t~~  154 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAE----LTWA  154 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHH----HHHH
Confidence            99998655544433                      445678999999999999999999999999999994    5566


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      +++..  + .|+||+|+. +.++++.+|+.+++++++|+++++| ||     +.|+..+...
T Consensus       155 ~~k~~--~-~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH-----~~w~~~~~~~  207 (423)
T cd05297         155 LNRYT--P-IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH-----MAWLLKFEYN  207 (423)
T ss_pred             HHHhC--C-CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc-----HhhhhhheEC
Confidence            65553  2 799999966 7799999999999999999999999 99     6788877763

linked to 3D####ucture

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.89  E-value=3.9e-22  Score=186.94  Aligned_cols=190  Identities=18%  Similarity=0.264  Sum_probs=135.3

Q ss_pred             ceEEEEcCCCCcHHH--HHHHHHcC--CC-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQP--LALLMKLN--PL-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~--la~~l~~~--~~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      |||+|||| |++ .+  +...|++.  .+ .+||+|+|++.  +   ...+..+.+.. ...+++.. |+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCC
Confidence            69999999 754 22  33344444  23 57999999994  2   12223332221 22355443 779999999999


Q ss_pred             EEEEecCCC------------CCCC---CC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206           99 VVIIPAGVP------------RKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        99 vVIi~ag~~------------~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      |||.+....            .+.|   ++     -.....+|+++++++++.|+++||++|+|++|||+|.    ++++
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~----vt~~  152 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAI----VAEA  152 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHH----HHHH
Confidence            999986432            1222   11     2345689999999999999999999999999999994    5566


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHHHh
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRTQD  236 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~  236 (256)
                      .++.  +|+.||||+|+... .++..+|+.+|+++++++..+.| ||     +.|+..++...  ..+-+++|.+.+.+
T Consensus       153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH-----~~w~~~~~~~~--G~D~~p~l~e~~~~  221 (437)
T cd05298         153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH-----FGWFTKIYDKQ--GEDLLPKLREHVKE  221 (437)
T ss_pred             HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecc-----hhhhhheEECC--CCchHHHHHHHHhc
Confidence            6555  78899999998764 57888999999999999999999 99     67888777541  22334555554433

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.86  E-value=7.9e-21  Score=175.58  Aligned_cols=191  Identities=23%  Similarity=0.289  Sum_probs=135.8

Q ss_pred             CCceEEEEcCCCCcHHHHHH--HHHcC-CC-ccEEEEEeCCC--ch---hHHHHHhc-ccCCCcEEEEecCCccccccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TP---GVAADVGH-INTRSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~--~l~~~-~~-~~eV~LiD~~~--~~---g~~~dl~~-~~~~~~v~~~~~t~d~~eal~~   96 (256)
                      +..||+|||| |+++.+--.  .|... .+ ..||+|+|++.  ++   ..+..+.+ ...+  +++.. ++|+++|++|
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~kv~~-ttd~~eAl~g   77 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--VKVEA-TTDRREALEG   77 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--eEEEE-ecCHHHHhcC
Confidence            4579999999 987775422  23333 23 56999999983  22   11222222 2223  44443 6799999999


Q ss_pred             CCEEEEecCC------------CCCCC---CC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH
Q 025206           97 SDVVIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (256)
Q Consensus        97 aDvVIi~ag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~  156 (256)
                      ||||+.++..            |.+.|   ++     ....-.++++++.+|++.|+++||+||++++|||+.    ++|
T Consensus        78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vT  153 (442)
T COG1486          78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVT  153 (442)
T ss_pred             CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHH
Confidence            9999998643            22222   11     223456889999999999999999999999999999    678


Q ss_pred             HHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCC-CceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHH
Q 025206          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRT  234 (256)
Q Consensus       157 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v  234 (256)
                      ++.++.  +|.-|+||+|+... -....||+.||+++ +++++.+.| ||     +.||..+...+   .+-++++.+.+
T Consensus       154 eAv~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH-----~~w~~~~~~~G---~d~~p~l~~~~  222 (442)
T COG1486         154 EAVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNH-----MVWILRVRDDG---EDLYPELLEAL  222 (442)
T ss_pred             HHHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechh-----hhhhhHhhhcC---ccchHHHHHHH
Confidence            887776  56449999998653 56788999999975 999999999 99     67888887632   23334555555


Q ss_pred             Hh
Q 025206          235 QD  236 (256)
Q Consensus       235 ~~  236 (256)
                      ++
T Consensus       223 ~~  224 (442)
T COG1486         223 EE  224 (442)
T ss_pred             hc
Confidence            43

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.82  E-value=3.3e-19  Score=148.54  Aligned_cols=152  Identities=23%  Similarity=0.263  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCcHHHHHH--HHHcCC-C-ccEEEEEeCCC--c---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           30 KVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIAN--T---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~--~l~~~~-~-~~eV~LiD~~~--~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ||+|||| |++-.+...  .+...+ + .+||+|+|+++  +   ...+..+.+.. ...+++.. ++|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence            8999999 988776432  333333 3 46999999994  2   12223333222 12344333 67999999999999


Q ss_pred             EEecCC------------CCCCCCC----------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206          101 IIPAGV------------PRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus       101 Ii~ag~------------~~~~g~~----------r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      |++...            |.+.|..          -.....++++.+.++++.|+++|||||+|++|||+.    +++++
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a  153 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA  153 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence            998753            3343311          234567899999999999999999999999999999    56667


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCC
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v  191 (256)
                      +.+.  +|..|++|+|+... -+...+|+.||+
T Consensus       154 ~~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  154 LSRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             HHHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             HHHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence            6655  56689999998754 567888998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.72  E-value=6e-18  Score=140.60  Aligned_cols=80  Identities=38%  Similarity=0.581  Sum_probs=70.8

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~  242 (256)
                      |.||++||+++||+++|++|.+++++||||||+ ++||+||++++++           .++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            579999999999999999999999999999975 8999999999852           2567778999999999999999


Q ss_pred             hhcCCCcceecccC
Q 025206          243 EAKAGKGSATLSMA  256 (256)
Q Consensus       243 ~~k~~~~s~~~s~~  256 (256)
                      ++|+  +++++|+|
T Consensus        80 ~~k~--g~t~~s~A   91 (174)
T PF02866_consen   80 KAKG--GSTSYSIA   91 (174)
T ss_dssp             HHHS--SSCHHHHH
T ss_pred             eecc--ccCcCCHH
Confidence            9996  45777654

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.15  E-value=5.5e-10  Score=100.28  Aligned_cols=162  Identities=23%  Similarity=0.315  Sum_probs=108.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hh--H----HHHHhccc-C-----CCcEEEEecCCcccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--V----AADVGHIN-T-----RSEVAGYMGNDQLGQ   92 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g--~----~~dl~~~~-~-----~~~v~~~~~t~d~~e   92 (256)
                      .+||+|||| |.+|+.+|+.++..|+  +|+++|+++.   ++  .    ...+.... .     ...+.....++++ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999998 9999999999999778  9999999831   11  1    11111111 0     0111112224454 3


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEE
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kvi  171 (256)
                      ++++||+||.++              .+|.++.+++.+++.+++ |++++  .||.+..   ..+++....  ..|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence            899999999984              567899999999999999 68776  9999987   346676655  5788999


Q ss_pred             EE-------------------eechHHHHHHHHHHHcCCCCCcee-EE-EEeCCCCCceeecccccc
Q 025206          172 GV-------------------TTLDVVRAKTFYAGKANVNVAEVN-VP-VVGGHAGITILPLFSQAT  217 (256)
Q Consensus       172 G~-------------------t~lds~R~~~~la~~l~v~~~~v~-~~-v~G~Hg~~~~vp~~s~~~  217 (256)
                      |+                   |.-++...-..+++++|..|--++ ++ .++|+   -..|+|..+.
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NR---il~~~~~eA~  201 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNR---LLAALLNEAI  201 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHh---HHHHHHHHHH
Confidence            98                   223566666778888886551111 22 44454   2356665444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.15  E-value=1.1e-10  Score=97.50  Aligned_cols=117  Identities=23%  Similarity=0.376  Sum_probs=79.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c---hhHHHH-Hh---c-ccC--------CCcEEEEecCCccc
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T---PGVAAD-VG---H-INT--------RSEVAGYMGNDQLG   91 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~---~g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~   91 (256)
                      ||+|+|+ |.+|..+|..++..|+  +|+|+|.+.  +   .....+ +.   + ...        ..+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999998 9999999999999999  999999983  1   111111 11   1 110        124553   45776


Q ss_pred             cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      ++. +||+||.+.              .++.++.+++...+++.+ |++++  +||.+..   -++++....+  .|+|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence            665 999999984              345788999999999999 67765  8998876   3566665543  57889


Q ss_pred             EEEe
Q 025206          171 FGVT  174 (256)
Q Consensus       171 iG~t  174 (256)
                      +|+-
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.03  E-value=1.1e-08  Score=93.69  Aligned_cols=113  Identities=20%  Similarity=0.297  Sum_probs=81.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--------------hHHHHHhc-ccCCCcEEEEecCCccccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--------------GVAADVGH-INTRSEVAGYMGNDQLGQA   93 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--------------g~~~dl~~-~~~~~~v~~~~~t~d~~ea   93 (256)
                      |||+|+|. |+||...+..|++.||  +|+++|+++.+              |. .+|.. .....+++.   |+|++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgL-e~ll~~~~~~gRl~f---Ttd~~~a   73 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGL-EELLKENLASGRLRF---TTDYEEA   73 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccH-HHHHHhccccCcEEE---EcCHHHH
Confidence            79999997 9999999999999999  99999998311              11 11221 111224553   6788899


Q ss_pred             cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEe-cCCCCCchHH
Q 025206           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMI-SNPVNSTVPI  154 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-~~iiv~-tNPvd~~~~i  154 (256)
                      ++++|++||+.|+|+++.. -.     ++..+...++.|.++.+. +++++- |=|+...-.+
T Consensus        74 ~~~adv~fIavgTP~~~dg-~a-----Dl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v  130 (414)
T COG1004          74 VKDADVVFIAVGTPPDEDG-SA-----DLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV  130 (414)
T ss_pred             HhcCCEEEEEcCCCCCCCC-Cc-----cHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence            9999999999999988732 22     367788888888888866 444433 5688865443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.00  E-value=4.2e-09  Score=95.60  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=83.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h---hH---HH-HHhccc-----CCCcEEEEecCCccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GV---AA-DVGHIN-----TRSEVAGYMGNDQLGQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~---g~---~~-dl~~~~-----~~~~v~~~~~t~d~~ea   93 (256)
                      ..||+|||+ |.+|+.+|..++..|+  +|+++|++..  .   ..   .. .+....     ...+++.   +++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence            358999998 9999999999999999  9999999731  1   00   01 111110     0123332   4467788


Q ss_pred             cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +++||+|+.++              .+|.++.+++...+.+++|... |+.||.+..   ..+++....  -.|+|++|+
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~~--~~p~R~~g~  140 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYARA--THPERCVVG  140 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHhc--CCcccEEEE
Confidence            99999999984              3457778889999999995433 458998875   345565544  356889997

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.90  E-value=1.4e-08  Score=101.24  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HHHHH-----hcccC--------CCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VAADV-----GHINT--------RSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~~dl-----~~~~~--------~~~v~~~~~t~   88 (256)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|++.  + .+  ...+.     .+...        ..+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            4468999998 9999999999999999  999999983  1 11  11111     11110        123443   44


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++ +++++||+||.++              .+++++.+++..++++.+ |++++  .||.+..   -++++....  -.|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCc
Confidence            65 5789999999984              356889999999999999 56655  9999887   345666655  357


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      +|++|+
T Consensus       444 ~r~ig~  449 (714)
T TIGR02437       444 ENFCGM  449 (714)
T ss_pred             ccEEEE
Confidence            899998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.89  E-value=1.9e-08  Score=100.34  Aligned_cols=119  Identities=21%  Similarity=0.344  Sum_probs=86.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCC--c-hh--HHHHHh-----ccc--------CCCcEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN--T-PG--VAADVG-----HIN--------TRSEVAGYMGN   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~--~-~g--~~~dl~-----~~~--------~~~~v~~~~~t   87 (256)
                      ...||+|||| |.+|..+|..++ ..|+  +|+|+|.+.  + .+  ...+..     +..        ...+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            3468999998 999999999998 7899  999999973  1 11  111111     110        0123443   4


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      +++ +++++||+||.++              .+|.++.+++..++++++ |++++  .||.+..   -++++....  -.
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l---~i~~la~~~--~~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSL---PIGQIAAAA--AR  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHHhc--Cc
Confidence            565 6889999999984              457899999999999999 67665  8999887   346666655  35


Q ss_pred             CCcEEEE
Q 025206          167 EKKLFGV  173 (256)
Q Consensus       167 ~~kviG~  173 (256)
                      |+|++|+
T Consensus       440 p~r~ig~  446 (708)
T PRK11154        440 PEQVIGL  446 (708)
T ss_pred             ccceEEE
Confidence            7899998

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.89  E-value=1.8e-08  Score=90.16  Aligned_cols=118  Identities=14%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chh---HH---HH-Hhccc-C--------CCcEEEEecCCc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG---VA---AD-VGHIN-T--------RSEVAGYMGNDQ   89 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g---~~---~d-l~~~~-~--------~~~v~~~~~t~d   89 (256)
                      ..||+|||+ |.+|..+|..++..|+  +|+++|++.  +..   ..   +| +.+.. .        ..+++.   +++
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~   78 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD   78 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence            348999998 9999999999999999  999999983  111   10   11 11111 0        113332   456


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      + +++++||+||.++              .+|.++.+++...+++++  |++++  +||.+...   .+.+....  -.+
T Consensus        79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~~~--~~~  136 (286)
T PRK07819         79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAAAT--KRP  136 (286)
T ss_pred             H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCC
Confidence            6 6789999999994              345788888999999997  45554  88887753   23444433  356


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      +|++|+
T Consensus       137 ~r~~g~  142 (286)
T PRK07819        137 GRVLGL  142 (286)
T ss_pred             ccEEEE
Confidence            788887

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.89  E-value=1.8e-08  Score=100.66  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=85.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HH----HHH-hcccC--------CCcEEEEecCCc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VA----ADV-GHINT--------RSEVAGYMGNDQ   89 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~----~dl-~~~~~--------~~~v~~~~~t~d   89 (256)
                      ..||+|||| |.+|..+|..++..|+  +|+|+|++.  + .+  ..    ..+ .+...        ..+++.   +++
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  386 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD  386 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence            358999998 9999999999999999  999999983  1 11  11    011 11110        123443   456


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      + +++++||+||.++              .+++++.+++..++++++ |++++  .||.+..   -++++.....  .|+
T Consensus       387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~  444 (715)
T PRK11730        387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RPE  444 (715)
T ss_pred             H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CCc
Confidence            5 6789999999984              356889999999999999 56554  9999886   3456666553  578


Q ss_pred             cEEEE
Q 025206          169 KLFGV  173 (256)
Q Consensus       169 kviG~  173 (256)
                      |++|+
T Consensus       445 r~~g~  449 (715)
T PRK11730        445 NFCGM  449 (715)
T ss_pred             cEEEE
Confidence            99997

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.88  E-value=1.8e-08  Score=100.73  Aligned_cols=119  Identities=19%  Similarity=0.260  Sum_probs=86.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh--HHHHH-----hcccC--------CCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG--VAADV-----GHINT--------RSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g--~~~dl-----~~~~~--------~~~v~~~~~t~   88 (256)
                      +..||+|||| |.+|+.+|..++..|+  +|+|+|++.  + ++  ...+.     .....        ..+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            4468999998 9999999999999999  999999983  1 11  11111     11100        123443   45


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++ +++++||+||.++              .+|.++.+++..++++++ |++++  .||.+..   -++++.....  .|
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p  465 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSAL---PIKDIAAVSS--RP  465 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--Cc
Confidence            65 5789999999984              457899999999999999 56655  8999886   3456666553  57


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      +|++|+
T Consensus       466 ~r~ig~  471 (737)
T TIGR02441       466 EKVIGM  471 (737)
T ss_pred             cceEEE
Confidence            899997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.87  E-value=3.7e-09  Score=88.79  Aligned_cols=121  Identities=23%  Similarity=0.331  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc---------------c-CCCcEEEEecCCcccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI---------------N-TRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~---------------~-~~~~v~~~~~t~d~~e   92 (256)
                      |||+|||. |+||.++|..|+..|+  +|+.+|+++.  ....++..               . ...+++.   +++..+
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence            79999998 9999999999999999  9999999831  11111111               1 1234554   457778


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCchHHHHHHHHHhC
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~~~~i~~~~~~~~~  163 (256)
                      ++++||++|+|.++|..++.+ .     +...+.+.++.|.++. ++.++++=| =|+..+--++..++++.+
T Consensus        73 ai~~adv~~I~VpTP~~~~~~-~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS-P-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS-B-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             hhhccceEEEecCCCccccCC-c-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence            899999999999998766422 1     2344556666666655 445544444 477754333444556555

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.87  E-value=2e-08  Score=89.66  Aligned_cols=119  Identities=23%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHH-------HHhc--ccC---------CCcEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA-------DVGH--INT---------RSEVAGYMGND   88 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~-------dl~~--~~~---------~~~v~~~~~t~   88 (256)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|++.. .....       +...  ...         ..+++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            468999998 9999999999999998  9999999831 01111       1100  000         012332   45


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++++++++||+||++..              ++.+..+++.+++.++++ ++++  ++|.+..   ..+++.+...  .+
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence            77778999999999952              235667788888888875 5543  6777665   2345555442  45


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      .|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            688876

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.85  E-value=3.2e-08  Score=98.60  Aligned_cols=119  Identities=18%  Similarity=0.290  Sum_probs=85.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCC--c-hh--HH-HHHh----cccC--------CCcEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN--T-PG--VA-ADVG----HINT--------RSEVAGYMGN   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~--~-~g--~~-~dl~----~~~~--------~~~v~~~~~t   87 (256)
                      +..||+|||| |.+|+.+|..++ ..|+  +|+|+|++.  + .+  .. ..+.    ....        ..+++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            3468999998 999999999988 4799  999999983  1 11  11 1111    1000        123443   4


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      +++ +++++||+||.++              .+++++.+++..++++++ |++++  .||.+..   -++++....  -.
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l---~i~~la~~~--~~  434 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSL---PIGQIAAAA--SR  434 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCC---CHHHHHHhc--CC
Confidence            565 5789999999984              356888999999999999 56655  8999887   345666655  36


Q ss_pred             CCcEEEE
Q 025206          167 EKKLFGV  173 (256)
Q Consensus       167 ~~kviG~  173 (256)
                      |+|++|+
T Consensus       435 p~r~~g~  441 (699)
T TIGR02440       435 PENVIGL  441 (699)
T ss_pred             cccEEEE
Confidence            7899997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.82  E-value=4.7e-09  Score=89.43  Aligned_cols=121  Identities=17%  Similarity=0.321  Sum_probs=87.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-c-----hhHHHHHhccc-----------------CCCcEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-----PGVAADVGHIN-----------------TRSEVAG   83 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~-----~g~~~dl~~~~-----------------~~~~v~~   83 (256)
                      +.+.|+|+|| |.+|+.+|...++.|+  .|+|+|.++ +     +++...+.+..                 ...+++.
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4568999998 9999999999999999  999999983 1     22222222211                 0012332


Q ss_pred             EecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhC
Q 025206           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus        84 ~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~  163 (256)
                         ++++.+++.|||+||.+              ..+|+++.+++.+.+++.|+..-+ ..||.+.+   -++.+.... 
T Consensus        87 ---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~i-l~tNTSSl---~lt~ia~~~-  144 (298)
T KOG2304|consen   87 ---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTI-LATNTSSL---SLTDIASAT-  144 (298)
T ss_pred             ---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceE-Eeecccce---eHHHHHhhc-
Confidence               45777889999999776              568999999999999999964332 38999876   345555433 


Q ss_pred             CCCCCcEEEE
Q 025206          164 TYNEKKLFGV  173 (256)
Q Consensus       164 ~~~~~kviG~  173 (256)
                       -+|.|+.|+
T Consensus       145 -~~~srf~Gl  153 (298)
T KOG2304|consen  145 -QRPSRFAGL  153 (298)
T ss_pred             -cChhhhcee
Confidence             467899998

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.80  E-value=9.7e-08  Score=90.26  Aligned_cols=123  Identities=14%  Similarity=0.013  Sum_probs=82.6

Q ss_pred             ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~   96 (256)
                      +.+=++-...++|||.|+||+||||++++..|+.+|+  +|+.+|.... +....+.+......+....+ +-+.+.+.+
T Consensus       109 ~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~  184 (436)
T PLN02166        109 TGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLE  184 (436)
T ss_pred             cCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccC
Confidence            4444666677789999999999999999999999998  9999997521 11011111100112332221 122345789


Q ss_pred             CCEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+||++|+...  ....+..+.+..|+....++++.+++.+.  .+|++|
T Consensus       185 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        185 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             CCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            999999997532  22234567788999999999999998763  565554

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=1.9e-07  Score=83.17  Aligned_cols=118  Identities=22%  Similarity=0.384  Sum_probs=77.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhH------HHHHhccc-C--------CCcEEEEecCCc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV------AADVGHIN-T--------RSEVAGYMGNDQ   89 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~------~~dl~~~~-~--------~~~v~~~~~t~d   89 (256)
                      .+||+|||+ |.+|..++..++..|+  +|+++|++..   .+.      ..++.+.. .        ..+++.   +++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            458999998 9999999999999998  9999999831   110      01111111 0        013332   345


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      + +++++||+||+++.              ++..+.+++.+.+.++++ ++++  +||.....   ++.+....+  .+.
T Consensus        77 ~-~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD  134 (282)
T ss_pred             H-HHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence            4 46899999999951              235566788888888884 5554  67776652   334555443  456


Q ss_pred             cEEEE
Q 025206          169 KLFGV  173 (256)
Q Consensus       169 kviG~  173 (256)
                      |++|+
T Consensus       135 r~ig~  139 (282)
T PRK05808        135 KVIGM  139 (282)
T ss_pred             ceEEe
Confidence            78887

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.69  E-value=6e-07  Score=77.13  Aligned_cols=147  Identities=21%  Similarity=0.173  Sum_probs=85.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||++|.+|++++..|+..|+  +|.++|.+.  ......+..+...  ....+...  ++..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence            6899998449999999999999997  999998873  2222222211100  00111111  13357889999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCc------------hHHHHHHHHHhCCCCC-CcEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST------------VPIAAEVFKKAGTYNE-KKLF  171 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~------------~~i~~~~~~~~~~~~~-~kvi  171 (256)
                      ..                ..+.++++.+....++.++|-++||.+.-            . -.++.+++.  +|+ .+|+
T Consensus        77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~-s~~e~l~~~--~p~~~~VV  137 (219)
T TIGR01915        77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEG-SAAEQAAAL--LPETSRVV  137 (219)
T ss_pred             CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCC-cHHHHHHHh--CCCCCeEe
Confidence            31                12234444454443446888899998730            0 112444444  666 7887


Q ss_pred             EE-eechHHHHHHHHHHHcCCCCCceeEEEEeCC
Q 025206          172 GV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGH  204 (256)
Q Consensus       172 G~-t~lds~R~~~~la~~l~v~~~~v~~~v~G~H  204 (256)
                      .. .++....+.    . . ..+.....++.|++
T Consensus       138 ka~~~~~a~~~~----~-~-~~~~~~~~~v~Gdd  165 (219)
T TIGR01915       138 AAFHNLSAVLLQ----D-V-DDEVDCDVLVCGDD  165 (219)
T ss_pred             eccccCCHHHhc----C-C-CCCCCCCEEEECCC
Confidence            77 445432222    1 1 23344557788876

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.68  E-value=3.9e-07  Score=86.92  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=75.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-------c--------CCCcEEEEecCCcccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-------N--------TRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-------~--------~~~~v~~~~~t~d~~e   92 (256)
                      +|||+|+|+ |+||.++|..|+..|+.-+|+.+|+++.+  ...++..       .        ....+..   ++++.+
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence            579999998 99999999999988643389999998311  1111111       0        0112332   456677


Q ss_pred             ccCCCCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCCch
Q 025206           93 ALEDSDVVIIPAGVPRKPGM----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTV  152 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~--tNPvd~~~  152 (256)
                      ++++||++|+|.++|..++.    ...     ++..+.+.++.|.++.+++.+|+.  |-|....-
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~~~~-----Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~  135 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE  135 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCCCCC-----cHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence            89999999999999975321    122     245577788888877754434333  56888543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.68  E-value=1.9e-07  Score=83.60  Aligned_cols=117  Identities=15%  Similarity=0.298  Sum_probs=75.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHH-H-------Hh---cccC---------CCcEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA-D-------VG---HINT---------RSEVAGYMGN   87 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~-d-------l~---~~~~---------~~~v~~~~~t   87 (256)
                      .||+|||+ |.+|..++..++..|+  +|+++|++.. ..... .       +.   +...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999998 9999999999999998  9999999831 11110 0       11   1000         011222   3


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      +++ +++++||+||++...              +.++.+++.+++.++++ ++++  +||....   ..+++.....  .
T Consensus        78 ~~~-~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~~--~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATALE--R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhcC--C
Confidence            454 578999999999522              24556777888888874 5554  5776664   2345554442  4


Q ss_pred             CCcEEEE
Q 025206          167 EKKLFGV  173 (256)
Q Consensus       167 ~~kviG~  173 (256)
                      +.|++|+
T Consensus       136 ~~r~ig~  142 (291)
T PRK06035        136 KDRFIGM  142 (291)
T ss_pred             cccEEEE
Confidence            6788887

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.65  E-value=1.4e-07  Score=86.27  Aligned_cols=169  Identities=15%  Similarity=0.073  Sum_probs=102.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhc---ccCCCcEEEEecC----CccccccCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH---INTRSEVAGYMGN----DQLGQALED   96 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~---~~~~~~v~~~~~t----~d~~eal~~   96 (256)
                      .+++||.|+||+||+|++++..|+.+|.  +|+.+|....  .....++..   .....+++.+.++    .++.+.+++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            3568999999999999999999999997  9999997521  111111110   0000123333221    123445789


Q ss_pred             CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCCchHHHHHHHHHhCCCCCC
Q 025206           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        97 aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP------vd~~~~i~~~~~~~~~~~~~~  168 (256)
                      +|+||++|+....+  ..+..+....|+....++++.+++.... .++.+|..      .+.  ++    ..... ..|.
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~----~e~~~-~~p~  162 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK----IEERI-GRPL  162 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC----CCCCC-CCCC
Confidence            99999999764321  1344567888999999999999887543 34444421      010  00    00111 2244


Q ss_pred             cEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ...|.+.+...++....++..+++..-++ ..++|.+
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            45666555444554555666788888887 5688965

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.64  E-value=1.6e-07  Score=83.82  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=73.8

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEE-EecCCccccccCCCCEEEEecCCCCCC
Q 025206           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRKP  110 (256)
Q Consensus        32 ~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~eal~~aDvVIi~ag~~~~~  110 (256)
                      .|+||+||+|++++..|+++|...+|+.+|+........++.+.....-+.. .....++.+++++||+||++|......
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            3899999999999999999995559999998742111112222111000111 111346778999999999998754333


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206          111 G-MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (256)
Q Consensus       111 g-~~r~d~~~~N~~i~~~i~~~i~~~~p~  138 (256)
                      + ..+..++..|+...+.+++.+.+.+..
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk  109 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK  109 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3 356678899999999999999987654

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.62  E-value=5.4e-07  Score=80.62  Aligned_cols=119  Identities=20%  Similarity=0.351  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHH----HHh----cccCC--------CcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVG----HINTR--------SEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~----dl~----~~~~~--------~~v~~~~~t~   88 (256)
                      ..+||+|||+ |.+|..+|..|+..|+  +|+++|.+..  .....    .+.    ....+        .+++.   ++
T Consensus         3 ~~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~   76 (292)
T PRK07530          3 AIKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---AT   76 (292)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eC
Confidence            4569999998 9999999999999998  9999999831  11001    110    11110        12332   34


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++ +++++||+||++...              +..+.+.+.+.+.+++ |++++  +||.+...   .+.+.+..  -.+
T Consensus        77 ~~-~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~  134 (292)
T PRK07530         77 DL-EDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRP  134 (292)
T ss_pred             CH-HHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCc
Confidence            54 468999999998521              1234456666777777 56655  46766642   23454443  235


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      .|++|+
T Consensus       135 ~r~~g~  140 (292)
T PRK07530        135 ERFIGI  140 (292)
T ss_pred             ccEEEe
Confidence            677775

>PLN02427 UDP-apiose/xylose synthase

Probab=98.60  E-value=4.5e-07  Score=83.96  Aligned_cols=117  Identities=14%  Similarity=0.073  Sum_probs=74.9

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcc---cCCCcEEEEec----CCccccccC
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGYMG----NDQLGQALE   95 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~---~~~~~v~~~~~----t~d~~eal~   95 (256)
                      +..++|||.|+||+||+|++++..|+.+ ++  +|+.+|.+...  ...+...   .....++...+    ..++.++++
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~   85 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK   85 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence            3446789999999999999999999987 46  89999875311  1111111   00112333221    123456788


Q ss_pred             CCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++|+||++|+.....  ..+..+.+..|+....++++.+++.+  ..+|.+|.
T Consensus        86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            999999999854221  12334556778888888888887765  35665653

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.60  E-value=7.4e-07  Score=85.15  Aligned_cols=191  Identities=19%  Similarity=0.262  Sum_probs=119.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----CccccccCC--CC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aD   98 (256)
                      +.+.|.|+||+|++|+.++..++..+. .+|+++|.++  ......++.+.....+++.+.++    ..+.+++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            456899999999999999999988754 6999999985  33344555542112223333221    235567888  99


Q ss_pred             EEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206           99 VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus        99 vVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t----NPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      +|+++|....-|-  .+..+-+..|+--.++++++..+++-+.++++.|    ||.++|                    |
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------------G  387 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------------G  387 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh--------------------h
Confidence            9999998765553  3567778999999999999999998777776665    666643                    2


Q ss_pred             EeechHHHHHHHHHHHcC---CCCCcee-EEEEeCCCCCceeecccc-cccCCCC--CHHH-------HHHHHHHHHhhH
Q 025206          173 VTTLDVVRAKTFYAGKAN---VNVAEVN-VPVVGGHAGITILPLFSQ-ATPKANL--ADED-------IKALTKRTQDGG  238 (256)
Q Consensus       173 ~t~lds~R~~~~la~~l~---v~~~~v~-~~v~G~Hg~~~~vp~~s~-~~~~~~~--~~~~-------~~~i~~~v~~~~  238 (256)
                      .|..-+..+-...++..+   -...-|+ +-|+|..|  |.+|+|.. ..-++|+  ++-+       ++|-.+.|-+++
T Consensus       388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~  465 (588)
T COG1086         388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAG  465 (588)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHH
Confidence            221111111122222111   1222344 67999885  89999953 3334443  2221       355555565555


Q ss_pred             HH
Q 025206          239 TE  240 (256)
Q Consensus       239 ~~  240 (256)
                      ..
T Consensus       466 a~  467 (588)
T COG1086         466 AI  467 (588)
T ss_pred             hh
Confidence            43

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.59  E-value=8e-07  Score=84.22  Aligned_cols=123  Identities=15%  Similarity=0.028  Sum_probs=80.3

Q ss_pred             ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~   96 (256)
                      +.+.++-...+.|||.|+||+||||++++..|+++|+  +|+.+|.... +....+.+.....+++...++ -+..++.+
T Consensus       108 ~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~  183 (442)
T PLN02206        108 GGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLE  183 (442)
T ss_pred             CCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcC
Confidence            3444555555678999999999999999999999998  9999986421 000111110001123322211 22346678


Q ss_pred             CCEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+||++|+...  ....+..+.+..|+....++++.+++...  .+|++|
T Consensus       184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S  232 (442)
T PLN02206        184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS  232 (442)
T ss_pred             CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            999999997542  11234567788999999999999987753  555554

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.58  E-value=4.2e-07  Score=87.33  Aligned_cols=120  Identities=22%  Similarity=0.301  Sum_probs=79.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--ch-h--HH----HHHhccc-C--------CCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP-G--VA----ADVGHIN-T--------RSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~-g--~~----~dl~~~~-~--------~~~v~~~~~t~   88 (256)
                      +..||+|||+ |.+|+.+|..++..|+  +|+++|++.  +. +  ..    ..+.... .        ..+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            3458999998 9999999999999999  999999983  11 1  00    1111111 0        112332   34


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      ++ +++++||+||.+.              .++..+.+.+...+.+++++..+ ++||.+...   .+++.....  .|.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--ccc
Confidence            65 4678999999984              23467777888889999854433 488888763   345554442  467


Q ss_pred             cEEEE
Q 025206          169 KLFGV  173 (256)
Q Consensus       169 kviG~  173 (256)
                      |++|+
T Consensus       137 r~~G~  141 (503)
T TIGR02279       137 RVAGL  141 (503)
T ss_pred             ceEEE
Confidence            78887

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=4.5e-07  Score=80.99  Aligned_cols=118  Identities=17%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h---hHHHHHhcc-----cC--------CCcEEEEecCCcc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GVAADVGHI-----NT--------RSEVAGYMGNDQL   90 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~---g~~~dl~~~-----~~--------~~~v~~~~~t~d~   90 (256)
                      .||+|||+ |.+|..+|..|+..|+  +|+++|++..  .   ....++...     ..        ...++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999998 9999999999999998  9999999831  1   111111100     00        012332   3466


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k  169 (256)
                      ++++++||+||.+...              +..+.+.+..++.+++ |++++  ++|.+..-  + +++.....  .+.+
T Consensus        76 ~~~~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il--~~~tSt~~--~-~~l~~~~~--~~~r  134 (288)
T PRK09260         76 KAAVADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI--ATNTSTMS--P-TEIASFTK--RPER  134 (288)
T ss_pred             HHhhcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC--H-HHHHhhcC--Cccc
Confidence            7789999999998531              2344556666677777 45544  55655532  2 33444332  3456


Q ss_pred             EEEE
Q 025206          170 LFGV  173 (256)
Q Consensus       170 viG~  173 (256)
                      ++|+
T Consensus       135 ~~g~  138 (288)
T PRK09260        135 VIAM  138 (288)
T ss_pred             EEEE
Confidence            6664

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.56  E-value=5.6e-07  Score=86.64  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hh--HHHH----Hh-cccC--------CCcEEEEecCCc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VG-HINT--------RSEVAGYMGNDQ   89 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g--~~~d----l~-~~~~--------~~~v~~~~~t~d   89 (256)
                      ..||+|||+ |.+|..+|..++..|+  +|+++|++..   .+  ...+    +. +...        ..+++.   +++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   80 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA   80 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999998 9999999999999999  9999999831   11  1111    11 1100        112443   345


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      + +++++||+||.+.              .++..+.+.+...+.+.+ |++++  +||.+.+-  + +++....  -.|+
T Consensus        81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~--i-~~la~~~--~~p~  138 (507)
T PRK08268         81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS--I-TAIAAAL--KHPE  138 (507)
T ss_pred             H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC--H-HHHHhhc--CCcc
Confidence            4 4678999999984              234667777778899888 56554  67776652  2 3454444  3568


Q ss_pred             cEEEE
Q 025206          169 KLFGV  173 (256)
Q Consensus       169 kviG~  173 (256)
                      |++|+
T Consensus       139 r~~G~  143 (507)
T PRK08268        139 RVAGL  143 (507)
T ss_pred             cEEEE
Confidence            88887

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.55  E-value=2e-07  Score=76.11  Aligned_cols=94  Identities=27%  Similarity=0.411  Sum_probs=63.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc---C-----CCcEEEEecCCccccccCCCCEEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---T-----RSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~---~-----~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      ||+|+|| |..|.++|..|..+|+  +|.|++.++.....+.-.+..   .     +..+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999998 9999999999999998  999999874211112222221   1     123443   568889999999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ++.  |              ....+++++++..+- ++..+++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            984  2              233578888888887 445555544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=1.2e-06  Score=78.91  Aligned_cols=119  Identities=17%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHh---c---c-c----CCCcEEEEecCCcccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---H---I-N----TRSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~---~---~-~----~~~~v~~~~~t~d~~eal   94 (256)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|.+..  ......+.   .   . .    ...+++.   ++++.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            358999998 9999999999999998  9999998731  11111110   0   0 0    0011222   34556678


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++||+||++...              ......++...+...++ ++++  +||.+...   ++++.+...  .+.+++|+
T Consensus        78 ~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT  136 (311)
T ss_pred             ccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence            999999998521              12334556666777664 4444  46665542   334544432  34677776

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.50  E-value=1.3e-07  Score=84.51  Aligned_cols=119  Identities=21%  Similarity=0.255  Sum_probs=73.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEE----EecC----CccccccC--CCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG----YMGN----DQLGQALE--DSD   98 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~----~~~t----~d~~eal~--~aD   98 (256)
                      |.|+||+|++|+.++..|+..+. .+|+++|.++  +.....++.......+++.    ..++    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999998875 5899999984  3334444531111111221    1111    12345677  999


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCC
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNS  150 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t----NPvd~  150 (256)
                      +|+++|....-+  .....+.+..|+--.+++++...+++.+-++.+.|    ||+++
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnv  137 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNV  137 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcH
Confidence            999999754322  23567788999999999999999998776666665    67774

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.48  E-value=3.3e-06  Score=76.62  Aligned_cols=176  Identities=13%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .+++|.|+||+|++|++++..|+++|+  +|++++.+.. .....++.......+++.+.+    ..++.+.++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            456899999999999999999999998  8877766531 111111111100012332221    123456678999999


Q ss_pred             EecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------chHHHHHH-H----HHhCCCCCC
Q 025206          102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-------TVPIAAEV-F----KKAGTYNEK  168 (256)
Q Consensus       102 i~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~-------~~~i~~~~-~----~~~~~~~~~  168 (256)
                      ++|+.......+. .+++..|+.....+++.+.+...-..+|++|.-...       ......+- +    ......++.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            9998532221222 345678999999999998876422345545431100       00000000 0    000002233


Q ss_pred             cEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ...|.+.+-..++....++..+++..-++ ..|+|++
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            33444444344444555666787766666 4588865

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.46  E-value=1.8e-06  Score=77.89  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHH--------HHHhcccC---------CCcEEEEecCCcc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA--------ADVGHINT---------RSEVAGYMGNDQL   90 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~--------~dl~~~~~---------~~~v~~~~~t~d~   90 (256)
                      +||+|||+ |.+|++++..|+..|+  +|+++|.++.. ...        ..+.+...         ..+++.   ++++
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~~   76 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDSL   76 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECcH
Confidence            58999998 9999999999999998  99999998411 100        01211110         112332   3467


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      .+++++||+|+++...              +....+.+...+.+..++..++ .||....   ...++.+...  .+.++
T Consensus        77 ~~a~~~ad~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~~  136 (308)
T PRK06129         77 ADAVADADYVQESAPE--------------NLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRERC  136 (308)
T ss_pred             HHhhCCCCEEEECCcC--------------CHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--CcccE
Confidence            7789999999998521              1333445566677777554444 5665543   2344555432  34566


Q ss_pred             EEE
Q 025206          171 FGV  173 (256)
Q Consensus       171 iG~  173 (256)
                      ++.
T Consensus       137 ~~~  139 (308)
T PRK06129        137 LVA  139 (308)
T ss_pred             EEE
Confidence            665

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.45  E-value=6.2e-07  Score=80.33  Aligned_cols=119  Identities=23%  Similarity=0.340  Sum_probs=73.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hH--------HHHHhcccC---------CCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV--------AADVGHINT---------RSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~--------~~dl~~~~~---------~~~v~~~~~t~   88 (256)
                      +..||+|||+ |.+|..+|..++..|+  +|+++|.+... ..        ..++.+...         ...+..   ++
T Consensus         3 ~~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~   76 (295)
T PLN02545          3 EIKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TT   76 (295)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eC
Confidence            3458999998 9999999999999998  99999987311 10        011211110         011221   33


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      +. +++++||+||.+..              ++..+...+...+.++. |++++  +||.+.+.   .+++.+...  .+
T Consensus        77 ~~-~~~~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~~--~~  134 (295)
T PLN02545         77 NL-EELRDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASATQ--RP  134 (295)
T ss_pred             CH-HHhCCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CC
Confidence            43 57899999999852              22445566667777776 55544  57766652   233443332  34


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      .+++|+
T Consensus       135 ~r~~g~  140 (295)
T PLN02545        135 QQVIGM  140 (295)
T ss_pred             cceEEE
Confidence            677776

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.45  E-value=3.9e-06  Score=75.23  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc-cCCCcEEEEec----CCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .++|.|+||+|++|++++..|+.+|+  +|++++.+... .....+... ....+++.+.+    ...+.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            46899999999999999999999998  89888776321 111122111 00112222221    123556788999999


Q ss_pred             EecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206          102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t  145 (256)
                      ++|+......... .+.+..|+.....+++.+.+. ... .+|++|
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S  126 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS  126 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence            9998543211222 356788999999999998876 433 444444

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.43  E-value=1e-06  Score=83.46  Aligned_cols=174  Identities=17%  Similarity=0.223  Sum_probs=99.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh------------HHHHHh---cccCCCcEEEEecC-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG------------VAADVG---HINTRSEVAGYMGN-   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g------------~~~dl~---~~~~~~~v~~~~~t-   87 (256)
                      +++||.|+||+||||++++..|+.+|+  +|+++|...  . ..            ....+.   +.. ...++.+.++ 
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            557999999999999999999999998  999998431  0 00            000111   000 0112222211 


Q ss_pred             ---CccccccC--CCCEEEEecCCCCCC-C-CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------C---C
Q 025206           88 ---DQLGQALE--DSDVVIIPAGVPRKP-G-MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------P---V  148 (256)
Q Consensus        88 ---~d~~eal~--~aDvVIi~ag~~~~~-g-~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN------P---v  148 (256)
                         ..+.++++  ++|+||++|+....+ . .+.   ...+..|+.....+++.+.+++....++.+|.      |   +
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence               12334455  489999998653221 1 111   23356799999999999988876545554441      1   1


Q ss_pred             CCchHH-HHHHH-HHh--CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          149 NSTVPI-AAEVF-KKA--GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       149 d~~~~i-~~~~~-~~~--~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +.. ++ ..+.. ...  .-..|...+|.+.+....+....++..|++..-++ ..|+|.+
T Consensus       203 ~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~  262 (442)
T PLN02572        203 EEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR  262 (442)
T ss_pred             ccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence            100 00 00000 000  00234457777655555566666788898887777 5689976

>PLN02650 dihydroflavonol-4-reductase

Probab=98.43  E-value=4e-06  Score=76.46  Aligned_cols=175  Identities=14%  Similarity=0.067  Sum_probs=96.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhc-ccCCCcEEEEec----CCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~-~~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .++|.|+||+|++|++++..|+..|+  +|++++.+... ....++.. ......++.+.+    ...+.++++++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            45899999999999999999999998  99888765311 11112211 111112222221    123456788999999


Q ss_pred             EecCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHH-HHHHHHHhCC---------CCCCcE
Q 025206          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI-AAEVFKKAGT---------YNEKKL  170 (256)
Q Consensus       102 i~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i-~~~~~~~~~~---------~~~~kv  170 (256)
                      ++|+.......+ ..+.+..|+.....+++.+.+.+.-..+|++|.....-..- -...+.+...         .++...
T Consensus        83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  162 (351)
T PLN02650         83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWM  162 (351)
T ss_pred             EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccch
Confidence            999753221112 23567889999999999998765223555554321100000 0000000000         001113


Q ss_pred             EEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          171 FGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +|.+.+....+-...++..|++..-++ ..|+|++
T Consensus       163 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~  197 (351)
T PLN02650        163 YFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF  197 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence            444444444444455667788776666 5688864

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.43  E-value=3.5e-06  Score=76.20  Aligned_cols=117  Identities=15%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--ch--hHHHHHhcccCCCcEEEEe----cCCccccccCCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~--g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aD   98 (256)
                      ..++|+|+||+||||+.++..|+++|+  +|+--=++.  .+  ....+|....  .++..+.    ....+.+++++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999999  777664432  11  2344444322  1233332    1234668999999


Q ss_pred             EEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        99 vVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      .|+++|....-... ...+++.-+++...++.+.++++. ...=+++|+..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~  130 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST  130 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence            99999975432222 244678888999999999999887 33333455443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.43  E-value=1.7e-06  Score=83.07  Aligned_cols=119  Identities=14%  Similarity=0.157  Sum_probs=74.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh-HHHH--------Hh---cccC--CCcEEEEecCCcccccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT--RSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g-~~~d--------l~---~~~~--~~~v~~~~~t~d~~eal   94 (256)
                      +||+|||+ |.+|+.+|..|+..|+  +|+++|.+.... ...+        +.   ....  ..+++.   ++++.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999998 9999999999999999  999999983211 1000        00   0000  012332   34667789


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++||+|+.+..              ++..+.+.+...+.+.+++.. |+.||.++..   .+++.+..  -.+.++++.
T Consensus        79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~---~s~l~~~~--~~~~r~~~~  137 (495)
T PRK07531         79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFL---PSDLQEGM--THPERLFVA  137 (495)
T ss_pred             cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCC---HHHHHhhc--CCcceEEEE
Confidence            99999999852              124455666667777775443 3477877753   23444433  235566665

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.41  E-value=3.2e-06  Score=75.02  Aligned_cols=167  Identities=13%  Similarity=0.073  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-hHHHHHhcccCCCcEEEEec----CCccccccCC--CCEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDVV  100 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~--aDvV  100 (256)
                      ||.|+||+|++|+.++..|+..+...+|+++|....  . ....++...   ..++.+.+    ..++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999999988763238898886421  1 111122111   11222221    1234456666  8999


Q ss_pred             EEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       101 Ii~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-----d~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |++|+....  ........+..|......+++.+.+...+..++.+|...     ....++     ......++...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999975421  122344567889999999999988875555566555310     000000     00111223334455


Q ss_pred             eechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +.....++-..+++..+++..-++ ..++|.+
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            443444444455666777666666 4477743

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.41  E-value=3.1e-06  Score=83.98  Aligned_cols=178  Identities=13%  Similarity=0.113  Sum_probs=105.4

Q ss_pred             ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---c-c
Q 025206           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---Q-L   90 (256)
Q Consensus        17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d-~   90 (256)
                      +.|++.-+-.+.|||.|+||+||+|++++..|+.. |+  +|+.+|.+... . .++...   ..++.+.++ .   + +
T Consensus       304 ~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~~---~~~~~~~gDl~d~~~~l  376 (660)
T PRK08125        304 LNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLGH---PRFHFVEGDISIHSEWI  376 (660)
T ss_pred             ecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcCC---CceEEEeccccCcHHHH
Confidence            45555555556789999999999999999999875 67  99999976321 1 111110   123322211 1   1 3


Q ss_pred             ccccCCCCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch----HHHHHHHHH--h
Q 025206           91 GQALEDSDVVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKK--A  162 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~----~i~~~~~~~--~  162 (256)
                      .++++++|+||++|+....  ...+..+.+..|+....++++.+.++.+  .+|.+|.. .+..    ....|-...  .
T Consensus       377 ~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~--~~V~~SS~-~vyg~~~~~~~~E~~~~~~~  453 (660)
T PRK08125        377 EYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNK--RIIFPSTS-EVYGMCTDKYFDEDTSNLIV  453 (660)
T ss_pred             HHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCC--eEEEEcch-hhcCCCCCCCcCcccccccc
Confidence            4567899999999975432  2234566778899999999999998763  45545431 1000    000000000  0


Q ss_pred             CCC-CCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          163 GTY-NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       163 ~~~-~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +.. ++....|.+.+-..++-...++..+++..-++ ..|+|.+
T Consensus       454 ~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        454 GPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             CCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            000 12235666655455555556777788877777 4588864

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.40  E-value=8.6e-06  Score=73.66  Aligned_cols=114  Identities=20%  Similarity=0.415  Sum_probs=77.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--c--------CCCcEEEEecCCccccccCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N--------TRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--~--------~~~~v~~~~~t~d~~eal~~a   97 (256)
                      ++||+|+|+ |.=|.++|..|+.+++  +|+|+..++  ..+.++.+.  .        ++..++   .++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence            479999998 9999999999999998  999998873  222333322  1        122333   267899999999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC---CCCCchHHHHHHHHHhCCCCCCc
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN---PVNSTVPIAAEVFKKAGTYNEKK  169 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN---Pvd~~~~i~~~~~~~~~~~~~~k  169 (256)
                      |+||+..  |              ...++++++++..+- ++.+++.+|-   |-..  ..+++++++.  +|..+
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~  128 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP  128 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe
Confidence            9999984  2              344666777775444 6677777763   3322  2456666655  45444

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.37  E-value=5.7e-06  Score=75.38  Aligned_cols=175  Identities=14%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC--CCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~--~aDvVI  101 (256)
                      ++||.|+||+|++|++++..|..+|. ..++++|.....+....+.+......+....+    ..++.++++  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            35899999999999999999999886 24666775421111111211100011221111    123344555  489999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCCCCchHH--HHHHHHHhCCCCCCc
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPI--AAEVFKKAGTYNEKK  169 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-~~iiv~tNPvd~~~~i--~~~~~~~~~~~~~~k  169 (256)
                      ++||.....  .....+.+..|+.....+++.+.++.       +. ..++.+|... +....  ......+.....+..
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~~~~~p~s  158 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTETTPYAPSS  158 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCCCCCCCCC
Confidence            999864321  12345677889999999999987652       11 2455454321 00000  000000011122334


Q ss_pred             EEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      .+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       159 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        159 PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY  194 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            4555555555666666777787766666 5688865

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.37  E-value=4.2e-06  Score=78.06  Aligned_cols=110  Identities=20%  Similarity=0.243  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC------------CCcEEEEecCCccccccCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~eal~~   96 (256)
                      |||+|||+ |+||..+|..++. |+  +|+.+|+++.+  ...+.+...            ....+. ..+++..++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcC
Confidence            58999998 9999999987774 77  99999998311  111111000            011121 124455677899


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCC
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~  150 (256)
                      ||+||++.+.|........     ++..+++.++.|.+..|+.++|+- |-|.+.
T Consensus        74 ad~vii~Vpt~~~~k~~~~-----dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNYF-----NTSSVESVIKDVVEINPYAVMVIKSTVPVGF  123 (388)
T ss_pred             CCEEEEeCCCCCccCCCCc-----ChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence            9999999887743221112     234455555666554455555444 457664

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.36  E-value=2.2e-06  Score=77.36  Aligned_cols=105  Identities=11%  Similarity=0.018  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi~a  104 (256)
                      |||.|+||+|++|++++..|..+|+  +|+.++++....  ..+.+..    ++...+    ..++.++++++|+||+++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~----v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG----AELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC----CEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            5899999999999999999999998  999998763211  1112111    221111    234567899999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +....   +..+....|......+++.+++.+.+ .+|.+|
T Consensus        73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            64321   12234556777888899988887754 445444

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.33  E-value=8.7e-06  Score=74.26  Aligned_cols=172  Identities=15%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEec----CCccccccCC--CCE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~--aDv   99 (256)
                      .++|.|+||+|++|++++..|++.|+  +|+.+|.+...  .....+.. .  .++....+    ..++.+.+++  .|+
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~   78 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI   78 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence            36899999999999999999999998  99999876321  11111111 0  01211111    1133344554  599


Q ss_pred             EEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (256)
Q Consensus       100 VIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld  177 (256)
                      ||++|+.+...  ..+....+..|+.....+++.+.+.+....+|++|...-.-.+-...-..+....++...+|.+..-
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~  158 (349)
T TIGR02622        79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKAC  158 (349)
T ss_pred             EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHH
Confidence            99999854221  1234566788999999999998776533356666542100000000000001112334456665443


Q ss_pred             HHHHHHHHHHHc-------CCCCCcee-EEEEeCC
Q 025206          178 VVRAKTFYAGKA-------NVNVAEVN-VPVVGGH  204 (256)
Q Consensus       178 s~R~~~~la~~l-------~v~~~~v~-~~v~G~H  204 (256)
                      ..++-..+++.+       +++...++ ..++|.+
T Consensus       159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            444444455544       55555565 4577753

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.33  E-value=5.2e-06  Score=75.62  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=71.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVI  101 (256)
                      +|||.|+||+|++|++++..|+.. ++  +|+.+|....  ...++...   ..++.+.++     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            468999999999999999999875 56  8999986421  11112111   123322211     12234568999999


Q ss_pred             EecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          102 IPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++|+....  ...+....+..|+....++++.+.+..  ..+|.+|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            99875322  223345556778888889999888764  35555553

>PLN02214 cinnamoyl-CoA reductase

Probab=98.30  E-value=1.1e-05  Score=73.76  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      +++|.|+||+|++|++++..|+.+|+  +|+.++.+...   .....+...  ...+....+    ..++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999998  89988775211   111122111  012222221    12455678899999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++|+...   ....+.+..|+.....+++.+.+.... .+|++|
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S  126 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS  126 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence            99998542   234566788999999999999887644 444444

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.29  E-value=3.1e-06  Score=75.38  Aligned_cols=164  Identities=17%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccC-CCcEEEEecCCcccccc--CCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINT-RSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~-~~~v~~~~~t~d~~eal--~~aDvVIi~a  104 (256)
                      |+|.|+|++|+|||+.+..|++.|+  +|+.+|.... ...+.+-.+..+ ...+..   ..-+.+.+  ...|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999999  9999998621 111111110110 011111   00112222  3789999998


Q ss_pred             CCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCCchHHHHHHHHHhCCCCCCcEEEEeech
Q 025206          105 GVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-----SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (256)
Q Consensus       105 g~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-----tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~ld  177 (256)
                      |...-+.  +..+.++..|+--...+++.|.+++.+-+|...     .+|...  || +|   ... ..|.+-.|-|.|-
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E---~~~-~~p~NPYG~sKlm  148 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE---TSP-LAPINPYGRSKLM  148 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC---CCC-CCCCCcchhHHHH
Confidence            8643221  347889999999999999999999977665432     244442  22 11   111 3466778888887


Q ss_pred             HHHHHHHHHHHcCCCCCceeEE-EEeCC
Q 025206          178 VVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~~~-v~G~H  204 (256)
                      +.++.+.+++..+..-.-.+.+ +.|-|
T Consensus       149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         149 SEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            8888888888888666555644 77755

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.27  E-value=6.3e-06  Score=73.72  Aligned_cols=108  Identities=17%  Similarity=0.121  Sum_probs=73.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi~a  104 (256)
                      |||.|+||+|++|++++..|+.+|.  +|+++|.+....  .++.+..    ++...    ...++.++++++|+||+++
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~----~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLD----VEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCC----ceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            5899999999999999999999997  999999863211  1111111    11111    1124556788999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.......+..+....|+.....+++.+.+.+.. .+|++|
T Consensus        73 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  112 (328)
T TIGR03466        73 ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS  112 (328)
T ss_pred             eecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            7543223445667788999999999988876533 444444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.27  E-value=4.2e-06  Score=77.38  Aligned_cols=170  Identities=11%  Similarity=0.014  Sum_probs=95.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      +.|||.|+||+|+||++++..|...|+  +|+.+|..... .   +......  ...+.+    ...+.++++++|+||+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~~--~~~~~~Dl~d~~~~~~~~~~~D~Vih   91 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMFC--HEFHLVDLRVMENCLKVTKGVDHVFN   91 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---ccccccc--ceEEECCCCCHHHHHHHHhCCCEEEE
Confidence            457999999999999999999999998  99999975211 0   0000000  111111    1123345679999999


Q ss_pred             ecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCc-hHHHH---HHHHHhC-CCCCCcEEEEe
Q 025206          103 PAGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-VPIAA---EVFKKAG-TYNEKKLFGVT  174 (256)
Q Consensus       103 ~ag~~~~~g---~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~-~~i~~---~~~~~~~-~~~~~kviG~t  174 (256)
                      +|+.....+   .+....+..|+.....+++.+++.... .+|++|...-.- .....   -+..... ..++...+|.+
T Consensus        92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s  170 (370)
T PLN02695         92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE  170 (370)
T ss_pred             cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence            997532111   122334678999999999999887655 344454321000 00000   0000000 02233344544


Q ss_pred             echHHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg  205 (256)
                      .....++-...++..|++..-++ ..++|.++
T Consensus       171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            44444444445666788777777 45888763

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.26  E-value=6.3e-06  Score=74.68  Aligned_cols=114  Identities=15%  Similarity=0.223  Sum_probs=75.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      +.++|.|+||+|++|++++..|+.+|...+|+++|.+....  ...++..    ..+..+.+    ..++.++++++|+|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~V   78 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYV   78 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence            34689999999999999999999876223899998763221  1111211    12222221    12345667889999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++||....+  ..+..+.+..|+.....+++.+.+.+.. .+|++|
T Consensus        79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9999864322  2345577889999999999999876543 455554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.25  E-value=1.1e-05  Score=73.45  Aligned_cols=174  Identities=14%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC--CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~--~aDvVIi  102 (256)
                      |||.|+||+|++|++++..|+.+|. ..++.+|.....+....+.+......+..+.+    ..++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999998885 24666775321111111111100111221111    113334454  4899999


Q ss_pred             ecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCCCCchHHH--H--------HHHHHh
Q 025206          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIA--A--------EVFKKA  162 (256)
Q Consensus       103 ~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-~~iiv~tNPvd~~~~i~--~--------~~~~~~  162 (256)
                      +|+....  ......+.+..|+.....+++.+.++.       .. ..+|.+|-. .+.....  -        ..+.+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~E~  158 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEELPLFTET  158 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCccccccccccCCCcccc
Confidence            9986432  112345678899999999999988752       11 245444421 1000000  0        000011


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ..+.+....|.+.....++-..+++..+++..-++ ..|+|.+
T Consensus       159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~  201 (352)
T PRK10084        159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY  201 (352)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence            11334456676655555565666777888776666 4588865

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.23  E-value=1.3e-05  Score=75.13  Aligned_cols=118  Identities=25%  Similarity=0.309  Sum_probs=72.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCcccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~e   92 (256)
                      |||+|||. |++|.++|..|+..|+  +|+++|+++.+  ..++.....                ..+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999998 9999999999999998  99999997321  112221100                112332   346667


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCchHHHHHHHH
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVFK  160 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~~~~i~~~~~~  160 (256)
                      ++++||+||++.+.|..... ..     +...+.+.++.+.++. ++.+++..| -|.+..-.+...+.+
T Consensus        73 ~~~~advvii~vpt~~~~~~-~~-----d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~  136 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG-SP-----DLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILE  136 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC-Cc-----ChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHH
Confidence            88999999999988764321 11     2344555556666554 455555443 455543333333433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.20  E-value=3.4e-05  Score=69.39  Aligned_cols=116  Identities=13%  Similarity=0.079  Sum_probs=72.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhc-ccCCCcEEEEec----CCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~-~~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .++|.|+||+|++|++++..|+.+|+  +|++.+.+... .....+.. .....+++...+    ..++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999998  88887665321 11111111 111112332221    123455678899999


Q ss_pred             EecCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++||..... . ......+..|+.....+.+.+.++.....+|++|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            999854211 1 2234567889998999999887764223455554

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.20  E-value=9.2e-06  Score=72.09  Aligned_cols=164  Identities=17%  Similarity=0.114  Sum_probs=94.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-CCcEEEEecCCccccccCCC-CEEEEecCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGVP  107 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~a-DvVIi~ag~~  107 (256)
                      +|.|+|++||||++++..|+++|+  +|+.+|.........+ .+... ...+..   .....+.++++ |.||++|+..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEccccC
Confidence            599999999999999999999998  9999997632111111 11000 000100   11223455666 9999999876


Q ss_pred             CCCCCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch-H----HHHHHHHHhCCCCCCcEEEEeechHH
Q 025206          108 RKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-P----IAAEVFKKAGTYNEKKLFGVTTLDVV  179 (256)
Q Consensus       108 ~~~g~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~-~----i~~~~~~~~~~~~~~kviG~t~lds~  179 (256)
                      ..++..+   .++...|+...+++++.+.+... ..++..| .....- .    .+++-.  .. ..|..-.|.+.+...
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-~~~v~~s-s~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E  150 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV-KRFVFAS-SVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE  150 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEeC-CCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence            5444322   35788999999999999998332 2444433 222100 0    001100  11 111123455544444


Q ss_pred             HHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          180 RAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +.-...++..+++..-++ ..++|.+
T Consensus       151 ~~~~~~~~~~~~~~~ilR~~~vyGp~  176 (314)
T COG0451         151 QLLRAYARLYGLPVVILRPFNVYGPG  176 (314)
T ss_pred             HHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            444444455678888888 5699865

>PLN02778 3,5-epimerase/4-reductase

Probab=98.19  E-value=3.3e-05  Score=69.34  Aligned_cols=90  Identities=17%  Similarity=0.125  Sum_probs=63.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc--CCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~aDvVIi~a  104 (256)
                      ..|||.|+||+||+|++++..|..+|+  +|++...+..     |..               .+..++  .++|+||++|
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~-----~~~---------------~v~~~l~~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLE-----NRA---------------SLEADIDAVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccC-----CHH---------------HHHHHHHhcCCCEEEECC
Confidence            347999999999999999999999998  8775432210     000               001112  2689999999


Q ss_pred             CCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206          105 GVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (256)
Q Consensus       105 g~~~~~g-----~~r~d~~~~N~~i~~~i~~~i~~~~p~  138 (256)
                      +....+.     .+..+.+..|+.....+++.+++.+..
T Consensus        66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8643221     245677889999999999999988643

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.19  E-value=4.9e-06  Score=74.51  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~  106 (256)
                      |||.|+||+||+|++++..|..+|   +|+.+|.... ....|+.+            ...+.++++  ++|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999998887   5777776421 00112221            112334455  58999999976


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ....  ..+.......|+.....+++.+.+.+.  .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            4321  123344457899999999999988753  455444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.18  E-value=1.8e-05  Score=67.24  Aligned_cols=93  Identities=24%  Similarity=0.335  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ||+++|+|+ |.+|+.++..+...|+  ||.+-..+..+   ..+..+.-     .+..   . +.++|.+.||+||.+.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~-----~i~~---~-~~~dA~~~aDVVvLAV   68 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGP-----LITG---G-SNEDAAALADVVVLAV   68 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhcc-----cccc---C-ChHHHHhcCCEEEEec
Confidence            578999997 9999999999999999  99988665322   22222221     2322   2 3367999999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                        |              .+.+.++.+.+...-.+-++|-.|||.
T Consensus        69 --P--------------~~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          69 --P--------------FEAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             --c--------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence              2              223445555555544466888899995

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.18  E-value=1.7e-05  Score=71.51  Aligned_cols=100  Identities=21%  Similarity=0.363  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhccc------CCCcEEEEecCCccccccCCCCE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN------TRSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~------~~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      ||||+|||+ |.+|+.++..|+..|+  +|.++|.++..  ....+..+..      .+..+..   ..++.+.+++||+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            479999998 9999999999999998  99999987321  1111100000      0111222   2355567889999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      ||++...                ..+.++++.+..+. |+.++|..+|.++
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            9999531                12344555565554 6778888877544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.17  E-value=1.2e-05  Score=75.57  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQ   89 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d   89 (256)
                      |+++||+|||. |++|.++|..|+..|+  +|+.+|+++.+-.  .+.....                ...+..   ++ 
T Consensus         1 m~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~--~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~-   71 (415)
T PRK11064          1 MSFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVD--TINRGEIHIVEPDLDMVVKTAVEGGYLRA---TT-   71 (415)
T ss_pred             CCccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHCCCCCcCCCCHHHHHHHHhhcCceee---ec-
Confidence            34679999998 9999999999999998  9999999842211  1221110                011211   22 


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCCc
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST  151 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~~  151 (256)
                         .+++||+||++.++|.++.. ..     ++..+.+.++.|.++. ++.++|.- |-|....
T Consensus        72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt  126 (415)
T PRK11064         72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT  126 (415)
T ss_pred             ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence               24689999999988754321 22     2344556666676665 44555444 4566643

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.17  E-value=4.7e-05  Score=68.07  Aligned_cols=115  Identities=11%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-----CCcEEEE-ecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAGY-MGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-----~~~v~~~-~~t~d~~eal~~aDvVIi  102 (256)
                      |||+|+|+ |.+|..++..|...|+  +|.+++. ...  ...+.+...     ....... ...++..+..+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKR--AKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHH--HHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999998 9999999999999998  9999997 311  111221110     0011000 002243445689999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      +...+                .+.++++.+..+. ++..|+.+.|.++..     +.++..  +|++++++
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~-----~~l~~~--~~~~~v~~  122 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQL-----EQLEPY--FGRERVLG  122 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChH-----HHHHHh--CCcccEEE
Confidence            85322                1234455555543 567788888998731     233333  67777774

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.16  E-value=2.2e-05  Score=64.58  Aligned_cols=93  Identities=28%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEEecCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi~ag~  106 (256)
                      |+|+||+|++|+.++..|+.+|+  +|+++-+++.+.  .+      ...++...++    .++.++++++|.||+++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999997  999998764321  11      1234433322    2456789999999999876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.+      +     ...++.+++.+++.+.. .++++|
T Consensus        71 ~~~------~-----~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK------D-----VDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT------H-----HHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc------c-----ccccccccccccccccc-cceeee
Confidence            543      1     56678888888887644 444444

...

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.16  E-value=4.9e-05  Score=68.34  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc-cCCCcEEEEec----CCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .++|.|+||+|++|++++..|+..|+  +|++...+... .....+... .....++.+.+    ...+.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            35899999999999999999999998  88866544211 111222111 11112333221    123456678999999


Q ss_pred             EecCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++|+..... .....+++..|+.....+++.+.+...-..+|.+|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S  127 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS  127 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            999853211 11223457778999999999887653112455444

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.15  E-value=1.6e-05  Score=77.21  Aligned_cols=115  Identities=19%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhc-----cc--CCCcEEEEecC----Ccccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-----IN--TRSEVAGYMGN----DQLGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~-----~~--~~~~v~~~~~t----~d~~eal   94 (256)
                      .+.|.|+||+|++|..++..|+..|+  +|++++++.  +......+.+     ..  ...++..+.++    .++.+++
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            35799999999999999999999998  999998873  2211112211     00  00122222211    2345568


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .++|+||+++|.......+....+..|......+++.+.+.+.. .||++|
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            89999999998653321122234556777788888888776544 455554

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.14  E-value=5.2e-05  Score=67.64  Aligned_cols=100  Identities=20%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC---CCcEEEE-ecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAGY-MGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~---~~~v~~~-~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++|.+...  ...+.....   ....... ....+..+ ++++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAH--LDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHH--HHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            58999998 9999999999999998  99999985311  111111111   0011100 01233333 48999999995


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~  150 (256)
                      ...                -+.++++.+..+- ++..|+...|.++.
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            321                1234455555443 66788889999874

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.14  E-value=8.7e-06  Score=71.58  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~  110 (256)
                      |.|+||+|++|++++..|+..|+  +|+.++++......  +...    .+....+ ..+.++++++|+||++|+.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999999998  99999986321100  0000    0111111 23356789999999999875432


Q ss_pred             C-C---CHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206          111 G-M---TRDDLFNINAGIVKDLCSAIAKYCP  137 (256)
Q Consensus       111 g-~---~r~d~~~~N~~i~~~i~~~i~~~~p  137 (256)
                      + .   ...++...|+...+.+++.+.++..
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            2 1   2345667789999999999988764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02583 cinnamoyl-CoA reductase

Probab=98.13  E-value=5.8e-05  Score=67.44  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch----hHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~----g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      ++|.|+||+|++|++++..|+.+|+  +|++++.+...    ....++...  ..+++.+.+    ..++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999998  99988764211    111222110  112332221    12345688999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++.++.+........+.+..|+.....+.+.+.+...-..+|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            987754432212235678889999999999988763112455444

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.13  E-value=3.3e-05  Score=69.77  Aligned_cols=113  Identities=20%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C-chhHHHHHhcccCCCcEEEEecC-C---ccccccC--CCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N-TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~--~aDvV  100 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+++|.. + .......+.+.. ...+..+.++ +   .+.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999999999998  99999864 1 111111121110 0011111111 1   2233444  68999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++|+.....  .....+.+..|+.....+++.+++.... .+|.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998764321  1234567888999999999998877533 454444

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.13  E-value=4.1e-05  Score=69.94  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEecC----CccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvV  100 (256)
                      ..|||.|+||+|++|++++..|+++|.  +|++++.+....  ...++..   ...++.+.++    ..+.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            457999999999999999999999998  899887653211  1112211   1123322211    1244567889999


Q ss_pred             EEecCCCCCC---C-CCHHH-----HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch--------HHHHHH----H
Q 025206          101 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F  159 (256)
Q Consensus       101 Ii~ag~~~~~---g-~~r~d-----~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~--------~i~~~~----~  159 (256)
                      |++|+.....   . .+..+     .+..|+.....+++.+.++..-..+|++|.-.-...        ..+.+-    .
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864321   1 12222     233345777888888877642224555543110000        000000    0


Q ss_pred             HH-hCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          160 KK-AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       160 ~~-~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      .. ....++...+|.+.+...++-...++..+++..-++ ..|+|.+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence            00 000112224555555555555566777787766666 4577854

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.13  E-value=2.5e-05  Score=72.19  Aligned_cols=105  Identities=16%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCC-----ccEEEEEeCCCc---hhHHHHHhcc--c--------CCCcEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGHI--N--------TRSEVA   82 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~-----~~eV~LiD~~~~---~g~~~dl~~~--~--------~~~~v~   82 (256)
                      |-+.+.+++||+|||+ |.-|+++|..|..++.     ..+|.|+..++.   +..+.++++.  .        ++..+.
T Consensus         4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~   82 (365)
T PTZ00345          4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV   82 (365)
T ss_pred             hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE
Confidence            5556667789999998 9999999999998861     128999977642   1233444421  1        123344


Q ss_pred             EEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 025206           83 GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK--YC-PNAIVNMIS  145 (256)
Q Consensus        83 ~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~--~~-p~~~iiv~t  145 (256)
                      .   ++|+.+++++||+||++..                ...+++++++++.  +- ++.++|.++
T Consensus        83 ~---tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         83 A---VSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             E---ecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence            3   4577789999999999842                2335566666665  32 344555554

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.13  E-value=3.8e-05  Score=69.91  Aligned_cols=97  Identities=25%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-------------CCcEEEEecCCcccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-------------RSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-------------~~~v~~~~~t~d~~eal   94 (256)
                      +|||+|||+ |.+|..++..|...|+  +|.++|.++..   ..+.....             +.++.   .+++. +++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~-~~~   71 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIA---FSTDP-AAL   71 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeE---eccCh-hhc
Confidence            368999998 9999999999999998  99999975311   11111110             00111   13343 567


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~  150 (256)
                      +++|+||++...+.                ..++++.+.... ++.+++..+|..+.
T Consensus        72 ~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         72 ATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             cCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence            89999999964321                123344555544 66778778898773

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.11  E-value=7.8e-06  Score=60.61  Aligned_cols=94  Identities=22%  Similarity=0.324  Sum_probs=61.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEE-eCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~-~~eV~Li-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      ||+|||+ |.+|++++..|...|. ..+|.++ +.+..  ...++.+.. .  ....  ..+..++++++|+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999998 9999999999999982 2388866 77632  222332211 1  1211  2244678899999999952  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                        |            ..+.++++.+....++.++|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            1245666666555578888888876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.10  E-value=2.1e-05  Score=71.49  Aligned_cols=115  Identities=10%  Similarity=0.014  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhc-c--cCCCcEEEEecC----CccccccCC--
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH-I--NTRSEVAGYMGN----DQLGQALED--   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~-~--~~~~~v~~~~~t----~d~~eal~~--   96 (256)
                      ++|.|+||+|++|++++..|+..|+  +|+++|....   ......+.. .  .....++...++    ..+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  9999987631   111111110 0  001112222211    123445564  


Q ss_pred             CCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC-CC-cEEEEec
Q 025206           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC-PN-AIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~-p~-~~iiv~t  145 (256)
                      .|+||++|+......  ......+..|+.....+++.+.+.+ .. ..++.+|
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~S  131 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQAS  131 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEec
Confidence            699999998643211  1233445667778888999888765 22 2454443

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.06  E-value=1.5e-05  Score=70.24  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCC--CEEEEecCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP  107 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a--DvVIi~ag~~  107 (256)
                      ||.|+||+|++|++++..|...|+  +|++++...     .|+.+            ..++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999998  999987641     22222            11334456655  9999999864


Q ss_pred             CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       108 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ....  ......+..|+.....+++.+.+...  .+|++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23455677888889999998877653  455554

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.06  E-value=6.7e-05  Score=74.53  Aligned_cols=173  Identities=14%  Similarity=0.040  Sum_probs=94.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccccc--CCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--EDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~~aDvV  100 (256)
                      +++||.|+||+||||++++..|+.++...+|+.+|..........+........++...++ .|   +.+.+  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            4579999999999999999999987432389999864211111111110001123322221 11   11222  689999


Q ss_pred             EEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHH-----H--HHHhCCCCCCcEE
Q 025206          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-----V--FKKAGTYNEKKLF  171 (256)
Q Consensus       101 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~-----~--~~~~~~~~~~kvi  171 (256)
                      |++|+......  ....++...|+.....+++.+++.+.-..+|.+|. ..    +...     .  ........|....
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS-~~----vyg~~~~~~~~~~~E~~~~~p~~~Y  159 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST-DE----VYGETDEDADVGNHEASQLLPTNPY  159 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc-hH----HhCCCccccccCccccCCCCCCCCc
Confidence            99998653221  23345678899999999999988763335555553 10    0000     0  0000001122334


Q ss_pred             EEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      |.+.+...++-...++..+++..-++ ..|+|.+
T Consensus       160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~  193 (668)
T PLN02260        160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN  193 (668)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence            44444444444444555677666666 4577765

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.05  E-value=8.2e-06  Score=72.11  Aligned_cols=119  Identities=15%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      .........||+|+||+|||||+++..|+..|+  +|+..|.... +....++|.......+... .......+..+|-|
T Consensus        20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~I   95 (350)
T KOG1429|consen   20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQI   95 (350)
T ss_pred             hcccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhh
Confidence            333444568999999999999999999999998  9999998632 2222333332211222111 11223467899999


Q ss_pred             EEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++.|.....++  .+..+....|.-.+.......++.+  +.++.+|
T Consensus        96 yhLAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS  140 (350)
T KOG1429|consen   96 YHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS  140 (350)
T ss_pred             hhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence            99886543332  2333333344333344444444443  4555554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.04  E-value=2.9e-05  Score=70.03  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=58.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +.|||+|||+ |.+|.+++..|...|+  +|.++|++..                      .++.++++++|+||++.. 
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-   56 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-   56 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence            3579999998 9999999999999998  9999998631                      133467789999999852 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tN  146 (256)
                                     ...++++++.+..+  .++.+++..|+
T Consensus        57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         57 ---------------MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                           12345555666543  46777877776

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.02  E-value=6.6e-05  Score=74.03  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHc--CCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc--------cccccCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ--------LGQALEDS   97 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~--~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d--------~~eal~~a   97 (256)
                      |||.|+||+|++|++++..|+.  .+.  +|++++.+.......++.......+++...++ .+        ..+.++++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence            5899999999999999999984  566  99999986322221222111000122222211 01        11223899


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+||++|+.... .....+....|+.....+++.+.+.... .++.+|
T Consensus        79 D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~S  124 (657)
T PRK07201         79 DHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAA-TFHHVS  124 (657)
T ss_pred             CEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEe
Confidence            999999986432 2344556778999999999998876543 344444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.01  E-value=2.5e-05  Score=63.95  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |+||++||. |.+|+.++..|+..|+  +|..||+++  ....++.+..    .+.   ..++.+++++||+|+.+... 
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~~-   67 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVPD-   67 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SSS-
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeeccc-
Confidence            579999998 9999999999999999  999999863  2233344322    232   23567889999999998521 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH--HHHhCCCcEEEEecCCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSA--IAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~--i~~~~p~~~iiv~tNPvd  149 (256)
                                    -+.++++...  +....+.+.+++-++.++
T Consensus        68 --------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   68 --------------DDAVEAVLFGENILAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             --------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred             --------------chhhhhhhhhhHHhhccccceEEEecCCcc
Confidence                          2345566665  555554444444444443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.99  E-value=0.0002  Score=66.47  Aligned_cols=149  Identities=23%  Similarity=0.170  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCC-cEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~-~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+||.|||+ |+||+.+|..|++++. .+|++.|+...+ ..+.+..+..... .+.. .+...+.+++++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence            579999998 9999999999999985 599999987321 1222222111110 1111 012245678899999999975


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE---e---echHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---T---TLDVV  179 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~---t---~lds~  179 (256)
                      ...            +.    .+++++.+.+-+  ++-.|+-.+.. +-..+..++.|      +.++   +   -++..
T Consensus        78 ~~~------------~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~nv  132 (389)
T COG1748          78 PFV------------DL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITNV  132 (389)
T ss_pred             chh------------hH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHHH
Confidence            331            22    445555555543  45566644432 23334444443      3334   1   13333


Q ss_pred             HHHHHHHHHcCCCCCceeEEEE--eCCC
Q 025206          180 RAKTFYAGKANVNVAEVNVPVV--GGHA  205 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~--G~Hg  205 (256)
                      -..+. ++++.-..++++.++.  |+||
T Consensus       133 ~a~~a-~~~~~~~i~si~iy~g~~g~~~  159 (389)
T COG1748         133 LAAYA-AKELFDEIESIDIYVGGLGEHG  159 (389)
T ss_pred             HHHHH-HHHhhccccEEEEEEecCCCCC
Confidence            33444 4444435667766654  4896

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.99  E-value=5.4e-05  Score=70.59  Aligned_cols=117  Identities=20%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hh--HHHHHhcccCCCcEEEEec----CCcccc
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG--VAADVGHINTRSEVAGYMG----NDQLGQ   92 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g--~~~dl~~~~~~~~v~~~~~----t~d~~e   92 (256)
                      |-+.+.+.+||.|+||+|++|+.++..|+.+|+  +|++++.+..  ..  ...++....  ..++...+    ..++.+
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~  128 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADSLRK  128 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhc--CCceEEEeeCCCHHHHHH
Confidence            666666778999999999999999999999998  9999987631  10  011111100  01222211    123444


Q ss_pred             ccC----CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           93 ALE----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        93 al~----~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +++    ++|+||++++.+...   ..+.+..|......+++.+++.+.. .++++|
T Consensus       129 ~~~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        129 VLFSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             HHHHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            555    599999988753211   1233456777778888888777644 344454

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.98  E-value=4.9e-05  Score=69.06  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--------cC--CCcEEEEecCCccccccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NT--RSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--------~~--~~~v~~~~~t~d~~eal~~   96 (256)
                      .+|||+|||+ |.+|..++..|+..|+  +|.++|.+....  .++...        ..  +..+..   +.++.+++++
T Consensus         3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~   74 (328)
T PRK14618          3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFA--AALAAERENREYLPGVALPAELYP---TADPEEALAG   74 (328)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcC
Confidence            3679999998 9999999999999998  999999863211  112211        10  111222   3456677899


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      +|+||++....                .++++++.+   .|..+++.++|.++
T Consensus        75 aD~Vi~~v~~~----------------~~~~v~~~l---~~~~~vi~~~~Gi~  108 (328)
T PRK14618         75 ADFAVVAVPSK----------------ALRETLAGL---PRALGYVSCAKGLA  108 (328)
T ss_pred             CCEEEEECchH----------------HHHHHHHhc---CcCCEEEEEeeccc
Confidence            99999985211                123333332   35667777888643

>PRK06194 hypothetical protein; Provisional

Probab=97.98  E-value=0.00016  Score=63.66  Aligned_cols=159  Identities=15%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|++|++++..|+.+|.  +|+++|.+.  +.....++....  .++..+.++ +   ++.++++     
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999863  222233333211  123222211 1   2222222     


Q ss_pred             --CCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCC-----cEEEEecCCCCCchHHHHHH
Q 025206           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~-----~~iiv~tNPvd~~~~i~~~~  158 (256)
                        ..|+||++||.....   ..+.   ...+..|+...    +.+.+.+.+.+..     +.++++|.....        
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------  152 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------  152 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc--------
Confidence              479999999874321   1121   22345555443    4444445555432     566666543221        


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEE
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (256)
                         .+ .+..-.++.+..-...+...++..++.....+++..+
T Consensus       153 ---~~-~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v  191 (287)
T PRK06194        153 ---LA-PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL  191 (287)
T ss_pred             ---cC-CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence               11 2333334443333334555566666655555654433

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.98  E-value=5.6e-05  Score=69.52  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHHHHhcccCCCcEEEEe----cCCccccccCCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM----GNDQLGQALEDS   97 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~a   97 (256)
                      .++.++.|+||+||+|.+++..|.+++...||.++|....    ..+..++ +   ...++...    ...++..++.++
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~---~~~v~~~~~D~~~~~~i~~a~~~~   77 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-R---SGRVTVILGDLLDANSISNAFQGA   77 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-c---CCceeEEecchhhhhhhhhhccCc
Confidence            3567899999999999999999999986569999998742    1111111 1   11222221    123566789999


Q ss_pred             CEEEEecCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           98 DVVIIPAGVPR-KPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~-~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       .||++|..+. .-.+ .+......|+...+.+.+.+.+.+-+ .+|..|+
T Consensus        78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs  126 (361)
T KOG1430|consen   78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSS  126 (361)
T ss_pred             -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecC
Confidence             7777654432 2223 36666788999999999999998854 4555554

>PLN02240 UDP-glucose 4-epimerase

Probab=97.97  E-value=0.00011  Score=66.81  Aligned_cols=116  Identities=19%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhccc--CCCcEEEEec----CCccccccC--C
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN--TRSEVAGYMG----NDQLGQALE--D   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~--~~~~v~~~~~----t~d~~eal~--~   96 (256)
                      ..+||.|+||+|++|++++..|+..|+  +|+++|....  ......+.+..  ....++...+    ..++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            346999999999999999999999997  9999986421  11111111110  0111222211    112333343  6


Q ss_pred             CCEEEEecCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~-~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+||++|+.... .. ....+.+..|+.....+++.+.+.... .+|.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            8999999986421 11 234567888999999999988776543 345454

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.97  E-value=5.7e-05  Score=67.46  Aligned_cols=108  Identities=13%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCc-cccc-----cCCCCEEEEec
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA  104 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~ea-----l~~aDvVIi~a  104 (256)
                      |.|+||+|++|++++..|+..|+ ..+.++|..........+.+.... ...   ...+ +.+.     +.++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDIA-DYM---DKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhhh-hhh---hHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999999886 246667765211110111111100 000   0001 1112     23799999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.+.....+....+..|+....++++.+.+.+.  .+|..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            854333334445678899999999999887653  344444

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.95  E-value=5.7e-05  Score=68.56  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             cHHHHHHHHHcCCCccEEEEEeCCCc--h--------h--HHHH----Hh-ccc--------CCCcEEEEecCCcccccc
Q 025206           40 IGQPLALLMKLNPLVSRLALYDIANT--P--------G--VAAD----VG-HIN--------TRSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        40 VG~~la~~l~~~~~~~eV~LiD~~~~--~--------g--~~~d----l~-~~~--------~~~~v~~~~~t~d~~eal   94 (256)
                      +|..+|..++..|+  +|+|+|++..  .        +  ....    +. +..        ...+++... +.+.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            47889999999999  9999999841  0        1  0111    10 100        012454321 22356789


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++||+||.+.              .+|.++.+++..++.+.+ |++++  .||.+...   .+++.....  .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~~--~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHVA--HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhcC--CcccEEEE
Confidence            9999999984              345777888888999998 56655  88877752   355655553  56889998

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.95  E-value=0.00014  Score=68.67  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=66.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC------------CcEEEEecCCcccccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR------------SEVAGYMGNDQLGQAL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~------------~~v~~~~~t~d~~eal   94 (256)
                      .+|||+|||. |+||.++|..|+. ++  +|+.||+++.  .+..|.....+            ..+..   +++ .+++
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~-~~~~   74 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSE-IEKI   74 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeC-HHHH
Confidence            4589999998 9999999999876 56  9999999842  12233322110            11222   334 3478


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCC
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~  150 (256)
                      ++||++|++.++|.+... ..|     +..+....+.|.++. +..++|+- |-|...
T Consensus        75 ~~advvii~Vptp~~~~~-~~d-----l~~v~~a~~~i~~~l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         75 KECNFYIITVPTPINTYK-QPD-----LTPLIKASETVGTVLNRGDIVVYESTVYPGC  126 (425)
T ss_pred             cCCCEEEEEcCCCCCCCC-Ccc-----hHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence            999999999999864321 111     333444455555555 34444443 456654

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.94  E-value=3.1e-05  Score=65.78  Aligned_cols=163  Identities=18%  Similarity=0.159  Sum_probs=93.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCC--CEEEEec
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIPA  104 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~a--DvVIi~a  104 (256)
                      |.|+||+|++|+.++..|..+|.  +|+.+...+..........     .++.+.    ...++.+.+++.  |.||++|
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKANIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-----eEEEEEeeccccccccccccccCceEEEEee
Confidence            78999999999999999999998  7665554432221111111     011111    112344566666  9999999


Q ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH--HHHHHhCCCCCCcEEEEeechHHH
Q 025206          105 GVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA--EVFKKAGTYNEKKLFGVTTLDVVR  180 (256)
Q Consensus       105 g~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~--~~~~~~~~~~~~kviG~t~lds~R  180 (256)
                      +.+.  .......+.+..|+...+.+.+.+.+... ..+|.++. ...  +-..  ..+.+...+.+..-.|.+.....+
T Consensus        74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~  149 (236)
T PF01370_consen   74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEE  149 (236)
T ss_dssp             SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccc
Confidence            8653  11134567788899999999999999987 35555543 221  0000  000000000011112233333344


Q ss_pred             HHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          181 AKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +...+.++.+++...++ ..++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  150 LLRDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHHHTSEEEEEEESEEESTT
T ss_pred             ccccccccccccccccccccccccc
Confidence            55556666688888888 5688976

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.93  E-value=0.00013  Score=66.04  Aligned_cols=118  Identities=14%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc---CCCcEEE--EecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---TRSEVAG--YMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~---~~~~v~~--~~~t~d~~eal~~aDvVI  101 (256)
                      .+|||+|+|+ |.+|..++..|...|+  +|.+++.+..+  +.......   .......  ....++ .++...+|+||
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vi   77 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVL   77 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEE
Confidence            4579999998 9999999999999998  99999886421  11111000   0000100  000112 23567899999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++.-..+                ..++++.+.... |++.++...|-++.     .+.+...  +|+++|++-
T Consensus        78 lavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~-----~e~l~~~--~~~~~v~~g  127 (313)
T PRK06249         78 VGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGV-----EEQLREI--LPAEHLLGG  127 (313)
T ss_pred             EEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHHH--CCCCcEEEE
Confidence            9953221                123444444433 78888888998873     2334433  677787764

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.93  E-value=8.2e-05  Score=67.48  Aligned_cols=109  Identities=15%  Similarity=0.042  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcc--cCCCcEEEEec----CCccccccCC-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYMG----NDQLGQALED-   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~--~~~~~v~~~~~----t~d~~eal~~-   96 (256)
                      +.++|.|+||+|++|++++..|+.+|.  +|+++|....   ......+...  .....+....+    ..++.+++++ 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            346899999999999999999999998  9999987521   1111111100  00111222221    1123344553 


Q ss_pred             -CCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206           97 -SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (256)
Q Consensus        97 -aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p  137 (256)
                       .|+||++|+......  ......+..|+.....+++.+.++..
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence             699999998643211  22334456788888899999888774

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.92  E-value=8e-05  Score=68.34  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC------CccEEEEEeCCC---chhHHHHHh--ccc--------CCCcEEEEecCCcc
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL   90 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~------~~~eV~LiD~~~---~~g~~~dl~--~~~--------~~~~v~~~~~t~d~   90 (256)
                      ||+|||+ |..|.++|..|..++      +..+|.|+.+++   -......++  |..        .+..++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999998 999999999999887      112999998742   112222222  211        1223333   4588


Q ss_pred             ccccCCCCEEEEec
Q 025206           91 GQALEDSDVVIIPA  104 (256)
Q Consensus        91 ~eal~~aDvVIi~a  104 (256)
                      ++++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            88999999999984

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.92  E-value=9.4e-05  Score=67.80  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc-----------CCCcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----------TRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~-----------~~~~v~~~~~t~d~~eal~   95 (256)
                      .+|||+|+|+ |.+|..++..|...+   +++++..++.  ...++.+..           .+..+..   ++|+.++++
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~   76 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN   76 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence            4689999998 999999999999887   4677776532  122222110           1112222   456667899


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      ++|+||++..                ...++++++++..+- ++..+|.++|-++
T Consensus        77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence            9999999852                223566666666654 6677888888655

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.90  E-value=9.5e-05  Score=67.11  Aligned_cols=97  Identities=14%  Similarity=0.380  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc----cc------CCCcEEEEecCCcccccc-CCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH----IN------TRSEVAGYMGNDQLGQAL-EDS   97 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~----~~------~~~~v~~~~~t~d~~eal-~~a   97 (256)
                      |||+|||+ |.+|..++..|...|+  +|.+++.+..  ....+..    ..      .+..++.   ++++.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            58999998 9999999999999998  9999998632  1122221    11      1112332   34555666 589


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVN  149 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~-~p~~~iiv~tNPvd  149 (256)
                      |+||++.-                ...+.++++++.. + .++..++..+|-.+
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            99999852                1224556666655 3 36667777888653

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.84  E-value=0.00012  Score=65.21  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccc----cCCCCEEEEecCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV  106 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ea----l~~aDvVIi~ag~  106 (256)
                      |.|+||+|++|++++..|..+|+ .+|+++|..........+........+..   ...++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999999884 26888886532111111111000000110   0111111    2589999999986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.....+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4332234456678899999999999887754  355555

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK12320 hypothetical protein; Provisional

Probab=97.81  E-value=8.2e-05  Score=74.04  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec---CCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~eal~~aDvVIi~ag  105 (256)
                      |||.|+||+||+|++++..|+.+|+  +|+.+|.....     ..+.    .++...+   ...+.+++.++|+||++|+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~----~ve~v~~Dl~d~~l~~al~~~D~VIHLAa   69 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDP----RVDYVCASLRNPVLQELAGEADAVIHLAP   69 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccC----CceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence            5899999999999999999999998  99999975211     1110    1111110   1123456789999999997


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...  ..    -...|+....++++.+++.+.  .+|.+|
T Consensus        70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            531  11    123578888889998887764  455555

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.81  E-value=0.00013  Score=57.59  Aligned_cols=101  Identities=23%  Similarity=0.311  Sum_probs=58.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-... ......+.+.. + ...    ..++.+.++++|++|++.. 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~-~-~~~----~~~~~~~~~~aDlv~iavp-   77 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI-G-AGA----ILDLEEILRDADLVFIAVP-   77 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC---T-T---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc-c-ccc----ccccccccccCCEEEEEec-
Confidence            4579999998 9999999999999998  777664321 11222233211 1 111    1244578899999999952 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEecC--CCCCchH
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMISN--PVNSTVP  153 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~-p~~~iiv~tN--Pvd~~~~  153 (256)
                          +           ..+.+++++|..+  . |+.+++-.|-  ++++|-+
T Consensus        78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p  114 (127)
T PF10727_consen   78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP  114 (127)
T ss_dssp             ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred             ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence                1           1256788888876  2 5667666664  5665544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.80  E-value=0.00023  Score=65.77  Aligned_cols=119  Identities=20%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc------hhH------HHH--HhcccCCCcEEEEecCCcccccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGV------AAD--VGHINTRSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~------~g~------~~d--l~~~~~~~~v~~~~~t~d~~eal   94 (256)
                      ++|+|||- |+||.++|..++.+|.  +|+-+|+++.      .|+      ..|  +.......+++.   |+|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence            79999998 9999999999999999  9999999831      111      011  111111224553   4553 567


Q ss_pred             CCCCEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCc--EEEEecCCCCCchHHHHHHHHH
Q 025206           95 EDSDVVIIPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNA--IVNMISNPVNSTVPIAAEVFKK  161 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~--~iiv~tNPvd~~~~i~~~~~~~  161 (256)
                      +.||++|+|..+|-+.. +..       +..+.+-++.|.++-..+  +++=.|-|...+=-++--+++.
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pD-------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPD-------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCC-------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            89999999998886543 222       344555666666665433  3333356776544444334444

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.78  E-value=0.00023  Score=66.09  Aligned_cols=60  Identities=20%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |-......+||+|||+.|.+|.+++..|...|+  +|.++|.+..                      .+..+++++||+|
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlV  146 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMV  146 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEE
Confidence            433333457999999559999999999999998  9999997421                      0223567899999


Q ss_pred             EEec
Q 025206          101 IIPA  104 (256)
Q Consensus       101 Ii~a  104 (256)
                      |++.
T Consensus       147 ilav  150 (374)
T PRK11199        147 IVSV  150 (374)
T ss_pred             EEeC
Confidence            9995

>PRK05865 hypothetical protein; Provisional

Probab=97.76  E-value=5.9e-05  Score=76.58  Aligned_cols=104  Identities=18%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+++|.+....    +. .... -+..- ....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~-~~v~-~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WP-SSAD-FIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----cc-cCce-EEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999998  999998753110    00 0000 01110 01124456788999999999753


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ..       ....|+.....+++.+.+.+.. .+|++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3466888888888888877543 566666654

>PLN02686 cinnamoyl-CoA reductase

Probab=97.74  E-value=0.00011  Score=67.93  Aligned_cols=117  Identities=11%  Similarity=0.116  Sum_probs=70.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc---c-CCCcEEEEec----CCccccccCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI---N-TRSEVAGYMG----NDQLGQALED   96 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~---~-~~~~v~~~~~----t~d~~eal~~   96 (256)
                      .++++|.|+||+|++|++++..|+.+|+  +|+++..+... ....++...   . ....+..+.+    ..++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            3567999999999999999999999998  88876554211 111122110   0 0011222211    1234567889


Q ss_pred             CCEEEEecCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206           97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~--~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t  145 (256)
                      +|.||++++.....+.  ....+...|.....++++.+.+. +.. .+|.+|
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~S  179 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTS  179 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEec
Confidence            9999999875422221  12344566888889999998875 333 344444

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.72  E-value=0.00035  Score=62.78  Aligned_cols=94  Identities=20%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+|||. |.+|.+++..|...|+  +|.++|+++..  ...+.+....    ......++.+.++++|+|+++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~~----~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRTT----GVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCCc----ccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            58999998 9999999999999998  99999987422  2223321111    011011334456789999998421  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                                    ..++++++.+.... ++.++|..||.
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~   95 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNS   95 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence                          12444555555554 66788887764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.71  E-value=8.3e-05  Score=57.88  Aligned_cols=72  Identities=24%  Similarity=0.330  Sum_probs=45.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc--CCCcEEEEecCCccccccCCCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ||+|+||+|++|+.+...|..++.+.-+.+++.....|....-.+..  ....+...  ..+ .+.+.++|+||++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DAD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecc-hhHhhcCCEEEecC
Confidence            79999999999999999999987776677777654223222222111  11123221  123 35679999999995

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.70  E-value=0.00043  Score=59.83  Aligned_cols=115  Identities=18%  Similarity=0.264  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|++|++++..|+++|.  +|++++.++  ......++.+..  .++..+..+ ++   +.++       
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999874  222233333321  122222211 11   1112       


Q ss_pred             cCCCCEEEEecCCCCCC---C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKP---G---MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ....|+||+++|.....   .   +...+.+..|+..    .+.+.+.+.+..+.+.++++|
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            23589999999864211   1   1123344556555    566666663334445666665

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.70  E-value=0.00087  Score=57.46  Aligned_cols=114  Identities=18%  Similarity=0.284  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----Cccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++++.+..  .....++.+   ..++..+.++    .++..+       
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998742  222233332   1112222211    112222       


Q ss_pred             cCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|+||+++|......    .+   ..+.+..|+.-    .+.+.+.+.+.. .+.++++|.
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  141 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVAS  141 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            236799999998642211    11   12345556544    444444444333 345555553

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.68  E-value=0.00031  Score=62.46  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||. |.+|.+++..|...|+  +|.++|.+....  ..+.+...   +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~--~~a~~~g~---~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTC--ERAIERGL---VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999998 9999999999999998  999999873211  11111110   111  12232 4689999999995

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00053  Score=58.94  Aligned_cols=116  Identities=16%  Similarity=0.241  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      +.+++.|+||+|++|.+++..|+.+|+  +|++++.+..   .....++....  .++..+..+ ++   +.+.      
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8988877531   11222232211  112222111 11   1111      


Q ss_pred             -cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           94 -LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                       +...|+||+++|.......+..+.+..|......+++.+.++. ..+.++++|.
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             2368999999875422211222334556666666677666654 3455666653

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.68  E-value=0.00059  Score=59.15  Aligned_cols=101  Identities=10%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      +++.+||+|||+ |.+|.+++..+...+.  ..++++++.+.. ....++.+..   .+..   +.++.+.++++|+||+
T Consensus         1 ~m~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiVii   72 (245)
T PRK07634          1 MLKKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVL   72 (245)
T ss_pred             CCCCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEE
Confidence            356689999998 9999999998887753  334777775321 1122233211   1222   2355677899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      +...                ...+++++++..+-++.+||.++.-++
T Consensus        73 avp~----------------~~~~~v~~~l~~~~~~~~vis~~~gi~  103 (245)
T PRK07634         73 AMPP----------------SAHEELLAELSPLLSNQLVVTVAAGIG  103 (245)
T ss_pred             ecCH----------------HHHHHHHHHHHhhccCCEEEEECCCCC
Confidence            8421                112444455544434456766666665

>PLN02253 xanthoxin dehydrogenase

Probab=97.67  E-value=0.00096  Score=58.60  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CC---cccccc-----
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQAL-----   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal-----   94 (256)
                      .+.+++.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++..   ..++..+.. -.   ++.+++     
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   90 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVD   90 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  9999998631  122222221   112222211 11   122222     


Q ss_pred             --CCCCEEEEecCCCCCC-C----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCCchHHHHHHHHH
Q 025206           95 --EDSDVVIIPAGVPRKP-G----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKK  161 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd~~~~i~~~~~~~  161 (256)
                        ...|++|++||..... +    .+   ....+..|+.....+.+.+.+.   ...+.+++++.....           
T Consensus        91 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~-----------  159 (280)
T PLN02253         91 KFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA-----------  159 (280)
T ss_pred             HhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc-----------
Confidence              3689999999864321 1    11   2334566655444444433322   134566666543221           


Q ss_pred             hCCCCCCcEEEEeechHHHHHHHHHHHcCC
Q 025206          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (256)
Q Consensus       162 ~~~~~~~kviG~t~lds~R~~~~la~~l~v  191 (256)
                      .+ .+....++.+..-...+-+.++..++-
T Consensus       160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~~  188 (280)
T PLN02253        160 IG-GLGPHAYTGSKHAVLGLTRSVAAELGK  188 (280)
T ss_pred             cc-CCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence            11 122234455433334566667777653

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00024  Score=61.72  Aligned_cols=112  Identities=28%  Similarity=0.312  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCccccc--------c
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQA--------L   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~ea--------l   94 (256)
                      +++.|+||+|.+|..++..|+++|.  +|+++|.+..  .....++..    ..+..+..    ..++.+.        .
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~   75 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG   75 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4699999999999999999999997  9999998632  111111211    11111110    1112222        2


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~---~~p~~~iiv~tN  146 (256)
                      ...|+||++||......   .+   ....+..|+.....+.+.+.+   ..+.+.+++++.
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  136 (260)
T PRK08267         76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS  136 (260)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence            35699999998753211   11   233456676655555444432   234456666654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.65  E-value=0.00042  Score=65.72  Aligned_cols=66  Identities=24%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+||||.|.+|.+++..|...|+  +|.++|.+....  .++....   .+..   +.+..+++++||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence            5899998559999999999999998  899999874221  1111110   1121   235567789999999985

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.65  E-value=0.001  Score=58.82  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEec----CCc-------ccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG----NDQ-------LGQ   92 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~----t~d-------~~e   92 (256)
                      ++++.+.|+||++.+|..+|..|+.+|+  +|+|+.++  ++...+.++++.. ...+..+..    +.+       +.+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~   80 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKE   80 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHh
Confidence            4556899999999999999999999999  99999887  3566667777533 111222211    111       111


Q ss_pred             ccCCCCEEEEecCCCCCCC------CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKPG------MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g------~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .....|+.|..||......      ++..++++-|+-.    .+.+.+.+.+.. .+.||+++.
T Consensus        81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S  143 (265)
T COG0300          81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS  143 (265)
T ss_pred             cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            2236999999999753221      2245667777544    455555555543 456677753

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.64  E-value=3.2e-05  Score=69.07  Aligned_cols=98  Identities=26%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||.|+|++|++|+.+...|..+++  +++.++..+     .|+.+..   .+.      ++-+. .+.|+||++|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence            7999999999999999999998887  888886542     2222211   000      11112 25889999997642


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       109 ~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..  ..+.......|......+++.+.+.+  +.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEee
Confidence            11  12355567788999999999888764  4565555

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.63  E-value=0.00071  Score=58.26  Aligned_cols=115  Identities=15%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----Cccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~ea-------   93 (256)
                      +.++|.|+|++|++|++++..|+.+|.  +|++++.+..  .....++....  .++..+..+    .++.++       
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998732  22223332211  122222211    111122       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..+.|+||+++|......   .+   -.+.+..|+..    .+.+.+.+.+... ..++++|.
T Consensus        79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss  140 (258)
T PRK12429         79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS  140 (258)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            246899999998643211   11   12234445443    5566666655543 35555553

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.63  E-value=0.00046  Score=60.65  Aligned_cols=95  Identities=18%  Similarity=0.293  Sum_probs=60.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEE-eCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~Li-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||++||. |.+|.+++..|+..++  ..+|+++ |.++..  ...+.+..    +..   ..+..+++++||+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKT---AASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEE---eCChHHHHhcCCEEEEEE-
Confidence            68999998 9999999999998875  3478888 765322  22232211    222   224456788999999996 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      .|               ..++++.+.+..+. |+.++|..++...
T Consensus        70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence            22               11344444554444 5667766666655

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.63  E-value=0.00012  Score=64.99  Aligned_cols=94  Identities=13%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCCCCC-
Q 025206           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK-  109 (256)
Q Consensus        33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~~~~-  109 (256)
                      |+||+|+||++++..|+..|+  ++++.....    ..|+.+.            .++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence            899999999999999998887  655553221    1223221            12223333  57999999976321 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       110 --~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                        ......+.+..|......+++.+++.... .+|.+|
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~S  100 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLG  100 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeC
Confidence              12234567888999999999999987644 344443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.62  E-value=0.00072  Score=60.16  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|||+ |.+|.+++..|...+..  .+|+++|.+... ....+.... . .+..   +.+..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~-~-~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY-P-TVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc-C-CeEE---eCCHHHHHhhCCEEEEecC
Confidence            468999998 99999999999888722  389999875321 112222111 1 1221   2344567889999999853


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      .                ..+.++++.+..+- ++..+|.+.|-++
T Consensus        74 p----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         74 P----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             H----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1                22445666665544 4667777788776

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.60  E-value=0.00055  Score=61.66  Aligned_cols=70  Identities=21%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+||+|||+ |.+|.+++..|...|+..+|.++|.+....  .........  ...   ..+..+++++||+||++..
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~--~~a~~~g~~--~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETR--ARARELGLG--DRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHhCCCC--cee---cCCHHHHhcCCCEEEECCC
Confidence            368999998 999999999999888645899999873211  111111110  111   2244567899999999964

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.59  E-value=0.00056  Score=60.13  Aligned_cols=96  Identities=15%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +|||+|||+ |.+|..++..|...+. ..+|.++|.+...  ...+.+..   .+..   ..+..+.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            468999998 9999999999988772 1378999987321  12222210   1121   2244566789999999852 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                                     -..+.++++.+..+. +..|+.++|.+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           122445555555444 457777777665

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.59  E-value=0.00049  Score=62.08  Aligned_cols=114  Identities=13%  Similarity=0.093  Sum_probs=70.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH-HHH----hcccC-----C-CcEEEEecC----------C
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHINT-----R-SEVAGYMGN----------D   88 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~-~dl----~~~~~-----~-~~v~~~~~t----------~   88 (256)
                      +|.|+||+|++|++++..|+.+|...+|+++.+....... ..+    .....     . .++....++          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            5889999999999999999998853478888776321110 111    11000     0 234433322          1


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++.+..+++|+||++|+.... .....++...|+.....+++.+.+..... ++.+|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            223445789999999875421 22344556778888888888887765543 44444

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.58  E-value=0.00096  Score=59.30  Aligned_cols=110  Identities=21%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI  101 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvVI  101 (256)
                      ||.|+||+|++|..++..|..+|.  +|+++|....  ......+.+..   .++.+.++    .++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999998  8988875421  11111111100   12222111    12333343  699999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++||.....  .....+.+..|+.....+++.+.+.+.. .++++|
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s  120 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS  120 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence            999864321  1233455678888888999988876544 344444

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07680 late competence protein ComER; Validated

Probab=97.57  E-value=0.00067  Score=60.07  Aligned_cols=97  Identities=16%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+|||+ |.+|..++..|...+.+  .+|.++|.+...  ...+.+. .. .+..   ..+..+.++++|+||++.. 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~-~~-g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER-YP-GIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH-cC-CeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999998 99999999999888742  479999987321  1222221 11 1222   2244566889999999951 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      |               ..+.++++.+..+- ++.+|+.++|++.
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               11344555555443 5678888898876

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.57  E-value=0.00036  Score=62.28  Aligned_cols=64  Identities=20%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ||+|||. |.+|+.++..|+..|+  +|+++|.+...  ...+.+...    ..   ..+..+++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEecC
Confidence            6999998 9999999999999998  99999987421  222332211    11   2245678899999999953

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00071  Score=59.00  Aligned_cols=107  Identities=14%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccccCCCCE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDV   99 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal~~aDv   99 (256)
                      |.+...+.+++.|+||+|.+|..++..|+.+|.  +|++++.++........ +.. ...+.... ...++.+.+...|+
T Consensus         7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDi   82 (245)
T PRK12367          7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDV   82 (245)
T ss_pred             hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCE
Confidence            555566667899999999999999999999998  99999886421111111 110 00111111 11233455678999


Q ss_pred             EEEecCCCCCCCCC---HHHHHHHHHHHHHHHHHH
Q 025206          100 VIIPAGVPRKPGMT---RDDLFNINAGIVKDLCSA  131 (256)
Q Consensus       100 VIi~ag~~~~~g~~---r~d~~~~N~~i~~~i~~~  131 (256)
                      +|++||.......+   ..+.+..|+.....+++.
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~  117 (245)
T PRK12367         83 LILNHGINPGGRQDPENINKALEINALSSWRLLEL  117 (245)
T ss_pred             EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence            99999864322222   234456675544444443

>PRK06182 short chain dehydrogenase; Validated

Probab=97.56  E-value=0.00063  Score=59.60  Aligned_cols=114  Identities=15%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCcccccc-------CCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQAL-------EDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal-------~~aD   98 (256)
                      +.+++.|+|++|.+|..++..|+.+|.  +|++.+.+...  ..++...... -+..-. ...++.+.+       .+.|
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id   76 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRID   76 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            346899999999999999999999998  99999876321  1122211110 011100 011222223       3789


Q ss_pred             EEEEecCCCCCC---CC---CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           99 VVIIPAGVPRKP---GM---TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~---g~---~r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++|+++|.....   ..   +....+..|..    .++.+.+.+++... +.++++|.
T Consensus        77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            999999864321   11   12334455543    35666666665543 45666653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.56  E-value=0.00045  Score=57.66  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+||||+|.+|+.++..+..+|+  ||+.+=.+..+-.+  ++... -..-.++. .+.+.+++.+-|+||.+.|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~~~~~-i~q~Difd-~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--RQGVT-ILQKDIFD-LTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--cccce-eecccccC-hhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  99999776321110  00000 00001111 2234578999999999987653


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ++.  ..+.   .+....+...++... ...++++..
T Consensus        75 -~~~--~~~~---~k~~~~li~~l~~ag-v~RllVVGG  105 (211)
T COG2910          75 -SDN--DELH---SKSIEALIEALKGAG-VPRLLVVGG  105 (211)
T ss_pred             -CCh--hHHH---HHHHHHHHHHHhhcC-CeeEEEEcC
Confidence             221  1111   233555666665443 446777764

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00056  Score=58.04  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEE-ecCCcccc-------ccCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLGQ-------ALEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~-~~t~d~~e-------al~~a   97 (256)
                      .++|.|+||+|.+|+.++..|+++|.  +|+++|.+..  .....++...... .+..- ....++.+       .+...
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALR-IGGIDLVDPQAARRAVDEVNRQFGRL   83 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCce-EEEeecCCHHHHHHHHHHHHHHhCCc
Confidence            45899999999999999999999998  8999998732  1222233221110 01100 00111112       23368


Q ss_pred             CEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           98 DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      |+||+++|......   .+.   .+.+..|......+++.+.+.   .+...++++|.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            99999988542111   111   233445555555555544322   23446666654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.55  E-value=0.0014  Score=56.86  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccc-------cc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al   94 (256)
                      .+++.|+||+|.+|++++..|+.+|.  +|++++.+..  .....++....  .++..+.++ +|   +.+       ..
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  8999988632  11222222111  122222211 11   111       12


Q ss_pred             CCCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN  146 (256)
                      ...|+||+++|......   .   ...+.++.|+.....+.+.+.++    .+.+.++++|.
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            46899999998632111   1   12334567777777777766554    23456666664

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.54  E-value=0.00037  Score=60.58  Aligned_cols=110  Identities=18%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----Ccccccc-CCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQAL-EDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal-~~aDvV  100 (256)
                      +++||.|+||+|++|+.++..|+.+|+  +|+++..+..... ..+.+ .  ..+....++     .++.+.+ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~-~~~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAK-TSLPQ-D--PSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHH-Hhccc-C--CceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            567999999999999999999999988  8887765421111 11111 0  112222111     1234556 689999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+++|.....+.  .+.+..|......+++.+.+.... .++.+|
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iS  131 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILVS  131 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEEc
Confidence            998875422111  111223444456677777665543 444443

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.0013  Score=56.06  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l   94 (256)
                      .++|.|+||+|.+|+.++..|+.+|.  +|++++++..  .....++...   ..+..+.++ +   ++.+.       +
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999998732  2222333321   122222211 1   11122       2


Q ss_pred             CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tNP  147 (256)
                      ..+|+||+++|.....   ..+.   .+.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            4799999998764321   1122   234555655444444444332  233566666643

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.54  E-value=0.00055  Score=61.14  Aligned_cols=65  Identities=23%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|||. |.+|+.++..|+..|+  +|.++|.+....  ..+....    ...   .+++.+++++||+||++..
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            58999998 9999999999999998  999999874221  1222211    111   2355677899999999953

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.53  E-value=0.00067  Score=62.63  Aligned_cols=68  Identities=21%  Similarity=0.286  Sum_probs=46.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .||+|||. |.+|.+++..|...|+  ++.++|.++.......-.....   ..  ..++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~--~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---ID--ELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Cc--ccccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999998  8888888743211111111111   11  01235567889999999995

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00093  Score=57.38  Aligned_cols=116  Identities=19%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc----CCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL----EDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal----~~a   97 (256)
                      +++|.|+||+|.+|..++..|+++|.  +|+++|.+.  ......++.... ..++..+..+ .   ++++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            35899999999999999999999998  899999874  222223332211 1123222211 1   122222    245


Q ss_pred             CEEEEecCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~---~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      |++|+++|....   ...+..   +.+..|......+.+.+.++   ...+.++++|-
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  135 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS  135 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            999999875321   122222   34566666555555555443   22356666664

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.53  E-value=0.0021  Score=55.62  Aligned_cols=118  Identities=14%  Similarity=0.202  Sum_probs=66.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~   95 (256)
                      ++|.|+||+|.+|.+++..|+++|.  +|+++|.+.  ......++.+.....++..+..+ ++   +..+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3699999999999999999999998  999999873  22222222221100112222111 11   1111       24


Q ss_pred             CCCEEEEecCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206           96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~r~---d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ..|+||+++|.+...   ..+..   ..+..|+.-    .+.+.+.+.+..+++.++++|...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            679999999865422   11222   234455443    445555555555456777776543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.51  E-value=0.0012  Score=58.79  Aligned_cols=99  Identities=15%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.|||++||+ |.+|.+++..|+..|.  ..+|+++|++.. ....++....   .++.   ..+..+.+++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999998872  238888887531 1122332211   1222   224456788999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      .    +.            .+.++++.+..+. ++.++|.+.+.+.
T Consensus        74 ~----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         74 K----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             C----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            2    11            1223334454443 5667777666665

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.51  E-value=0.0021  Score=55.16  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc-------cccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------eal~   95 (256)
                      +.++|.|+||+|.+|.+++..|+.+|.  +|++++.+........+....  .++..+..+ ++   +.       +...
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            446899999999999999999999998  999998764322222222211  112222111 11   11       1234


Q ss_pred             CCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~----~~~p~~~iiv~tN  146 (256)
                      ..|++|+++|......   .   .-.+.+..|+.....+.+.+.    +....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999998643211   1   122345566554444444443    3333466666664

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.001  Score=58.53  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---cccccc-------C
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQAL-------E   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal-------~   95 (256)
                      .+++|.|+||+|++|++++..|+.+|.  +|++++.+...  ..++.... ..++..... -+   ++.+.+       .
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   77 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFG   77 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence            345799999999999999999999998  89999986321  11222111 011211111 01   111222       3


Q ss_pred             CCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ..|+||++||.... +  ..+.   .+.+..|+.-...+.+.+.++   ...+.+|++|.
T Consensus        78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            58999999986421 1  1122   234667766655566554332   22345666664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.51  E-value=0.00059  Score=54.58  Aligned_cols=114  Identities=16%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----CC---cEEEEecCCccccccCCCCEEEEe
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RS---EVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----~~---~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      |+|+|+ |.+|..+|..|.+.++  +|.+++..+ ...  .+.....    ..   .+.......+..+....+|+||+|
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~   74 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLE--AIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA   74 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHH--HHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHH--hhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence            789998 9999999999999898  999998764 211  1221110    11   111111011112356899999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      .-..                -..+.++.++++. |++.++.+-|=++.     .+.+.+.  +|+.++++-
T Consensus        75 vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~-----~~~l~~~--~~~~~v~~g  122 (151)
T PF02558_consen   75 VKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGN-----EEVLAEY--FPRPRVLGG  122 (151)
T ss_dssp             SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSH-----HHHHHCH--STGSGEEEE
T ss_pred             eccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCc-----HHHHHHH--cCCCcEEEE
Confidence            5221                1345666677777 67788888898873     2444444  566777665

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.50  E-value=0.0018  Score=57.57  Aligned_cols=96  Identities=13%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +||++||+ |.+|++++..|++.|+  ..+|+.+|.++..  ...+.+.. .  +..   ..+..+.+++||+||++.. 
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~-g--~~~---~~~~~e~~~~aDiIiLavk-   72 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY-G--ITI---TTNNNEVANSADILILSIK-   72 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc-C--cEE---eCCcHHHHhhCCEEEEEeC-
Confidence            48999998 9999999999998885  3479999876322  22222110 1  222   2244567889999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                         |            ..+.++++.+..+. ++.++|-+.-.++
T Consensus        73 ---P------------~~~~~vl~~l~~~~~~~~lvISi~AGi~  101 (272)
T PRK12491         73 ---P------------DLYSSVINQIKDQIKNDVIVVTIAAGKS  101 (272)
T ss_pred             ---h------------HHHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence               2            11334444454443 5567766666665

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.001  Score=57.48  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|+.++..|+++|+  +|++++.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999998  899999863

>PLN02996 fatty acyl-CoA reductase

Probab=97.50  E-value=0.0018  Score=62.33  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCC----chhH-HHHHhcc------------cC----CCcEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN----TPGV-AADVGHI------------NT----RSEVAGY   84 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~----~~g~-~~dl~~~------------~~----~~~v~~~   84 (256)
                      +.+.|.|+||+||+|+.++..|+.. .-+.+|+++-+.+    .... ..++.+.            .+    ..+++..
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i   89 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV   89 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence            3458999999999999999987764 3355777776542    1101 0111110            00    1234444


Q ss_pred             ecCC----------c-cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 025206           85 MGND----------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY  135 (256)
Q Consensus        85 ~~t~----------d-~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~  135 (256)
                      .++-          + +.+.++++|+||++|+... ...+..+....|+....++++.+.+.
T Consensus        90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            3321          1 2345678999999997653 23345667788999999999988765

>PRK05717 oxidoreductase; Validated

Probab=97.49  E-value=0.00056  Score=59.25  Aligned_cols=146  Identities=14%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~   96 (256)
                      .+++.|+||+|++|++++..|+.+|.  +|+++|.++...... ..+..  ..+..+..+ ++   +.+       .+..
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999997  999998764221110 11111  112111111 11   111       1235


Q ss_pred             CCEEEEecCCCCCCC-----CC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           97 SDVVIIPAGVPRKPG-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        97 aDvVIi~ag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      .|++|++||......     .+   ....+..|+.....+.+.+.++-  ..+.+|++|.....           .+ .+
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-~~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-EP  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-CC
Confidence            799999998653211     11   23456777776666666665432  34566666643221           11 22


Q ss_pred             CCcEEEEeechHHHHHHHHHHHcC
Q 025206          167 EKKLFGVTTLDVVRAKTFYAGKAN  190 (256)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~  190 (256)
                      ..-.+|.+..-...+-+.+++.++
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhc
Confidence            222344432222355666777775

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.49  E-value=0.002  Score=55.41  Aligned_cols=119  Identities=21%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCC-------------c
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGND-------------Q   89 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~-------------d   89 (256)
                      ..+.++|.|+|++|++|..++..|+..|.  +|+++|.+.  ......++.+.... ++..+..+-             .
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~   85 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADT   85 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHH
Confidence            33556899999999999999999999987  999999873  22233344332211 122111110             1


Q ss_pred             cccccCCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 025206           90 LGQALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN  146 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~---~~p~~~iiv~tN  146 (256)
                      +.+.+...|+||++||....  +  ..+.   ...+..|+.....+.+.+.+   ..+...++++|.
T Consensus        86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            12233468999999986321  1  1122   23455666544444444332   123456666664

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.49  E-value=0.00082  Score=59.43  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEecCCCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK  109 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~ag~~~~  109 (256)
                      |+|+|++|+||+++...|...|+  +|+++-++..... . ..+..    +...   ..+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~-~-~~~~~----v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKAS-Q-NLHPN----VTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchh-h-hcCcc----cccc---chhhhcccCCCCEEEECCCCccc
Confidence            57999999999999999999999  9999877632211 1 11111    1111   11223333 79999999998743


Q ss_pred             CC----CCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEec
Q 025206          110 PG----MTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMIS  145 (256)
Q Consensus       110 ~g----~~r~d~~~~N~~i~~~i~~~i~~~~p~~-~iiv~t  145 (256)
                      ..    +....+.+--+...+.+.+.|.+..... .+|+.|
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaS  110 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISAS  110 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecc
Confidence            32    1123344444677888899998766333 444443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.48  E-value=0.0027  Score=57.30  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-cC----CCc-EEEEecCCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NT----RSE-VAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-~~----~~~-v~~~~~t~d~~eal~~aDvVI  101 (256)
                      .|||+|+|+ |.||..++..|...|.  +|.+++.....  ...+... ..    ... ........+ .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~--~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQR--LAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHH--HHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEE
Confidence            469999998 9999999999999887  99999885211  1111110 00    000 110000111 12356789999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++.-..        +        ..+.++++..+. +++.++.+-|=++..     +.++..  ++.+++++-
T Consensus        76 v~vK~~--------~--------~~~al~~l~~~l~~~t~vv~lQNGv~~~-----e~l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LACKAY--------D--------AEPAVASLAHRLAPGAELLLLQNGLGSQ-----DAVAAR--VPHARCIFA  125 (305)
T ss_pred             EECCHH--------h--------HHHHHHHHHhhCCCCCEEEEEeCCCCCH-----HHHHHh--CCCCcEEEE
Confidence            985210        1        234455565554 888888899998842     223333  677777765

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.002  Score=56.43  Aligned_cols=118  Identities=17%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|++|+.++..|+.+|.  +|++++.+.  ......++.......++..+..+ .   ++.+.+      
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999763  22222233211101122222111 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC----CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                       ...|++|+++|.....+    .+.   .+.+..|......+.+.+.++   ...+.++++|.
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence             26899999998542211    122   223445655555555444332   23456666654

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0015  Score=57.22  Aligned_cols=114  Identities=14%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cc------cccCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LG------QALED   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~------eal~~   96 (256)
                      +.+.|+||+|++|..++..|+.+|.  +|++++.+.  ......++.+......+..+..+ +|   +.      +.+..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999998  899998763  11121222221111123322211 12   11      11245


Q ss_pred             CCEEEEecCCCCCC--C-CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPRKP--G-MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~--g-~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~t  145 (256)
                      .|+||+++|.....  . .+   -.+.+..|......+.+.    +++... +.++++|
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs  139 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS  139 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence            79999999864321  1 11   123345665554444444    444433 4455555

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.47  E-value=0.0022  Score=54.75  Aligned_cols=115  Identities=23%  Similarity=0.331  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------A   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------a   93 (256)
                      +.+++.|+||+|++|+.++..|+.+|.  .|++.+.+.  +.....++.     .++..+..+ +   ++.+       .
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  788887652  221112221     112211111 1   1111       2


Q ss_pred             cCCCCEEEEecCCCCCC---C---CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 025206           94 LEDSDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPv  148 (256)
                      +...|+||+++|.....   .   ++-...+..|+.....+++.+.+.   .+.+.++++|...
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            34689999999864321   1   112334566665544454444322   2345666676543

>PLN00016 RNA-binding protein; Provisional

Probab=97.46  E-value=0.001  Score=61.45  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=59.5

Q ss_pred             CceEEEE----cCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH---------HHHhcccCCCcEEEEecC-Cccccc
Q 025206           28 DRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---------ADVGHINTRSEVAGYMGN-DQLGQA   93 (256)
Q Consensus        28 ~~KI~II----GaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~---------~dl~~~~~~~~v~~~~~t-~d~~ea   93 (256)
                      ++||.|+    ||+|++|++++..|+.+|+  +|++++.+......         .++...    .++...++ .++.+.
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~~  125 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSSA----GVKTVWGDPADVKSK  125 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhhc----CceEEEecHHHHHhh
Confidence            4689999    9999999999999999998  99999886321110         112111    12222221 233333


Q ss_pred             c--CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 L--EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l--~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +  .++|+||++++..              ....+.+++.+++.+.+ .+|.+|
T Consensus       126 ~~~~~~d~Vi~~~~~~--------------~~~~~~ll~aa~~~gvk-r~V~~S  164 (378)
T PLN00016        126 VAGAGFDVVYDNNGKD--------------LDEVEPVADWAKSPGLK-QFLFCS  164 (378)
T ss_pred             hccCCccEEEeCCCCC--------------HHHHHHHHHHHHHcCCC-EEEEEc
Confidence            3  5799999986421              22345567777666544 455454

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.46  E-value=0.00064  Score=65.00  Aligned_cols=96  Identities=16%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC--CCcEEEEecCCccccccC---CCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~---~aDvVIi~  103 (256)
                      .+|+|||. |.+|+++|..|+.+|+  +|.++|+++..  ..++.+...  ...+..   .+++++.++   ++|+|+++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            58999998 9999999999999999  99999987422  122221100  011222   345556554   58988888


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      ...               -+.++++++.+..+- |+.+||..+|-
T Consensus        74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence            522               133445555555543 67788888873

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.46  E-value=0.002  Score=55.24  Aligned_cols=114  Identities=21%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l   94 (256)
                      .+++.|+||+|++|+.++..|+.+|.  +|+++|.+..  .....++.+..  .++..+..+ .+   ++++       +
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  9999988732  22222333211  122222211 11   1122       2


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~----~~~p~~~iiv~tN  146 (256)
                      ...|++|+++|......   .+.   ...+..|+.....+.+.+.    +.. .+.+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECc
Confidence            35899999998532111   122   2235666665555544443    333 345555553

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.45  E-value=0.0011  Score=60.55  Aligned_cols=93  Identities=19%  Similarity=0.287  Sum_probs=60.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..|...|.  +|+.+|.+....  .+.        .+ +  ..++.+++++||+|+++.
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKDADIISLHV  206 (330)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhcCCEEEEeC
Confidence            445679999998 9999999999998887  999999863210  110        11 1  235678999999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...  +         .+..++.  .+.+....|++++|+++-
T Consensus       207 P~t--~---------~t~~li~--~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        207 PAN--K---------ESYHLFD--KAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             CCc--H---------HHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence            322  1         0111111  122333347889998874

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.45  E-value=0.00091  Score=60.52  Aligned_cols=120  Identities=21%  Similarity=0.265  Sum_probs=72.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhH---HHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|+|+ |.||+.+++.|.+.|.  +|.++-..+. +..   -+.+.+..........  ..+..+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~--~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV--AATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc--cccChhhcCCCCEEEEEe
Confidence            69999998 9999999999999995  7777755421 111   1111111110011111  112245678999999995


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE-EEEeec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL-FGVTTL  176 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv-iG~t~l  176 (256)
                      -..                -..+.++.+..+. |+++|+.+=|=.+.     .+..++.  +++++| .|+|..
T Consensus        76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~-----~e~l~~~--~~~~~il~G~~~~  126 (307)
T COG1893          76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGH-----EEELRKI--LPKETVLGGVTTH  126 (307)
T ss_pred             ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcH-----HHHHHHh--CCcceEEEEEeee
Confidence            322                1356667777777 67788888898883     3444444  565544 456543

>PRK08643 acetoin reductase; Validated

Probab=97.45  E-value=0.0059  Score=52.70  Aligned_cols=115  Identities=22%  Similarity=0.304  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~   95 (256)
                      +++.|+||+|.+|..++..|+++|.  +|+++|.+.  ......++.+..  ..+..+..+ ++   +.+       .+.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3788999999999999999999997  899999873  222223333211  112211110 11   111       234


Q ss_pred             CCCEEEEecCCCCC-CC--CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206           96 DSDVVIIPAGVPRK-PG--MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        96 ~aDvVIi~ag~~~~-~g--~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      +.|++|+++|.... +-  .+.   ...+..|+..    .+.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986422 11  111   2234455543    33444444444445677777653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.44  E-value=0.0016  Score=55.74  Aligned_cols=115  Identities=21%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal------   94 (256)
                      ..++|.|+||+|++|..++..|+.+|.  +|++++.+.  ......++....  ..+..+.++    .++.+.+      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899998873  222222333211  123222211    1112222      


Q ss_pred             -CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                       ..+|+||+++|.... +  ..+.   .+.+..|+.....+.+.+    .+.. ...++++|.
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence             378999999976432 1  1222   234555655555555444    3333 345555553

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.44  E-value=0.0007  Score=62.05  Aligned_cols=96  Identities=24%  Similarity=0.328  Sum_probs=62.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.++|.|+||+|++|+.++..|..+.-..+|++++.+.  +.....++.+.    .+      .++.+++.++|+||+++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWVA  223 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEECC
Confidence            34589999999999999999998642245899998763  22222222211    11      14567899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      +.+...-.+..++                  .+..++|=++-|=|+
T Consensus       224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDV  251 (340)
T PRK14982        224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNL  251 (340)
T ss_pred             cCCcCCcCCHHHh------------------CCCeEEEEecCCCCC
Confidence            8764211222111                  356788888889774

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0018  Score=56.52  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|++|.+++..|+.+|.  +|++.|.+.  ......++....  ..+..+..+ ++   +.++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999873  222223332211  122222111 12   1111       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                      +...|+||++||......   .+   ..+.+..|......+.+.+    .+..+.+.+++++.
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            246899999998632211   11   2234455655444444444    34445566777765

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0054  Score=52.62  Aligned_cols=114  Identities=19%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCcc---c-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL---G-------QAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------eal   94 (256)
                      .+++.|+||+|++|.+++..|+.+|.  +|+++|.+..  .....++.+..  ..+..+.. -++.   .       +.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  9999998732  12222222211  11111111 1121   1       112


Q ss_pred             CCCCEEEEecCCCCC--C----CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRK--P----GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~--~----g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~t  145 (256)
                      ...|+||+++|....  +    ..+.   .+.+..|+.....+.+.+.++.   +.+.++++|
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS  144 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence            468999999986421  1    1121   2345566665555555555432   234666666

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0032  Score=53.92  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|++++.+.  ......++....  .++..+..+ ++   +.+.       
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899998763  222223333211  122222211 11   1111       


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +.+.|+||+++|.....   ..+.   ...+..|..-...+.+.+.++   .+.+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            25789999999864321   1111   223455655555555554432   22456666654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.43  E-value=0.0012  Score=56.18  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            4569999998 9999999999999996 589999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.42  E-value=0.0016  Score=64.82  Aligned_cols=89  Identities=18%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc--CCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~aDvVIi~a  104 (256)
                      ..|||.|+||+|++|++++..|..+|+  +|... ..       |+.+..            .+...+  .+.|+||++|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~~------------~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDRS------------SLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccHH------------HHHHHHHhhCCCEEEECC
Confidence            457999999999999999999998887  66321 10       111100            011122  2689999999


Q ss_pred             CCCCCC--C---CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206          105 GVPRKP--G---MTRDDLFNINAGIVKDLCSAIAKYCP  137 (256)
Q Consensus       105 g~~~~~--g---~~r~d~~~~N~~i~~~i~~~i~~~~p  137 (256)
                      +....+  +   .+..+.+..|+.....+++.+++.+.
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            754221  1   24566778999999999999998865

>PRK07069 short chain dehydrogenase; Validated

Probab=97.40  E-value=0.007  Score=51.85  Aligned_cols=114  Identities=22%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEec-CCc---c-------ccccC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMG-NDQ---L-------GQALE   95 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~eal~   95 (256)
                      ||.|+||+|.+|.+++..|+.+|.  +|++.+.+ .  +.....++........+..+.. -.+   +       .+.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            588999999999999999999998  99999976 2  1222222222110001111110 011   1       12234


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|+||+++|......   .+   ....+..|+.    .++.+.+.+.+... +.++++|.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            6899999998643211   11   2234556665    66777777766543 45666654

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.00069  Score=60.37  Aligned_cols=95  Identities=24%  Similarity=0.266  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~  106 (256)
                      |||.|+|++|++|+.+...|. .+.  +|+-.|...     +|+.+..            .+.+.++  .-|+||++|..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999998887 445  788777643     4555422            1223343  56999999986


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..-.  ..++..-+.-|......+++...+.+  +++|.+|
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiS   99 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIS   99 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEee
Confidence            5432  23455567889999999999998885  4555554

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.39  E-value=0.00089  Score=56.95  Aligned_cols=115  Identities=20%  Similarity=0.303  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------   93 (256)
                      ..++|.|+||+|++|..++..|+++|+  +|++++.+..  .....++....  .++..+..+ .   ++.++       
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998742  22222232111  112211111 1   11122       


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~t  145 (256)
                      +...|.||+++|.....   ..+.   .+.+..|+.....+.+.+.++   .....+|++|
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            23569999998753221   1111   233555666555555555322   2224566565

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.39  E-value=0.0034  Score=54.22  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccc-------cc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------AL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------al   94 (256)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.|.+.  .......+.+..  .++..+..+ +   ++.+       .+
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998  899999873  222222232211  112221110 1   1111       23


Q ss_pred             CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNP  147 (256)
                      ...|++|+++|.....   ..+   -.+.+..|+.....+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            4589999999864311   111   23345567665555555555442   34567767654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.39  E-value=0.003  Score=56.38  Aligned_cols=65  Identities=23%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-----HHHHhcccCCCcEEEEecCCc-cccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d-~~eal~~aDvVI  101 (256)
                      .++|+|+|. |.+|.+++..|...|+  .+.+++.+...+.     .+++.+..          +.+ ..++.++||+||
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----------~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----------TVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----------ccchhhhhcccCCEEE
Confidence            469999998 9999999999999999  5656655532111     12222110          112 146788999999


Q ss_pred             EecC
Q 025206          102 IPAG  105 (256)
Q Consensus       102 i~ag  105 (256)
                      ++..
T Consensus        70 vavP   73 (279)
T COG0287          70 VAVP   73 (279)
T ss_pred             Eecc
Confidence            9953

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.00049  Score=60.09  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.++|.|+||+|.+|++++..|+.+|.  +|++.+.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY--RVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            345799999999999999999999998  89999886

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.37  E-value=0.0012  Score=61.52  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEec
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++||+|+||+|++|..+...|..++.+ ||.++..++..+....-.+.... ....... ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            45679999999999999999999888533 88888665322221111111100 0111011 112 13468999999986


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            3

>PLN02256 arogenate dehydrogenase

Probab=97.36  E-value=0.0011  Score=59.96  Aligned_cols=65  Identities=22%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~a  104 (256)
                      +.+||+|||+ |.+|..++..|...|.  +|+.+|.+.....+.++   .    +..   ..+..+.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence            4579999998 9999999999998886  89999987422112211   1    111   12344454 4799999985

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0033  Score=54.25  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cc-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LG-------QAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------eal   94 (256)
                      .++|.|+||+|.+|.+++..|+.+|.  +|+++|.+..  .....++....  .++..+..+ ++   +.       +.+
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF   80 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998732  22223332111  112211111 11   11       123


Q ss_pred             CCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      ...|+||++||....  +  ..+.   ...+..|+.-...+.+.+.++-  ..+.+|++|.
T Consensus        81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            468999999986422  1  1122   2345566655555555554431  1246666664

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.36  E-value=0.00026  Score=62.15  Aligned_cols=122  Identities=21%  Similarity=0.334  Sum_probs=77.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC----CCc-----cEEEEEeCCC--------chhHHHHHhcccCCCcEEEEecCCc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGNDQ   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~----~~~-----~eV~LiD~~~--------~~g~~~dl~~~~~~~~v~~~~~t~d   89 (256)
                      +..||.+.|| |.-|..++.+|...    |+-     ++++++|.+-        +......+.+...+.  ..   ..+
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~--~~---~~~   97 (255)
T PF03949_consen   24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPE--KD---WGS   97 (255)
T ss_dssp             GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTT--T-----SS
T ss_pred             HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccc--cc---ccC
Confidence            4459999998 99999998877654    873     6899999972        111122233222111  10   137


Q ss_pred             cccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--CchHHHHHHHHHhCCC
Q 025206           90 LGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTY  165 (256)
Q Consensus        90 ~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd--~~~~i~~~~~~~~~~~  165 (256)
                      +.|+++++  |++|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..  ..++  .++++    +
T Consensus        98 L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p--eda~~----~  157 (255)
T PF03949_consen   98 LLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP--EDAYE----W  157 (255)
T ss_dssp             HHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H--HHHHH----T
T ss_pred             HHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH--HHHHh----h
Confidence            78999999  9998876643   2           125789999999999999999999987  6443  23333    3


Q ss_pred             CCCcE-EEEe
Q 025206          166 NEKKL-FGVT  174 (256)
Q Consensus       166 ~~~kv-iG~t  174 (256)
                      ...++ |+++
T Consensus       158 t~g~ai~AtG  167 (255)
T PF03949_consen  158 TDGRAIFATG  167 (255)
T ss_dssp             TTSEEEEEES
T ss_pred             CCceEEEecC
Confidence            34444 5663

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0033  Score=56.17  Aligned_cols=117  Identities=20%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------A   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------a   93 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++++.+..  .....++........+..+..+ .+   +.+       .
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            345899999999999999999999998  8999988632  2122233211101122222211 11   111       1


Q ss_pred             cCCCCEEEEecCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||....+.    +.-...+..|...    .+.+.+.+.+.. .+.||++|.
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  152 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS  152 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence            246899999998632211    1122334555544    566666665543 356666653

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.34  E-value=0.0014  Score=58.83  Aligned_cols=91  Identities=14%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC---CCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~---aDvVIi~ag  105 (256)
                      |||++||. |.+|++++..|...|+  +|+++|.++..  ...+.+..    ...   ..++++.+++   +|+||++..
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence            58999998 9999999999999998  99999987422  12232211    111   2244455544   699999853


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN  146 (256)
                      .+               +.++++++.+... .++.++|..|+
T Consensus        69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence            21               1223333444433 36667777754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.34  E-value=0.0019  Score=55.90  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCcccc-------ccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQ-------ALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~e-------al~   95 (256)
                      +++.|+|++|.+|..++..|+.+|.  +|+++|.+..  .....++..     .+..+..    ..++.+       .+.
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERFG   79 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  9999998742  111222211     1111111    111222       234


Q ss_pred             CCCEEEEecCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN  146 (256)
                      ..|++|+++|......   .   +-...+..|+.....+.+.+.++    .+.+.+++++.
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            6899999998642111   1   12334566666555555555432    33466766664

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.33  E-value=0.0012  Score=59.04  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=49.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||++||. |.+|+++|..|...|+  +++.+|.++.+. +..+......    .   ..+..++.++||+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga~----~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGAT----V---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCCc----c---cCCHHHHHHhCCEEEEecC
Confidence            58999998 9999999999999999  999999985432 2333332211    1   1234678999999999964

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0069  Score=53.21  Aligned_cols=159  Identities=15%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---------hhHHHHHhcccCCCcEEEEec----CCcccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYMG----NDQLGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---------~g~~~dl~~~~~~~~v~~~~~----t~d~~eal   94 (256)
                      .+++.|+||+|++|..++..|+++|.  +|++++.+..         .....++....  .++..+..    ..++.+.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence            35799999999999999999999998  9999987621         11122222111  11222211    11122222


Q ss_pred             -------CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCCchHHHHHH
Q 025206           95 -------EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        95 -------~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                             ...|++|+++|.... +  ..+.   ...+..|+.....+.+.+.++   ...+.+++++.+....       
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------  154 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD-------  154 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence                   368999999986321 1  1222   223455655444444444332   2346677666443210       


Q ss_pred             HHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       159 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                         ..+++....++.+..-..++-+.++..++  +..|++..+-
T Consensus       155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence               00013334445543333456667777775  3456554443

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0014  Score=55.32  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC---CCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE---DSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~---~aDvV  100 (256)
                      ++++.|+||+|++|..++..|+++ +  +|++++.+...  ..++.+...  .++.+.+    ..++.++++   +.|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            458999999999999999999988 6  89999986321  112221100  1111111    112333343   69999


Q ss_pred             EEecCCC
Q 025206          101 IIPAGVP  107 (256)
Q Consensus       101 Ii~ag~~  107 (256)
                      |+++|..
T Consensus        76 i~~ag~~   82 (227)
T PRK08219         76 VHNAGVA   82 (227)
T ss_pred             EECCCcC
Confidence            9999864

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.32  E-value=0.0012  Score=57.01  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      |+|.|+||+|.+|..++..|+.+|.  +|++++.++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999998  999999873

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.31  E-value=0.0016  Score=60.39  Aligned_cols=56  Identities=27%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++|+|||.+|.+|.+++..|.+. ++  +|+.+|..          +..          ..+..+.+++||+||++.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence            3569999998899999999999865 44  89999873          100          123456789999999995

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.30  E-value=0.0048  Score=52.40  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++++|.|+||+|.+|+.++..|+++|+  ++++....
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~   39 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRS   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence            456899999999999999999999998  77665544

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0031  Score=54.25  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ++|.|+||+|.+|+.++..|+++|.  +|++++.+.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999998  899998764

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.29  E-value=0.0035  Score=56.33  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC---CCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~---~aDvVIi~a  104 (256)
                      |||+|||. |.+|++++..|+..|+  +|.++|.++..  ..++.+..    .+.   ..++.+.++   ++|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999998 9999999999999998  99999987422  22233221    111   123334444   479999985

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.29  E-value=0.0042  Score=62.04  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|++.  +.....++........+..+.. -+   ++.+++      
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999998  999999873  2222222321100001111111 11   222233      


Q ss_pred             -CCCCEEEEecCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       .+.|++|++||......   .+..   ..+..|+.    ..+...+.+.+....+.++++|.
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             36899999998643211   1111   12223322    34455666665544555665553

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0047  Score=53.02  Aligned_cols=115  Identities=20%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Ccc----------ccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQL----------GQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~----------~eal~   95 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.+.+.  ......++........+..+..+ ++.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  899998873  22222333221111122222211 111          12245


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||......   .+   -...+..|......+.+.+    .+... ..++++|.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence            7899999998643221   11   1223455655444444443    33333 34555553

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0036  Score=56.43  Aligned_cols=116  Identities=17%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---c-------ccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---L-------GQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~ea   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+.+.  ......++........+..+.. -.+   +       .+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  999998873  2222233332111112222211 111   1       112


Q ss_pred             cCCCCEEEEecCCCCCCC-----CCHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG-----MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-----~~r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ....|++|+.||....+.     +.....+..|..    +.+.+.+.+.+.  .+.|+++|.
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS  150 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSS  150 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEec
Confidence            345899999998643211     112233444533    345555555433  345555553

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0034  Score=56.00  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~   73 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARR   73 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECC
Confidence            36799999999999999999999998  99999987

>PRK09135 pteridine reductase; Provisional

Probab=97.27  E-value=0.0023  Score=54.71  Aligned_cols=105  Identities=21%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      .++|.|+||+|++|++++..|+.+|.  +|++++...   ......++.+... ..+..+.++ ++   +.+++      
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  999998752   1222223332111 112211111 11   11222      


Q ss_pred             -CCCCEEEEecCCCCC--CC----CCHHHHHHHHHHHHHHHHHHHHHh
Q 025206           95 -EDSDVVIIPAGVPRK--PG----MTRDDLFNINAGIVKDLCSAIAKY  135 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~--~g----~~r~d~~~~N~~i~~~i~~~i~~~  135 (256)
                       ...|+||+++|....  ..    .+..+.+..|+.....+.+.+.++
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  130 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ  130 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence             357999999985321  11    112445667777666666666543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.26  E-value=0.00049  Score=60.40  Aligned_cols=138  Identities=18%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             ccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCC----C-----ccEEEEEeCCCc----h----hHHHHHhcc
Q 025206           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNP----L-----VSRLALYDIANT----P----GVAADVGHI   75 (256)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~----~-----~~eV~LiD~~~~----~----g~~~dl~~~   75 (256)
                      |-.+.+-+...+..+..||.+.|| |.-|..++.+|...+    +     -.+++++|.+-+    .    .....+.+ 
T Consensus        10 AgllnAlk~~g~~l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~-   87 (254)
T cd00762          10 AGLLAALKVTKKKISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR-   87 (254)
T ss_pred             HHHHHHHHHhCCChhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH-
Confidence            333333333334445569999998 999999998876543    2     128999998721    1    11111110 


Q ss_pred             cCCCcEEEEecCCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--Cc
Q 025206           76 NTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--ST  151 (256)
Q Consensus        76 ~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd--~~  151 (256)
                       +..+-.   ...++.++++  ++|+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..  ..
T Consensus        88 -~~~~~~---~~~~L~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~  149 (254)
T cd00762          88 -FANPER---ESGDLEDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAEC  149 (254)
T ss_pred             -HcCccc---ccCCHHHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCcccc
Confidence             100101   1247889999  999998776544   2           125788899999999999999999986  43


Q ss_pred             hHHHHHHHHHhCCCCCCcEEEEee
Q 025206          152 VPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus       152 ~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      +|  -++++.+   ..+.+++++.
T Consensus       150 tp--e~a~~~t---~G~ai~AtGs  168 (254)
T cd00762         150 TA--EEAYTAT---EGRAIFASGS  168 (254)
T ss_pred             CH--HHHHhhc---CCCEEEEECC
Confidence            33  2333322   2356888853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0055  Score=53.66  Aligned_cols=113  Identities=15%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALEDS   97 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~a   97 (256)
                      +++.|+||+|++|+.++..|+.+|.  +|++++.+..  ...++.... ...+..+..+ ++   +.+       .+...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  8999887631  111221110 1122222111 11   111       23458


Q ss_pred             CEEEEecCCCCCCC-C--C---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           98 DVVIIPAGVPRKPG-M--T---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~~g-~--~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      |+||+++|...... .  +   -...+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998753211 1  1   1234566777666666665322   22345665553

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.26  E-value=0.0035  Score=58.89  Aligned_cols=104  Identities=18%  Similarity=0.277  Sum_probs=61.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi  102 (256)
                      +.++|.|+||+|.+|.+++..|+++|.  +|+++|.+... ....+.+...  .+....    ...++.+.+.+.|++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~--~v~~v~~Dvsd~~~v~~~l~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDL--PVKTLHWQVGQEAALAELLEKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCC--CeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence            346899999999999999999999998  99999876321 1111211111  111111    11123445778999999


Q ss_pred             ecCCCCCCCCCH---HHHHHHHHHH----HHHHHHHHHHh
Q 025206          103 PAGVPRKPGMTR---DDLFNINAGI----VKDLCSAIAKY  135 (256)
Q Consensus       103 ~ag~~~~~g~~r---~d~~~~N~~i----~~~i~~~i~~~  135 (256)
                      +||.......+.   .+.++.|...    ++.+.+.+++.
T Consensus       252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998653322222   3345666554    44445545443

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0015  Score=56.63  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ++.++|.|+||+|.+|..++..|+++|.  +|+++|.+.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            3456899999999999999999999998  999999874

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.005  Score=52.58  Aligned_cols=116  Identities=18%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhH----HHHHhcccCCCcEEEEecC-Cc---cccc---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGV----AADVGHINTRSEVAGYMGN-DQ---LGQA---   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~----~~dl~~~~~~~~v~~~~~t-~d---~~ea---   93 (256)
                      +.++|.|+||+|++|+.++..|+.+|.  +|++++...  ....    ..++...  ...+..+.++ .+   +.+.   
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            346899999999999999999999998  899987641  1111    1122111  1122222111 11   1122   


Q ss_pred             ----cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH-H---hCCCcEEEEecC
Q 025206           94 ----LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA-K---YCPNAIVNMISN  146 (256)
Q Consensus        94 ----l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~-~---~~p~~~iiv~tN  146 (256)
                          ....|+||+++|.....   ..+.   ...+..|......+++.+. .   ......+++++.
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  147 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIAS  147 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence                24689999999865321   1121   2345667777777776665 1   122245555554

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0047  Score=52.96  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .+++.|+||+|.+|+.++..|+.+|.  +|++++.+.
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            45899999999999999999999997  899998763

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.0018  Score=56.04  Aligned_cols=71  Identities=25%  Similarity=0.462  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHH-Hhc-ccCCCcEEEEe-cCCccccc-cCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-VGH-INTRSEVAGYM-GNDQLGQA-LEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~d-l~~-~~~~~~v~~~~-~t~d~~ea-l~~aDvVIi~a  104 (256)
                      |+++|+|+ |.+|+++|..|...|+  +|+++|.++..  +.. +.+ .... -+.+.. ...-++++ +.++|++|.+-
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADELDTH-VVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999998 9999999999999999  99999998421  111 110 1100 111111 01123344 78999999985


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.0028  Score=54.13  Aligned_cols=117  Identities=18%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------   94 (256)
                      .+++.|+|++|.+|..++..|+.+|.  +|++++.+.  ......++...  ..++..+..+ +   ++.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999873  22222233221  1123222211 1   122222       


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPv  148 (256)
                      .+.|+||+++|......   .+.   ...+..|+.-...+.+.+.++   ...+.+++++.+.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence            47999999998643211   111   233555655444444444332   2234555566443

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0021  Score=56.60  Aligned_cols=109  Identities=12%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---ccccc--------CC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--------ED   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal--------~~   96 (256)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.+.+...  ..++.+..    +..+.. -+|   +++++        ..
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~   76 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR   76 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999998  99999986321  11222211    111110 011   11111        25


Q ss_pred             CCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||......   .+   ....+..|+..    .+.+.+.+.+... +.||++|.
T Consensus        77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS  135 (277)
T PRK05993         77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS  135 (277)
T ss_pred             ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence            799999998643211   11   22345566544    5666666665543 45666653

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0047  Score=53.20  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++.+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   41 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA   41 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999999997  899999873

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0073  Score=52.31  Aligned_cols=117  Identities=20%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  ......++.......++..+..+ +   ++.++       
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  899999873  22223333321111122222111 1   12222       


Q ss_pred             cCCCCEEEEecCCCCCC--C-CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP--G-MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~--g-~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.....  . .+.   ...+..|+...    +.+.+.+.+. ..+.||++|.
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  145 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS  145 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence            23689999999864211  1 111   22344554433    4444444433 3456666654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.23  E-value=0.0013  Score=57.96  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ||.|+||+|++|+.++..|++.|+  +|+.+..+.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999999998  899998763

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=97.23  E-value=0.003  Score=57.08  Aligned_cols=105  Identities=17%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---c--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc--CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---T--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--ED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~~   96 (256)
                      ..+|.|+||+|+||++.+..|..+|.  +|+++|...   +  -..+..+.+.  ...+.++.++ .|   +++.+  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999999  999999752   1  1112222221  1234433321 11   22222  35


Q ss_pred             CCEEEEecCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206           97 SDVVIIPAGVPRK-P-GMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus        97 aDvVIi~ag~~~~-~-g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                      -|-|++.|+.... + -+.+..+...|+--...+.+.+++++
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            7889998765421 1 13456677888888899999999998

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0041  Score=53.70  Aligned_cols=110  Identities=16%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Ccccccc-------C
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQAL-------E   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal-------~   95 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.+...    ....    ..+..+..+    .++.+.+       .
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDG----RPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcC----CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999998  99999886321    0010    011111110    1122222       3


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~----~~p~~~iiv~tN  146 (256)
                      ..|+||++||......   .+   ....+..|+.....+.+.+.+    ....+.+|++|.
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  135 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS  135 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            5699999998642111   11   233455666555555554433    223356776664

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0061  Score=52.84  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~   95 (256)
                      ++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++....  ..+..+..+ .+   +.++       +.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  9999998732  22222333211  123222211 11   1111       23


Q ss_pred             CCCEEEEecCCCCCCC---C-CH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 025206           96 DSDVVIIPAGVPRKPG---M-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tNP  147 (256)
                      +.|+||+++|......   . +.   ...+..|+.....+.+.+.++-  ..+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999998643211   1 11   2335666665555555554321  23456666543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.22  E-value=0.0015  Score=58.52  Aligned_cols=72  Identities=22%  Similarity=0.343  Sum_probs=50.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +..||+|+|+ |.+|.++++.|+..|. .+|+++|++.  ++..+.++.+....  ..... ..++.+.++++|+||.+
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~~--~~~~~-~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFPA--ARATA-GSDLAAALAAADGLVHA  199 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCCC--eEEEe-ccchHhhhCCCCEEEEC
Confidence            3468999998 9999999999998884 5899999983  44445555432211  22211 22344578899999998

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0017  Score=55.94  Aligned_cols=114  Identities=22%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec-CC---cccc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-ND---QLGQ-------AL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~-t~---d~~e-------al   94 (256)
                      +.++|.|+||+|.+|+.++..|+++|.  +|++.+.+.. .....++...    .+..+.. ..   ++.+       .+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGG----NAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCC----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  8999988632 1112222211    1111110 11   1111       12


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ...|+||+++|......   .+.   ...+..|......+.+.+.++   ...+.++++|.
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            46799999998643211   111   224556655555555554433   22456666653

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.21  E-value=0.0058  Score=52.42  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc----------cccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~   95 (256)
                      +++.|+||+|++|+.++..|+.+|.  +|++++.+..  .....++....  .++.....+ .+          +.+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  9999998732  11112222111  122222111 11          223356


Q ss_pred             CCCEEEEecCCCCC-CC--CCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRK-PG--MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~-~g--~~r---~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                      +.|+||+++|.... +.  .+.   ...+..|......+.+.+    ++... ..++++|.
T Consensus        78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~~v~~ss  137 (255)
T TIGR01963        78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW-GRIINIAS  137 (255)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            78999999986421 11  111   233445655544444444    44433 35555553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.21  E-value=0.00089  Score=60.13  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=47.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|||. |.+|.+++..|+..|+  +|.++|+++..  ..++....    ...   ..++.+++++||+||++..
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence            48999998 9999999999999998  99999987422  22233211    111   2345678899999999853

>PRK12742 oxidoreductase; Provisional

Probab=97.20  E-value=0.0048  Score=52.50  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.++|.|+||+|.||..++..|+.+|.  +|++.+..
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            345899999999999999999999998  88887653

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0016  Score=55.63  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ||+.|+||+|.+|+.++..|+.+|.  +|++++.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~   33 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGAR   33 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            5899999999999999999999998  99999886

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.20  E-value=0.0029  Score=56.98  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+.+.  +.....++...  ...+..+..+ .+   +.+++      
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999997  899998763  22222333211  1122222111 11   12222      


Q ss_pred             -CCCCEEEEecCCCCC----CCCC---HHHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 025206           95 -EDSDVVIIPAGVPRK----PGMT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMIS  145 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~----~g~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~~~iiv~t  145 (256)
                       ...|++|+.||....    ...+   ....+..|...    .+.+.+.+.+... .+.||++|
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence             248999999985321    1112   23345666543    4444555554432 24566665

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0032  Score=55.01  Aligned_cols=113  Identities=21%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~   95 (256)
                      ++|.|+||+|.+|+.++..|+.+|.  +|++.+.+.  +.....++....  .++.....+ ++   +.+.       ..
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999998  899998763  222222333211  112211111 11   1121       24


Q ss_pred             CCCEEEEecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|+++|.....   ..+.   ...+..|..    ..+.+.+.+.+.. .+.++++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            689999999864321   1121   223455543    4444555555443 345666653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.19  E-value=0.0033  Score=54.09  Aligned_cols=93  Identities=23%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +||+|||. |.+|..+...+.... .+.-+.+||.+..+  +..+......+.      .+++.+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999998 999999988877553 35567888987322  233332211111      1355667799999999985  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                                    .+.+++++.++-+.+.|.+++.++-
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGA   94 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGA   94 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechh
Confidence                          3557788888877777777665543

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.012  Score=50.52  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CCC--chhHHHHHhcccCCCcEEEEec-CCc---ccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal------   94 (256)
                      .++|.|+||+|++|+.++..|+.+|.  +|++.. .+.  ......++....  ..+..+.. -.|   +.+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999997  777653 332  111122222111  11222211 111   11112      


Q ss_pred             -------CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 -------EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 -------~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                             .+.|+||+++|......   .+.   ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   26899999998643211   111   2334567666666666665543 2345665653

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.028  Score=48.51  Aligned_cols=116  Identities=12%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccE-EEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~e-V~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------   93 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  + |+++|.+..  .....++...  ...+..+.. -++   +.+.      
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999987  6 999988631  2222222211  112221111 111   1111      


Q ss_pred             -cCCCCEEEEecCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 -LEDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +.+.|++|+++|......   .+..   ..+..|+.-.    +...+.+.+....+.++++|.
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence             236899999998653211   1222   2345554433    334444444433456666654

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.18  E-value=0.0046  Score=56.04  Aligned_cols=116  Identities=17%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec--CCc-------cccccC-
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG--NDQ-------LGQALE-   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~--t~d-------~~eal~-   95 (256)
                      ...+.|+||+|.+|..++..|+.+|.  +|++++++.  ++....++........+..+..  +.+       +.+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            35789999999999999999999998  899999873  3333344432111111221110  111       112233 


Q ss_pred             -CCCEEEEecCCCCC---C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 -DSDVVIIPAGVPRK---P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 -~aDvVIi~ag~~~~---~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       |.|++|+.||....   +  ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS  193 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS  193 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence             45699999986421   1  1121   23455665544    34444444433 456666653

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.18  E-value=0.001  Score=59.25  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=71.9

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcC----CCc-----cEEEEEeCCCc--------hhHHHHHhcccCCCcEEEEec
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--------PGVAADVGHINTRSEVAGYMG   86 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~----~~~-----~eV~LiD~~~~--------~g~~~dl~~~~~~~~v~~~~~   86 (256)
                      +..+..||.+.|| |.-|..++.+|...    |+-     ..++++|.+-+        ......+.+.. . . .   .
T Consensus        21 ~~l~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~-~---~   93 (279)
T cd05312          21 KPLSDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E-K---E   93 (279)
T ss_pred             CChhhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c-c---c
Confidence            3444569999998 99999999877654    652     58999998721        11111222211 1 0 0   1


Q ss_pred             CCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           87 NDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        87 t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ..++.++++  ++|+.|=+.+.+   |           -+.+++++.|.++|++.+|+-.|||..
T Consensus        94 ~~~L~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          94 GKSLLEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             CCCHHHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            247889999  899988765433   2           124788899999999999999999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0015  Score=55.46  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999997  999998763

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0029  Score=55.85  Aligned_cols=115  Identities=18%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l   94 (256)
                      .+.+.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ +   ++.+.       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34689999999999999999999998  899999873  222223333211  112222111 1   11111       2


Q ss_pred             CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||.....   ..+.   ...++.|+...    +.+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1122   23345565444    444444444443466766664

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.18  E-value=0.0018  Score=59.17  Aligned_cols=99  Identities=20%  Similarity=0.285  Sum_probs=63.4

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..|...|.  +|..+|.......  +... .    ..    ..++.+.+++||+|+++.
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-~----~~----~~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-G----AE----YRPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-C----CE----ecCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999998887  9999998632211  1111 1    11    125667899999999996


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~  150 (256)
                      ...  + +        +..++.  .+.+....|++++|+++  ..+|.
T Consensus       213 P~t--~-~--------T~~~i~--~~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        213 PLT--K-E--------TYHMIN--EERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             CCC--h-H--------HhhccC--HHHHhcCCCCeEEEECcCchhcCH
Confidence            322  1 0        111111  12333445889999997  45663

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.18  E-value=0.0014  Score=59.88  Aligned_cols=97  Identities=27%  Similarity=0.357  Sum_probs=60.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++|+|||. |.+|+.+|..|+ ..|.  +|+.+|......    ... .    +.   ...++.+++++||+|+++
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~----~~~-~----~~---~~~~l~ell~~aDvIvl~  207 (332)
T PRK08605        143 SIKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAK----AAT-Y----VD---YKDTIEEAVEGADIVTLH  207 (332)
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHh----HHh-h----cc---ccCCHHHHHHhCCEEEEe
Confidence            345679999998 999999999984 3455  899999763211    111 0    11   123567889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      ....  + .++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       208 lP~t--~-~t~-~li--~----~~~---l~~mk~gailIN~sRG~~vd  242 (332)
T PRK08605        208 MPAT--K-YNH-YLF--N----ADL---FKHFKKGAVFVNCARGSLVD  242 (332)
T ss_pred             CCCC--c-chh-hhc--C----HHH---HhcCCCCcEEEECCCCcccC
Confidence            6332  1 111 111  1    122   22334788999887  3555

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.18  E-value=0.015  Score=52.87  Aligned_cols=57  Identities=9%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           40 IGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        40 VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      =|+++|..|+..|+  +|+++|+++.   .....++.+...    ..   ..+..++.++||+||++..
T Consensus        31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~---AaS~aEAAa~ADVVIL~LP   90 (341)
T TIGR01724        31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV---VSDDKEAAKHGEIHVLFTP   90 (341)
T ss_pred             CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee---cCCHHHHHhCCCEEEEecC
Confidence            47889999999999  9999998742   122334444321    11   2345688999999999953

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0028  Score=54.14  Aligned_cols=115  Identities=16%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      .+++.|+||+|.+|+.++..|+.+|.  +++++..+..   .....++....  .++..+..+ .   ++++++      
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  8888765421   12222222211  122222211 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN  146 (256)
                       ...|+||+++|......   .+   ....+..|+.....+++.+.+. .+.+.++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence             36899999998642111   11   2233556665555555554433 24456776653

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.17  E-value=0.0051  Score=53.11  Aligned_cols=116  Identities=22%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------ea   93 (256)
                      ..+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  ......++.+...  .+..+..+ .+   +.       +.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKD   83 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  999999873  2222233332211  12111110 11   11       12


Q ss_pred             cCCCCEEEEecCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +...|+||+++|.... +  ..+   -...+..|......+.+.+.++   ...+.++++|.
T Consensus        84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            2457999999986421 1  111   2234555654444444444332   23356666653

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0067  Score=52.26  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec----CCccccccC-CCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQALE-DSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~-~aDvVI  101 (256)
                      ++|.|+||+|.+|..++..|+++|.  +|++.+.+..  .....+......  .+.....    ..++.+++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            3799999999999999999999997  8888887631  111111111111  1221111    112333444 899999


Q ss_pred             EecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206          102 IPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++||......   .+.   ...+..|+.    ..+.+.+.+.+... +.+|++|.
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            9998653211   111   122334543    33344444444443 56666663

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.16  E-value=0.0025  Score=56.14  Aligned_cols=91  Identities=13%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..|||+|||+ |.+|++++..|...+..  .+++.+|.++..     +       ....   ..+..+.++++|+||++.
T Consensus         2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence            3479999998 99999999999988743  258888875321     0       0111   123345678999999984


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      -    |            ..+.++++.+..+-++..+|...+-++
T Consensus        66 k----p------------~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 K----P------------DLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             C----H------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence            1    1            224455555554433345666667666

>PRK06398 aldose dehydrogenase; Validated

Probab=97.16  E-value=0.0023  Score=55.70  Aligned_cols=111  Identities=20%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-----HHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.+.....     ..|+.+..   .+...  -....+.+...|++|+
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~   78 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN   78 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            45899999999999999999999998  8999987632110     11111100   00000  0001122346899999


Q ss_pred             ecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206          103 PAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +||.+...   ..+.   ...+..|+...    +.+.+.+.+. ..+.||++|.
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  131 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS  131 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            99864321   1122   23355565543    4444444433 3456666653

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.16  E-value=0.0038  Score=55.84  Aligned_cols=116  Identities=19%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-CccccccC--CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQLGQALE--DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d~~eal~--~aDvVIi  102 (256)
                      |++.|+|++||+|+++...+..+..-.+|+.+|.--   ......++.+..-..-++...++ ..+.+.++  +.|+|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            589999999999999999888776545688888642   11222444442211112211111 12234455  6899999


Q ss_pred             ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025206          103 PAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (256)
Q Consensus       103 ~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~  144 (256)
                      .|...-  +.=....++++.|+--...+.++.+++...-.++-+
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HI  124 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHI  124 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEe
Confidence            875321  111235678899999999999999999854334444

>PRK09186 flagellin modification protein A; Provisional

Probab=97.16  E-value=0.0059  Score=52.56  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~   37 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADID   37 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecC
Confidence            346899999999999999999999998  89999876

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.16  E-value=0.0031  Score=55.86  Aligned_cols=66  Identities=21%  Similarity=0.326  Sum_probs=43.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||. |.+|.+++..|...|+..+|+.+|.++..  ...+.+...   ...   ..++.++ .+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~~-~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEEL-KKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHHH-hcCCEEEEeC
Confidence            58999998 99999999999988864478889987321  111222111   100   1133343 4699999995

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.15  E-value=0.013  Score=50.60  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---cccc-------cCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea-------l~~   96 (256)
                      .+.+.|+|++|.+|.+++..|+..|.  +|+++|.........++....  ..+..+.. -++   +.+.       +..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999998  899888754322222332211  11221111 111   1122       236


Q ss_pred             CCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||.....   ..+   -...+..|+...    +.+.+.+.+..+.+.++++|.
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            89999999864311   111   223455665443    344444444444577777664

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.15  E-value=0.004  Score=53.38  Aligned_cols=115  Identities=17%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      .+++.|+||+|.+|+.++..|+.+|.  +|++.+...   ......++.+..  .++.....+ .+   +.++       
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  777665431   122223333211  122222111 11   1122       


Q ss_pred             cCCCCEEEEecCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +...|+||++||......      +.-.+.+..|......+.+.+.++   ...+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            234799999998743211      112344566766555555555443   23456666654

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.14  E-value=0.0082  Score=52.09  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      |++.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999998  899999873

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0077  Score=52.79  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccc-------cccCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLG-------QALEDS   97 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-------eal~~a   97 (256)
                      +.|.|+||+|++|++++..|+++|.  +|++.+.+...  ..++.+.. ...+..+..+ +   ++.       +.+...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTAT--LADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999997  89999986321  11111110 0111111110 1   111       123467


Q ss_pred             CEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |.||+++|......   .+   -...+..|+..    .+.+.+.+++.... .+|++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            99999998753211   11   23345566554    44455555554443 455555

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.12  E-value=0.011  Score=50.93  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++|.|+|++|++|+.++..|+++|.  +|+++|..
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~   35 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRP   35 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecC
Confidence            3688999999999999999999997  99999875

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.12  E-value=0.015  Score=50.75  Aligned_cols=132  Identities=14%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccC-C--CcEEEEec----CCccccccCCCCE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINT-R--SEVAGYMG----NDQLGQALEDSDV   99 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~-~--~~v~~~~~----t~d~~eal~~aDv   99 (256)
                      +-+.|+||++.+|..+|..|++.|.  +|+|..++  +++..+.++.+... .  ..++....    -..+.+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3467999999999999999999999  99999987  35666666663110 0  11111000    0123455678999


Q ss_pred             EEEecCCCCCCC------CCHHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206          100 VIIPAGVPRKPG------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (256)
Q Consensus       100 VIi~ag~~~~~g------~~r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k  169 (256)
                      +|..||......      ++-..++..|++-+    +-+.+.+.+.. .+.||+++.-...           .. ||...
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~-----------~~-y~~~~  151 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGR-----------YP-YPGGA  151 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecccccc-----------cc-CCCCc
Confidence            999999754321      12344677786655    44555554443 4588888754442           12 77788


Q ss_pred             EEEEee
Q 025206          170 LFGVTT  175 (256)
Q Consensus       170 viG~t~  175 (256)
                      +++-|.
T Consensus       152 vY~ATK  157 (246)
T COG4221         152 VYGATK  157 (246)
T ss_pred             cchhhH
Confidence            887753

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0048  Score=53.53  Aligned_cols=33  Identities=36%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++|.|+||+|.+|..++..|+++|.  +|+++|.+
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~   35 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA--TLGLVARR   35 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            5899999999999999999999998  99999987

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.11  E-value=0.0045  Score=55.26  Aligned_cols=121  Identities=19%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCCcEEEEec----CCccc-------c
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG----NDQLG-------Q   92 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~~v~~~~~----t~d~~-------e   92 (256)
                      ...+.|.|+||+.-+|.++|+.++..|.  .++++-..  +++....++.......++.....    ..+.+       .
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999998  77888665  23333344443322111222111    11222       3


Q ss_pred             ccCCCCEEEEecCCCCCCCC-C------HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206           93 ALEDSDVVIIPAGVPRKPGM-T------RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~-~------r~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      -+.+.|+.|..||..+ .+. +      ..+.++.|    +...+...+.+++.+ ++.|++++...+-
T Consensus        88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~  154 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGK  154 (282)
T ss_pred             hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccc
Confidence            4679999999999877 331 1      22344444    678889999999888 8888888876653

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0012  Score=56.34  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=64.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCcccccc---CCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL---EDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal---~~aDvVIi  102 (256)
                      +.+++.|+|++|.+|..++..|+.+|.  +|++++.+...  ..++.+......+..- ....++.+.+   ...|+||+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence            446899999999999999999999998  89999986311  1112111000001100 0011122222   35899999


Q ss_pred             ecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 025206          103 PAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~----~p~~~iiv~tN  146 (256)
                      ++|.....   ..+   -...+..|+.-...+.+.+.+.    +..+.++++|.
T Consensus        84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            99864321   111   2233456666555555555443    22356666663

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0054  Score=53.59  Aligned_cols=117  Identities=20%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~ea-------l   94 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  +.....++....  .++..+..    ..++.+.       +
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  899999863  222222332211  11111111    1112222       2


Q ss_pred             CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tNPv  148 (256)
                      ...|++|+++|.....   ..+.   ...+..|+.....+.+.+.+.  .+++.++++|.+.
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            4579999998753211   1122   223456655544555444332  1346777777543

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.11  E-value=0.0068  Score=52.45  Aligned_cols=36  Identities=36%  Similarity=0.465  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|++|.+++..|+.+|.  +|+++|.+.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            446899999999999999999999998  899999863

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.09  E-value=0.008  Score=52.05  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-------   94 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++.++ .......+.+..  .++..+..+ .+   +.+.+       
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  899998762 111112222211  122222211 11   11222       


Q ss_pred             CCCCEEEEecCCCCC-C--CCC---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~-~--g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNP  147 (256)
                      ...|++|+++|.... +  ..+   ..+.+..|+.....+.    +.+.+.. .+.+++++..
T Consensus        90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  151 (258)
T PRK06935         90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASM  151 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCH
Confidence            367999999986431 1  111   2234455654443334    4443332 3566666653

>PRK09242 tropinone reductase; Provisional

Probab=97.09  E-value=0.012  Score=50.97  Aligned_cols=116  Identities=13%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|++++.+.  ......++.......++..+..+ .+          +.+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999873  22223333322111122222111 11          11234


Q ss_pred             CCCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|+||+++|.... +  ..+.   ...+..|+.-.    +.+.+.+++. +.+.+|++|.
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  147 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS  147 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence            568999999986321 1  1122   22344555443    3444444433 3356666654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.08  E-value=0.0032  Score=54.40  Aligned_cols=117  Identities=11%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------   93 (256)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|+++|.+.  +.....++....  .++.....+ +   ++.++       
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999998  999999873  222233333211  112211111 1   12222       


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCCC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNPv  148 (256)
                      +...|++|+++|.....   ..+.   ...+..|+.-...+.    +.+.+. ..+.++++|...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence            23469999999864211   1111   234556655444455    444333 345677776543

>PRK06128 oxidoreductase; Provisional

Probab=97.08  E-value=0.0094  Score=53.17  Aligned_cols=115  Identities=22%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC----chhHHHHHhcccCCCcEEEEecC-C---ccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSEVAGYMGN-D---QLG-------Q   92 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-------e   92 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.+.    .......+....  .++..+..+ .   ++.       +
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999998  888876542    111222222211  112211111 1   111       1


Q ss_pred             ccCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      .+...|++|++||.....+    .+   ....+..|+.-...+++.+.++- +.+.||+++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2346899999998642111    12   23456777776666777766553 3457776654

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0062  Score=52.31  Aligned_cols=112  Identities=19%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccC----CCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE----DSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~----~aDvV  100 (256)
                      .++.|+||+|.+|..++..|+.+|.  +|+++|.+....  ..+.+...  ++..+..    ..+++++++    ..|.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~d~~   75 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSA--NIFTLAFDVTDHPGTKAALSQLPFIPELW   75 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcC--CCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence            4789999999999999999999998  899999873211  11111110  1111110    112222332    35788


Q ss_pred             EEecCCCCCC--C-CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          101 IIPAGVPRKP--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~--g-~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      |+.+|.....  . .+.   .+.+.-|......+.+.+..+- +...+++++.
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         76 IFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             EEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            8888743211  1 122   2346677776777777666542 3445666654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.07  E-value=0.0038  Score=53.13  Aligned_cols=116  Identities=21%  Similarity=0.310  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEec-CCc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------   93 (256)
                      +.++|.|+|++|++|+.++..|+.+|.  +|++...+..   .....++....  .++..... -.+   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999998  8877765422   11222222111  11222111 111   1111      


Q ss_pred             -cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 025206           94 -LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tN  146 (256)
                       +.+.|.||+++|......   .+.   ...+..|......+.+.+.++.   +.+.++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             246899999998643211   112   2234556666666666665543   2345665654

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.07  E-value=0.00084  Score=60.41  Aligned_cols=77  Identities=22%  Similarity=0.432  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCch-----hHHHHHhcccC-------C-CcEEEEecCCccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP-----GVAADVGHINT-------R-SEVAGYMGNDQLGQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~-----g~~~dl~~~~~-------~-~~v~~~~~t~d~~ea   93 (256)
                      ++||+.||| |+||-+....++.+ +.+ +|.++|++..+     ...+.+.++.+       . ..+- +  ++|++.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdieka   75 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKA   75 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHH
Confidence            469999998 99999876655443 322 99999997311     00111121111       1 1222 2  4688899


Q ss_pred             cCCCCEEEEecCCCCC
Q 025206           94 LEDSDVVIIPAGVPRK  109 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~  109 (256)
                      ++.||+|++...+|.+
T Consensus        76 i~eadlvfisvntptk   91 (481)
T KOG2666|consen   76 IKEADLVFISVNTPTK   91 (481)
T ss_pred             hhhcceEEEEecCCcc
Confidence            9999999999887764

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.019  Score=49.98  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999998  999999873

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.06  E-value=0.0049  Score=55.94  Aligned_cols=92  Identities=20%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ..++|+|+|. |.||+.++..|..-|.  +|..+|..+....  ....      .   ....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~--~~~~------~---~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP--GVQS------F---AGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC--Ccee------e---cccccHHHHHhcCCEEEECCCC
Confidence            4579999998 9999999999998888  9999997531100  0000      0   1123567899999999998532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .  +         .+..++.  .+.+....|++++|+++
T Consensus       201 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 T--P---------ETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             C--H---------HHHHHhH--HHHHhcCCCCcEEEECC
Confidence            1  1         1222221  23444556889999997

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.024  Score=49.06  Aligned_cols=146  Identities=11%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c----hhHHHHHhcccCCCcEEEEecC-C---ccccc----
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYMGN-D---QLGQA----   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~----~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea----   93 (256)
                      .+++.|+||+|.+|..++..|+.+|.  ++++++.+.  .    .....++....  .++..+..+ +   ++.+.    
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~   83 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA   83 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHH
Confidence            35899999999999999999999997  767775431  1    11112222111  122222111 1   11111    


Q ss_pred             ---cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCCchHHHHHHHHHh
Q 025206           94 ---LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKKA  162 (256)
Q Consensus        94 ---l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~~~~i~~~~~~~~  162 (256)
                         +...|++|++||.....   ..+   ....+..|......+++.+.+.. +.+.++++ +.....            
T Consensus        84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~------------  151 (257)
T PRK12744         84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA------------  151 (257)
T ss_pred             HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc------------
Confidence               24689999999864211   112   22345567555545555554432 33444433 322221            


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcC
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKAN  190 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~  190 (256)
                      . .|....++.+..-...+-+.+++.++
T Consensus       152 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~  178 (257)
T PRK12744        152 F-TPFYSAYAGSKAPVEHFTRAASKEFG  178 (257)
T ss_pred             c-CCCcccchhhHHHHHHHHHHHHHHhC
Confidence            0 12223344543334466677888775

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.05  E-value=0.0018  Score=55.48  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEEecCCCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVPRK  109 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi~ag~~~~  109 (256)
                      |+|+||+|.+|++++..|...++  +|.++=++........+.+.... .+... ....++.++++|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999999887  88887655322233334433211 01100 011346678999999999865432 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (256)
Q Consensus       110 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~  138 (256)
                        ..+       .+..+.++++.++.+-+
T Consensus        77 --~~~-------~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 --PSE-------LEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             --CCH-------HHHHHHHHHHHHHHT-S
T ss_pred             --hhh-------hhhhhhHHHhhhccccc
Confidence              112       34456677777777744

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06196 oxidoreductase; Provisional

Probab=97.05  E-value=0.014  Score=52.48  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccC-CCcEEEEecCCccc-------cccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLG-------QALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d~~-------eal~~   96 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.+++..  .....++..... ...+.   ...++.       +....
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~---d~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLA---DLESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCC---CHHHHHHHHHHHHhcCCC
Confidence            345899999999999999999999998  9999988732  111222221100 00110   001111       12357


Q ss_pred             CCEEEEecCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||....+.    +.....+..|...    ++.+.+.+.+.. .+.||++|.
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            899999998643211    1123334555443    555666665543 356666653

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.008  Score=52.09  Aligned_cols=116  Identities=22%  Similarity=0.279  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l   94 (256)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|++++.+.. ......+....  .++..+..+ +   ++.+.       +
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   80 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRG--HRCTAVVADVRDPASVAAAIKRAKEKE   80 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999998  8999988631 11222222111  122222111 1   11112       2


Q ss_pred             CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ...|+||+++|.....   ..+   ....+..|+.....+.+.+.++   ...+.++++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  141 (263)
T PRK08226         81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS  141 (263)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            3579999999863211   111   2234556665555555544432   22345665553

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0065  Score=53.84  Aligned_cols=97  Identities=19%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||++||+ |.+|+.++.-|...+.  ..+|+..|.+..+  ..++... ++  +..   +++..++.+.+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~--~~~l~~~-~g--~~~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEK--RAALAAE-YG--VVT---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHH--HHHHHHH-cC--Ccc---cCcHHHHHhhCCEEEEEe-
Confidence            479999998 9999999999998883  3478887776322  1123321 11  111   234457889999999996 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                         +|            ..+.+++++++...++.++|-+.-.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               33            225667777776446777777776666

>PLN02712 arogenate dehydrogenase

Probab=97.04  E-value=0.0041  Score=62.04  Aligned_cols=90  Identities=14%  Similarity=0.115  Sum_probs=57.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~ag  105 (256)
                      +++||+|||. |.+|..++..|...|+  +|+.+|.+.....+.++   .    +..   ..++.+.+ ++||+||++..
T Consensus        51 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViLavP  117 (667)
T PLN02712         51 TQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILLCTS  117 (667)
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEEcCC
Confidence            4679999998 9999999999998887  99999986322111111   1    221   12344434 57999999842


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIA-KY-CPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~-~p~~~iiv~t  145 (256)
                                      ...+.++++.+. .+ .|+++|+.++
T Consensus       118 ----------------~~~~~~vl~~l~~~~l~~g~iVvDv~  143 (667)
T PLN02712        118 ----------------IISTENVLKSLPLQRLKRNTLFVDVL  143 (667)
T ss_pred             ----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence                            122344555553 22 3677777665

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.013  Score=50.10  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ++++.|+|++|.+|..++..|+++|.  +|++++.+.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999998  899999873

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.015  Score=51.77  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-C---cccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-D---QLGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-----   94 (256)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|++++.+..   ......+...  ..++..+..+ .   ++.+.+     
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999988632   1222222211  1122222111 1   111222     


Q ss_pred             --CCCCEEEEecCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN  146 (256)
                        ...|+||++||.....    ..+   -...+..|+.....+.+.+.++ .+.+.+|++|.
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence              3579999999863211    111   2345677777777777776654 24556776664

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.04  E-value=0.011  Score=50.30  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~   63 (256)
                      +++|.|+||+|++|..++..|+++|+  ++++. +.+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~   39 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDIN   39 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            35899999999999999999999997  88887 876

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.004  Score=54.52  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.+.+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~   34 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARK   34 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence            4789999999999999999999998  99999876

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.03  E-value=0.0011  Score=57.25  Aligned_cols=108  Identities=18%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC------ch---hHHHHHhccc-CCCc------EEEEecCCccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------TP---GVAADVGHIN-TRSE------VAGYMGNDQLG   91 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~------~~---g~~~dl~~~~-~~~~------v~~~~~t~d~~   91 (256)
                      .-||+|+|. |-+|++.|..++..|+  +|.|||+.+      ++   ....+|++.. ...+      +..+.+++++.
T Consensus         3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~   79 (313)
T KOG2305|consen    3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN   79 (313)
T ss_pred             ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence            359999996 9999999999999999  999999973      12   2233444322 1111      11223577888


Q ss_pred             cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHH
Q 025206           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPI  154 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i  154 (256)
                      |..++|=.|=.|+              .+.+...+.+.+++++.. |..  |..|..+..|-+.
T Consensus        80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mpS~  127 (313)
T KOG2305|consen   80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMPSK  127 (313)
T ss_pred             HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccChHH
Confidence            8888885553332              233566778888998887 543  3477677765444

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.03  E-value=0.0023  Score=50.81  Aligned_cols=74  Identities=20%  Similarity=0.359  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +..++.|+|| |.+|..++..|...|. .+|.+++++.  +...+..+.    ...+.... -.++.+.+.++|+||.+.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~-~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG----GVNIEAIP-LEDLEEALQEADIVINAT   83 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT----GCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC----ccccceee-HHHHHHHHhhCCeEEEec
Confidence            3459999998 9999999999999985 5799999873  333333331    11233332 235666789999999986


Q ss_pred             CCC
Q 025206          105 GVP  107 (256)
Q Consensus       105 g~~  107 (256)
                      +.+
T Consensus        84 ~~~   86 (135)
T PF01488_consen   84 PSG   86 (135)
T ss_dssp             STT
T ss_pred             CCC
Confidence            554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.017  Score=49.35  Aligned_cols=111  Identities=21%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CCcc----------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL----------GQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~----------~eal   94 (256)
                      .+++.|+||+|.+|+.++..|+.+|.  +|++++.+..  .....++.     .++..+.. ..+.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  8999988631  11111111     11221111 1111          1223


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ...|+||+++|......   .+   -...+..|+.....+.+.+.++- ..+.+++++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            46899999998643211   11   22346677776666777766431 223444444

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.02  E-value=0.0035  Score=57.65  Aligned_cols=74  Identities=27%  Similarity=0.313  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeCCCchhHHHHHhcccCCC--cEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|+||+|++|..++..|...+.. +++ +++.++..+....-.+.....  .... . ..+.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999999877543 666 667653222211111111111  1111 1 1133344468999999863

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.02  E-value=0.0038  Score=59.71  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      +|+|||. |.+|.++|..|+.+|+  +|.++|+++.+  ..++.+... ...+.......++.+.++++|+|+++...+ 
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~-   74 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG-   74 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCc-
Confidence            4899998 9999999999999998  99999987422  222322100 001221111113333556899999985321 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                                    +.+.++++.+..+- ++.++|-.+|
T Consensus        75 --------------~~v~~Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        75 --------------APVDAVINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          22334445555543 6678888876

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.02  E-value=0.0055  Score=53.11  Aligned_cols=116  Identities=18%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---ccccc-------cC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQA-------LE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~ea-------l~   95 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++.+........+....  .++..+.. -+   ++.+.       +.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            345789999999999999999999998  899988753222222222211  11221111 11   12222       24


Q ss_pred             CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+....+.||+++.
T Consensus        83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS  143 (251)
T PRK12481         83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS  143 (251)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            5799999998643211   112   223445543    34555555554443467777764

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.011  Score=51.26  Aligned_cols=115  Identities=24%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cccc---c------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQLG---Q------AL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~~---e------al   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++++.+.  ......++..   ..++..+..+ .+..   +      .+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~   78 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM   78 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence            345899999999999999999999998  899999873  1112222211   1122222111 1111   1      13


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ...|++|++||......   .+   -.+.+..|+.....+.+.+.++   .+.+.+++++.
T Consensus        79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            46899999998643211   11   1234556655555555554432   22355666654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.02  E-value=0.0034  Score=55.06  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=44.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |.+|++++..|...++ ..++.++|.+...  ...+.+.. . .+..   ..+..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~-~-~~~~---~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF-P-KVRI---AKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc-C-CceE---eCCHHHHHHhCCEEEEEe
Confidence            58999998 9999999999988775 3456777765322  22222211 0 1222   124456778999999995

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.009  Score=51.98  Aligned_cols=116  Identities=18%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC----Ccc----cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN----DQL----GQAL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t----~d~----~eal   94 (256)
                      +.++|.|+||+|.+|..++..|+.+| .  .|++.+.+.   +.....++..... .+++....+    .++    ++..
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence            56789999999999999999998885 6  899998863   2223334432111 122222111    111    1111


Q ss_pred             --CCCCEEEEecCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPGM---TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g~---~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        .+.|++|+++|.......   +.   .+.+..|+.    ..+.+.+.+.+... +.++++|.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence              379999999887532111   11   123556653    33556666665544 45555653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.01  E-value=0.016  Score=50.45  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cc-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------eal   94 (256)
                      .+++.|+|++|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+.. -++   ++       +.+
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998  899998763  222222332211  12222211 111   11       123


Q ss_pred             CCCCEEEEecCCCCC-C-CC-C---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRK-P-GM-T---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~-~-g~-~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ...|++|+++|.... + .. +   -...+..|...    .+.+.+.+.+ ...+.|++++...
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~  148 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM  148 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence            457999999986421 1 11 1   12233445433    3344444443 2356677776543

>PRK07023 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0033  Score=53.89  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +|++.|+||+|.+|..++..|+++|.  +|++++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46899999999999999999999998  899998763

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.016  Score=50.78  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-cCCc----------cccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~eal~   95 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++++.+.  ......++...... ...... +-.+          ..+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            3789999999999999999999997  899998863  22222333321111 011010 0011          112235


Q ss_pred             CCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 025206           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPV  148 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tNPv  148 (256)
                      ..|++|+++|.....   ..+.   ...+..|+.....+.+.    +.+....+.|++++...
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            689999999864211   1122   23455565544444444    33333346677676543

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=97.00  E-value=0.003  Score=58.41  Aligned_cols=71  Identities=20%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-cCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~-~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|+||+|.||+.+...|. ++.+ ..+++++...+..+........  ...++  . .++ .+++++.|++++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~--~-~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQ--D-AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEE--c-Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5555 4688888765433332222211  11222  1 112 236899999999986

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.00  E-value=0.0027  Score=56.99  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=46.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||++||. |.+|++++..|+..|+  +|.++|+++.   ..++....    ...   ..+..++.++||+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            48999998 9999999999999998  9999998642   12232211    111   1234567899999999853

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0057  Score=52.85  Aligned_cols=34  Identities=44%  Similarity=0.497  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +++.|+||+|.+|..++..|+++|.  +|+++|.+.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3699999999999999999999997  899999863

>PLN02503 fatty acyl-CoA reductase 2

Probab=97.00  E-value=0.0087  Score=58.98  Aligned_cols=109  Identities=19%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCC----chhHH-HHHhc-----------cc-----CCCcEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN----TPGVA-ADVGH-----------IN-----TRSEVAGY   84 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~----~~g~~-~dl~~-----------~~-----~~~~v~~~   84 (256)
                      +.++|.|+||+||+|..++..|+..+. +.+|+++...+    +.... .++.+           ..     ...++...
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            356899999999999999999886543 56788886642    11111 11111           00     01234433


Q ss_pred             ecC-C---------ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206           85 MGN-D---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus        85 ~~t-~---------d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                      .++ .         +++...++.|+||++|+... ...+..+.+..|+....++++.+.+..
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            322 1         12223467999999997643 234456677889999999999887653

>TIGR02415 23BDH acetoin reductases

Probab=96.99  E-value=0.0065  Score=52.24  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LED   96 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~~   96 (256)
                      ++.|+|++|.+|..++..|++.|.  +|++++.+.  +.....++.+..  ..+..+..+ .+   +.++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            688999999999999999999998  899998763  222223333211  112222111 11   1111       235


Q ss_pred             CCEEEEecCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .|+||+++|.... +  +.+..   ..+..|+.    +++.+.+.+.+....+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986421 1  12222   23445543    3344555555555446666655

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07574 formate dehydrogenase; Provisional

Probab=96.98  E-value=0.0041  Score=58.02  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=62.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.||+.++..|..-|.  +|..+|.......   .....   .+..   ..++++.++.||+|+++..
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence            35579999998 9999999999998887  9999998642111   11100   1111   1256788999999999853


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      ..  +         ++..++.  .+.+....|.+++|+++  ..+|
T Consensus       258 lt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  290 (385)
T PRK07574        258 LH--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVD  290 (385)
T ss_pred             CC--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence            21  1         1111111  23344445788999987  3455

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.98  E-value=0.0078  Score=49.92  Aligned_cols=32  Identities=38%  Similarity=0.675  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ||+|+|+ |.+|+.++..|+..|. .+++|+|.+
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   32 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFD   32 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            6899998 9999999999999886 589999987

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.021  Score=49.51  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cc-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------eal   94 (256)
                      .+.+.|+||+|.+|..++..|+.+|.  +|++.+++.  +.....++.......++..+.. -++   +.       +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35789999999999999999999998  899999873  2222233332111112222211 111   11       123


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||......   .+.   ...+..|    ....+.+.+.+++.. .+.|+++|.
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            46799999998643211   111   1223333    334555666665433 356666654

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0016  Score=56.35  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.++|.|+||+|.+|+.++..|+..|.  +|++++.+.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            446899999999999999999999998  899998763

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.96  E-value=0.0062  Score=60.04  Aligned_cols=138  Identities=14%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCc---cc-cccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~-eal~~aDvVIi~  103 (256)
                      .++|.|+|. |.+|+.++..|..+++  +++++|.|+..  +..+.+...+ -+.+  +.++   ++ ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~-v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGYK-VYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCCe-EEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            368999998 9999999999999998  99999998422  2223322211 1111  1122   11 246799999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      -+.+           +.|.    .++..+++.+|+..++.- .||.+      .+.+++.|   .+.++=-+..-+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence            4321           2343    355567778898766544 46655      24556555   4455544444445566


Q ss_pred             HHHHHHcCCCCCcee
Q 025206          183 TFYAGKANVNVAEVN  197 (256)
Q Consensus       183 ~~la~~l~v~~~~v~  197 (256)
                      ...-..+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            666678899988874

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.018  Score=49.59  Aligned_cols=114  Identities=17%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l   94 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.+.  ......++.+..  .++..+..+ .+   +++.       .
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  899998863  222233333221  112222111 11   1111       2


Q ss_pred             CCCCEEEEecCCCC--CC--CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||...  .+  ..+   -...+..|+.    ..+.+.+.+.+.. .+.+++++.
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS  143 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST  143 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            36899999998632  11  112   2334566654    4445555555433 345666654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.94  E-value=0.025  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~   43 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRN   43 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            345799999999999999999999998  89999987

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.016  Score=50.55  Aligned_cols=114  Identities=21%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccC-CCcEEEEecCCc-------cccccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQ-------LGQALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d-------~~eal~~   96 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  .|++.+.+..  .....++.+... ..++.   ...+       +.+...+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999998  8999988632  111122221100 00000   0001       1122357


Q ss_pred             CCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|+++|......   .+   -...+..|+.    ..+.+.+.+.+.+ .+.|+++|.
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS  137 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS  137 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence            899999998643211   11   1234455654    3444455554433 456776764

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.94  E-value=0.0039  Score=52.89  Aligned_cols=114  Identities=19%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEec----CCcccccc-------CC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMG----NDQLGQAL-------ED   96 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal-------~~   96 (256)
                      |.|+|++|++|+.++..|+++|+  +|++++.+.   ......++.+...  ++.....    ..++.+++       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999998  899998753   1222233332211  1221111    11222222       34


Q ss_pred             CCEEEEecCCCCCC---C---CCHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 025206           97 SDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV  148 (256)
Q Consensus        97 aDvVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNPv  148 (256)
                      .|+||+++|.....   +   ......+..|......+.+.+.++.   ..+.++++|...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            69999999864321   1   1123456677776666777665542   234666666443

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.94  E-value=0.0051  Score=48.07  Aligned_cols=70  Identities=30%  Similarity=0.413  Sum_probs=42.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC-CCccEE-EEEeCCCchhHHHHHhccc--CCCcEEEEecCCccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRL-ALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV-~LiD~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      |||+|+|++|.+|+.++..+.+. ++  +| ..+|.+.......|+.+..  .+..+..   ++++++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~--~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGF--ELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTE--EEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCc--EEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence            69999999999999999999884 45  54 4557653111112222111  0122322   35778888899998876

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.93  E-value=0.0056  Score=52.45  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            4569999998 9999999999999986 589999987

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.93  E-value=0.027  Score=48.20  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+++.|+||+|.+|+.++..|+.+|.  +|++.+.+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            35899999999999999999999997  88876543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.93  E-value=0.0064  Score=54.05  Aligned_cols=70  Identities=26%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC--CCccEEE-EEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~-LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |+++||+|||. |.+|..++..|...  ++  +++ ++|.+...  +.++.... . ....   .+++++.++++|+|++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi   73 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVE   73 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEE
Confidence            56789999998 99999999888763  44  655 67876322  22222110 0 0011   1245667789999999


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +++
T Consensus        74 ~tp   76 (271)
T PRK13302         74 AAP   76 (271)
T ss_pred             CCC
Confidence            975

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.92  E-value=0.0036  Score=60.72  Aligned_cols=103  Identities=19%  Similarity=0.305  Sum_probs=64.1

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |.......++|+|+|. |.+|+.+|..|..-|.  +|+.||.........++   .    +..   ..++.+.+++||+|
T Consensus       131 ~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV  197 (525)
T TIGR01327       131 FMGTELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFI  197 (525)
T ss_pred             cCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEE
Confidence            3334445679999998 9999999999987787  99999975222222221   1    111   12567889999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      +++.....   +        +..++-  .+.+....|.+++|+++  ..+|
T Consensus       198 ~l~lPlt~---~--------T~~li~--~~~l~~mk~ga~lIN~aRG~~vd  235 (525)
T TIGR01327       198 TVHTPLTP---E--------TRGLIG--AEELAKMKKGVIIVNCARGGIID  235 (525)
T ss_pred             EEccCCCh---h--------hccCcC--HHHHhcCCCCeEEEEcCCCceeC
Confidence            99864221   0        111110  13344445778888886  3455

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.035  Score=47.74  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            45899999999999999999999998  8888754

>PRK08264 short chain dehydrogenase; Validated

Probab=96.92  E-value=0.0067  Score=51.68  Aligned_cols=113  Identities=15%  Similarity=0.065  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccc---cCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQA---LEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~ea---l~~aDv   99 (256)
                      +.++|.|+||+|.+|+.++..|+.+|. .+|++++.+.....  + ..    ..+.....    ..++.+.   +...|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~-~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D-LG----PRVVPLQLDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h-cC----CceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            345899999999999999999998884 37888887632111  0 10    11221111    1122222   335899


Q ss_pred             EEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 025206          100 VIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (256)
Q Consensus       100 VIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNP  147 (256)
                      ||+++|.....+    .+   ..+.+..|......+.+.+.+.   ...+.++++|..
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  134 (238)
T PRK08264         77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV  134 (238)
T ss_pred             EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence            999998732211    11   2233455655555555554332   234566666643

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.023  Score=49.03  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------A   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------a   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+.+.  .+....++.+..  .++..+..+ ++   +.+       .
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999998873  222223333211  112221111 11   111       2


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +...|++|+++|.....   ..+.   ...+..|+..    .+.+.+.+.+....+.+++++
T Consensus        84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            34789999999864321   1121   2234555443    344444444443345666664

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0052  Score=55.89  Aligned_cols=73  Identities=30%  Similarity=0.433  Sum_probs=47.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHH-HHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|+||+|.||+.+...|.++.+ +.++.++-..+..|.. .++..-...  +.-  ...+ ...++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~--v~~--~~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIG--VPE--DAAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcccc--Ccc--cccc-ccccccCCEEEEeCc
Confidence            46899999999999999999998543 6677777655433332 444322111  110  0112 235679999999986

>PRK05855 short chain dehydrogenase; Validated

Probab=96.89  E-value=0.01  Score=57.17  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+.+.  +.....++.....  .+..+.. -++   +.+.       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999998  899999873  2222233332111  1222111 011   1111       


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.....   ..+.   ...+..|+.    ..+.+.+.+.+.+..+.||++|.
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            23579999999875321   1122   223445643    34445555655555567777764

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.89  E-value=0.0045  Score=57.34  Aligned_cols=72  Identities=24%  Similarity=0.250  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH-cCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~-~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |++|+|+||+|+||.-+...++ ++.+ ..+++++...+..+...++...    ...... ..+ .+.++++|+||++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence            3699999999999999997444 4444 4568887654322222222221    111111 122 245789999999875

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.89  E-value=0.015  Score=58.48  Aligned_cols=93  Identities=19%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      .||+|||+ |.+|.+++..+...|+..+|+.+|.+....  ....+....  ..   ...++.++++++|+||++...  
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~--~~a~~~g~~--~~---~~~~~~~~~~~aDvVilavp~--   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSL--ELAVSLGVI--DR---GEEDLAEAVSGADVIVLAVPV--   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHH--HHHHHCCCC--Cc---ccCCHHHHhcCCCEEEECCCH--
Confidence            58999998 999999999999888544799999874221  111111110  00   123556778999999998531  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                                    ..+.++++.+.++. ++.+++.++
T Consensus        74 --------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 --------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                          12455556666554 555554444

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.88  E-value=0.0025  Score=53.43  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe--cCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~eal~~aDvVIi  102 (256)
                      +.+++.|+|++|.+|..++..|+..+.  +|++++.+.  +.....++.+. ....+....  ...++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            446899999889999999999998886  999998763  22222223211 111122111  11234467899998888


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.88  E-value=0.012  Score=50.54  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      .++|.|+||+|++|++++..|+++|.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            46899999999999999999999998  7776543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.87  E-value=0.0086  Score=51.77  Aligned_cols=112  Identities=15%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCC---cccc-------ccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQ-------ALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~---d~~e-------al~   95 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.+.... ....++.+..    +..+. +-+   ++.+       .+.
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFG   78 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999998  8888765421 1112222211    11111 001   1112       234


Q ss_pred             CCCEEEEecCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|+++|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+|++|.
T Consensus        79 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  138 (255)
T PRK06463         79 RVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS  138 (255)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            689999999874321   1122   2234455444    566666665433 456666653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.87  E-value=0.003  Score=53.60  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||.|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCC
Confidence            4569999998 9999999999999985 699999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.87  E-value=0.016  Score=49.42  Aligned_cols=114  Identities=22%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc--cCCCcEEEEecC-Cc---cccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NTRSEVAGYMGN-DQ---LGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~--~~~~~v~~~~~t-~d---~~ea-------l~   95 (256)
                      +++.|+|++|.+|+.++..|+.+|.  .|++.|.+.. ....++...  ....++.....+ .+   +.++       +.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999997  8999988632 111111110  011122222211 11   1111       23


Q ss_pred             CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|+++|.....   ..+   -...+..|+.....+    .+.+.+. +.+.++++|.
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss  139 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISS  139 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECC
Confidence            589999999864211   111   123345555544444    4444443 3456777764

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.028  Score=48.76  Aligned_cols=35  Identities=34%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCC-CcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG-~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+++.|+||+| .+|..++..|+.+|.  +|++.|.+
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~   51 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIH   51 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCC
Confidence            346899999977 599999999999998  89999876

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.86  E-value=0.047  Score=47.12  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~ea   93 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +++++|.+.  ......++.+..  .++..+..+ ++   +       .+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999997  899998763  222223333211  112111111 11   1       122


Q ss_pred             cCCCCEEEEecCCCCC--CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRK--PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~--~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +...|++|+++|....  ...+..   +.+..|+.-...+.+.+..+   ...+.++++|.
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            3467999999985321  112222   23566666555555554422   23345666654

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0084  Score=51.66  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.++|.|+||+|.+|+.++..|+..|.  +|++.+.+
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~   42 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRR   42 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            346899999999999999999999998  89999886

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.85  E-value=0.0061  Score=55.79  Aligned_cols=72  Identities=22%  Similarity=0.335  Sum_probs=45.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ++||+|+||+|++|..++..|..+++ ..|+..+-..+..+...++..    ..+...  ..+ ..+++++|+||++.|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~--d~~-~~~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE--DLT-TFDFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe--eCC-HHHHcCCCEEEECCCh
Confidence            46999999999999999999998765 236777754432233222221    122221  111 1356799999998753

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.038  Score=47.65  Aligned_cols=113  Identities=10%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~   95 (256)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.  +.....++....  .++..+..+ ++   +++       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  899999873  222223332211  122222111 11   111       124


Q ss_pred             CCCEEEEecCCCCC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 025206           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        96 ~aDvVIi~ag~~~~-~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..|++|+++|.... +  ..+.   ...+..|+...    +.+.+.+.+..+.+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            67999999985321 1  1222   23455565443    44444433333456777776

>PRK07985 oxidoreductase; Provisional

Probab=96.85  E-value=0.014  Score=52.00  Aligned_cols=116  Identities=20%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHH-HhcccCCCcEEEEec-CCc---c-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAAD-VGHINTRSEVAGYMG-NDQ---L-------G   91 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~d-l~~~~~~~~v~~~~~-t~d---~-------~   91 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.+.++..   ....+ +.+..  .++..+.. -++   +       .
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            335899999999999999999999998  89888764211   11111 11111  11221111 111   1       1


Q ss_pred             cccCCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           92 QALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      +.+...|++|+.||....  +  ..+.   ...+..|+.....+.+.+.++- ..+.||++|.
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            223467999999985321  1  1122   3345667665555555554432 3466777764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.85  E-value=0.0042  Score=49.70  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=48.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.++|+|+|+ |.+|..++..|...+ ..+|.++|.+..  ...+.++....  ....    ..++.+.++++|+||++.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~~   89 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINTT   89 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeCc
Confidence            3568999998 999999999998876 348999998732  22222222110  0011    124455689999999997


Q ss_pred             CCCC
Q 025206          105 GVPR  108 (256)
Q Consensus       105 g~~~  108 (256)
                      +.+.
T Consensus        90 ~~~~   93 (155)
T cd01065          90 PVGM   93 (155)
T ss_pred             CCCC
Confidence            6543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.83  E-value=0.0081  Score=54.89  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.++|+|||. |.+|.+++..|...|+  +|+..+.+....... .....    +.    ..+..+++++||+|+++.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~----~~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FE----VLTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Ce----eCCHHHHHhcCCEEEEcC
Confidence            4569999998 9999999999999998  888877652211111 11111    11    124567899999999985

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.83  E-value=0.002  Score=50.93  Aligned_cols=34  Identities=26%  Similarity=0.566  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..||+|+|+ |.+|+.++..|+..|. .++.|+|.+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDD   35 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCc
Confidence            358999998 9999999999999886 699999987

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.015  Score=50.12  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+++.|+||+|.+|.+++..|+..|.  .|+++|.+
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~   41 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRK   41 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            35799999999999999999999997  99999986

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.83  E-value=0.037  Score=47.35  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|++. +.+.  ......++....  ..+..+..+ +   ++.+++      
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  77764 4332  122222232211  112222111 1   111222      


Q ss_pred             -CCCCEEEEecCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tN  146 (256)
                       ...|+||+.+|.... +  ..+..   ..+..|......+++.+.++.   +.+.++++|.
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             368999999985321 1  11111   124456554445555544432   3356666664

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.049  Score=47.54  Aligned_cols=115  Identities=11%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------C
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------E   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------~   95 (256)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++.... ..++..+..+ +   ++++.+      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            34689999999999999999999998  899999873  222223332211 1122222111 1   122222      3


Q ss_pred             CCCEEEEecCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|+++|.+...   ..+..   ..+..|    +...+.+.+.+++.. .+.||++|.
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS  144 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS  144 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            589999999865321   11222   233444    345666777776543 456776664

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.82  E-value=0.0071  Score=58.17  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc----cCCCcEEEEecCCccccccC---CCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~----~~~~~v~~~~~t~d~~eal~---~aDv   99 (256)
                      +.++|++||. |.+|+++|..|+.+|+  +|..+|+...+  +.++.+.    ... .+..   ..++++.++   .+|+
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~-~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNL-PLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCc-cccc---CCCHHHHHhcCCCCCE
Confidence            4568999998 9999999999999999  99999987422  2222221    110 1111   223444444   5999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tN  146 (256)
                      ||++...+               +.+.+++..+... .|..++|-.||
T Consensus        76 Ii~~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT  108 (493)
T PLN02350         76 VIILVKAG---------------APVDQTIKALSEYMEPGDCIIDGGN  108 (493)
T ss_pred             EEEECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCC
Confidence            99985322               2233333344444 36677777776

>PLN03139 formate dehydrogenase; Provisional

Probab=96.82  E-value=0.0079  Score=56.14  Aligned_cols=100  Identities=20%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.||+.++..|..-|.  +|..+|.........  .+..    +..   ..++++.+++||+|+++.
T Consensus       196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g----~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG----AKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC----cee---cCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999987777  999999863211111  1111    111   125678899999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      ...  +         .+..++.  .+.+....|.+++|+++  ..+|
T Consensus       264 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  297 (386)
T PLN03139        264 PLT--E---------KTRGMFN--KERIAKMKKGVLIVNNARGAIMD  297 (386)
T ss_pred             CCC--H---------HHHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence            321  1         1111221  23444456889999886  3455

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.016  Score=49.10  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCcccc---ccC--CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQ---ALE--DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~e---al~--~aDvVIi  102 (256)
                      +++.|+|++|.+|+.++..|+.+|.  +|+++|.+...  ..++...... .+..- ....++++   .+.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4789999999999999999998887  89999987321  1122211100 01100 00111112   122  4899999


Q ss_pred             ecCCCCC---C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206          103 PAGVPRK---P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      ++|....   +  ..+.   ...+..|+.....+.+.+.++-  ..+.+++++.
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            9987521   1  1122   3345667666556665555432  2345555554

>PRK08589 short chain dehydrogenase; Validated

Probab=96.80  E-value=0.029  Score=49.16  Aligned_cols=115  Identities=19%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-C---cccc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-D---QLGQ-------AL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~e-------al   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++++.+. +.....++.+..  .++..+..+ +   ++.+       .+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  999999872 222233333211  112211110 1   1111       22


Q ss_pred             CCCCEEEEecCCCCCCC---C-CH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRKPG---M-TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~-~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ...|++|++||.....+   + +.   ...+..|+.    +.+.+.+.+.+.  .+.||+++..
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~  142 (272)
T PRK08589         81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF  142 (272)
T ss_pred             CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence            45799999998753211   1 11   223344543    344555555433  3677777643

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0081  Score=52.02  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-C---ccccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------   93 (256)
                      .+++.|+||+|++|.+++..|+..|.  ++++.+...   .......+.+..  .++..+..+ +   ++.++       
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999997  888776542   111112222111  123222211 1   11222       


Q ss_pred             cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~t  145 (256)
                      +...|+||++||.....   ..+   -...+..|+.-...+.+.+.++.   ..+.+++++
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence            23579999999864321   112   23346667665555555555433   234555543

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.049  Score=46.49  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+|++|.+|..++..|+.+|.  +|++++.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346899999999999999999999998  899999874

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.029  Score=49.96  Aligned_cols=115  Identities=24%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-cCCc---cc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------ea   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+.+.  +.....++..   ...+..+. +-+|   +.       +.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999873  2222222321   11121111 0111   11       12


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      +...|+||++||.....   ..+.   ...+..|+.....+++.+.++-  ..+.|+++|.
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            35689999999864311   1111   2335556554444444443321  2456666663

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.035  Score=47.85  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN-D---QLGQAL-------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------   94 (256)
                      +..++.|+||+|.+|..++..|+++|.  ++++.+.+... ....++....  .++..+..+ +   ++.+.+       
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKF   81 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            345899999999999999999999997  88888876421 2223332211  112222211 1   122222       


Q ss_pred             CCCCEEEEecCCCCCCC--C---CHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKPG--M---TRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g--~---~r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~t  145 (256)
                      ...|+||+++|......  .   +-.+.+..|+.....+.+.+.++-  ..+.++++|
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            36799999998643221  1   122345566655444544443321  234555554

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.77  E-value=0.0025  Score=55.41  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+|++|.+|..++..|+.+|.  +|++.|.+.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            345799999999999999999999998  999998863

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.77  E-value=0.018  Score=49.38  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|++|+.++..|+.+|.  +|+++|.+.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            345899999999999999999999998  999998764

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.77  E-value=0.022  Score=49.44  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999998  999999863

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PLN02712 arogenate dehydrogenase

Probab=96.76  E-value=0.0084  Score=59.82  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~a  104 (256)
                      +++||+|||. |.+|.+++..|...|+  +|+.+|.+.....+.+   ..    +..   ..++.+.+. ++|+||++.
T Consensus       368 ~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        368 SKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----CeE---eCCHHHHHhcCCCEEEECC
Confidence            5689999998 9999999999998887  8999998732111111   11    111   124445554 599999985

>PRK08324 short chain dehydrogenase; Validated

Probab=96.76  E-value=0.023  Score=56.86  Aligned_cols=115  Identities=21%  Similarity=0.290  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      ..++|.|+||+|.+|..++..|+.+|.  +|+++|++.  +.....++...   ..+..+..+ +   ++.+++      
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  899999873  22222222221   112211111 1   112222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       .+.|+||+++|......   .+.   ...+..|....    +...+.+++....+.+++++.
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             36899999998643211   111   12344454444    444554444433356666653

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.76  E-value=0.055  Score=45.95  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc------cccccCCCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ------LGQALEDSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d------~~eal~~aDvVI  101 (256)
                      |+|.|+||+|.+|..++..|++++....+.+.+.+....    ..+    .++..+..+ ++      +.+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999999885422666665542211    111    112111110 11      223456899999


Q ss_pred             EecCCCC
Q 025206          102 IPAGVPR  108 (256)
Q Consensus       102 i~ag~~~  108 (256)
                      +++|...
T Consensus        73 ~~aG~~~   79 (235)
T PRK09009         73 NCVGMLH   79 (235)
T ss_pred             ECCcccc
Confidence            9999753

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.014  Score=53.21  Aligned_cols=115  Identities=20%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---ccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~ea-------   93 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++++.+.  +.....++....  ..+..... -+   +++++       
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  899999873  222223333221  11221110 11   11111       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|.+||......   .+   -...+..|+..    .+.+.+.+.+.. .+.+|+++.
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            246899999998643211   11   12334555433    344444454433 356666653

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.0048  Score=52.38  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +++.|+|++|.+|+.++..|+..|.  +|+++|.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999998  999999874

>PLN02928 oxidoreductase family protein

Probab=96.73  E-value=0.0056  Score=56.34  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH--hcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      ....++|+|+|. |.||+.+|..|..-|.  +|+.+|..........+  ................++++.++.||+|++
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence            345579999998 9999999999987787  99999975211111111  000000000000012367789999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +....  +         .+-.++.  .+.+....|.+++|+++
T Consensus       233 ~lPlt--~---------~T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        233 CCTLT--K---------ETAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCCCC--h---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence            86321  1         1111111  23444456889999997

>PRK12743 oxidoreductase; Provisional

Probab=96.72  E-value=0.049  Score=47.09  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------cc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al   94 (256)
                      .++.|+||+|.+|..++..|+.+|.  +|++.+.. .  ......++....  ..+..+..+ ++   +++       .+
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999998  88887543 2  122222332211  122222111 11   111       12


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN  146 (256)
                      ...|++|+++|......   .+   -...+..|+.....+.+.    +.+....+.+|++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            45799999998643211   11   123345565544444443    333333466777765

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.037  Score=48.55  Aligned_cols=35  Identities=29%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +++.+.|+||+|++|.+++..|+.+|.  +|++++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~   43 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF--PVALGARR   43 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            345799999999999999999999998  89888875

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.72  E-value=0.0032  Score=54.52  Aligned_cols=99  Identities=22%  Similarity=0.362  Sum_probs=62.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCcc--EEEEEeCCC----chh-----HHHHHhcccCCCcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~--eV~LiD~~~----~~g-----~~~dl~~~~~~~~v~~~~~t~d~~eal~   95 (256)
                      +.+||.|+|| |..|..++..|...|. +  +|+++|++.    .+.     ...++.+.......     ..++.++++
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~   96 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALK   96 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHh
Confidence            4469999998 9999999999998886 4  799999972    111     11222221100011     125667889


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      ++|++|-+-+    +|.     +.      .+..+.+   +++.+++..+||...
T Consensus        97 ~~dvlIgaT~----~G~-----~~------~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          97 GADVFIGVSR----PGV-----VK------KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             cCCEEEeCCC----CCC-----CC------HHHHHhh---CCCCEEEEeCCCCCc
Confidence            9999998854    233     10      2333333   366777788899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.72  E-value=0.0085  Score=53.02  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +|||+|||. |.+|..++..+...+ -+.-+.++|.+...  ..++.+. ..  ...+   +++++.+.++|+|+++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~-~~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASK-TG--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHh-cC--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            479999998 999999998887754 22235577876321  1222221 11  1222   255566689999999964

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.71  E-value=0.0068  Score=54.07  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||. |.+|.+++..|+..|+  +|.++|+++..  ..++....    ...   +.++.+++++||+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            5798 9999999999999998  99999987422  22333221    111   2355678999999999964

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.041  Score=49.31  Aligned_cols=114  Identities=20%  Similarity=0.356  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-----------CCccccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-----------NDQLGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-----------t~d~~ea   93 (256)
                      ....|.|+||++-+|..+|..++.+|.  .+++.|+++  ....+..+.+..   .++.+.+           ...+++.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e  111 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE  111 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence            456889999988999999999999997  999999994  222233333221   1221211           1124466


Q ss_pred             cCCCCEEEEecCCCC-CCC--CCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPR-KPG--MTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~-~~g--~~r~d---~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..+.|++|..||... ++.  .++.+   .++-|    ..+++.+.+.+.+.+ ++.|+.++.
T Consensus       112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS  173 (300)
T KOG1201|consen  112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIAS  173 (300)
T ss_pred             cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehh
Confidence            789999999999643 322  22222   12333    567788899888765 566665553

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.71  E-value=0.04  Score=47.74  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEe-cCCc---ccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~e-------   92 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  .|++...+..   .....++.+..  .++..+. +-++   +.+       
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999997  7877765421   22222332211  1122111 1111   111       


Q ss_pred             ccCCCCEEEEecCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~---g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .+...|++|+.+|.....   ..+..   ..+..|+.    ..+.+.+.+.+....+.++++|.
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            123579999999864321   11122   23455643    33455666666555566776664

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.043  Score=49.96  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++++.+.  +.....++....  .++..+..+ +|   ++++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999863  222233333211  112211111 11   2222       


Q ss_pred             cCCCCEEEEecCCCCCC--C-CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP--G-MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~--g-~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|+++|.....  . .+..   ..+..|    +...+.+.+.+.+.. .+.+|+++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            34689999999864211  1 1111   223333    344556666665543 356666653

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.015  Score=50.31  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+.+.|+|++|.+|..++..|++.|.  +|++.|.+
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~   41 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLR   41 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            345789999999999999999999998  99999876

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0064  Score=50.59  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |++.|+||+|.+|..++..|+++ .  +|++.+.+.. ....|+.+..   .+.      .+.+.+...|++|.++|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCCC
Confidence            47999999999999999999887 4  8999887531 1112332211   000      01112347899999998643


Q ss_pred             CC---CCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          109 KP---GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       109 ~~---g~~r~d---~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ..   ..+..+   .+..|+.....+.+...++- +.+.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            11   112222   24455544444454444332 345566665

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0042  Score=56.65  Aligned_cols=74  Identities=27%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCC--cEEEEecCCcccc-ccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQ-ALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~e-al~~aDvVIi~a  104 (256)
                      ++||+|+||+|+.|.-+...|..++.+ |+.++...+..|....-.|.....  .++..  +.+..+ ..++||+||.+-
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFlal   78 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLAL   78 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEec
Confidence            679999999999999999999988865 688887664344433333333221  12211  112222 245699999984

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.68  E-value=0.0037  Score=57.33  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|||+ |.+|+.++..|+..|+ .+|.|+|.+
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRD   57 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence            4568999998 9999999999999996 699999987

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.68  E-value=0.0079  Score=54.45  Aligned_cols=100  Identities=22%  Similarity=0.347  Sum_probs=62.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++|+|+|+ |.+|..++..|...+. .+|.++|.+..  ...+..+.     .....   ..++.+.+.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence            4569999998 9999999998887553 48999998732  22222221     11111   124567789999999997


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      +.+..     .       ....+..+.  ...+..+++-+++|-|+
T Consensus       247 ~~~~~-----~-------~~~~~~~~~--~~~~~~~viDlavPrdi  278 (311)
T cd05213         247 GAPHY-----A-------KIVERAMKK--RSGKPRLIVDLAVPRDI  278 (311)
T ss_pred             CCCch-----H-------HHHHHHHhh--CCCCCeEEEEeCCCCCC
Confidence            65521     1       111222111  11245688889999884

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.67  E-value=0.0055  Score=55.88  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=49.7

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |-......++|+|||. |.||+.++..+..-|.  +|..||.........  .+.     ..   ...++.+.++.||+|
T Consensus       135 ~~g~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~~-----~~---~~~~Ld~lL~~sDiv  201 (324)
T COG0111         135 FRGTELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VDG-----VV---GVDSLDELLAEADIL  201 (324)
T ss_pred             cccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--ccc-----ce---ecccHHHHHhhCCEE
Confidence            3333434679999998 9999999999998888  999999842221111  110     11   123577899999999


Q ss_pred             EEec
Q 025206          101 IIPA  104 (256)
Q Consensus       101 Ii~a  104 (256)
                      ++..
T Consensus       202 ~lh~  205 (324)
T COG0111         202 TLHL  205 (324)
T ss_pred             EEcC
Confidence            9975

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.67  E-value=0.0033  Score=57.61  Aligned_cols=72  Identities=18%  Similarity=0.312  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +++||+|+||+|++|.-+...|.++++ ..++.++-..+..|....+..  .  .+...  ..+. ++++++|+||++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~~--~~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRVR--EVDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEEe--eCCh-HHhcCCCEEEEcCC
Confidence            457999999999999999999996554 346767754422232222222  1  12211  1121 24689999999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.66  E-value=0.018  Score=54.72  Aligned_cols=125  Identities=18%  Similarity=0.311  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +.+||.|+|. |..|.+ +|..|...|.  +|.+.|.+... ...+|....    +..+.+. + .+.++++|+||.+.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-D-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-C-HHHCCCCCEEEECCC
Confidence            4468999999 999999 7999999998  99999987432 122344322    2222222 2 345779999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~  163 (256)
                      .|...- ........+++++.+ .+.+.+..++..+|-+|  |==.+++.+++++++..|
T Consensus        76 i~~~~~-~~~~a~~~~i~i~~~-~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         76 IPDDNP-ELVAARELGIPVVRR-AEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             CCCCCH-HHHHHHHCCCcEEeH-HHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            874321 111222334444422 11122222122244454  543444557777888776

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.021  Score=51.22  Aligned_cols=78  Identities=24%  Similarity=0.378  Sum_probs=49.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|...   ......++....  .++..+..+ .+   +.+.      
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~   86 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVG   86 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999998  899998752   222223333211  122222111 11   1111      


Q ss_pred             cCCCCEEEEecCCCC
Q 025206           94 LEDSDVVIIPAGVPR  108 (256)
Q Consensus        94 l~~aDvVIi~ag~~~  108 (256)
                      +...|++|++||...
T Consensus        87 ~g~iD~li~nAG~~~  101 (306)
T PRK07792         87 LGGLDIVVNNAGITR  101 (306)
T ss_pred             hCCCCEEEECCCCCC
Confidence            246899999999754

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.033  Score=49.02  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---cccc------cCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQA------LEDS   97 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~ea------l~~a   97 (256)
                      .+.|+|+ |.+|..++..|. .|.  +|++.|.+.  +.....++.+..  .++..+.. -.+   +.++      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4556676 899999999996 676  999999863  222222332211  11221211 011   1111      2468


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      |++|++||.... ..+..+.+..|+.....+.+.+.+.- +++.+++++..
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~  127 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQ  127 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence            999999997522 23345566777665555555544432 23444555433

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.63  E-value=0.021  Score=48.53  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.+||.|||+ |.||...+..|...|.  +|++++..... ...++.+..   .+........ ++.+.++|+||.+-
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT   78 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAAT   78 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcC
Confidence            4569999999 9999999999998886  99999764222 222333221   2322221222 35789999988874

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.60  E-value=0.0072  Score=58.66  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|+|. |.+|+.+|..|..-|.  +|+.||.........++   .    +..   . ++.+.++.||+|+++
T Consensus       136 ~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~-~l~ell~~aDiV~l~  201 (526)
T PRK13581        136 VELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL---G----VEL---V-SLDELLARADFITLH  201 (526)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---E-cHHHHHhhCCEEEEc
Confidence            3445679999998 9999999999998887  99999975322221111   1    221   1 466889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      .....   ++ ..++  |    .   +.+....|++++|+++  ..+|
T Consensus       202 lP~t~---~t-~~li--~----~---~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        202 TPLTP---ET-RGLI--G----A---EELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             cCCCh---Hh-hcCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence            64321   00 1111  1    1   2333445788888886  3455

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.59  E-value=0.0073  Score=55.43  Aligned_cols=35  Identities=20%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||.|+|+ |.+|+.++..|+..|. .+|.++|.+
T Consensus        23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            4569999998 9999999999999996 699999987

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.59  E-value=0.0044  Score=51.42  Aligned_cols=100  Identities=23%  Similarity=0.432  Sum_probs=62.0

Q ss_pred             cCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCE
Q 025206           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      .+........+|+|+|. |.+|+.+|..+..-|.  +|+.+|.......  ...+..    +.    ..++++.++.||+
T Consensus        28 ~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDi   94 (178)
T PF02826_consen   28 RFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADI   94 (178)
T ss_dssp             TTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SE
T ss_pred             CCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhh
Confidence            34444556689999998 9999999999998888  9999998743222  111111    21    1256788999999


Q ss_pred             EEEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          100 VIIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~-~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |+++... ++..+.     +  |    ++.   +....+++++|+++-
T Consensus        95 v~~~~plt~~T~~l-----i--~----~~~---l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen   95 VSLHLPLTPETRGL-----I--N----AEF---LAKMKPGAVLVNVAR  128 (178)
T ss_dssp             EEE-SSSSTTTTTS-----B--S----HHH---HHTSTTTEEEEESSS
T ss_pred             hhhhhcccccccee-----e--e----eee---eeccccceEEEeccc
Confidence            9998642 222221     1  1    122   233457889999874

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.58  E-value=0.019  Score=49.14  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      ++|.|+||+|.+|+.++..|+.+|.  +|++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            4799999999999999999999997  7877654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.58  E-value=0.012  Score=53.66  Aligned_cols=99  Identities=23%  Similarity=0.460  Sum_probs=62.3

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++++|+|. |.||+.+|..+..-|.  +|..+|..+......++.       .+ +.   ++.+.++.||+|++.+
T Consensus       143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~~-------~~-y~---~l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKELG-------AR-YV---DLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhcC-------ce-ec---cHHHHHHhCCEEEEeC
Confidence            445679999998 9999999999984455  999999875311111111       11 11   3568899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~  150 (256)
                      ...  + +        |-.++-  .+.+++..|.+++||++=  =+|.
T Consensus       209 Plt--~-~--------T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe  243 (324)
T COG1052         209 PLT--P-E--------TRHLIN--AEELAKMKPGAILVNTARGGLVDE  243 (324)
T ss_pred             CCC--h-H--------HhhhcC--HHHHHhCCCCeEEEECCCccccCH
Confidence            321  1 1        111111  123444568899999873  3563

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.58  E-value=0.0069  Score=54.28  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ...+|+|+|+ |.+|..++..|...|.  +|+++|++....  .......    ..... ..++.+.++++|+||.+.
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG----LIPFP-LNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Ceeec-HHHHHHHhccCCEEEECC
Confidence            4569999998 9999999999998887  999999863211  1111111    11111 124567889999999985

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.14  Score=43.85  Aligned_cols=115  Identities=10%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe-c---CCccc-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLG-------QAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~-~---t~d~~-------eal   94 (256)
                      .+.+.|+||++.+|..++..|+++|.  +|++++.+.  ++....++....  .++..+. +   ..+++       +.+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999998  899998873  222222232211  1121111 0   11111       123


Q ss_pred             C-CCCEEEEecCCCCCCC----CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 E-DSDVVIIPAGVPRKPG----MTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~-~aDvVIi~ag~~~~~g----~~r~d---~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      . ..|++|.++|....++    .+..+   .+..|.    ...+.+.+.+.+....+.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            4 6899999997432211    12222   222332    334455666665544567777764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.56  E-value=0.015  Score=55.00  Aligned_cols=126  Identities=24%  Similarity=0.331  Sum_probs=70.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH---HHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +.++|.|+|+ |.+|..+|..|+..|.  +|+++|.+.....   ..++...    .++.+.+.. ..+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEEC
Confidence            3468999998 8899999999999998  9999998742111   2223211    122222221 12345789999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~  163 (256)
                      +|.+.... .....-+.+++++......... .+ ..+|-+|-..  .+++.+++.+++..|
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            88642211 1111123345555443332222 22 3355555443  344446667776654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.54  E-value=0.02  Score=56.77  Aligned_cols=138  Identities=13%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcc----ccccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~eal~~aDvVIi~  103 (256)
                      ..+|.|+|. |.+|+.++..|..+++  +++++|.|+..  +..+.+...+ -+.+  +.++.    +..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~-v~~G--Dat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGMK-VFYG--DATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCCe-EEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence            368999998 9999999999999998  99999998422  2222222211 1111  11221    1346799999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t-NPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      -..+           +.|.    .++..+++..|+..++.-+ |+..      .+.+++.|   .+.++--+...+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence            4221           2343    3455666678887665544 4433      23444444   4455544555566777


Q ss_pred             HHHHHHcCCCCCcee
Q 025206          183 TFYAGKANVNVAEVN  197 (256)
Q Consensus       183 ~~la~~l~v~~~~v~  197 (256)
                      +.+-+.+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (621)
T PRK03562        528 RLVLESLGLGPYEAR  542 (621)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            777788999887764

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.54  E-value=0.0014  Score=60.75  Aligned_cols=72  Identities=26%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEEec
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi~a  104 (256)
                      |.|+|+ |++|+.++..|++.+...+|++.|.+..+  .....+.    ..++....    ...++.+.++++|+||.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL----GDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T----TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc----ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 99999999999988865699999998422  2211111    11222221    1123567889999999998


Q ss_pred             CCC
Q 025206          105 GVP  107 (256)
Q Consensus       105 g~~  107 (256)
                      |..
T Consensus        76 gp~   78 (386)
T PF03435_consen   76 GPF   78 (386)
T ss_dssp             SGG
T ss_pred             ccc
Confidence            643

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.53  E-value=0.01  Score=50.50  Aligned_cols=107  Identities=20%  Similarity=0.206  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVIi~  103 (256)
                      +++.|+|++|.+|.+++..|+++|.  +|++.|.+....    ..     .++..+..+     ..+.+.+...|++|++
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~   74 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT   74 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence            5799999999999999999999998  899998863211    00     011111110     0112235678999999


Q ss_pred             cCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206          104 AGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~--~~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +|...  .+  ..+.   ...+..|+.....+.+.+.+.   .+.+.+++++.
T Consensus        75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            98542  11  1122   234556655444444444322   23356666653

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.52  E-value=0.022  Score=45.28  Aligned_cols=32  Identities=28%  Similarity=0.614  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ||.|+|+ |.+|+.++..|+..|. .++.++|.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            6899998 9999999999999997 689999976

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.51  E-value=0.012  Score=53.07  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ...|++|+|+ |.+|..++..|...|.  +|..+|++....  ........  ...   ...++.+.++++|+||.+.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~--~~~~~~G~--~~~---~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHL--ARITEMGL--SPF---HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHcCC--eee---cHHHHHHHhCCCCEEEECC
Confidence            4569999998 9999999999998886  999999873211  11111111  111   1124567889999999985

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.49  E-value=0.057  Score=46.09  Aligned_cols=35  Identities=29%  Similarity=0.558  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..++.|+|++|.+|..++..|+.+|.  +|+++|.+.
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999997  899999873

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.48  E-value=0.048  Score=46.27  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccccC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQALE   95 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal~   95 (256)
                      .+.|+||+|.+|..++..|+..|.  +++++.. +.  ......++....  .++..+..+ ++   +       .+.+.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG   77 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999998  8888776 32  111111222111  112222111 11   1       12234


Q ss_pred             CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 025206           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ..|+||+++|.....   ..+   ..+.+..|..-...    +.+.+++. +.+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~  138 (242)
T TIGR01829        78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV  138 (242)
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            689999999864321   111   23345556554333    44444443 33466666643

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.48  E-value=0.017  Score=52.40  Aligned_cols=65  Identities=15%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .+||+|||+ |.+|.+++..|...|+  ++++.+....... ..+.+..    ++.   . +..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999997  7766554321111 1111111    221   2 3457889999999986

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.029  Score=55.40  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-----
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-----   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-----   94 (256)
                      .+.+++.|+||+|.+|..++..|+.+|.  +|++++.+.  +.....++....  .++..+..+ .   ++++++     
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  999999873  222222332211  122222111 1   122222     


Q ss_pred             --CCCCEEEEecCCCCCCC--------CCHHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG--------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g--------~~r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......        ++....+..|+...    +.+.+.+.+. ..+.+|++|.
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence              36899999998642111        11223345565443    4444444443 3456666653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.47  E-value=0.02  Score=54.81  Aligned_cols=135  Identities=17%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             cccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH-hcccCCCcEEEEecCCcccc
Q 025206           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl-~~~~~~~~v~~~~~t~d~~e   92 (256)
                      .|+-|+.++...    ||.|+|. |..|.+++..|...|.  +|.++|.+....  .++ ...    .++.+.+..+ .+
T Consensus         5 ~~~~~~~~~~~~----~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~   70 (473)
T PRK00141          5 VPLSALPQELSG----RVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SD   70 (473)
T ss_pred             ChhhhcccccCC----eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hh
Confidence            466666665544    8999998 9999999999999998  999999753211  122 221    1333332222 24


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMIS--NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-----~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~  163 (256)
                      .+.++|+||.+.|.|...- ........+++++.++.-....     +.....+|-+|  |==.+++.+++.+++..|
T Consensus        71 ~~~~~d~vV~Spgi~~~~p-~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         71 QLDSFSLVVTSPGWRPDSP-LLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HhcCCCEEEeCCCCCCCCH-HHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            5789999999988874321 1222233455555544432221     22122344555  433344556777787765

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.47  E-value=0.044  Score=46.56  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..+|.|+||+|++|+.++..|++.|.  +|++++.+.
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  999998863

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.46  E-value=0.0056  Score=56.32  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++||+|+||+|++|..+...|..+++ ..++.++...+..|...+...    ..+...  ..+ .++++++|+||+++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence            3567999999999999999999988654 347766654432222222211    112211  112 24678999999987


Q ss_pred             CC
Q 025206          105 GV  106 (256)
Q Consensus       105 g~  106 (256)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            63

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.46  E-value=0.036  Score=48.05  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999998  899999873

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.45  E-value=0.056  Score=46.17  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD   61 (256)
                      +.+.|+|++|.+|..++..|+..|.  ++++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            4689999999999999999999997  777753

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.43  E-value=0.013  Score=55.97  Aligned_cols=92  Identities=21%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ....+|+|+|. |.||..+|..+...|.  +|+.+|+++...... ..+ .    .+    ..++.++++.+|+||.+.|
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A-~~~-G----~~----~~~leell~~ADIVI~atG  318 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQA-AME-G----YQ----VVTLEDVVETADIFVTATG  318 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHH-Hhc-C----ce----eccHHHHHhcCCEEEECCC
Confidence            34569999998 9999999999998887  899998874322110 111 1    11    1145678999999999865


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      .+               .++.  .+.+....|.+++++++-.
T Consensus       319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            32               1111  1234444688999999854

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.43  E-value=0.022  Score=52.27  Aligned_cols=33  Identities=33%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEE-EEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYD   61 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV-~LiD   61 (256)
                      ++||+|+||+|++|..++..|...+.. ++ .+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence            479999999999999999988877543 55 4556

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.43  E-value=0.0054  Score=56.21  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=46.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .+.+||+|+||+|++|..+...|.++.+ ..+|.++-..+..|....+..  .  .+.+.. . + +.++.++|+||+++
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~--~--~~~v~~-~-~-~~~~~~~Dvvf~a~   74 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG--K--SVTVQD-A-A-EFDWSQAQLAFFVA   74 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC--c--ceEEEe-C-c-hhhccCCCEEEECC
Confidence            3567999999999999999999998533 348888855432233222221  1  222211 1 1 23457899999987


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      +
T Consensus        75 p   75 (336)
T PRK08040         75 G   75 (336)
T ss_pred             C
Confidence            5

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.40  E-value=0.019  Score=54.45  Aligned_cols=126  Identities=22%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hH-HHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~-~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+||+|+|. |.-|.+++..|...|.  +|..+|.++.. .. ...+..    ..+....+..+. +...++|+||..-|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~~~----~~i~~~~g~~~~-~~~~~~d~vV~SPG   78 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPLLL----EGIEVELGSHDD-EDLAEFDLVVKSPG   78 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhhhc----cCceeecCccch-hccccCCEEEECCC
Confidence            579999998 9999999999999997  99999987432 11 111111    123333333333 67899999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCCchHHHHHHHHHhC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~--tNPvd~~~~i~~~~~~~~~  163 (256)
                      .|...-. -.......++++-++--..+... ++.+|-+  ||==..+|.+++++++..|
T Consensus        79 i~~~~p~-v~~A~~~gi~i~~dieL~~r~~~-~~p~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          79 IPPTHPL-VEAAKAAGIEIIGDIELFYRLSG-EAPIVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCCCHH-HHHHHHcCCcEEeHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            7643210 11122344555555554444331 1113334  4655556668888888877

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.40  E-value=0.035  Score=42.84  Aligned_cols=100  Identities=21%  Similarity=0.252  Sum_probs=51.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCCchhHHHHHhcccCCCc-EEEEecCCccccccCCCCEEEEecCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVGHINTRSE-VAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~~~g~~~dl~~~~~~~~-v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      ||+|+|++|.+|..++..|...+.+ ++..+ +.++..+......+...... ...+. ..+++  ..++|+||++.+..
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~~~   76 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALPHG   76 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCCcH
Confidence            6899998799999998888885433 55544 65432222111122111100 01110 12322  25899999985321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVN  149 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~~~iiv~tNPvd  149 (256)
                               .       ..++++.+.+ ..++.++|-.|++..
T Consensus        77 ---------~-------~~~~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       77 ---------V-------SKEIAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             ---------H-------HHHHHHHHHhhhcCCCEEEECCcccc
Confidence                     1       1122222222 346778877777654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.11  Score=44.94  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c---ccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L---GQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~---~eal~~a   97 (256)
                      +.+++.|+|++|.+|..++..|+..|.  +|++.+.+.  ......++.... ..++..+..+ ++   +   .+.+...
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i   82 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI   82 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence            346899999999999999999999998  999999873  222222232211 1112222111 11   1   1234579


Q ss_pred             CEEEEecCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           98 DVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~-~--g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++|+++|.... +  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.++++|.
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            999999986421 1  1122   223455544    3444555554432 346666653

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.38  E-value=0.039  Score=52.14  Aligned_cols=117  Identities=20%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCcccc-------ccCCCCE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQ-------ALEDSDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~e-------al~~aDv   99 (256)
                      ..++.|+|++|.+|..++..|+.+|.  +|+++|.........++.+......+..-. ...++++       .....|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            45899999999999999999999998  899998753222222222110000111100 0011111       1236899


Q ss_pred             EEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206          100 VIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ||+++|.....   ..+   ....+..|+.-...+.+.+.+.   .+.+.++++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999865321   112   2234566766666666666542   24467777763

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.37  E-value=0.011  Score=53.03  Aligned_cols=68  Identities=24%  Similarity=0.412  Sum_probs=52.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      .++|+.||- |.+|++.+..|+..|+  .|+.||+++  ..+.++.+....  +.     ..+.|..++||+||.+.+.|
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga~--v~-----~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGAR--VA-----NSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhchh--hh-----CCHHHHHhhcCEEEEEcCCh
Confidence            579999998 9999999999999999  999999874  334566654422  11     13467889999999997754

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.37  E-value=0.013  Score=51.26  Aligned_cols=35  Identities=23%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||.|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus        23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            4569999998 9999999999999985 699999987

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=96.36  E-value=0.012  Score=51.07  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHH----hccc--------CCCcEEEEecCC----------c
Q 025206           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADV----GHIN--------TRSEVAGYMGND----------Q   89 (256)
Q Consensus        33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl----~~~~--------~~~~v~~~~~t~----------d   89 (256)
                      |+||+||+|+++...|+..+...+|+++-+.+.. .....+    .+..        ...+++...++-          +
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6899999999999988877652278887654311 111111    1100        123566554321          1


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.+..+.+|+||++|+.-. -..+..++...|+.-++++++...+.... .++.+|
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iS  134 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIS  134 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEec
Confidence            2233478999999987532 11234446778999999999988754433 455555

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.36  E-value=0.037  Score=48.70  Aligned_cols=67  Identities=34%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++||+|+|++|.+|+.++..+...+-+ +++ ++|.+.......  ..  .  .+..   ..++.+.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~-elvav~d~~~~~~~~~--~~--~--~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDL-ELVAAVDRPGSPLVGQ--GA--L--GVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCcccccc--CC--C--Cccc---cCCHHHhccCCCEEEECC
Confidence            479999998799999999887764323 544 477763211101  11  1  1211   346667778899999664

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.36  E-value=0.0059  Score=56.14  Aligned_cols=72  Identities=22%  Similarity=0.363  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHc-CCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKL-NPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~-~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.+||+|+||+|++|+.+...|.. ..+ ..++.++...+..|+...+...    .+.+..  .+ .+.++++|+||+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEEECC
Confidence            347999999999999999999985 444 3458888665433333322211    232221  23 24568999999987


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      +
T Consensus        77 ~   77 (347)
T PRK06728         77 G   77 (347)
T ss_pred             C
Confidence            5

>PRK13529 malate dehydrogenase; Provisional

Probab=96.36  E-value=0.011  Score=57.19  Aligned_cols=110  Identities=23%  Similarity=0.354  Sum_probs=72.7

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHc----CCCc-----cEEEEEeCCCc----h----hHHHHHhcccCCCcEEEE-
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT----P----GVAADVGHINTRSEVAGY-   84 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~----~~~~-----~eV~LiD~~~~----~----g~~~dl~~~~~~~~v~~~-   84 (256)
                      .+..+..||.+.|| |..|..+|..|..    .|+-     ..++++|.+-+    .    .....+.+..  ..+... 
T Consensus       290 g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~  366 (563)
T PRK13529        290 GEPLSDQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWD  366 (563)
T ss_pred             CCChhhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccc
Confidence            33444569999998 9999999988775    5762     48999998721    1    1111122111  111000 


Q ss_pred             --ecCCccccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           85 --MGNDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        85 --~~t~d~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                        ....++.++++++  |+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..
T Consensus       367 ~~~~~~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        367 TEGDVISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             cccCCCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence              0124678999998  8887665443   2           124788899999999999999999986

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.049  Score=46.54  Aligned_cols=32  Identities=28%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.|+|++|++|+.++..|+.+|.  .|++.+.+
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~   35 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLR   35 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCC
Confidence            589999999999999999999987  78877654

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.34  E-value=0.012  Score=49.71  Aligned_cols=77  Identities=22%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      ....++|+|||-+.-||.+++..|++++-  .|.+.|++.  .......+.|...+  ...  .+.++.+.++.||+||.
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~--~~~~l~~~~~~ADIVIs  132 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTD--EEAMTLDCLSQSDVVIT  132 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccc--hhhHHHHHhhhCCEEEE
Confidence            44567999999999999999999998886  999999863  11000111221110  000  01125678899999999


Q ss_pred             ecCCC
Q 025206          103 PAGVP  107 (256)
Q Consensus       103 ~ag~~  107 (256)
                      ++|.|
T Consensus       133 AvG~~  137 (197)
T cd01079         133 GVPSP  137 (197)
T ss_pred             ccCCC
Confidence            99876

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.34  E-value=0.017  Score=53.58  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEE-EecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+.||+|+|+ |.+|...+..+...|.  +|..+|.+..+.  ..+.... ...+.. .....++.+.++++|+||.+++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            4568999998 9999999999998887  899999873221  1111110 011111 1111245677899999999976


Q ss_pred             CC
Q 025206          106 VP  107 (256)
Q Consensus       106 ~~  107 (256)
                      .|
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            54

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.34  E-value=0.051  Score=46.32  Aligned_cols=70  Identities=17%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ..||.|||+ |.+|..-+..|+..|-  +|++++.+.. ....++.+..   ++....+.+. .+.++++|+||.+-+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            459999999 9999999999998887  9999987532 2223333221   3444333433 457899999988743

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.33  E-value=0.013  Score=51.31  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|+|+ |.+|+.++..|+..|. .++.++|.+
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence            4569999998 9999999999999985 699999987

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.31  E-value=0.0089  Score=54.50  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             hhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEe
Q 025206            8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM   85 (256)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~   85 (256)
                      .++|-|--+-+-+++... ...+++|||+ |..|...+..+.....+.+|.++|++.  ++..+.++.+.  ...+..  
T Consensus       109 ~~RTaA~salaa~~La~~-~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~--  182 (325)
T TIGR02371       109 DMRTGAAGGVAAKYLARK-DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA--  182 (325)
T ss_pred             hHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE--
Confidence            344433333333344433 3568999998 999998666555444467999999984  23333334321  112332  


Q ss_pred             cCCccccccCCCCEEEEec
Q 025206           86 GNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        86 ~t~d~~eal~~aDvVIi~a  104 (256)
                       ..+.++++++||+|+.+-
T Consensus       183 -~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       183 -ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             -eCCHHHHhccCCEEEEec
Confidence             236678999999999874

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08017 oxidoreductase; Provisional

Probab=96.28  E-value=0.04  Score=47.31  Aligned_cols=32  Identities=28%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +|.|+||+|.+|..++..|+++|.  +|++++.+
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~   35 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRK   35 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence            699999999999999999999997  89998876

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.28  E-value=0.025  Score=53.24  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+ ..+..+   .+    ..    .+++++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G~----~~----~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---GY----EV----MTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---CC----EE----ccHHHHHcCCCEEEECCC
Confidence            3469999998 9999999999998887  89999987432 112211   11    11    123467889999999875


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      .+               .++..  ..+....+.+++++++.+
T Consensus       267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            32               11111  113333578899999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.28  E-value=0.0095  Score=55.46  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.||+.++..|..-|.  +|..+|..+...     .. .    ..    -.++++.++.||+|++...
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~-----~~-~----~~----~~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR-----GD-E----GD----FRSLDELVQEADILTFHTP  176 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-c----cc----cCCHHHHHhhCCEEEEeCC
Confidence            35569999998 9999999999998888  999999642210     00 0    00    1256778899999998754

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.27  E-value=0.012  Score=53.15  Aligned_cols=96  Identities=20%  Similarity=0.342  Sum_probs=61.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|+|. |.+|+.+|..+..-|.  +|+.+|.....       + .    ....  ..++++.++.||+|+++.
T Consensus       119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~----~~~~--~~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        119 LLYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G----ISSI--YMEPEDIMKKSDFVLISL  181 (303)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C----cccc--cCCHHHHHhhCCEEEECC
Confidence            345579999998 9999999998877787  99999975211       0 0    0000  125678899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~  150 (256)
                      ...  + +++ .++  |       .+.+....|.+++|+++  .++|.
T Consensus       182 p~t--~-~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        182 PLT--D-ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             CCC--c-hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence            322  1 111 111  1       22333445789999997  56774

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.26  E-value=0.0086  Score=54.10  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcE
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v   81 (256)
                      .|-.++|-|--+-+-+++... ...+|+|+|+ |..|...+..+.. .+. .+|.++|.+.  +...+.++.+..  ..+
T Consensus       103 ~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~~--~~~  177 (304)
T PRK07340        103 TVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARALG--PTA  177 (304)
T ss_pred             hHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcC--Cee
Confidence            344555555444444555443 4469999998 9999998887764 453 6899999983  333444443211  112


Q ss_pred             EEEecCCccccccCCCCEEEEecC
Q 025206           82 AGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        82 ~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .    ..++++++.+||+||.+-.
T Consensus       178 ~----~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        178 E----PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             E----ECCHHHHhhcCCEEEEccC
Confidence            2    1356778999999998743

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.24  E-value=0.016  Score=47.51  Aligned_cols=57  Identities=25%  Similarity=0.471  Sum_probs=41.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+.++|+|||.+..||.+++..|..++-  .|.+.+.+                       +.++++.++.||+||.++|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            3456999999988999999999999886  77776542                       2245567899999999988


Q ss_pred             CC
Q 025206          106 VP  107 (256)
Q Consensus       106 ~~  107 (256)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            66

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.24  E-value=0.21  Score=43.23  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      +.+++.|+||++.+|..++..|+..|.  +|++.+.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            446899999999999999999999998  8888754

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.23  E-value=0.0069  Score=52.32  Aligned_cols=35  Identities=34%  Similarity=0.582  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|+|+ |.+|+.++..|+..|. .+++++|-+
T Consensus        20 ~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence            4569999998 9999999999999996 699999976

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.20  E-value=0.013  Score=52.90  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ..++|+|||.+|.||.+++..|...|.  .|.+++...                       .++++.++.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            456999999966999999999999998  899886531                       1345678999999999886


Q ss_pred             C
Q 025206          107 P  107 (256)
Q Consensus       107 ~  107 (256)
                      +
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            5

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.20  E-value=0.014  Score=56.78  Aligned_cols=107  Identities=24%  Similarity=0.334  Sum_probs=70.7

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHc-----CCC-----ccEEEEEeCCCc--hhHHHH-Hhcc--cCCCcEEEEecC
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKL-----NPL-----VSRLALYDIANT--PGVAAD-VGHI--NTRSEVAGYMGN   87 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~-----~~~-----~~eV~LiD~~~~--~g~~~d-l~~~--~~~~~v~~~~~t   87 (256)
                      .+..+..||.+.|| |..|..++..|..     .|+     -..++++|.+-+  .+. .| |.+.  .+-....   ..
T Consensus       316 g~~l~d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r-~~~l~~~k~~fa~~~~---~~  390 (581)
T PLN03129        316 GGDLADQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR-KDSLQPFKKPFAHDHE---PG  390 (581)
T ss_pred             CCchhhceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC-CccChHHHHHHHhhcc---cC
Confidence            34445569999998 9999999988765     365     148999998721  110 01 1110  0000111   12


Q ss_pred             CccccccCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           88 DQLGQALED--SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        88 ~d~~eal~~--aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      .++.+++++  +|+.|=+.+.+   |           -+.+++++.|.+++++.+|.-.|||.
T Consensus       391 ~~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        391 ASLLEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             CCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            478899999  89888765443   2           12468888999999999999999997

>PRK08223 hypothetical protein; Validated

Probab=96.18  E-value=0.011  Score=52.83  Aligned_cols=35  Identities=23%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||.|+|+ |-+|+.++..|+..|. .++.|+|-+
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFD   60 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence            4569999998 9999999999999996 699999987

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.17  E-value=0.01  Score=53.60  Aligned_cols=94  Identities=17%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             hhhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcE
Q 025206            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (256)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v   81 (256)
                      ..+-.++|-|--+-+.+++.  ....+++|||+ |..|...+..+..-..+.+|.++|++.  +...+.++.+. ...++
T Consensus        95 ~~lT~~RTaA~salaa~~l~--~da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v  170 (301)
T PRK06407         95 NRLGQIRTGAVTAYATSILH--KNVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDI  170 (301)
T ss_pred             chHHHHHHHHHHHHHHHHhh--cCCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcE
Confidence            34555566444443444553  25679999998 999887766665544468999999984  34444445432 12234


Q ss_pred             EEEecCCccccccCCCCEEEEec
Q 025206           82 AGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        82 ~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..   ..+.++++++||+|+.+-
T Consensus       171 ~~---~~~~~eav~~aDIV~taT  190 (301)
T PRK06407        171 RP---VDNAEAALRDADTITSIT  190 (301)
T ss_pred             EE---eCCHHHHHhcCCEEEEec
Confidence            43   236788999999999763

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.17  E-value=0.037  Score=52.49  Aligned_cols=125  Identities=19%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             eEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        30 KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      +|.++|. |..|.+ +|..|...|.  +|...|.+... ...+|+...    ++.+.+ .+ .+.++++|+||.+.|.|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            4789998 989997 9999999998  99999976432 223344322    333333 23 345788999999988874


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhCCCCC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ..- ........+++++.+. +.+.+...+..+|-+|  |==.+++.+++.+++..| +++
T Consensus        71 ~~p-~~~~a~~~~i~v~~~~-el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~  128 (448)
T TIGR01082        71 DNP-EIVEAKERGIPVIRRA-EMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDP  128 (448)
T ss_pred             CCH-HHHHHHHcCCceEeHH-HHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCC
Confidence            221 1112223344444221 1122222122244444  543444557777887776 533

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.15  E-value=0.026  Score=51.42  Aligned_cols=95  Identities=20%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++|+|||. |.||..++..+. .-|.  +|..+|.........++   .    .+ +   .++.+.++.||+|++.
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~---~----~~-~---~~l~ell~~sDvv~lh  207 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF---N----AR-Y---CDLDTLLQESDFVCII  207 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc---C----cE-e---cCHHHHHHhCCEEEEe
Confidence            345679999998 999999999886 5566  88888865211111111   1    11 1   2567889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ....  + +        +-.++-  .+.+....|++++||++-
T Consensus       208 ~plt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        208 LPLT--D-E--------THHLFG--AEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             CCCC--h-H--------HhhccC--HHHHhcCCCCeEEEECCC
Confidence            5321  1 1        111110  123334468999999973

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.14  E-value=0.024  Score=53.42  Aligned_cols=68  Identities=26%  Similarity=0.355  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Cccccc-cCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQA-LEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~ea-l~~aDvVIi~  103 (256)
                      |||.|+|+ |.+|..++..|..+|+  +++++|.+...  ...+.+..   .+....+.    ..++++ +.++|.||++
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            58999998 9999999999999888  99999987422  11122100   01111111    123344 7899999998


Q ss_pred             c
Q 025206          104 A  104 (256)
Q Consensus       104 a  104 (256)
                      .
T Consensus        73 ~   73 (453)
T PRK09496         73 T   73 (453)
T ss_pred             c
Confidence            5

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.14  E-value=0.032  Score=52.72  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ...+|+|+|. |.+|..++..+...|.  +|+++|+++.+.... ..+ .    .+.    .++.++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G----~~v----~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G----FRV----MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C----CEe----cCHHHHHhCCCEEEECCCC
Confidence            4468999998 9999999999998887  899999874322111 011 1    111    1345778999999987643


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      +               .++.  .+.+....+.+++++++-+
T Consensus       278 ~---------------~vI~--~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        278 K---------------DVIT--AEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             H---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence            2               1121  1223333567899988743

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.13  E-value=0.021  Score=46.65  Aligned_cols=67  Identities=10%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +..+|.|+|| |.||...+..|+..|.  +|++++..... ...++.      .+........ ++.++++|+||.+-
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence            4569999999 9999999999999998  99999754222 222221      1221111222 35689999998873

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.13  E-value=0.011  Score=55.07  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ..++|+|||. |.||+.++..+..-|.  +|..+|..+...     .. .    ..    -.++++.++.||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-~----~~----~~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-D----GD----FVSLERILEECDVISLHTP  176 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-C----cc----ccCHHHHHhhCCEEEEeCc
Confidence            4569999998 9999999999998888  999999753210     00 0    11    1246678899999999854

>PLN02306 hydroxypyruvate reductase

Probab=96.12  E-value=0.036  Score=51.80  Aligned_cols=104  Identities=20%  Similarity=0.286  Sum_probs=60.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHH---HHHhc---ccCCCcEEEEecCCccccccCCC
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVA---ADVGH---INTRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~---~dl~~---~~~~~~v~~~~~t~d~~eal~~a   97 (256)
                      ....++|+|+|. |.||+.+|..+. .-|.  +|..||........   .....   ......... ....++++.++.|
T Consensus       162 ~L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~s  237 (386)
T PLN02306        162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREA  237 (386)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhC
Confidence            345679999998 999999999875 5566  99999976321110   01100   000000110 0123678899999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+|++.....  + +        +-.++.  .+.++...|++++|+++
T Consensus       238 DiV~lh~Plt--~-~--------T~~lin--~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        238 DVISLHPVLD--K-T--------TYHLIN--KERLALMKKEAVLVNAS  272 (386)
T ss_pred             CEEEEeCCCC--h-h--------hhhhcC--HHHHHhCCCCeEEEECC
Confidence            9999975321  1 1        111111  12333445789999997

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.11  E-value=0.016  Score=54.64  Aligned_cols=101  Identities=19%  Similarity=0.309  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ...+|+|+|+ |.+|..++..|...|. .+|+++|.+..  ...+..+..     .  ... ..++.+++.++|+||.+.
T Consensus       179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----~--~i~-~~~l~~~l~~aDvVi~aT  248 (417)
T TIGR01035       179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----E--AVK-FEDLEEYLAEADIVISST  248 (417)
T ss_pred             cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----e--Eee-HHHHHHHHhhCCEEEECC
Confidence            3469999998 9999999999988773 48999998732  222222211     1  111 125567889999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~  150 (256)
                      +.+..- .+            .+.++...... ...+++-+++|-|+
T Consensus       249 ~s~~~i-i~------------~e~l~~~~~~~~~~~~viDla~Prdi  282 (417)
T TIGR01035       249 GAPHPI-VS------------KEDVERALRERTRPLFIIDIAVPRDV  282 (417)
T ss_pred             CCCCce-Ec------------HHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            654211 11            11222221111 24588888999874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.11  E-value=0.055  Score=46.07  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4789999999999999999999998  999998864

>PRK06484 short chain dehydrogenase; Validated

Probab=96.09  E-value=0.024  Score=54.37  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEe-cCCccccc-------cCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~~ea-------l~~a   97 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|.+..  ......+.. .. ..+..-. ...++.+.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGD-EH-LSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ce-eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35789999999999999999999997  9999998731  111111111 00 0011000 00111122       2457


Q ss_pred             CEEEEecCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 025206           98 DVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (256)
Q Consensus        98 DvVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPv  148 (256)
                      |++|++||...  .+  ..+   ....+..|+.....+.+.+.++ ...+.||++|...
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99999998742  11  112   2234556655544444444333 2346777777543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.09  E-value=0.041  Score=51.69  Aligned_cols=66  Identities=18%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|.++.+.... ..+ .+    ..    .+++++++++|+||.+.|
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G~----~v----~~leeal~~aDVVItaTG  259 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-GF----RV----MTMEEAAKIGDIFITATG  259 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-CC----Ee----CCHHHHHhcCCEEEECCC
Confidence            4569999998 9999999999998887  899999875321111 111 11    11    123567899999998754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.09  E-value=0.0068  Score=54.98  Aligned_cols=90  Identities=21%  Similarity=0.304  Sum_probs=52.9

Q ss_pred             hhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (256)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~   82 (256)
                      |-.++|-|--+-+-+++... +..+++|+|+ |..+...+..+.. .+ +.+|.++|++.  ++..+.++.+  ....+.
T Consensus       107 lT~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~--~~~~v~  181 (313)
T PF02423_consen  107 LTALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD--LGVPVV  181 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC--CCTCEE
T ss_pred             hhhhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc--ccccce
Confidence            33444544444444555443 4458999998 9998876665544 55 78999999984  4455566666  222344


Q ss_pred             EEecCCccccccCCCCEEEEe
Q 025206           83 GYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        83 ~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .   ..+.++++++||+|+.+
T Consensus       182 ~---~~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  182 A---VDSAEEAVRGADIIVTA  199 (313)
T ss_dssp             E---ESSHHHHHTTSSEEEE-
T ss_pred             e---ccchhhhcccCCEEEEc
Confidence            3   24678999999998876

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.06  E-value=0.13  Score=44.76  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=28.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      +.+.|+||+|.+|..++..|+++|.  +|++.+.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~   33 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH   33 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence            3688999999999999999999998  8888754

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.05  E-value=0.019  Score=52.38  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++|+|+|+ |..|...+..+....-+.+|.++|++.  ++..+.++.+. ....+..   ..++++++++||+||.+.
T Consensus       131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEee
Confidence            4468999998 999988777776432256999999874  33333434321 1112222   246678899999998874


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      .
T Consensus       206 ~  206 (330)
T PRK08291        206 P  206 (330)
T ss_pred             C
Confidence            3

>PRK05599 hypothetical protein; Provisional

Probab=96.05  E-value=0.29  Score=42.19  Aligned_cols=117  Identities=12%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc----------cccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~eal~   95 (256)
                      |.+.|+||++.+|..++..|+ +|.  .|++.+.+.  ++....++...... .+..+.. -.|          +.+...
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            358899999999999999998 475  899998763  33333444322110 1211110 011          112235


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ..|++|+++|......   .+   ..+....|.    ...+.+.+.+.+...++.|+++|.-..
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~  140 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG  140 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            6899999998743211   11   112223332    333445566655444577777775443

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.04  E-value=0.22  Score=42.97  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .++|.|+||+|  .+|..++..|+.+|.  +|++.+.+
T Consensus         5 ~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~   40 (256)
T PRK12748          5 KKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS   40 (256)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence            35799999974  699999999999997  89999865

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.03  E-value=0.014  Score=53.12  Aligned_cols=73  Identities=14%  Similarity=0.261  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ...+++|||+ |..|...+..+....-+.+|.++|.++  +...+.++.+. +...+..+   .++++++.++|+||.+-
T Consensus       126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVT  200 (325)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEcc
Confidence            3458999998 999987776655333357999999884  23333333321 12223322   35678899999999874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.01  E-value=0.042  Score=52.27  Aligned_cols=124  Identities=22%  Similarity=0.301  Sum_probs=72.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .||.|+|. |..|.+++..|...|.  +|.+.|.++.   .....++....    +..+.+. +..+.+.++|+||.+.|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~-~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKELG----VKLVLGE-NYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhCC----CEEEeCC-CChHHhccCCEEEECCC
Confidence            48999998 9999999999999998  9999998642   11112243322    3333322 22345789999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~  163 (256)
                      .+...- ......+.+++++.++- .+.+..+ ..+|-+|-..  .+++.+++.+++..+
T Consensus        87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~~-~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYCP-AKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CCCCch-HHHHHHHcCCcEEechH-HhhhhcC-CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            764321 12222345566655442 2223322 2344555443  334456667777654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.083  Score=50.44  Aligned_cols=127  Identities=18%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +..+|.|+|+ |.+|..+|..|..+|.  +|+++|....   ......+....    +..+.+.. . +...++|+||++
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~-~~~~~~D~Vv~s   85 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-P-TLPEDTDLVVTS   85 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-c-cccCCCCEEEEC
Confidence            3468999998 9999999999999998  9999996531   11112233222    33333321 1 234679999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~  163 (256)
                      .|.+..... .......+++++.+  ++-.+.+...+..+|-+|-..  .+++.+++.+++..|
T Consensus        86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            887642210 11112234444432  222222111133355565443  344556677777655

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.034  Score=48.10  Aligned_cols=74  Identities=15%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |+|.|+||+|++|++++..|+.+++  +|+..-.+......+  . .........+.....+..++++.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999999987  888776653211112  2 111000111111234556789999999987643

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.98  E-value=0.026  Score=51.19  Aligned_cols=94  Identities=20%  Similarity=0.296  Sum_probs=60.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.||+.+|..+..-|.  +|..||.....      .+..    +.    ..++++.++.||+|++...
T Consensus       143 L~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~------~~~~----~~----~~~l~ell~~sDvv~lh~P  205 (311)
T PRK08410        143 IKGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN------KNEE----YE----RVSLEELLKTSDIISIHAP  205 (311)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc------cccC----ce----eecHHHHhhcCCEEEEeCC
Confidence            35579999998 9999999999876666  99999974211      0111    11    1256789999999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      ..  + +++ .++  |    ++   .+....|++++||++=  =+|
T Consensus       206 lt--~-~T~-~li--~----~~---~~~~Mk~~a~lIN~aRG~vVD  238 (311)
T PRK08410        206 LN--E-KTK-NLI--A----YK---ELKLLKDGAILINVGRGGIVN  238 (311)
T ss_pred             CC--c-hhh-ccc--C----HH---HHHhCCCCeEEEECCCccccC
Confidence            21  1 111 111  1    12   2333468899999973  355

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.98  E-value=0.017  Score=47.69  Aligned_cols=55  Identities=27%  Similarity=0.522  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCC-cHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~-VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +..||.|+|+ |. +|..++..|..+|.  +|++++.+.                       .++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            4569999999 86 59989999998887  788887531                       134567899999999977


Q ss_pred             CC
Q 025206          106 VP  107 (256)
Q Consensus       106 ~~  107 (256)
                      .|
T Consensus        97 ~~   98 (168)
T cd01080          97 KP   98 (168)
T ss_pred             CC
Confidence            65

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.97  E-value=0.097  Score=50.63  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcc--cCCC-c----EEEEe--cCCc------
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI--NTRS-E----VAGYM--GNDQ------   89 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~--~~~~-~----v~~~~--~t~d------   89 (256)
                      ..+.||+|+|+ |-+|...+..+...|-  +|+.+|.+.. ...+..+.-.  ..+. .    -..|.  -+.+      
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            35679999998 9999998888888886  8999999832 2222222110  0000 0    00000  0111      


Q ss_pred             --cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206           90 --LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        90 --~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                        +.+.++++|+||.|+|.|.++..         .-+.++..+.+   .|.+.|+.++-+
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~m---kpGgvIVdvg~~  287 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASM---KPGSVIVDLAAE  287 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhc---CCCCEEEEEccC
Confidence              11224689999999998753211         01124444443   478888888764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.97  E-value=0.02  Score=51.97  Aligned_cols=91  Identities=16%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|+|. |.+|+.++..+..-|.  +|..+|.....    +..       ..    -.++++.++.||+|++..
T Consensus       144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~----~~~-------~~----~~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        144 DVRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS----VCR-------EG----YTPFEEVLKQADIVTLHC  205 (314)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc----ccc-------cc----cCCHHHHHHhCCEEEEcC
Confidence            345579999998 9999999999887776  89988853210    000       00    125678999999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...  +. + ..++  |    ++   .+....|++++||++=
T Consensus       206 Plt--~~-T-~~li--~----~~---~l~~mk~ga~lIN~aR  234 (314)
T PRK06932        206 PLT--ET-T-QNLI--N----AE---TLALMKPTAFLINTGR  234 (314)
T ss_pred             CCC--hH-H-hccc--C----HH---HHHhCCCCeEEEECCC
Confidence            321  10 1 1111  1    22   2333358899999973

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.07  Score=45.10  Aligned_cols=107  Identities=17%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc---CCCCEEEEe
Q 025206           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL---EDSDVVIIP  103 (256)
Q Consensus        33 IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal---~~aDvVIi~  103 (256)
                      |+||+|.+|..++..|+++|.  +|++.+.+.  ......++.. .  ..++.+..+    .++.+++   ...|++|+.
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG-G--APVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            899999999999999999998  899999863  2222222321 1  122222111    1222223   347999999


Q ss_pred             cCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|......   .+   -.+.+..|+.....+.+ .....+.+.+++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence            98643211   11   23345566655555555 22233445666554

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.95  E-value=0.021  Score=55.33  Aligned_cols=107  Identities=14%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHc----CCCc-----cEEEEEeCCCc----h-----hHHHHHhcccCCCcEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT----P-----GVAADVGHINTRSEVAGYM   85 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~----~~~~-----~eV~LiD~~~~----~-----g~~~dl~~~~~~~~v~~~~   85 (256)
                      ...+..||.+.|| |.-|..+|..|..    .|+-     ..++++|.+-+    .     .....+.+....  ... .
T Consensus       293 ~~l~d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~-~  368 (559)
T PTZ00317        293 VPPEEQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDIS--AED-S  368 (559)
T ss_pred             CChhhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccc--ccc-c
Confidence            3345569999998 9999999988763    5652     48999998721    1     111112221100  000 0


Q ss_pred             cCCccccccCCC--CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           86 GNDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        86 ~t~d~~eal~~a--DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ...++.|+++++  |+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||.
T Consensus       369 ~~~~L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~rPIIFaLSNPt  419 (559)
T PTZ00317        369 SLKTLEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNVERPIIFPLSNPT  419 (559)
T ss_pred             cCCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            023788999999  9888765543   2           12478899999999999999999997

>PRK07877 hypothetical protein; Provisional

Probab=95.95  E-value=0.025  Score=56.88  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----chhH---------------HHHHhcccCCCcEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYMG   86 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----~~g~---------------~~dl~~~~~~~~v~~~~~   86 (256)
                      +..||+|+|+ | +|++++..|+..|.+++++|+|-+.     ++-+               +..+.+.....++..+..
T Consensus       106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            3569999999 9 9999999999999778999999772     1101               111222222234444331


Q ss_pred             ---CCccccccCCCCEEEEec
Q 025206           87 ---NDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        87 ---t~d~~eal~~aDvVIi~a  104 (256)
                         ..++.+.++++|+||-+.
T Consensus       184 ~i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        184 GLTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             cCCHHHHHHHhcCCCEEEECC
Confidence               234556688999999984

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.94  E-value=0.059  Score=45.82  Aligned_cols=114  Identities=13%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------ccCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------ALED   96 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al~~   96 (256)
                      |.|+||+|.+|..++..|+++|.  +|++++...   ......++.+..  .++..+..+ ++   +.+       ....
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46999999999999999999998  888887542   122223333211  122222211 11   111       1235


Q ss_pred             CCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 025206           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tNPv  148 (256)
                      .|.+|.++|......   .+   ....+..|+.....+.+.+    .+..+.+.++++|.+.
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999988643221   12   2334566655544444432    2223456677776543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.94  E-value=0.017  Score=52.29  Aligned_cols=91  Identities=20%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             hhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (256)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~   82 (256)
                      +-.++|-|--+-+-+++... ...+|+|||+ |..|...+..+.. ++ +.+|.++|++.  +...+.++.+..  ..+.
T Consensus       104 lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~~  178 (314)
T PRK06141        104 LTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQG--FDAE  178 (314)
T ss_pred             hhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcC--CceE
Confidence            33444444444333444433 3468999998 9999998775554 44 46999999873  333344443311  1233


Q ss_pred             EEecCCccccccCCCCEEEEec
Q 025206           83 GYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        83 ~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .   ..++++++++||+|+.+-
T Consensus       179 ~---~~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        179 V---VTDLEAAVRQADIISCAT  197 (314)
T ss_pred             E---eCCHHHHHhcCCEEEEee
Confidence            2   235667899999996653

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.046  Score=51.73  Aligned_cols=128  Identities=19%  Similarity=0.308  Sum_probs=72.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      .++|.|+|+ |..|.+.+..|..+|.  +|.+.|..+.......|....  ..+..+.+..+ .+.+.++|+||.+.|.|
T Consensus         5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS   78 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence            358999998 9999999999999998  999999864321112233211  12343333322 23357899999998887


Q ss_pred             CCCCCCHHHHHHHHHHHH--HHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206          108 RKPGMTRDDLFNINAGIV--KDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~--~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~  163 (256)
                      ...- ......+.+++++  .+++..+.+.. +..+|-+|  |==.+++.+++.+++..|
T Consensus        79 ~~~p-~~~~a~~~~i~v~~~~~~~~~~~~~~-~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         79 ERQP-DIEAFKQNGGRVLGDIELLADIVNRR-GDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCCH-HHHHHHHcCCcEEEhHHHHHHhhhcC-CCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            4221 1111123444443  22332222211 12344454  433344557777787765

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.93  E-value=0.16  Score=48.88  Aligned_cols=75  Identities=23%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      ..||.|+|. |..|.++|..|...|.  +|...|.+.......+|.....  .++...+..+ .+.+.++|+||...|.+
T Consensus         7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence            358999998 9999999999999998  9999998642211123443211  1222222222 34678999999998876


Q ss_pred             C
Q 025206          108 R  108 (256)
Q Consensus       108 ~  108 (256)
                      .
T Consensus        81 ~   81 (498)
T PRK02006         81 P   81 (498)
T ss_pred             C
Confidence            5

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.061  Score=50.95  Aligned_cols=125  Identities=19%  Similarity=0.286  Sum_probs=71.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH---HHHHhcccCCCcEEEEecCC-cc---ccccCCCCEEEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGND-QL---GQALEDSDVVII  102 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~---~~dl~~~~~~~~v~~~~~t~-d~---~eal~~aDvVIi  102 (256)
                      ||.|+|+ |..|.+.|..|...|+  +|.+.|.+.....   ...|....    ++.+.+.. ++   .+.+.+.|.||.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999998 9999999999999998  9999998642111   11233322    22222221 11   124678999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCCchHHHHHHHHHhC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~~~i~~~~~~~~~  163 (256)
                      +.|.|... .........+++++.++.-...... +..+|-+|  |==.+++.+++.+++..|
T Consensus        75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            88876421 1111122345555554443322222 22344454  443455567778887776

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.91  E-value=0.078  Score=45.11  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li   60 (256)
                      ..+.|+||+|++|+.++..|++.|.  +|++.
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~   31 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVN   31 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEE
Confidence            3689999999999999999999997  88764

>PRK06484 short chain dehydrogenase; Validated

Probab=95.90  E-value=0.031  Score=53.58  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.+.|+||++.+|..++..|+.+|.  +|+++|.+
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~   38 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRN   38 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            34788999999999999999999998  99999886

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.85  E-value=0.032  Score=44.74  Aligned_cols=57  Identities=30%  Similarity=0.466  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+.++|.|+|.+..+|..++..|..+|.  .+.+.|.+                       +.++++++++||+||.+.|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg   80 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP   80 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence            3556999999999999999999998887  88877642                       1144567899999999987


Q ss_pred             CC
Q 025206          106 VP  107 (256)
Q Consensus       106 ~~  107 (256)
                      .+
T Consensus        81 ~~   82 (140)
T cd05212          81 KP   82 (140)
T ss_pred             CC
Confidence            65

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.84  E-value=0.019  Score=52.82  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             hhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEE
Q 025206            7 RSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY   84 (256)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~   84 (256)
                      -..+|-|--+-+-+++... ...+++|||+ |..+...+..+..---+.+|.++|++.  ....+.++.+..  ..+.. 
T Consensus       109 T~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~~-  183 (346)
T PRK07589        109 TALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIVA-  183 (346)
T ss_pred             HHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEEE-
Confidence            3344444333333444433 4468999998 999887665544333468999999984  334444554421  12332 


Q ss_pred             ecCCccccccCCCCEEEEec
Q 025206           85 MGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        85 ~~t~d~~eal~~aDvVIi~a  104 (256)
                        ..++++++++||+|+.+-
T Consensus       184 --~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        184 --CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             --eCCHHHHHhcCCEEEEec
Confidence              346789999999999864

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.79  E-value=0.026  Score=51.29  Aligned_cols=93  Identities=8%  Similarity=0.054  Sum_probs=58.2

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEE
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~   82 (256)
                      .|-.++|-|--+-+-+++... ....++|+|+ |..+...+..+..-..+.+|.++|++.  +...+..+.+..  ..+.
T Consensus       106 ~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v~  181 (315)
T PRK06823        106 WLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAVN  181 (315)
T ss_pred             hHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcEE
Confidence            344455555444444455443 4568999998 999887776665544468999999984  232333333221  2233


Q ss_pred             EEecCCccccccCCCCEEEEec
Q 025206           83 GYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        83 ~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .   ..+.++++++||+|+.+-
T Consensus       182 ~---~~~~~~av~~ADIV~taT  200 (315)
T PRK06823        182 T---TLDAAEVAHAANLIVTTT  200 (315)
T ss_pred             E---ECCHHHHhcCCCEEEEec
Confidence            2   235678999999999864

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.79  E-value=0.013  Score=53.76  Aligned_cols=70  Identities=21%  Similarity=0.401  Sum_probs=43.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ||+|+||+|++|..++..|..+++ ..++.++-..+..+....+..    ..+...  ..+ .++++++|+||++.|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCCH
Confidence            689999999999999999988655 336666644422222222211    112211  112 2456899999998763

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.76  E-value=0.074  Score=44.98  Aligned_cols=35  Identities=20%  Similarity=0.411  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|+|+ |.+|+.++..|+..|. .+++++|.+
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECC
Confidence            4569999998 8899999999999996 689999976

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.75  E-value=0.14  Score=42.06  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=41.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .++|+|||. |.-|...|..|...|+  +|+.-..........-..+ .    ++    ..++.|+.+.||+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~-G----f~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKAD-G----FE----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHT-T-----E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHC-C----Ce----eccHHHHHhhCCEEEEeC
Confidence            469999998 9999999999999999  8877766532221111122 1    11    235678999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=95.75  E-value=0.096  Score=48.17  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=36.3

Q ss_pred             cHHHHHHHHHcCCCccEEEEEeCCCch--h-HHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           40 IGQPLALLMKLNPLVSRLALYDIANTP--G-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        40 VG~~la~~l~~~~~~~eV~LiD~~~~~--g-~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      =|..+|..|+..|+  +|+++|.++..  . ....+...    .++.   .++..+++++||+||++.
T Consensus        31 gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~---asd~~eaa~~ADvVIlaV   89 (342)
T PRK12557         31 GGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV---VSDDAEAAKHGEIHILFT   89 (342)
T ss_pred             CHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE---eCCHHHHHhCCCEEEEEC
Confidence            46788888998998  99999987421  1 11122221    1232   224467789999999994

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.73  E-value=0.033  Score=50.60  Aligned_cols=69  Identities=14%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCC-CchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .++|+| ||+|.||..+...|.++++ ++++.|++.. +..|....+..    ..+.+.. . + ++++++.|++++ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~-l-~-~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIA-P-E-EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEE-C-C-ccCcccCCEEEE-cC
Confidence            468999 9999999999999999886 7889999876 43342222221    1232221 1 1 247899999999 65

>PLN02494 adenosylhomocysteinase

Probab=95.71  E-value=0.047  Score=52.13  Aligned_cols=90  Identities=22%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|++..+ ..+.  .+ .+.  +      .++.++++.+|+||.+.|
T Consensus       253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~-G~~--v------v~leEal~~ADVVI~tTG  318 (477)
T PLN02494        253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--ME-GYQ--V------LTLEDVVSEADIFVTTTG  318 (477)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hc-CCe--e------ccHHHHHhhCCEEEECCC
Confidence            3468999998 9999999999987887  89999987432 1211  11 111  1      134568899999998765


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ..               .++  ..+.+....+.+++++++-+
T Consensus       319 t~---------------~vI--~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        319 NK---------------DII--MVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             Cc---------------cch--HHHHHhcCCCCCEEEEcCCC
Confidence            32               111  02333444578999999874

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.70  E-value=0.033  Score=50.61  Aligned_cols=89  Identities=19%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|+|. |.||+.+|..+..-|.  +|..+|.....       + .    ..    ..++.+.++.||+|+++.
T Consensus       145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~~-------~-~----~~----~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        145 ELEGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGRP-------A-R----PD----RLPLDELLPQVDALTLHC  205 (317)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCCc-------c-c----cc----ccCHHHHHHhCCEEEECC
Confidence            345579999998 9999999999986676  99999864210       0 0    11    125678899999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...  +. ++ .++  |    ++.   +....|++++||++
T Consensus       206 Plt--~~-T~-~li--~----~~~---~~~mk~ga~lIN~a  233 (317)
T PRK06487        206 PLT--EH-TR-HLI--G----ARE---LALMKPGALLINTA  233 (317)
T ss_pred             CCC--hH-Hh-cCc--C----HHH---HhcCCCCeEEEECC
Confidence            321  11 11 111  1    222   23335889999997

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.70  E-value=0.13  Score=44.53  Aligned_cols=76  Identities=13%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |+....+.++|.|||| |.|+..=+..|+..|-  +|+++...- .....++...   ..++.....++ ++.++++++|
T Consensus        18 pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA--~VtVVap~i-~~el~~l~~~---~~i~~~~r~~~-~~dl~g~~LV   89 (223)
T PRK05562         18 FISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGC--YVYILSKKF-SKEFLDLKKY---GNLKLIKGNYD-KEFIKDKHLI   89 (223)
T ss_pred             eeEEECCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCC-CHHHHHHHhC---CCEEEEeCCCC-hHHhCCCcEE
Confidence            3334445679999999 9999988888888775  899996542 1222233321   13444333333 3578999999


Q ss_pred             EEec
Q 025206          101 IIPA  104 (256)
Q Consensus       101 Ii~a  104 (256)
                      |.+.
T Consensus        90 iaAT   93 (223)
T PRK05562         90 VIAT   93 (223)
T ss_pred             EECC
Confidence            8874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.70  E-value=0.22  Score=45.72  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCC-CCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~-aDvVIi~ag  105 (256)
                      ..+|+|+|+ |-+|......+...|.  +|+.+|+++. ...+.+|-   ...-+.. . +.+..+++++ +|+|+.+++
T Consensus       167 G~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         167 GKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC
Confidence            469999998 8777766666665775  9999999842 22334342   1111111 1 1222334433 999999986


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-CCchHHHHHHHHHhCCCCCCcEEEE---eechHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVVRA  181 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-d~~~~i~~~~~~~~~~~~~~kviG~---t~lds~R~  181 (256)
                       +.               -+....+   -..+++.++.+.+|- .....+-  .....  +...+|.|+   +.-|+..+
T Consensus       239 -~~---------------~~~~~l~---~l~~~G~~v~vG~~~~~~~~~~~--~~~li--~~~~~i~GS~~g~~~d~~e~  295 (339)
T COG1064         239 -PA---------------TLEPSLK---ALRRGGTLVLVGLPGGGPIPLLP--AFLLI--LKEISIVGSLVGTRADLEEA  295 (339)
T ss_pred             -hh---------------hHHHHHH---HHhcCCEEEEECCCCCcccCCCC--HHHhh--hcCeEEEEEecCCHHHHHHH
Confidence             31               0222333   334788999999994 3321110  11111  446689998   33444333


Q ss_pred             HH
Q 025206          182 KT  183 (256)
Q Consensus       182 ~~  183 (256)
                      ..
T Consensus       296 l~  297 (339)
T COG1064         296 LD  297 (339)
T ss_pred             HH
Confidence            33

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.69  E-value=0.035  Score=48.10  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=30.1

Q ss_pred             CCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+.+.|+||+  +.+|..++..|+..|.  +|++.+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~   42 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQN   42 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCc
Confidence            34578999997  5899999999999998  89998876

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=95.68  E-value=0.12  Score=55.60  Aligned_cols=114  Identities=12%  Similarity=0.027  Sum_probs=66.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC--CccEEEEEeCCCchh-HHHHHhcc---------cCCCcEEEEecC-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPG-VAADVGHI---------NTRSEVAGYMGN-------   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~--~~~eV~LiD~~~~~g-~~~dl~~~---------~~~~~v~~~~~t-------   87 (256)
                      ++++|.|+||+|++|++++..|+..+  ...+|+......... ....+.+.         ....++..+.++       
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35789999999999999999988776  223666655542111 11111110         001123333221       


Q ss_pred             ---CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 025206           88 ---DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (256)
Q Consensus        88 ---~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~i  141 (256)
                         ..+.+...++|+||++|+... ......++...|+....++++.+.+.....++
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v 1105 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFS 1105 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEE
Confidence               112334578999999987542 22233444456899999999988766544333

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.67  E-value=0.028  Score=50.27  Aligned_cols=56  Identities=18%  Similarity=0.374  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ...+|+|||.+|.||.+++..|...|.  .|.++...                       +.++++.+++||+||.+.|.
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~  211 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGR  211 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCc
Confidence            456999999999999999999999987  88776211                       12455678999999999886


Q ss_pred             C
Q 025206          107 P  107 (256)
Q Consensus       107 ~  107 (256)
                      |
T Consensus       212 ~  212 (284)
T PRK14179        212 G  212 (284)
T ss_pred             c
Confidence            6

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.66  E-value=0.093  Score=49.52  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~a  104 (256)
                      .++|.|+|+ |.+|.+.+..|+..|.  +|.+.|.+..  ......+....    ++.+.+. +..+.+. ++|+||...
T Consensus         5 ~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~g----~~~~~~~-~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          5 NKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEEG----IKVICGS-HPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhcC----CEEEeCC-CCHHHhcCcCCEEEECC
Confidence            358999999 7799999999999998  9999997631  12222343322    2222222 1122334 499999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~  163 (256)
                      |.+... .........+++++.+.- ......+ ..+|-+|-..  .+++.+++.+++..|
T Consensus        77 gi~~~~-~~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         77 GIPYTN-PMVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CCCCCC-HHHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            877432 111122233444443221 1112222 2244455443  455557777787765

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.64  E-value=0.034  Score=52.51  Aligned_cols=102  Identities=23%  Similarity=0.388  Sum_probs=62.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +..+|+|+|+ |.+|..++..|...|. .+|+++|.+...  ..+.++.     .....   ..++.+.+.++|+||.+.
T Consensus       181 ~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT  250 (423)
T PRK00045        181 SGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST  250 (423)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence            4469999998 9999999998887774 479999987322  2222221     11111   124566789999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIA-KYCPNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~~p~~~iiv~tNPvd~  150 (256)
                      |.+..- ..        .+.++..   +. +...+.+++=+++|-|+
T Consensus       251 ~s~~~~-i~--------~~~l~~~---~~~~~~~~~vviDla~Prdi  285 (423)
T PRK00045        251 GAPHPI-IG--------KGMVERA---LKARRHRPLLLVDLAVPRDI  285 (423)
T ss_pred             CCCCcE-Ec--------HHHHHHH---HhhccCCCeEEEEeCCCCCC
Confidence            654211 11        1111111   11 11345788889999884

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.63  E-value=0.038  Score=51.38  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||.|+|+ |.+|+.++..|+..|. .+|+++|.+
T Consensus        40 ~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDD   74 (370)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            4569999998 9999999999999885 699999987

>PLN02858 fructose-bisphosphate aldolase

Probab=95.63  E-value=0.063  Score=57.79  Aligned_cols=96  Identities=15%  Similarity=0.242  Sum_probs=0.0

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .++..++|++||. |.+|.+++..|+..|+  +|..+|++  .....++.......       ..++.+++++||+||++
T Consensus       320 ~~~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~--~~~~~~l~~~Ga~~-------~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        320 QAKPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVY--KPTLVRFENAGGLA-------GNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             cccCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCC--HHHHHHHHHcCCee-------cCCHHHHHhcCCEEEEe


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tN  146 (256)
                      ...+               ..+++++    ..+....+..++|..|.
T Consensus       388 V~~~---------------~~v~~Vl~g~~g~~~~l~~g~ivVd~ST  419 (1378)
T PLN02858        388 VANE---------------VQAENVLFGDLGAVSALPAGASIVLSST  419 (1378)
T ss_pred             cCCh---------------HHHHHHHhchhhHHhcCCCCCEEEECCC

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.62  E-value=0.12  Score=45.67  Aligned_cols=69  Identities=22%  Similarity=0.228  Sum_probs=39.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEE-EeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~L-iD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+||+|||+ |.+|..++..+...+.. ++.. ++.........+....    .+..   .+++++.-.+.|+||++++
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~----~~~~---~~d~~~l~~~~DvVve~t~   70 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE----AVRV---VSSVDALPQRPDLVVECAG   70 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc----CCee---eCCHHHhccCCCEEEECCC
Confidence            479999998 99999999888765432 4433 3433221111111111    1222   2244333357999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-82
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		7e-82
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		6e-77
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		8e-77
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		6e-65
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		4e-64
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		5e-64
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		5e-63
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-18
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		4e-18
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		6e-18
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-17
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		2e-17
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		5e-17
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		1e-16
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		5e-15
1guy_A	309	Structural Basis For Thermophilic Protein Stability		5e-15
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-15
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-15
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		7e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-12
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		9e-12
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		2e-11
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		2e-11
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		5e-11
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		1e-10
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-10
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		4e-10
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		1e-09
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		1e-09
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		2e-09
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		3e-09
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-09
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		4e-09
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-09
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		5e-09
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		5e-09
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		5e-09
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		5e-09
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		5e-09
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		6e-09
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		6e-09
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		3e-08
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		6e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		2e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		3e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		4e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		4e-07
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		5e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		6e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		7e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		7e-07
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		1e-06
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		1e-06
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		1e-06
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		1e-06
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-06
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		3e-06
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		4e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		4e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		5e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		5e-06
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		6e-06
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		8e-06
1ldb_A	317	Structure Determination And Refinement Of Bacillus		9e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		1e-05
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		6e-05
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		8e-05
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		2e-04
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		3e-04
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		3e-04
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		3e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		4e-04
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		5e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 180/255 (70%), Gaps = 9/255 (3%)
Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77
Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197
Query: 182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEV 257
Query: 242 VEAKAGKGSATLSMA 256
           VEAKAG GSATLSMA
Sbjct: 258 VEAKAGAGSATLSMA 272

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  300 bits (767), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 171/230 (74%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7   PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+ISN
Sbjct: 67  QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF                   HAG
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 186
Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 187 VTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMA 236

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  283 bits (725), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/227 (62%), Positives = 168/227 (74%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F                   HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  283 bits (723), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 170/229 (74%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
           + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G 
Sbjct: 28  NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGP 87
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A++ +I+NP
Sbjct: 88  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANP 147
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF                   HAG 
Sbjct: 148 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 207
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 208 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMA 256

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPG  R DLFN+NAGIVK L   IA  CPNA + +I+NP
Sbjct: 65  DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF                   H+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
           TILPL SQ       +DE+I ALTKR Q+ GTEVVEAKAG GSATLS
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 159/228 (69%), Gaps = 4/228 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 159/228 (69%), Gaps = 4/228 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  237 bits (605), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/228 (57%), Positives = 158/228 (69%), Gaps = 4/228 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
           ++  +KV+V+GA G  G   A L+    L + + L DI      T G A D+      S 
Sbjct: 5   TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81  VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
           V G+  N     D    A  DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IAK+
Sbjct: 60  VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
            PNAI+ +++NPV++   +   VFK+AG   E+ +     LD  R +TF           
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKD 174
Query: 196 XXXXXXXXHAGITILPL----FSQATPKANLA-DEDIKALTKRTQDGGTEVVEAKAGKGS 250
                   H G  ++PL    ++   P   L   E ++A+ +RT+ GG E+V    G GS
Sbjct: 175 ITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGS 232
Query: 251 A 251
           A
Sbjct: 233 A 233

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++   I ++  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   ++K+G   E+ +     LD  R ++F                 
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
             H G  ++P+    T    P A+L + E I  L +RT+ GG E+V     +GSA  S
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYS 227

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 28/232 (12%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I + +++ 
Sbjct: 15  KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G    +   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYCPNA V 
Sbjct: 73  G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            I+NP+++ V      FK+       K+ G++  LD  R +                   
Sbjct: 129 CITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV 184
Query: 202 XXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVE 243
             H G  ++PL S  T           +  +    I  + K+T  GG E+VE
Sbjct: 185 GGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVE 235

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G   D      VG  +T+  +
Sbjct: 2   KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  DSD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 99/227 (43%), Gaps = 19/227 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
           RK   L  AG IG  LA L  +  L   + L+DIA     G A D+        V   + 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + LE+SDVVI+ AGVPRKPG +RDDL  IN  + + +   I   CPNA V  I+N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXXXHA 205
           P++    I     +K     + K+ G    LD  R +TF                   H 
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH- 178
Query: 206 GITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVV 242
           G T +PL            Q   +  L  E + A+  RT+ GG E+V
Sbjct: 179 GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV 225

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 28/235 (11%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
           S+   K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V 
Sbjct: 4   SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83  GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P
Sbjct: 59  GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
            A V  I+NP+++ V  A + F     +    + GV  LD  R + F             
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVT 173
Query: 198 XXXXXXHAGITILPLFSQAT----PKANL------ADEDIKALTKRTQDGGTEVV 242
                 H G +++PL   +T    P  +L      + + +  + +RT+DGG E+V
Sbjct: 174 VFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV 227

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    + I    G+  D+      TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183
           I+NPV+  +   A V  K   +   ++FG+ T LD +R K 
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKV 157

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 --QATPKAN-LADEDIKALTKRTQDGGTEVV 242
                P +  +A + +  + +RT+ GG E+V
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H    +  A     
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D     L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NP
Sbjct: 61  DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
           V+    +    F K    + +K+FG  T LD  R +T 
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTL 152

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 24/238 (10%)
Query: 24  ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRS 79
           E V  R KVA++GA G +G   A  M L    + L L D+      G A D+ H +    
Sbjct: 2   EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +++ Y G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + 
Sbjct: 61  QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXX 199
           ++ ++SNPV+    I   + K +G    K +   T LD +R +                 
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGY 174
Query: 200 XXXXHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
               H G + LPL+S               PK N  +ED K + +  +  G  +++ K
Sbjct: 175 IIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK 231

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
           AG +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G  G D  
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91  GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
              L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP++ 
Sbjct: 65  -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAK 182
              I   ++K++G   NE  +FG+   LD  R K
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLK 152

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
           KV V+GA G +G  +A  +    +   + + DI +    G A D   +   S + G+   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85  -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G +  G   EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 58  VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           ++NP++    +A E    A  +   ++ G+   LD  R ++F                  
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 XHAGITILPLFSQAT----PKANLADE-DIKALTKRTQDGGTEVVE 243
            H G T++PL    T    P   L D+  I+ + +RT+  G E+V+
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26  VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
           + + K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H        G
Sbjct: 6   LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84  YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           + G        + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+
Sbjct: 59  FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 A-IVNMISNPVNST 151
              V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
            I+NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH-INTRSEVAGYM 85
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H +      +  +
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V  I+
Sbjct: 63  GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
           NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 122 NPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
           + +LGA G +G   A+++ +      L    IA TPG     A D+ H      V   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + +N
Sbjct: 58  GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           PV++   +   ++KK G   E+ +     LD  R   +
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYY 152

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 26/241 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL            +   K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 A 251
           A
Sbjct: 241 A 241

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 26/241 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL            +   K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 A 251
           A
Sbjct: 241 A 241

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 10/196 (5%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--DVGHINTRSEVA 82
           +V   K+AV+GA G +G  LA       +   + L DIA     A   D+ H ++     
Sbjct: 4   TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
              G+D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  
Sbjct: 63  SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
           +I+NPV+    IA  V +K     E ++FG  T LD  R +                   
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 202 XXHAGITILPLFSQAT 217
             H G + +PL+  AT
Sbjct: 178 GEH-GDSEVPLWESAT 192

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + ++DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L+D+DVVI+ AG  + PG       RDDL  +N  I+ ++   I   CPNA
Sbjct: 61  VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
                H    +L          PL  +      + D+++ A+  RT +   E+V   A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIVNLHA 233

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       RDDL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
                H    +L          PL      K  ++D +++A+  RT +   E+V   A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA 233

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KA 246
            A
Sbjct: 232 HA 233

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KA 246
            A
Sbjct: 231 HA 232

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KA 246
            A
Sbjct: 231 HA 232

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
           CPNA + +++NPV+    +  ++  +     + K+ G+   LD  R K +
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYY 162

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 31/237 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + ++D+  N P G A D  H N    +  +
Sbjct: 2   PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I   
Sbjct: 60  VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
           CPNA + +++NPV+  V +   +F+ +G    K +     LD  R K +           
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRD 172
Query: 196 XXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
                   H    +L          PL  +      + DE+++ +  RT +   E+V
Sbjct: 173 VNALIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDEEVEGIFDRTVNTALEIV 228

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           ++PD K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   +  
Sbjct: 18  TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             + N        +S +V++ AGV ++ G +R +L   N  + K +   I KY PN I+ 
Sbjct: 77  KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEV 158
           ++SNPV+    +A ++
Sbjct: 136 VVSNPVDILTYVAWKL 151

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 25/238 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       R DL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
                H    +L          PL      K  ++D +++A+  RT +   E+V   A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA 233

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++ +L    + +     A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEV 158
           +A ++
Sbjct: 125 LATQL 129

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   +AL D+      G   D+ H    + 
Sbjct: 15  EEHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLR 73
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +V+I AG  ++ G +R +L   N  I K +   I KY 
Sbjct: 74  TPKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYS 128
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 129 PNCKLLVVSNPVDILTYVAWKI 150

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 27/229 (11%)
Query: 45  ALLMKLNPLVSRLALYDIAN--TPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
           A+ + L  L   LA+ D+      G   D+ H  +  ++++ G    D+      +S VV
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
           ++ AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K
Sbjct: 92  VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH-------------AGI 207
            +G    + +   T LD  R +                     H             AG+
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEHGDSSVPVWSGVNVAGV 208
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           ++  L  Q   + +   E+ KA+ K   DG  EV++ K G  S  + M+
Sbjct: 209 SLQGLNPQMGTEGD--GENWKAIHKEVVDGAYEVIKLK-GYTSWAIGMS 254

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
            H G T  P++S A        E +KA  +  +D   ++ E
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 219

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
           T LP++S     AN+A + +K L ++  +G  ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G    D    A  +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSG---KDYSVTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           P+  + ++SNPV+    +A ++
Sbjct: 128 PHCKLLVVSNPVDILTYVAWKI 149

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
           T LP++S     AN+A + +K L ++  +G  ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 7   DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P++PG TR DL N N  I+K +   I     N I  
Sbjct: 67  SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 178
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
            H G T  P++S A        E +KA  +  +D   ++ E
Sbjct: 179 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 218

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 14/221 (6%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+       +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
            H G T  P++S A        E +KA  +  +D   ++ E
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFE 219

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 14  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 72
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 73  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 141 VNMISNPVNSTVPIAAEV 158
           + ++SNPV+    +A ++
Sbjct: 132 LLIVSNPVDILTYVAWKI 149

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 15  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 73
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 74  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 141 VNMISNPVNSTVPIAAEV 158
           + ++SNPV+    +A ++
Sbjct: 133 LLIVSNPVDILTYVAWKI 150

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 6   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 62  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 164

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 163

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 26/224 (11%)
Query: 50  LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
           L  L   LAL D+      G A D+ H    + T   VA     D+      +S VV++ 
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
           AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K +G
Sbjct: 96  AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH--------AGITILPLFSQ 215
               + +   T LD  R +                     H        +G+ +  +F Q
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQ 212
Query: 216 ATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
                   D   ED K++ K   D   EV++ K G  S  + M+
Sbjct: 213 GLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK-GYTSWAIGMS 255

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           S+P+ +  VL   G +G   A  M    +     + D+    T G A D+      +   
Sbjct: 1   SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                +      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 61  KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           + +NPV+    +    +K +G   E+ +   T+LD  R +
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLR 155

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
           A             K   A +D++ +    +D   +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
           A             K   A +D++ +    +D   +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
           KVAV GAAG IG  L  L+    L+       L L DI   P + A  G +    E   +
Sbjct: 26  KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85  MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
              D++        A +   + I+    PRK GM R DL  +NA I K+   AIA     
Sbjct: 83  PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTF 184
           +  V ++ NP N+   I   + K A G  N + +  +T LD  RA + 
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSL 187

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 19/229 (8%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A       
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90  LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +NP
Sbjct: 65  YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +    +K +G   E+ +   TTLD  R +                     H G 
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GD 180
Query: 208 TILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAK 245
           T LP++S A     P + L +       E++  +    ++    ++E K
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 19/229 (8%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A       
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90  LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +NP
Sbjct: 65  YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +    +K +G   E+ +   TTLD  R +                     H G 
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GD 180
Query: 208 TILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAK 245
           T LP++S A     P + L +       E++  +    ++    ++E K
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 66  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 177
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 178 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 237
Query: 240 EVVEAK 245
           EV++ K
Sbjct: 238 EVIKLK 243

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 65  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 176
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 177 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 236
Query: 240 EVVEAK 245
           EV++ K
Sbjct: 237 EVIKLK 242

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  +D++  ++    PR PGM R DL +IN  I  +   A+ A   PN  V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
              I     K A     K    +T LD  RAK 
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAKC 203

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 20  GYSSESVPDRKVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDI----ANTPGV 68
           G  S + P ++VAV GAAG I   L        LL K  P++  L L D+    A   GV
Sbjct: 1   GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDLPQAQAAVKGV 58
Query: 69  AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL 128
             ++        +AG +  D    A +D+DV ++    PR  GM R DL + NA I    
Sbjct: 59  VMELDDC-AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQ 117
Query: 129 CSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            +A+ +     + V ++ NP N+   IA    K A    +K    +  LD  RA
Sbjct: 118 GAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRA 168

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG I   L        +L K  P++  L L +I N     A  G +    +  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
              +AG   +     A +D+DV ++    PR PGM R DL   NA I      AI A   
Sbjct: 65  FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            N  V ++ NP N+   IA    K A +   K    +  LD  RA
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRA 166

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
           +A
Sbjct: 125 VA 126

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  ED D  ++    PR PGM R  L +IN  I  D   A+ A    N  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAK 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-137
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-136
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-128
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-48
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	2e-42
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	3e-42
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	4e-42
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	6e-42
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	6e-42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	7e-42
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	8e-42
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	9e-42
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	5e-41
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	6e-40
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-39
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-39
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	5e-39
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	3e-38
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	3e-38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	3e-38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	5e-38
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	5e-38
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	7e-38
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-37
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-37
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	5e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	9e-37
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	3e-36
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	7e-36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-34
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-34
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	8e-34
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	3e-33
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	4e-32
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-31
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	6e-09
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	9e-07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	2e-06

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  387 bits (996), Expect = e-137
 Identities = 149/227 (65%), Positives = 180/227 (79%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A    ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMA
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  386 bits (995), Expect = e-136
 Identities = 158/235 (67%), Positives = 184/235 (78%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           +    P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2   AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIV
Sbjct: 62  RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A    ++  +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181

Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           GGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMA 236

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  364 bits (936), Expect = e-128
 Identities = 138/229 (60%), Positives = 168/229 (73%), Gaps = 4/229 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM 
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG 228

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  161 bits (410), Expect = 3e-48
 Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 23/237 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
            K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H     E      
Sbjct: 9   EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
              + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+   V +I 
Sbjct: 67  TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
           NP + T  +       +G     ++  +  LD  R ++  A    +  + V N    GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182

Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
            G  +    S A               L +E    L +R   GG  +++ +    S+
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSS 236

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  145 bits (369), Expect = 2e-42
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 24/234 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           KV V+GA G +G  +A  +    +   + + DI +    G A D+          + V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND      EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 61  --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   V  +A  +   ++ G+   LD  R ++F A + +V+V +V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GH G T++PL    T    P   L D   I+ + +RT+  G E+V+      SA
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSA 223

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  145 bits (368), Expect = 2e-42
 Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
           KV+V+GAAG +G      + L  +   +   DI +        AAD  H         Y 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55

Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            N ++ Q        SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I 
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
              SNPV+    +      +AG  + +++ G    LD  R +   + + +  V  V   +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           +G H G   +P+FS+ +        + ++ + L    Q+   +V+E    KG+ 
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGAT 221

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  144 bits (367), Expect = 3e-42
 Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 23/234 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+ V+GA G +G   A  +    L   L L D+      G A D+          ++V G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND       +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ +
Sbjct: 61  --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           +SNP++    I   V        ++++ G+   LD  R ++F A +  V++ ++N  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GH G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSA 224

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  144 bits (367), Expect = 4e-42
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 28/247 (11%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
           KV ++GA+G +G   ALL+   P +  L L    +      G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
                 +   + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I 
Sbjct: 62  YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +I+NPV+    +          +   ++FG+ T LD +R K   A    V++ EV   +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174

Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKA----GKG 249
           +G H G +++PL S  +             +  I  + +  +  G +++  K     G  
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPA 233

Query: 250 SATLSMA 256
           +A L++ 
Sbjct: 234 AAILNVV 240

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  144 bits (367), Expect = 6e-42
 Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 29/246 (11%)

Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
           +  +  +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I 
Sbjct: 9   NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           + +++ G   N+   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYC
Sbjct: 67  SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
           PNA V  I+NP++         FK+       K+ G+   LD  R +   +    V  ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178

Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           V+  VVGGH G  ++PL S  T           +  +    I  + K+T  GG E+VE  
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237

Query: 246 AGKGSA 251
              GSA
Sbjct: 238 -KTGSA 242

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  144 bits (366), Expect = 6e-42
 Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 29/240 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   +D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN ++V+  V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G  ++P  S  +           +  +  E I  +   T+    EV +     G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  144 bits (366), Expect = 7e-42
 Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 26/244 (10%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
           ++ ++  +KV+V+GA G  G   A L+    L + + L DI            D+     
Sbjct: 2   NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                + + G   +D       DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IA
Sbjct: 60  VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ PNAI+ +++NPV+           K   + ++++ G    LD  R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
           V ++   V+GGH G  ++PL   +     P   L   E ++A+ +RT+ GG E+V    G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229

Query: 248 KGSA 251
            GSA
Sbjct: 230 NGSA 233

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  144 bits (365), Expect = 8e-42
 Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 29/240 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K+ ++GA G IG  LA L  +  L   + L+DIA     G A D+           +V 
Sbjct: 6   KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND   + LE+SDVVI+ AGVPRKPGM+RDDL  IN  +++ +   I   CPNA V 
Sbjct: 64  G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    I   + +K     + K+ G+   LD  R +TF A + NV+V +V   V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G T++PL   +            +  L  E + A+  RT+ GG E+V      GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  143 bits (364), Expect = 9e-42
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 24/235 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G +G   A  +    L   + L DI      G A D+            V 
Sbjct: 3   KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N+       +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ 
Sbjct: 61  G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           M++NP++        +  +   + ++++ G    LD  R +TF A +A V+V +V   ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172

Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G  ++PL   +     P +   A + +  + +RT+ GG E+V      GSA
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSA 225

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  142 bits (361), Expect = 5e-41
 Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 29/240 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+A++G+ G IG  LA L  L  L   + L+DIA     G   D+          ++  
Sbjct: 8   NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V 
Sbjct: 66  G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++          +K       K+ G+   LD  R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G +++PL   +T               + + +  + +RT+DGG E+V      GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  139 bits (352), Expect = 6e-40
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 32/240 (13%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M    +     + D+    T G A D+           +  
Sbjct: 6   QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 59  PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + ++++ G  T+LD  R +     + NV+   V+  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           G H G +    +S AT           +  ++D+D+  L    ++   +++     KG+ 
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGAT 230

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  137 bits (348), Expect = 2e-39
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 25/233 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
           + +LGA G +G   A+++ +      L L         G A D+ H    +     ++G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             N    + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + 
Sbjct: 59  -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NPV+        V  K   +  +++ G    LD  R   + + K  V+   VN  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSA 251
           H G  + P+   ++    P  +L   E+I+ +   T + G ++ E +    S+
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR--GYSS 221

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  138 bits (349), Expect = 3e-39
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 27/242 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H  +         
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
           + +++NP++       +V  +A       + G+   LD  R + + A   +V+  +V   
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           V+G H G  ++PL    T              + ++ ++ + + T+  G E+V    G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241

Query: 250 SA 251
           SA
Sbjct: 242 SA 243

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  137 bits (347), Expect = 5e-39
 Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 35/242 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KV ++G  G +G   A  +    +V  L + D+      G   D+ H         R +
Sbjct: 7   NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I K +   +     + I
Sbjct: 66  AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I A    K     ++++ G  T LD  R +   +   +V    V+  
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           ++G H G T LP++S A            +       I+ +  +T+D   ++++    KG
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKG 230

Query: 250 SA 251
           + 
Sbjct: 231 AT 232

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  135 bits (342), Expect = 3e-38
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 33/241 (13%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M L  +   + + DI    T G A D+ +         +  
Sbjct: 10  QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 63  PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + + ++ G  T+LD  R +   A   NV+   V+  ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178

Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
           G H G T  P++S A                + ++ +  + +  +D   E+++    KG+
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGA 234

Query: 251 A 251
            
Sbjct: 235 T 235

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  134 bits (341), Expect = 3e-38
 Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 36/245 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H      +  +V+
Sbjct: 5   AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
           G   N      L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CP
Sbjct: 63  G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
           NA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV   +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174

Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
           N  +VG H G  ++ L    T              ++D +++A+  RT +   E+V    
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL-- 231

Query: 247 GKGSA 251
              S 
Sbjct: 232 -HASP 235

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  134 bits (341), Expect = 3e-38
 Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 36/243 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            +V V+GA G +G      +    +   + L D       G A D  H            
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +
Sbjct: 66  HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K      +++ G  T LD  R +       +V    V+  
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           ++G H G T LP++SQA             K   A +D++ +    +D   +++E    K
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KK 230

Query: 249 GSA 251
           G+ 
Sbjct: 231 GAT 233

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  134 bits (340), Expect = 5e-38
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 36/243 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KVA++GA G +G   A  +    +   L + D+      G   D+ H         ++ 
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y       +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I
Sbjct: 65  YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K     ++++ G  TTLD  R +   +         V   
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           ++G H G T LP++S A                   E++  +    ++    ++E    K
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE---KK 229

Query: 249 GSA 251
           G+ 
Sbjct: 230 GAT 232

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  134 bits (340), Expect = 5e-38
 Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           +  +V   K+AV+GA G +G  LA       +   + L DIA         D+ H     
Sbjct: 1   AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
            T S              +   D+D+V+I AG  +KPG +R +L      I+K +   + 
Sbjct: 60  PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K  PNAI  +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
           V  V+  + G H G + +PL+  AT                 L  +  + + +  ++   
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227

Query: 240 EVVEAKAGKGSA 251
           +++    GKG+ 
Sbjct: 228 KIIN---GKGAT 236

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  134 bits (339), Expect = 7e-38
 Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 34/246 (13%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
                KVA++GA G +G   A  M L    + L L D+      G A D+ H        
Sbjct: 4   VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56

Query: 83  GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
            +MG   L       ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  +
Sbjct: 57  PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
            ++ ++SNPV+    I   + +K       K+ G  T LD +R +   + K  V+V  V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172

Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
             ++G H G + LPL+S               PK N  +ED K + +  +  G  +++  
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229

Query: 246 AGKGSA 251
             KG+ 
Sbjct: 230 -NKGAT 234

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  132 bits (335), Expect = 2e-37
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 34/241 (14%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           KV ++G+ G +G   A  + L  +   + L D+        A D+ H         +   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
            +NPV+    +  +V          ++ G  T LD  R +   A    V    V+  V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
            H G + + ++S A                 L+ ED   + +  +     ++E   GKG+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGA 226

Query: 251 A 251
            
Sbjct: 227 T 227

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  133 bits (336), Expect = 2e-37
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 33/240 (13%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H         +   
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV+    +    F K    + +K+FG  T LD  R +T  A     +   V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
            H G + +P++S A                   + ++   ++T+    E++E    KG+ 
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGAT 226

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  131 bits (331), Expect = 5e-37
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 25/229 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G D     L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +
Sbjct: 61  --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   +  K       ++FG+   LD  R K         N+      ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
            H G ++    S A       + D +A+    +    EV++    KG+ 
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKR---KGAT 212

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  131 bits (332), Expect = 9e-37
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 34/243 (13%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73

Query: 78  RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
              V+   Y           +S +VII AG  ++ G +R +L   N  I K +   + KY
Sbjct: 74  PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
            P   + ++SNPV+    I   V  K   + + ++ G    LD  R +     +  V+  
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182

Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
             +  V+G H G + +P++S                  +   E  K + K+  D   EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241

Query: 243 EAK 245
           + K
Sbjct: 242 KLK 244

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  130 bits (328), Expect = 3e-36
 Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 36/248 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
           +V V GAAG I   L        +  K  P++  L L DI    GV         D    
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62

Query: 76  NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
             +  +A     D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY
Sbjct: 63  LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118

Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V   
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175

Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
           +V   ++ G+   T  P  + A      K     E +              Q  G  V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235

Query: 244 AKAGKGSA 251
           A+    SA
Sbjct: 236 AR-KLSSA 242

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  128 bits (325), Expect = 7e-36
 Identities = 64/246 (26%), Positives = 92/246 (37%), Gaps = 34/246 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
           +VAV GAAG I   L        +L K  P++  L L +I N        GV     D  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                   A          A +D+DV ++    PR PGM R DL   NA I      AI 
Sbjct: 65  FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
           V+ +    V G+   T+   +  A        ++ ++D              G  +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237

Query: 246 AGKGSA 251
            G  SA
Sbjct: 238 -GVSSA 242

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  124 bits (314), Expect = 2e-34
 Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 24/228 (10%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
           + E+    K+ V+G  G +G    L +    +  RL L D++  T G   D+   N  + 
Sbjct: 8   NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66

Query: 81  VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
                         A   S VVI           +  D+   N  + + L  A+  Y  +
Sbjct: 67  EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
           +++ + S P    V I   V  K  T+   ++ G+   LD  R +           +   
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
           V V+G   G   +  +S                  +  +   E++  K
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK 215

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  124 bits (314), Expect = 3e-34
 Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 27/244 (11%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           S E     K+ V+G    +G   A+ + +  L   +AL D+      G   D+ H    +
Sbjct: 15  SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
           +T   V+G  Y            S +V+I AG  ++ G +R +L   N  I K +   I 
Sbjct: 74  HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ P+ +  +             +   K       ++ G    LD  R +     +  V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
              V   V+G H G ++  ++S        K  + +  ++  L   T      VV     
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241

Query: 248 KGSA 251
             + 
Sbjct: 242 VLTY 245

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  123 bits (311), Expect = 8e-34
 Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 33/244 (13%)

Query: 30  KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
           +VAV GAAG IG  L        ++  +  V  L L +I     + A         D   
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62

Query: 75  INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                  A     D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+
Sbjct: 63  PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118

Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
                + V ++ NP N+   IA    K A   N +    +T LD  RAK   A K    V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175

Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
             +    V G+   T+ P    A     P   L D +   K         G  +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234

Query: 248 KGSA 251
             SA
Sbjct: 235 ASSA 238

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  121 bits (306), Expect = 3e-33
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 38/242 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
           KV V+G  G +G   A  + L    S L L D         A D+ H       TR    
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G+         L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + SNPV+    +  ++  +        + G  T LD  R +   A  A V+    +  V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           G H G + +  +S A                   ++    + + T++    ++E   GK 
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223

Query: 250 SA 251
           + 
Sbjct: 224 AT 225

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  120 bits (302), Expect = 4e-32
 Identities = 65/243 (26%), Positives = 89/243 (36%), Gaps = 30/243 (12%)

Query: 30  KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
            +AV GAAG I   L            +  ++ L L     +     GVA    D  +  
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            R    G        +  ED D  ++    PR PGM R  L +IN  I  D   A+    
Sbjct: 93  LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
             N  V ++ NP N+   I     K A     K    +T LD  RAK   A KA V   +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205

Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
           V+   + G+   T +P F  A        E IK         T   Q  G  +++   G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264

Query: 249 GSA 251
            SA
Sbjct: 265 SSA 267

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  117 bits (295), Expect = 2e-31
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 36/243 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
           RK+ ++G  G +G  +A  +    +       D           D          +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           +  +        AL D+DVVI   G  +     P   R       + +V+ + + + +  
Sbjct: 61  INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
            + ++ +ISNPV+    +   +F+    +   K+ G  T LD  R +       +++   
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169

Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
           V+   +G H G +    +S       P   LAD    D+ A+ +  + GG  V+    GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225

Query: 249 GSA 251
           G  
Sbjct: 226 GYT 228

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 55.1 bits (132), Expect = 6e-09
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 25  SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           S+   K+A +G  G  G   +L   L     +   +ALYD+      A     I   S  
Sbjct: 2   SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58

Query: 82  AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
               Y     L +AL  +D+VII                P + G+ +     +  G    
Sbjct: 59  GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118

Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
                 I  ++  AI  Y P + V   +NP++    +  +VF              T   
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178

Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
           +    T   G       ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
            + + G  G    P   L LL  L    + +L LYD         A      I  ++   
Sbjct: 30  SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +       +A  D D V+    V +      D+   +  G+                  
Sbjct: 89  EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148

Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
             V ++   + KY P+A +   SNP 
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 30  KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
           K+A +G            L+ + + L V  L L DI         VG +  R  E AG  
Sbjct: 9   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68

Query: 84  --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
                     +AL+ +D V     V            P K G+   +             
Sbjct: 69  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
             ++ D+   + + CP+A +   +NP 
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
           K+ ++GA G        ++ L K   L  S + L DI       +               
Sbjct: 5   KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63

Query: 84  -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +     L   + D+D VI  A V     + +        G                   
Sbjct: 64  KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123

Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
                     D+   I K  P A     +NP+         +  +       K  G    
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
                      K  +   +V+  V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.97
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	99.97
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	99.97
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.95
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.94
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.93
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.14
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.03
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.77
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.76
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.72
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.71
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.7
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.7
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.69
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.68
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.67
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.66
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.63
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.62
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.61
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.61
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.6
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.6
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.59
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.58
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.56
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.56
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.55
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.55
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.55
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.55
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.54
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.54
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.54
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.52
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.52
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.52
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.52
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.52
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.51
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.5
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.5
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.5
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.49
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.49
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.48
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.48
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.48
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.46
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.46
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.45
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.44
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.43
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.42
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.42
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.4
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.39
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.38
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.38
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.38
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.37
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.37
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.35
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.35
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.35
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.34
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.33
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.33
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.33
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.31
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.31
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.3
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.29
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.28
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.28
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.27
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.26
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.26
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.26
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.26
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.26
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.25
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.25
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.25
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.24
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.23
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.23
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.23
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.22
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.21
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.2
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.2
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.2
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.19
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.19
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.18
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.18
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.17
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.17
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.16
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.16
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.14
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.13
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.13
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.13
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.13
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.12
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.12
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.11
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.09
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.09
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.08
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.08
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.07
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.07
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.07
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.06
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.05
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.04
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.04
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.04
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.04
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.03
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.03
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.03
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.02
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.02
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.02
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.02
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.02
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.01
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.0
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.0
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.99
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.99
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.99
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.98
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.96
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.96
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.96
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.96
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.95
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.95
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.94
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.93
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.93
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.93
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.92
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.92
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.92
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.91
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.91
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.9
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.9
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.9
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.9
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.9
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.89
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.89
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.89
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.88
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.87
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.87
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.86
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.84
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.83
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.83
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.82
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.82
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.81
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.81
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.81
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.81
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.8
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.8
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.8
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.79
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.79
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.79
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.79
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.78
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.78
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.77
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.77
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.76
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.76
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.76
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.75
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.75
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.74
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.74
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.74
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.73
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.73
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.72
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.71
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.71
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.7
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.7
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.69
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.69
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.69
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.69
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.69
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.68
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.68
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.68
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.65
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.65
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.65
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.65
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.65
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.64
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.64
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.64
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.64
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.63
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.63
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.63
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.63
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.63
1spx_A	278	Short-chain reductase family member (5L265); paral	97.63
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.63
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.62
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.62
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.62
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.62
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.62
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.62
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.62
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.61
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.61
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.6
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.6
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.6
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.6
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.59
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.58
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.58
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.58
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.58
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.58
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.57
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.57
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.57
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.56
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.55
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.55
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.55
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.55
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.55
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.55
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.54
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.54
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.53
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.53
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.53
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.53
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.53
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.53
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.53
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.53
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.52
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.52
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.52
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.52
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.52
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.51
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.51
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.51
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.51
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.5
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.5
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.5
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.5
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.5
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.5
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.49
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.49
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.49
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.49
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.49
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.49
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.48
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.48
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.48
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.47
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.47
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.46
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.46
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.46
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.45
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.45
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.45
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.44
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.44
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.44
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.43
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.43
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.43
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.43
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.42
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.41
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.41
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.41
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.41
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.41
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.41
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.4
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.4
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.4
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.39
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.39
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.39
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.39
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.38
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.37
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.37
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.37
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.36
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.36
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.35
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.35
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.34
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.33
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.32
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.32
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.31
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.31
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.3
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.3
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.3
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.29
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.29
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.29
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.28
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.28
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.27
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.27
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.27
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.27
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.26
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.26
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.25
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.25
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.24
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.24
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.24
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.23
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.21
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.2
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.2
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.2
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.29
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.2
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.18
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.18
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.15
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.14
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.14
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.14
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.12
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.12
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.12
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.11
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.1
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.08
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.07
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.07
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.04
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.03
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.02
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.01
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.0
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.0
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.0
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.99
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.99
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.98
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.97
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.96
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.96
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.95
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.94
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.92
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.91
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.91
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.9
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.9
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.9
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.89
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.87
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.87
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.86
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.86
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.85
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.84
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.83
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.83
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.82
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.82
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.8
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.77
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.77
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.76
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.76
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.75
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.75
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.75
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.72
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.71
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.7
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.7
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.69
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.68
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.67
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.67
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.66
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.66
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.63
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.61
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.6
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.59
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.57
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.54
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.53
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.52
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.5
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.5
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.47
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.47
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.47
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.46
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.46
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.44
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.41
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.4
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.4
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.39
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.38
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.38
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.38
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.38
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.37
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.35

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=5.8e-54  Score=385.68  Aligned_cols=226  Identities=61%  Similarity=0.950  Sum_probs=203.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+||||+|+||+++++.|+++ ++.+||+|+|+++ +.|+++||+|...+.++..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999997799999999999887 7788999999985 7799999999765434544332 3446899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHH
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la  186 (256)
                      |++||++|.|++..|++++++++++|.++||+++++++|||+|.++++++++++.+|.+|++||+|+|.||++|++++||
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la  159 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA  159 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887788888844999999999999999999999


Q ss_pred             HHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       187 ~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +++|++|++|+++|||||||+|+||+||++ .+.+++++++++|.++|+++|++|+++|.|++|+++|+|
T Consensus       160 ~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a  228 (312)
T 3hhp_A          160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG  228 (312)
T ss_dssp             HHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHH
T ss_pred             HHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHH
Confidence            999999999999999999778999999998 455688889999999999999999999977788988864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=7.3e-51  Score=366.26  Aligned_cols=228  Identities=65%  Similarity=1.019  Sum_probs=207.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+||||+|+||+++++.|+++++..||+|+|+++.++.++||.|...+.+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999999987899999999878889999997765556654344577778999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHH
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~  188 (256)
                      ++|++|.|++.+|+++++++++.|.+++|++++|++|||+|.+++++++++++.+++|++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988898888877999999999999999999999999


Q ss_pred             cCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       189 l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +|++|++|+++|||||+|++++|+||++++...+++++++++.++++++|++|++.|.|++|+++|+|
T Consensus       161 l~v~~~~v~~~v~G~H~G~~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a  228 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA  228 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHH
T ss_pred             hCcChHhEEEEEccCCCCCcEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHH
Confidence            99999999999999996579999999998754578888999999999999999999977888877653

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=6.9e-51  Score=369.77  Aligned_cols=219  Identities=28%  Similarity=0.436  Sum_probs=185.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++||+|||++|+||+++++.++..|+..||+|+|+++  +++.++||+|..++ .++..   +++++++++|||+||++
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVvit   83 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIVSS   83 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEEEc
Confidence            45799999977999999999999999888999999983  68999999998653 23443   34667899999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~-iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      +|.|+++|++|.|++.+|++++++++++|.++||+++ ++++|||+|++|++   +++.+| +|++||+|+|.||++||+
T Consensus        84 aG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i---~~k~sg-~p~~rv~g~t~LDs~R~~  159 (343)
T 3fi9_A           84 GGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLV---TLIYSG-LKPSQVTTLAGLDSTRLQ  159 (343)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHH---HHHHHT-CCGGGEEEECCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHH---HHHHcC-CCcceEEEecCcHHHHHH
Confidence            9999999999999999999999999999999999996 89999999986654   466676 999999999999999999


Q ss_pred             HHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCCCcce
Q 025206          183 TFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (256)
Q Consensus       183 ~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~  251 (256)
                      ++||+++|++|++|+ ++|||||| +++||+||++++++ +         +++++|++|.++|+++|++|+++||+  |+
T Consensus       160 ~~la~~l~v~~~~v~~~~ViGeHg-ds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~--ss  236 (343)
T 3fi9_A          160 SELAKHFGIKQSLVTNTRTYGGHG-EQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR--SS  236 (343)
T ss_dssp             HHHHHHHTSCGGGEECCCEEESSG-GGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSS--CC
T ss_pred             HHHHHHhCcCHHHcccceEEEcCC-CceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCC--Cc
Confidence            999999999999997 89999997 59999999999852 1         36778999999999999999999964  34


Q ss_pred             eccc
Q 025206          252 TLSM  255 (256)
Q Consensus       252 ~~s~  255 (256)
                      ++|+
T Consensus       237 ~~s~  240 (343)
T 3fi9_A          237 FQSP  240 (343)
T ss_dssp             CHHH
T ss_pred             HHhH
Confidence            4443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=3.1e-50  Score=363.94  Aligned_cols=215  Identities=25%  Similarity=0.375  Sum_probs=186.4

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc-CCCcEEEEecCCccccccCCCCEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~-~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      ..+.+||+|||+ |.||+++++.|+.+++++||+|+|++.  +++.++||+|.. +....... .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            345689999998 999999999999999999999999983  789999999975 22222222 24464 5899999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHH
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R  180 (256)
                      +++|.|++||++|.|++.+|++++++++++|+++||+++++++|||+|.+    ++++++.+++|++||||+ |.||++|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~----t~~~~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDIL----TYVAWKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH----HHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH----HHHHHHHhCCCHHHEEeeccccHHHH
Confidence            99999999999999999999999999999999999999999999999964    444444445999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC------------CCCHHHHHHHHHHHHhhHHHHHhhcCC
Q 025206          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAG  247 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~~  247 (256)
                      +++++|+++|++|++|+++|||||| +|+||+||++++++            .+++++|++|.++|+++|++|+++||.
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeHG-~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~  246 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEHG-DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGY  246 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSS-TTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecCC-CceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcCCC
Confidence            9999999999999999999999996 59999999998742            134567899999999999999999964

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.2e-50  Score=361.11  Aligned_cols=211  Identities=29%  Similarity=0.428  Sum_probs=182.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||| |+||+++++.|+.+++++||+|||+++  ++|+++||+|+..  +...+.. ++.| +++++|||+||++|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~-~~~d-~~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEe-cCCC-HHHhCCCCEEEEec
Confidence            79999997 999999999999999999999999984  7899999999653  2222222 2335 47899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~  183 (256)
                      |.||+|||+|.|++..|++++++++++|.++||+++++++|||+|+||++   +++.+| +|++|+||+ |.||++||++
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i---~~k~sg-~p~~rvig~gT~LDs~R~~~  153 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESG-KPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHH---HHHHSS-CCTTSEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHh---hHHHcC-CChhhEEEeeeEEeHHHHHH
Confidence            99999999999999999999999999999999999999999999986654   456666 999999999 8999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      +|++++++++.  +++|||||| +|+||+||++++.+.   .+++++.++++++|+||+++||   |+++|+
T Consensus       154 ~l~~~~~~~~~--~~~V~G~HG-dt~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~~kG---st~~a~  216 (294)
T 2x0j_A          154 RLYNAGARNIR--RAWIIGEHG-DSMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKRKG---ATIFGP  216 (294)
T ss_dssp             HHHHTTCEEEC--CCCEEBCSS-TTCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHHHHS---SCCHHH
T ss_pred             HHhhcccCCcc--eeEEEecCC-CcEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEecCc---ccchhH
Confidence            99999887643  689999996 599999999998543   2467889999999999999985   455554

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=1.5e-49  Score=360.92  Aligned_cols=233  Identities=30%  Similarity=0.381  Sum_probs=187.9

Q ss_pred             ccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCCCcEEEEecC
Q 025206           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGN   87 (256)
Q Consensus        17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t   87 (256)
                      .++.+.+..+++.||+|+||+|.||+++++.|++.++++     ||+|+|+++    ++|.++||+|+.++.....+. +
T Consensus        13 ~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~   91 (345)
T 4h7p_A           13 EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-T   91 (345)
T ss_dssp             ---------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-E
T ss_pred             cccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-c
Confidence            455677788888999999988999999999999988765     999999984    478899999998776555544 3


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      ++.+++++|||+||++||.||+|||+|.|++..|++++++++++|.+++ |+++++++|||+|+|+++   ++++..+++
T Consensus        92 ~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i---~~~~~~g~~  168 (345)
T 4h7p_A           92 ADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKL  168 (345)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHHTTTCS
T ss_pred             CChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHH---HHHHccCCC
Confidence            4668899999999999999999999999999999999999999999997 889999999999987665   355554466


Q ss_pred             CCcEEEE-eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-----CCCHHHH-HHHHHHHHhhH
Q 025206          167 EKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-----NLADEDI-KALTKRTQDGG  238 (256)
Q Consensus       167 ~~kviG~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-----~~~~~~~-~~i~~~v~~~~  238 (256)
                      +.|+||. |.||++|++++||+++|++|++|+ .+|||||| +|+||+||++++++     .++++++ +++.++++++|
T Consensus       169 ~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG-~t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g  247 (345)
T 4h7p_A          169 NPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHS-STQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRG  247 (345)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSS-TTCEEECTTCEETTEEGGGGCCC------HHHHHHHHH
T ss_pred             CcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCC-CeEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhh
Confidence            6555555 999999999999999999999998 56899997 59999999999863     1344444 57999999999


Q ss_pred             HHHHhhcCCCcceecccC
Q 025206          239 TEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       239 ~~i~~~k~~~~s~~~s~~  256 (256)
                      ++|++.||+  |+++|+|
T Consensus       248 ~eIi~~kg~--ss~~s~a  263 (345)
T 4h7p_A          248 AEIIQLRGL--SSAMSAA  263 (345)
T ss_dssp             HHHHHHHSS--CCCHHHH
T ss_pred             hhhhhcCCC--cchhhHH
Confidence            999999964  4566653

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=4.2e-49  Score=356.46  Aligned_cols=231  Identities=68%  Similarity=1.068  Sum_probs=206.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .++|||+||||+|+||++++..|+.++++.||+|+|+++..+.++||.+...+..+..+.++++++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            35689999996699999999999998877799999998667788999986654445544345577889999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  185 (256)
                      .|+++|++|.|++..|+++++++++++.+++|+++++++|||+|.+++++++++++.+++|++||||+|.||+.|++++|
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887777999999999999999999999


Q ss_pred             HHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       186 a~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      |+++|++|++|+++|||||+|++++|+||++++...+++++++++.++++++|++|++.|.|++|+++|+|
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a  236 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMA  236 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHH
T ss_pred             HHHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHH
Confidence            99999999999999999996679999999999865678888999999999999999999866777877653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=4.7e-50  Score=360.56  Aligned_cols=217  Identities=29%  Similarity=0.478  Sum_probs=183.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |.||+++++.|+++++++||+|+|+++  ++++++||+|..+  ....++.. + +.+++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~-~-~~~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG-T-NDYGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE-E-SSSGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE-C-CCHHHhCCCCEEEECC
Confidence            79999998 999999999999999989999999985  6889999999753  12233321 2 2367999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R~~~  183 (256)
                      |.|++||++|.|++..|+++++++++.|.++||+++++++|||+|.+|++   +++.+| +|++||||+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~---~~k~~g-~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYV---AYEASG-FPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHH---HHHHHT-CCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHH---HHHhcC-CChHHEEeecCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999976654   355555 9999999996 999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----CCCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      ++|+++|++|++|+++|||||| +|+||+||++++++     .++++++++|.++|+++|++|+++|| + |+++|+
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg-~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~kg-~-sa~~a~  227 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHG-DTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLMG-T-SAWYAP  227 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSG-GGEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHS-S-CCCHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCC-CcEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhccC-C-cHHHHH
Confidence            9999999999999999999997 59999999999853     24678889999999999999999995 4 677764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=9.1e-50  Score=360.16  Aligned_cols=211  Identities=27%  Similarity=0.408  Sum_probs=170.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++||+|||+ |.||+++++.|+.+++++||+|+|+++  ++|.++||.|.... ..++...+  + +++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~--~-~~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSA--E-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC--C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEEC--c-HHHhcCCCEEEEC
Confidence            4579999998 999999999999999999999999983  68999999997531 23444432  3 5789999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      ||.|++||++|.|++.+|++++++++++|.++||+++++++|||+|.    +++++++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi----~t~~~~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI----LTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHH----HHHHHHHhcCCCHHHeeeecccCcHHHHH
Confidence            99999999999999999999999999999999999999999999995    4445444445999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC----------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~----------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| +|+||+||++++++ ++          +++++++|.++|+++|++|+++||
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHG-dt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG  233 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKG  233 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCC-CeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999996 69999999999853 21          566789999999999999999984

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=6.4e-49  Score=353.45  Aligned_cols=218  Identities=37%  Similarity=0.587  Sum_probs=190.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--C--chhHHHHHhccc----CCCcEEEEecCCccccccCCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--N--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      +.+||+|||+ |.+|+++++.|+..|+ ++|+|+|++  +  +++.++|+.|..    ...++..   +++ +++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSD-YADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESC-GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCC-HHHhCCCC
Confidence            4579999998 9999999999999998 899999998  2  578889999864    2334443   334 57899999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eech
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD  177 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~ld  177 (256)
                      +||+++|.|++||++|.|++.+|++++++++++|.++||+++++++|||+|.++++   +++.+| +|++||||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~---~~k~sg-~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYS---VFKEAG-FPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH---HHHHHC-CCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHH---HHHhcC-CChHHEEeeccCcH
Confidence            99999999999999999999999999999999999999999999999999976654   355566 999999999 8999


Q ss_pred             HHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----CCCHHHHHHHHHHHHhhHHHHHhhcCCCccee
Q 025206          178 VVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~  252 (256)
                      ++|++++||+++|++|++|+++|||||| +|+||+||++++++     .++++++++|.++|+++|++|++.+ |++|++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg-~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHG-DDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSG-GGCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCC-CcceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            9999999999999999999999999996 59999999999853     2577888999999999999999954 455777


Q ss_pred             cccC
Q 025206          253 LSMA  256 (256)
Q Consensus       253 ~s~~  256 (256)
                      +|+|
T Consensus       235 ~a~a  238 (315)
T 3tl2_A          235 YAPA  238 (315)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=6.3e-49  Score=354.90  Aligned_cols=217  Identities=24%  Similarity=0.330  Sum_probs=188.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|+++  +++.++||+|....  ..++.+.  .+ +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEEE
Confidence            4679999998 999999999999999989999999983  68999999997321  2345443  23 578999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      ++|.|+++|++|.|++..|++++++++++|.++||+++++++|||+|.++    +++++.+++|++||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t----~~~~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILT----YATWKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHH----HHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHH----HHHHHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999644    44433444999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHHhhcCCCcc
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s  250 (256)
                      +++||+++|++|++|+++|||||| +|+||+||++++++ +          ++++++++|.++|+++|++|+++||   +
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG-~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG---~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHG-DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKG---A  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHS---C
T ss_pred             HHHHHHHhCCCHHHceeeeeecCC-CceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCCC---C
Confidence            999999999999999999999996 59999999999853 2          1566789999999999999999984   3


Q ss_pred             eeccc
Q 025206          251 ATLSM  255 (256)
Q Consensus       251 ~~~s~  255 (256)
                      +++|+
T Consensus       232 t~~a~  236 (326)
T 3pqe_A          232 TYYGV  236 (326)
T ss_dssp             CCHHH
T ss_pred             cHHHH
Confidence            45543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=9.7e-49  Score=349.17  Aligned_cols=212  Identities=28%  Similarity=0.383  Sum_probs=184.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||| |.+|+++++.|+.++++++|+|+|+++  ++++++|+.|..  ++...++.. ++| +++++|||+||+++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~-t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE-eCC-HHHhCCCCEEEECC
Confidence            69999999 999999999999999989999999984  678899999865  222233322 345 78999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~  183 (256)
                      |.|+++|++|.|++.+|++++++++++|.++||+++++++|||+|.|+    +++++.++||++||||+ |.||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t----~~~~k~~g~p~~rviG~gt~LD~~R~~~  153 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMT----YIMWKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHH----HHHHHHSCCCTTSEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHH----HHHHHhcCCCHHHEeecccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999644    44444455999999999 7999999999


Q ss_pred             HHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceecccC
Q 025206          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (256)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~~  256 (256)
                      +|| ++|++|++ +++|||||| +|+||+||++++++. +  ++++|.++++++|++|+++||   |+++|+|
T Consensus       154 ~la-~l~v~~~~-~~~V~G~Hg-~t~vp~~s~~~v~g~-~--~~~~~~~~v~~~g~eii~~kG---~t~~~~a  217 (294)
T 1oju_A          154 RLY-NAGARNIR-RAWIIGEHG-DSMFVAKSLADFDGE-V--DWEAVENDVRFVAAEVIKRKG---ATIFGPA  217 (294)
T ss_dssp             HHH-HTTCBSCC-CCCEEBCSS-TTCEECGGGCCCBSC-C--CHHHHHHHHHTTHHHHHHHHS---SCCHHHH
T ss_pred             HHH-HhCCCccC-ceEEEecCC-CceeeecccceECCc-C--hHHHHHHHHHHHHHHHHHhcC---CcchHHH
Confidence            999 99999999 999999996 599999999998642 2  588999999999999999995   4566643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=2.2e-48  Score=350.86  Aligned_cols=219  Identities=38%  Similarity=0.613  Sum_probs=191.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC----CCcEEEEecCCccccccCCCCE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      |+++||+|||+ |.+|+++++.|+.+++. +|+|+|+++  +++.++||+|...    +.++..   +++ +++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCE
Confidence            45689999998 99999999999999987 999999984  5788999999742    233432   335 479999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echH
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDV  178 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds  178 (256)
                      ||+++|.|++||++|.|++.+|++++++++++|.++||+++++++|||+|.++    +++++.+++|++||||+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t----~~~~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMV----NMLQKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHH----HHHHHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHH----HHHHHhcCCCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999644    344344459999999997 8999


Q ss_pred             HHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCCC
Q 025206          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (256)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~~  248 (256)
                      +|++++||+++|++|++|+++|||||| +|+||+||++++++ +         ++++++++|.++++++|++|++.| |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHG-DTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSG-GGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcC-CceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            999999999999999999999999995 69999999999853 1         367788999999999999999998 67


Q ss_pred             cceecccC
Q 025206          249 GSATLSMA  256 (256)
Q Consensus       249 ~s~~~s~~  256 (256)
                      +|+++|+|
T Consensus       231 gsa~~~~a  238 (321)
T 3p7m_A          231 GSAYYAPA  238 (321)
T ss_dssp             SCCCHHHH
T ss_pred             CChHHHHH
Confidence            78888864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.7e-48  Score=351.90  Aligned_cols=220  Identities=37%  Similarity=0.601  Sum_probs=186.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC----CCcEEEEecCCccccccCCCC
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~eal~~aD   98 (256)
                      .|+++||+|||| |.+|+++++.|+..++. ||+|+|+++  +++.++||.|...    +.++..   ++|+ ++++|||
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~aD   77 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGAD   77 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTCS
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCCC
Confidence            356789999998 99999999999999986 999999985  6788999998752    334442   3454 7999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-ech
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD  177 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~ld  177 (256)
                      +||+++|.|+++|++|.|++.+|++++++++++|.++||++++|++|||+|.++++   +++.++ +|++||||+| .||
T Consensus        78 iVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~---~~k~sg-~p~~rviG~~~~LD  153 (324)
T 3gvi_A           78 VVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWA---LQKFSG-LPAHKVVGMAGVLD  153 (324)
T ss_dssp             EEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH---HHHHHC-CCGGGEEECCHHHH
T ss_pred             EEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHH---HHHhcC-CCHHHEEeecCccH
Confidence            99999999999999999999999999999999999999999999999999975543   344454 9999999997 899


Q ss_pred             HHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCC
Q 025206          178 VVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAG  247 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~  247 (256)
                      ++|++++||+++|++|++|+++|||||| +|+||+||++++++ +         ++++++++|.++++++|++|++.| |
T Consensus       154 ~~R~~~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g  231 (324)
T 3gvi_A          154 SARFRYFLSEEFNVSVEDVTVFVLGGHG-DSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-K  231 (324)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHhCcCHHHCeEEEEcCCC-CceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-C
Confidence            9999999999999999999999999996 69999999999853 1         367788999999999999999998 6


Q ss_pred             CcceecccC
Q 025206          248 KGSATLSMA  256 (256)
Q Consensus       248 ~~s~~~s~~  256 (256)
                      ++|+++|+|
T Consensus       232 kgsa~~~~a  240 (324)
T 3gvi_A          232 TGSAFYAPA  240 (324)
T ss_dssp             SCCCCHHHH
T ss_pred             CCcHHHHHH
Confidence            778888764

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=1.3e-47  Score=350.65  Aligned_cols=222  Identities=28%  Similarity=0.298  Sum_probs=184.4

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccE---EEEEeCC--C----chhHHHHHhcccCCC--cEEEEecCCc
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR---LALYDIA--N----TPGVAADVGHINTRS--EVAGYMGNDQ   89 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~e---V~LiD~~--~----~~g~~~dl~~~~~~~--~v~~~~~t~d   89 (256)
                      ..+.+.+++||+||||+|+||+++++.|+.+++++|   |+|+|.+  +    ++|+++||+|+.++.  .+.+.  + +
T Consensus        25 ~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~  101 (375)
T 7mdh_A           25 KTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-D  101 (375)
T ss_dssp             ----CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-C
T ss_pred             hHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-C
Confidence            445555778999999779999999999999999887   7776654  3    589999999987542  34432  3 4


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      .+++++|||+||++||.|++||++|.|++..|++++++++++|.++ +|++++|++|||+|+||++   +++.+| ++++
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~i---a~k~sg-~~~~  177 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALI---CLKNAP-DIPA  177 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCT-TSCG
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHH---HHHHcC-CCCc
Confidence            4689999999999999999999999999999999999999999998 7999999999999976554   355566 5556


Q ss_pred             cEEEE-eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCC-C----CCHHHH--HHHHHHHHhhHH
Q 025206          169 KLFGV-TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADEDI--KALTKRTQDGGT  239 (256)
Q Consensus       169 kviG~-t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~--~~i~~~v~~~~~  239 (256)
                      |+||+ |.||++||+++||+++|++|.+|+. +|||||| +|+||+||++++++ +    ..+++|  ++|.++|+++|+
T Consensus       178 rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHg-dt~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~  256 (375)
T 7mdh_A          178 KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGG  256 (375)
T ss_dssp             GGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHH
T ss_pred             cEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCC-CceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHH
Confidence            77888 8999999999999999999999995 8999997 69999999999853 2    222333  789999999999


Q ss_pred             HHHhhcCCCcce
Q 025206          240 EVVEAKAGKGSA  251 (256)
Q Consensus       240 ~i~~~k~~~~s~  251 (256)
                      +||++|| .+|+
T Consensus       257 eII~~kG-~ts~  267 (375)
T 7mdh_A          257 ALIQKWG-RSSA  267 (375)
T ss_dssp             HHHHHTS-SCCH
T ss_pred             HHHHhcC-CCch
Confidence            9999995 4444

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.9e-47  Score=342.47  Aligned_cols=211  Identities=24%  Similarity=0.393  Sum_probs=175.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++||+|||| |+||+++++.|+.+++++||+|+|++  ++++.++||.|... ...+++..   +.+++++|||+||++
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~---~~~~a~~~aDvVii~   79 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS---GEYSDCKDADLVVIT   79 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE---CCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEC
Confidence            4579999998 99999999999999999999999998  37788999998752 12344433   236799999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++++|++|||+|.    +++++++.+++|++||||+ |.||++|++
T Consensus        80 ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~----~t~~~~k~s~~p~~rviG~gt~LD~~R~~  155 (318)
T 1ez4_A           80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDI----LTYATWKFSGFPKERVIGSGTSLDSSRLR  155 (318)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHH----HHHHHHHHcCCCHHHEEeccccchHHHHH
Confidence            99999999999999999999999999999999999999999999996    4445444445999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| ++++|+||++++++          .++++.++++.++++++|++|+++||
T Consensus       156 ~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  228 (318)
T 1ez4_A          156 VALGKQFNVDPRSVDAYIMGEHG-DSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKG  228 (318)
T ss_dssp             HHHHHHHTCCGGGEECCEESSSS-SSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCcChhHEEEEEecccC-CceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCC
Confidence            99999999999999999999996 69999999998842          14566779999999999999999885

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.2e-46  Score=340.40  Aligned_cols=211  Identities=28%  Similarity=0.415  Sum_probs=180.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++||+|||| |+||+++++.|+.+++++||+|+|++  ++++.++||.|... ...+++..   +.+++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS---AEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE---CCGGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEc
Confidence            4579999998 99999999999999999999999998  36788999998751 12344433   236789999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++++|++|||+|.+    ++++++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~----t~~~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDIL----TYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHH----HHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHH----HHHHHHHcCCCHHHEEEccccchHHHHH
Confidence            999999999999999999999999999999999999999999999964    445444445999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| ++++|+||++++++ +          ++++.++++.++++++|++|+++||
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG  233 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKG  233 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHHHhCCChhheEEEEecccC-CceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCC
Confidence            99999999999999999999996 69999999998742 1          4556678999999999999999885

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=3.5e-46  Score=335.16  Aligned_cols=209  Identities=23%  Similarity=0.366  Sum_probs=183.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||| |+||+++++.|+++++++||+|+|+++  +++.++||.|... ...+++..  .+ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999983  6788999998752 12344433  23 678999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .|+++|++|.|++.+|++++++++++|+++||++++|++|||+|.++++   +++.+ ++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~---~~k~s-~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQV---AYALS-GLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH---HHHHH-TCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHH---HHHHc-CCCHHHEEecCcchhHHHHHHH
Confidence            9999999999999999999999999999999999999999999964432   34555 4999999999 99999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCCC------------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~------------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +|+++|++|++|+++|||||| ++++|+||++++++.            ++++.++++.++++++|++|++.||
T Consensus       153 la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  225 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHG-DSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG  225 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHhCcCHHHeEEEEecccC-CccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccC
Confidence            999999999999999999996 599999999987421            3566779999999999999999985

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.8e-46  Score=339.92  Aligned_cols=220  Identities=28%  Similarity=0.371  Sum_probs=182.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccE-----EEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~e-----V~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a   97 (256)
                      +++||+|+||+|+||+++++.|+.+++++|     |+|+|+++    ++|.++||+|+.++. +.....+.+.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            468999999779999999999999999888     99999973    589999999976442 22222234567899999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-ee
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~-~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~  175 (256)
                      |+||++||.|+++|++|.|++..|+++++++++++.+++|++ ++|++|||+|+|+++   +++.++++|++ +||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~---~~~~~~~~p~~-~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLT---ASKSAPSIPKE-NFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGG-GEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHH---HHHHcCCCCcC-EEEEEEh
Confidence            999999999999999999999999999999999999999987 799999999975543   34445545555 4665 89


Q ss_pred             chHHHHHHHHHHHcCCCCCceeEE-EEeCCCCCceeeccccccc--C-CCCC------HHH--HHHHHHHHHhhHHHHHh
Q 025206          176 LDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATP--K-ANLA------DED--IKALTKRTQDGGTEVVE  243 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~vp~~s~~~~--~-~~~~------~~~--~~~i~~~v~~~~~~i~~  243 (256)
                      ||++|++++||+++|++|++|+++ ||||||+ |+||+||++++  + .+++      +++  .+++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999975 99999999975  2 2221      122  36899999999999999


Q ss_pred             hcCCCcceecc
Q 025206          244 AKAGKGSATLS  254 (256)
Q Consensus       244 ~k~~~~s~~~s  254 (256)
                      +|+++  +++|
T Consensus       236 ~k~~s--sa~~  244 (333)
T 5mdh_A          236 ARKLS--SAMS  244 (333)
T ss_dssp             HHSSC--CCHH
T ss_pred             ccCch--HHHH
Confidence            88554  3444

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.2e-47  Score=346.21  Aligned_cols=208  Identities=21%  Similarity=0.283  Sum_probs=179.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc-CCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~-~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ..+||+|||+ |.||+++++.++.+|+++||+|+|+++  +++.++||+|.. +....++. .++|+ ++++|||+||++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~d~-~~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGKDY-SVSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EESSS-CSCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcCCH-HHhCCCCEEEEe
Confidence            4579999998 999999999999999999999999984  689999999974 22212222 24465 469999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      +|.|++||++|.|++.+|++++++++++|.+++|+++++++|||+|.++++   +++.+| +|++||||+ |.||++|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~---~~k~sg-~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQ---DWKLSG-LPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH---HHHHHC-CCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHH---HHHHhC-CCHHHeecccCchhHHHHH
Confidence            999999999999999999999999999999999999999999999975543   355555 999999999 689999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHH-HHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDI-KALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~-~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      +++|+++|++|++|+++|||||| +|+||+||+          +| ++|.++|+++|++|+++||   ++++++
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~Hg-~t~vp~~S~----------~~~~~~~~~v~~~g~eii~~kg---~t~~a~  232 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQHG-DSVPSVWSG----------MWDAKLHKDVVDSAYEVIKLKG---YTSWAI  232 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSSS-TTCCEEEEE----------EEETTEEHHHHHCCCTTSTTCH---HHHHHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCCC-Cceeeechh----------hHHHHHHHHHHHHHHHHHHccC---Ccceee
Confidence            99999999999999999999996 599999998          23 6889999999999999884   455543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=9.5e-46  Score=333.33  Aligned_cols=212  Identities=25%  Similarity=0.369  Sum_probs=184.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      ++++||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++|+.|...  ...+++..   +.+++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---~~~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA---GEYSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE---CCGGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe---CCHHHhCCCCEEE
Confidence            45689999998 999999999999999888999999983  6788899988631  12344433   2367899999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHH
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R  180 (256)
                      +++|.|+++|++|.|++.+|++++++++++|.++||++++|++|||+|.+    ++++++.+++|++||||+ |.||++|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~----t~~~~k~~~~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDIL----AYATWKFSGLPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHH----HHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHH----HHHHHHHhCCCHHHEEecCccccHHH
Confidence            99999999999999999999999999999999999999999999999964    445444445999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++++|+++|++|++|+++|||||| ++++|+||++++++ +         ++++.++++.++++++|++|+++||
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  230 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEHG-DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKG  230 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSS-TTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHHHHHhCcChhhEEEEEEecCC-CCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCC
Confidence            9999999999999999999999996 59999999998742 1         3455678999999999999999985

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=9.6e-46  Score=332.06  Aligned_cols=206  Identities=28%  Similarity=0.509  Sum_probs=182.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC----CCcEEEEecCCccccccCCCCEEEEe
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ||+|||| |+||+++++.++.+++ +||+|+|+++  +++.++|+.|...    ..++..   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999998 9999999999999898 8999999984  6788999998632    233442   3464 799999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      +|.|+++|++|.|++.+|++++++++++|+++||++++|++|||+|.+    ++++++.+++|++||||+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~----t~~~~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAM----TYVMYKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH----HHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHH----HHHHHHhcCCChhhEEEecccchHHHHH
Confidence            999999999999999999999999999999999999999999999964    444444445999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| ++++|+||++++++ +    +++++++++.++++++|++|++.||
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  218 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHG-QKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRG  218 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHHHhCcChhHeEEEEEeccC-CceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCCC
Confidence            99999999999999999999997 69999999999853 2    4677789999999999999999884

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.3e-45  Score=330.92  Aligned_cols=211  Identities=30%  Similarity=0.464  Sum_probs=175.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++||+|||+ |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ...+++..  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999998 999999999999999999999999983  7888999998752 12444432  24 6789999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      +|.|+++|++|.|++.+|+++++++++.|.+++|++++|++|||+|.++++   +++.+ ++|++||||+ |.||++|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~---~~k~s-~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYM---IQKWS-GLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHH---HHHHH-TCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHH---HHHHc-CCCHHHEeccCCchHHHHHH
Confidence            999999999999999999999999999999999999999999999964432   34555 4999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---C--------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L--------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---~--------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| ++++|+||++++++ +   +        +++.++++.++++++|++|++.||
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  232 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHG-DSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKG  232 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSS-SSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhCCCHHHeEEEEecccC-CcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCC
Confidence            99999999999999999999996 69999999998742 2   1        233468999999999999999885

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=1.4e-44  Score=323.70  Aligned_cols=210  Identities=30%  Similarity=0.420  Sum_probs=183.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC--CC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~--~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      |||+||||+|+||++++..|+.+++..|++|+|+  +.  +++.++|+.|... ...++...+  + +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~--~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG--G-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC--C-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeC--C-HHHhCCCCEEEEc
Confidence            6999999779999999999999998889999999  63  5677899998643 223444332  3 6789999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~  182 (256)
                      ||.|+++|++|.|++..|+++++++++++++++|+++++++|||+|.    +++++++.+++|++||||+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~----~~~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL----LNRHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHH----HHHHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHH----HHHHHHHHcCCCHHHeeecccchhHHHHH
Confidence            99999999999999999999999999999999999999999999995    4455555556999999999 999999999


Q ss_pred             HHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC--CC-CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA--NL-ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~--~~-~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +++|+++|++|++|+++|||||| ++++|+||++++++  .+ ++++++++.++++++|++|++.||
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~~kg  219 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHG-DAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG  219 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCC-CccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHhcCC
Confidence            99999999999999999999996 59999999998742  23 677789999999999999999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.2e-44  Score=325.00  Aligned_cols=213  Identities=30%  Similarity=0.530  Sum_probs=176.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      +||+|||| |+||+++++.|+..|+++ |+|+|+++  +++.++|+.|..    ...+++.   ++|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999998 999999999999999764 99999984  677789999853    1233442   3465 78999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      ++|.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|.+    ++++++.+++|++||||+ |.||++|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~----t~~~~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAM----TYLAAEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHH----HHHHHHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHH----HHHHHHHcCCCHHHEEECCcchHHHHH
Confidence            9999999999999999999999999999999999999999999999964    444444445999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHh--hcCCCcceecc
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVE--AKAGKGSATLS  254 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~--~k~~~~s~~~s  254 (256)
                      ++++|+++|++|++|+++|||||| ++++|+||++++++ +    +++++++++.++++++|++|++  .||   |+++|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~kg---s~~~~  228 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHG-DEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTG---SAYYA  228 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSG-GGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSC---CCCHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcC-CceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhhccCC---CcHHH
Confidence            999999999999999999999997 69999999998842 2    4677889999999999999999  453   45555


Q ss_pred             c
Q 025206          255 M  255 (256)
Q Consensus       255 ~  255 (256)
                      .
T Consensus       229 ~  229 (309)
T 1ur5_A          229 P  229 (309)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=2.5e-44  Score=323.94  Aligned_cols=211  Identities=25%  Similarity=0.328  Sum_probs=182.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      +++||+|||+ |.||+++++.|+.+++++||+|+|+++  +++.++|+.|....  ..+++..   +.+++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH---GDYDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE---CCGGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc---CcHHHhCCCCEEEE
Confidence            4579999998 999999999999989888999999984  67778999986431  1344433   23578999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      ++|.++++|++|.|++.+|.++++++++++++++|+++++++|||+|.++    ++.++.+++|++||||+ |.||++|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~----~~~~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILT----YATWKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHH----HHHHHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHH----HHHHHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999644    44433334999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      ++++|+++|++|++|+++|||||| ++++|+||++++++ +          +++++++++.++++++|++|++.||
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  231 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHG-DTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKG  231 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCHHHeEEEEecccC-CceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccC
Confidence            999999999999999999999996 59999999998742 1          2345578999999999999999985

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=1.2e-44  Score=325.57  Aligned_cols=218  Identities=29%  Similarity=0.486  Sum_probs=182.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC--CC--chhHHHHHhcccC-C-CcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-R-SEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~--~~--~~g~~~dl~~~~~-~-~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+||||+|+||+++++.|+.+++..|++|+|+  +.  +++.++|+.|... . ..+++..++++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999999998889999999  63  5788899998642 1 233433222236789999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      +||.|+++|++|.+++..|+++++++++++++++ +++++++|||+|.++++   +++.+ ++|++|+||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~---~~k~~-~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYK---ALVDS-KFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHH---HHHHH-CCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHH---HHHhh-CcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 99999999999964433   34544 4999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C------CCHHHHHHHHHHHHhhHHHHHhhcCCCcceecc
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s  254 (256)
                      ++++|+++|++|++|+++|||||| ++++|+||++++++ +      +++++++++.++++++|++|++.||   |+++|
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg---s~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHG-DSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKG---GSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccC-CcccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecCCC---CcHHH
Confidence            999999999999999999999996 69999999998843 1      2556689999999999999999774   45555


Q ss_pred             c
Q 025206          255 M  255 (256)
Q Consensus       255 ~  255 (256)
                      +
T Consensus       232 ~  232 (313)
T 1hye_A          232 P  232 (313)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=8.1e-44  Score=318.77  Aligned_cols=208  Identities=21%  Similarity=0.304  Sum_probs=173.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +++||+|||| |.+|+.+++.++.+++++||+|+|+++ +.+.++|+.|...+ +++.   ++|+ ++++|||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~---t~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEI---SKDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEE---ESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEE---eCCH-HHHCCCCEEEEcCC
Confidence            3479999998 999999999999999999999999985 66778899985443 5654   3465 78999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .+ ++|++|.|++.+|++++++++++|+++||++++|++|||+|.    +++++++.+++|++||||+ |.||++|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~----~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEI----MTYVTWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHH----HHHHHHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 799999999999999999999999999999999999999994    5556555555999999999 99999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceeccc
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~s~  255 (256)
                      +|+++|++|++|+++|||||| ++++|+||+..   .+   ..+++.++++++|++|++.||   |+++|+
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg-~s~~p~~s~~~---~~---~~~~~~~~~~~~g~eii~~kG---st~~~~  222 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQG-EDKVLTWSGQE---EV---VSHTSQVQLSNRAMELLRVKG---QRSWSV  222 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCS-SSCEEEEBCSS---CC---CCHHHHHHHHHHHHTTSSSCC---CCHHHH
T ss_pred             HHHHcCCChHHeEEEEecCCC-CCccccccccc---cc---cHHHHHHHHHHHHHHHHHccC---chHHhH
Confidence            999999999999999999997 58999999853   12   125788889999999999774   455554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.1e-42  Score=313.92  Aligned_cols=215  Identities=31%  Similarity=0.530  Sum_probs=184.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +++||+|||| |++|++++..|+..|+++ |+|+|+++  +++..+|+.+..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            4579999998 999999999999999864 99999984  577788888752    2333442   3566 799999999


Q ss_pred             EEecCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-e
Q 025206          101 IIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (256)
Q Consensus       101 Ii~ag~~~~~g~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t  174 (256)
                      |+++|.|+++|++     |.|++.+|++++++++++|+++||++++|++|||++.+    +++.++.++||++||||+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~----t~~~~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVM----VQLLHQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHH----HHHHHHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHH----HHHHHHhcCCChHHEEeccC
Confidence            9999999999998     99999999999999999999999999999999999964    455544444999999999 5


Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHhh
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~  244 (256)
                      .||++|++++||+++|++|++|+++|||||| ++++|.||++.+++          .+++++++++.++++++|++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHG-NKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCC-CcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999997 69999999988742          146666889999999999999999


Q ss_pred             cCCCcceeccc
Q 025206          245 KAGKGSATLSM  255 (256)
Q Consensus       245 k~~~~s~~~s~  255 (256)
                      ||   |+++|+
T Consensus       232 kg---s~~~~~  239 (322)
T 1t2d_A          232 HA---SPYVAP  239 (322)
T ss_dssp             TS---SCCHHH
T ss_pred             cC---chHHHH
Confidence            85   455544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1e-42  Score=314.86  Aligned_cols=216  Identities=37%  Similarity=0.594  Sum_probs=183.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC----CCcEEEEecCCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      ++||+|||| |.+|++++..|+..|++ +|+|+|+++  +++.++|+.|...    +.+++.   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            469999998 99999999999999986 499999984  5666778877531    234443   4566 7999999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe-echHHH
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t-~lds~R  180 (256)
                      +++|.|+++|++|.|++.+|++++++++++|.++||++++|++|||+|.+    +++.++.+++||+||+|+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~----t~~~~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAM----VYYFKEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH----HHHHHHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHH----HHHHHHhcCCChhhEEEeCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999964    4555444559999999995 899999


Q ss_pred             HHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---------CCHHHHHHHHHHHHhhHHHHHhhcCCCcc
Q 025206          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~~~~s  250 (256)
                      +++++|+++|++|++|+++|||||| ++++|+||++++++ +         +++++++++.++++++|++|++.. +++|
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHG-DEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCC-CceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            9999999999999999999999997 69999999998743 1         356667899999999999999953 3345


Q ss_pred             eeccc
Q 025206          251 ATLSM  255 (256)
Q Consensus       251 ~~~s~  255 (256)
                      +++|+
T Consensus       242 ~~~~~  246 (328)
T 2hjr_A          242 AFYAP  246 (328)
T ss_dssp             CCHHH
T ss_pred             hHHHH
Confidence            66553

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.5e-42  Score=313.95  Aligned_cols=215  Identities=26%  Similarity=0.338  Sum_probs=182.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCC----C--chhHHHHHhcccCCCcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA----N--TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~----~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~   95 (256)
                      ++|||+||||+|+||+++++.|+.++++     .||+|+|++    .  +.+.++||.|...+.... ...+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~-i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAG-MTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEE-EEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCc-EEEecCcHHHhC
Confidence            4689999998899999999999998875     499999997    3  568899999964332122 222457788999


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      |||+||++||.++++|++|.|++.+|+++++++++++.++| |++++|++|||+|.++++   +++.+++||++|++|+|
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~---~~~~~~~~p~~~v~g~t  159 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYI---AMKSAPSLPAKNFTAML  159 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEECC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHH---HHHHcCCCCHHHEEEee
Confidence            99999999999999999999999999999999999999997 999999999999964443   23445369999999999


Q ss_pred             echHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCC-C----CCHHH--HHHHHHHHHhhHHHHHhhcC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k~  246 (256)
                      .||+.|+++++|+++|++|++|++ +|||||| ++++|+||++++++ +    +++++  .+++.++++++|++|++.||
T Consensus       160 ~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg-~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kg  238 (329)
T 1b8p_A          160 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS-PTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARG  238 (329)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS-TTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHhCcCHHHceEEEEEeccC-CcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhccC
Confidence            999999999999999999999994 6899997 59999999999853 2    22223  47899999999999999996

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=2.2e-42  Score=313.13  Aligned_cols=215  Identities=28%  Similarity=0.529  Sum_probs=183.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +|||+|||| |.+|++++..|+..|++ +|+|+|+++  +++.++|+.|..    .+.+++.   ++|++++++|||+||
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiVi   83 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCVI   83 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEEE
Confidence            479999998 99999999999998875 599999985  566667887653    2234443   457777999999999


Q ss_pred             EecCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-ee
Q 025206          102 IPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (256)
Q Consensus       102 i~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~  175 (256)
                      +++|.|+++|+     +|.|++.+|++++++++++|+++||++++|++|||++.+    +++.++.+++|++||+|+ |.
T Consensus        84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~----t~~~~~~~~~~~~rviG~gt~  159 (331)
T 1pzg_A           84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCM----VKVMCEASGVPTNMICGMACM  159 (331)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH----HHHHHHHHCCCGGGEEECCHH
T ss_pred             EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHH----HHHHHHhcCCChhcEEeccch
Confidence            99999999999     999999999999999999999999999999999999964    455444444999999999 69


Q ss_pred             chHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCC----------CCHHHHHHHHHHHHhhHHHHHh--
Q 025206          176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVE--  243 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~----------~~~~~~~~i~~~v~~~~~~i~~--  243 (256)
                      ||++|++++||+++|++|++|+++|||+|| +++||+||++++++.          ++++.++++.++++++|++|++  
T Consensus       160 LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg-~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~  238 (331)
T 1pzg_A          160 LDSGRFRRYVADALSVSPRDVQATVIGTHG-DCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL  238 (331)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHceEEEecCCC-CCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhh
Confidence            999999999999999999999999999997 699999999987431          4556678899999999999999  


Q ss_pred             hcCCCcceeccc
Q 025206          244 AKAGKGSATLSM  255 (256)
Q Consensus       244 ~k~~~~s~~~s~  255 (256)
                      +||   |+++|+
T Consensus       239 ~kg---st~~~~  247 (331)
T 1pzg_A          239 GQG---SAYYAP  247 (331)
T ss_dssp             SSS---CCCHHH
T ss_pred             cCC---CccchH
Confidence            453   566654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=7.5e-41  Score=300.41  Aligned_cols=214  Identities=35%  Similarity=0.562  Sum_probs=181.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+|||+ |.+|++++..|+.++...+|+|+|+++  +++..+|+.|..    ...++..   ++|++ ++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~-~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDYA-DTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCGG-GGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCHH-HHCCCCEEEE
Confidence            69999998 999999999999875555999999984  466667777642    1223432   34654 5999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~  181 (256)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||++.+    ++++++.+++|++|+||+ |.||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~----~~~~~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIM----THVAWVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHH----HHHHHHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHH----HHHHHHhcCCChHHEEECCCchHHHHH
Confidence            9999999999999999999999999999999999999999999999964    444444344999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----CCHHHHHHHHHHHHhhHHHHHh--hcCCCcceecc
Q 025206          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVE--AKAGKGSATLS  254 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~~~~i~~~v~~~~~~i~~--~k~~~~s~~~s  254 (256)
                      ++++|+++|+++++|+++|||||| ++++|+||++++++ +    +++++++++.++++++|++|++  .||   |+++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~~kg---s~~~~  227 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHG-DAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQG---SAFYA  227 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHSSS---CCCHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccC-CcEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhhcCCC---CcHHH
Confidence            999999999999999999999997 69999999999853 2    4677789999999999999999  453   56555


Q ss_pred             c
Q 025206          255 M  255 (256)
Q Consensus       255 ~  255 (256)
                      +
T Consensus       228 ~  228 (310)
T 1guz_A          228 P  228 (310)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=2.8e-41  Score=302.51  Aligned_cols=207  Identities=27%  Similarity=0.386  Sum_probs=158.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||| |.+|++++..|+..|++++|+|+|+++  +++.++|+.|... ....+...  ++ ++++++||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999998 999999999999999989999999984  5677889987652 12233322  24 468999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .|+++|++|.|++.+|++++++++++|.+++|+++++++|||++.+    ++++++.  .|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~----~~~~~~~--~~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLL----TDLATQL--APGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHH----HHHHHHH--SCSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHH----HHHHHHh--CChhcEEeCCcCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999953    4444444  389999999 99999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +|+++|++|++|+++|+|||| ++++|+||++++++ +           ++++.++++.++++++|++|++.||
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg  223 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHG-DSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKR  223 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSS-TTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC----------
T ss_pred             HHHHhCcCHHHceEEEecCCC-CceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999996 69999999999852 1           3556678999999999999999885

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.6e-38  Score=283.28  Aligned_cols=209  Identities=30%  Similarity=0.494  Sum_probs=176.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.+|++++..|+..|+.++|+|+|+++  +++...|+.+... ....+... + + .+++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~-d-~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-G-D-YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-C-C-GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-C-C-HHHhCCCCEEEEccC
Confidence            69999998 999999999999988888999999983  4555666665431 11122222 3 4 468999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  184 (256)
                      .++++|++|.|++.+|++++++++++|++++|++++|++|||++.+    +++.++.+++|++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~----~~~~~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVL----TYFFLKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH----HHHHHHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHH----HHHHHHHhCCChhhEEeeCccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999963    445433334999999999 68999999999


Q ss_pred             HHHHcCCCCCceeEEEEeCCCCCceeecccccccCCC-----------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       185 la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      +|+++|++|.+|+++|+|||| ++++||||++++++.           ++++.++++.++++++|++|++.||
T Consensus       153 la~~lgv~~~~v~~~v~G~hg-~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  224 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHG-DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKG  224 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhCcCHHHceEEEEeCCC-CCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCC
Confidence            999999999999999999996 699999999987421           3566678999999999999999985

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.8e-37  Score=277.99  Aligned_cols=210  Identities=20%  Similarity=0.304  Sum_probs=172.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +|||+|||+ |.+|++++..|+..|+..+|+|+|++.  +++...|+.|...  ...++...  +++ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            369999998 999999999999888555999999984  4566667765431  12234322  355 789999999999


Q ss_pred             cCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechH
Q 025206          104 AGVPRK----PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (256)
Q Consensus       104 ag~~~~----~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds  178 (256)
                      ++.+++    +|++|.|++.+|+++++++++.+.+++|+++++++|||++.    ++++.++.+++|++||+|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~----~~~~~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV----ITALFQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHH----HHHHHHHhcCCCHHHEeecCccchH
Confidence            999988    99999999999999999999999999999999999999995    4556655555999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      .|+++.+++.+++++.+++++++|||| ++++|+||++.+++ +      ++++.++++.++++++|++|++.||
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg  226 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHG-NSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKG  226 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTT-TTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCC-CcEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhccC
Confidence            999999999999999999999999996 59999999998742 2      4566789999999999999999985

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=3.7e-36  Score=270.40  Aligned_cols=217  Identities=34%  Similarity=0.533  Sum_probs=181.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +++||+|||+ |.+|++++..|+..|+. +|+|+|+++  +++..+|+.+..    ...++..   ++++ +++++||+|
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiV   76 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVV   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            4579999998 99999999999998874 699999984  455566776542    1223442   3465 789999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHH
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~  179 (256)
                      |+++|.|+++|++|.|++.+|.+++++++++|++++|+++++++|||++.++   +.+++.++ +|++||+|+ |.+|+.
T Consensus        77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~---~~~~~~~~-~~~~rviG~~t~ld~~  152 (317)
T 2ewd_A           77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMV---SHFQKVSG-LPHNKVCGMAGVLDSS  152 (317)
T ss_dssp             EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHH---HHHHHHHC-CCGGGEEESCHHHHHH
T ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHH---HHHHHhhC-CCHHHEEeccCcHHHH
Confidence            9999999999999999999999999999999999999999999999999633   23445454 999999999 589999


Q ss_pred             HHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHhhcCCCc
Q 025206          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  249 (256)
                      |+++.+++++|+++.+++++|+|+|| ++++|+||.+++++          .++.++++++.+.++.+++++++.. |++
T Consensus       153 r~~~~la~~lg~~~~~v~~~v~g~Hg-~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g  230 (317)
T 2ewd_A          153 RFRTFIAQHFGVNASDVSANVIGGHG-DGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTG  230 (317)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcChhhceEEEEecCC-CceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCC
Confidence            99999999999999999999999997 59999999997632          1467778899999999999999964 355


Q ss_pred             ceeccc
Q 025206          250 SATLSM  255 (256)
Q Consensus       250 s~~~s~  255 (256)
                      ++++|+
T Consensus       231 ~~~~~~  236 (317)
T 2ewd_A          231 TAYFAP  236 (317)
T ss_dssp             CCCHHH
T ss_pred             chHHHH
Confidence            667664

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=3.3e-34  Score=258.54  Aligned_cols=216  Identities=28%  Similarity=0.411  Sum_probs=178.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a   97 (256)
                      ++|||+|+||+|+||++++..|+.+|+.     .+|+++|++.    +.+..+|+.|...+. +.....+.+++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhCCC
Confidence            4689999999999999999999998865     3999999863    456678998754322 11122234667899999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeec
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~l  176 (256)
                      |+||++||.++.++++|.+++..|+.+++++++.+++++ |+++++++|||+|.++++   ..+..+++||.+++|.|.+
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~---~~~~~~~~~p~~~yg~tkl  158 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALI---AYKNAPGLNPRNFTAMTRL  158 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEECCHH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHH---HHHHcCCCChhheeccchH
Confidence            999999999998899999999999999999999999998 999999999999864443   2233324889999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecccccccCC-C----CCHHH-HHHHHHHHHhhHHHHHhhcCC
Q 025206          177 DVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED-IKALTKRTQDGGTEVVEAKAG  247 (256)
Q Consensus       177 ds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~s~~~~~~-~----~~~~~-~~~i~~~v~~~~~~i~~~k~~  247 (256)
                      |+.|+.+.+++++|+++..++ .+|+|+|| ++++|+|+++.+.+ +    +++++ ++++.++++++|++|++.||+
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~  235 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHS-STMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQARGA  235 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCC-CeEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHccCC
Confidence            999999999999999999999 57999997 58999999988742 2    24344 489999999999999999963

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.97  E-value=7.3e-31  Score=235.16  Aligned_cols=215  Identities=29%  Similarity=0.454  Sum_probs=175.5

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEE
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +..++|||+|||+ |.+|++++..|+..|++++|+|+|+++  +++.++|+.+... ....+... +++ .+++++||+|
T Consensus         3 ~~~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~aD~V   79 (319)
T 1lld_A            3 TTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDD-PEICRDADMV   79 (319)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESC-GGGGTTCSEE
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe-CCC-HHHhCCCCEE
Confidence            3445689999998 999999999999999888999999984  4455677665431 11222222 224 3689999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-eechHH
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~lds~  179 (256)
                      |++++.++++|++|.|++.+|+++++++++.|.+++|++++++++||++.    .+++.++.+++|++||+|. |.+|+.
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~----~~~~~~~~~~~~~~~vig~~~~l~~~  155 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDI----ATHVAQKLTGLPENQIFGSGTNLDSA  155 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH----HHHHHHHHHTCCTTSEEECTTHHHHH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHH----HHHHHHHhcCCCHHHEeeccccHhHH
Confidence            99999999999999999999999999999999999999999999999995    3444444334999999999 899999


Q ss_pred             HHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C------------CCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------------LADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~------------~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      |++..+++++++++.+++.+++|+|| ++++|+|+++.++. +            .+++.++++.+.+++.+++|++.||
T Consensus       156 r~~~~~a~~~~v~~~~v~~~~~G~~g-~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~G  234 (319)
T 1lld_A          156 RLRFLIAQQTGVNVKNVHAYIAGEHG-DSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKG  234 (319)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEBSSS-TTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhCCCHHHeEEEEEeCCC-CceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCCC
Confidence            99999999999999999999999996 58899999987641 0            2334478899999999999999885

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=99.97  E-value=4.6e-32  Score=254.23  Aligned_cols=178  Identities=17%  Similarity=0.218  Sum_probs=144.0

Q ss_pred             CceEEEEcCCCCc-HHHHHHHHHc--CCC-ccEEEEEeCCC--chhH-HHHHhc-----ccCCCcEEEEecCCccccccC
Q 025206           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIAN--TPGV-AADVGH-----INTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        28 ~~KI~IIGaaG~V-G~~la~~l~~--~~~-~~eV~LiD~~~--~~g~-~~dl~~-----~~~~~~v~~~~~t~d~~eal~   95 (256)
                      ++||+|||| |++ |..++..|+.  +++ .+||+|+|+++  .+.. ..|+.+     ...+.+++.   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            579999998 888 7777777776  666 78999999975  3211 223332     122334442   457778999


Q ss_pred             CCCEEEEecCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHH
Q 025206           96 DSDVVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~  155 (256)
                      |||+||+++|.++++|++|.+                    +..+|+++++++++.|+++||+||+|++|||+|    ++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----iv  158 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  158 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            999999999999888877764                    478999999999999999999999999999999    56


Q ss_pred             HHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-----------CCCCCceeecccccc
Q 025206          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQAT  217 (256)
Q Consensus       156 ~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~Hg~~~~vp~~s~~~  217 (256)
                      |+++++.+  |++||||+|+.. .|+++.+|+.+|++|++|+++++|           +|| ++++|.|+...
T Consensus       159 T~a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G-~d~~p~~~~~~  227 (450)
T 1s6y_A          159 TEAVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDG-VEVTEKVIDLV  227 (450)
T ss_dssp             HHHHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETT-EECHHHHHHHH
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCC-cCchHhHHHHH
Confidence            67776664  788999998765 499999999999999999999999           896 68999998753

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=99.97  E-value=3.5e-31  Score=246.06  Aligned_cols=176  Identities=16%  Similarity=0.153  Sum_probs=140.3

Q ss_pred             CceEEEEcCCCCcHHHH--HHHHHc--CCC-ccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPL--ALLMKL--NPL-VSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~l--a~~l~~--~~~-~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ++||+|||| |++ .+.  +..|+.  .++ .+||+|+|+++  +++ +.|+.+.......++. .++|++++++|||+|
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEE
Confidence            579999998 876 333  334555  676 88999999984  333 4556553211113332 256777899999999


Q ss_pred             EEecCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHH
Q 025206          101 IIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~  160 (256)
                      |+++|.+++++++|.+                    +..+|+++++++++.|+++| |||+|++|||+|    ++|++++
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVR  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHH
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHH
Confidence            9999999888777742                    35899999999999999999 999999999999    5677777


Q ss_pred             HhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-----------CCCCCceeeccccc
Q 025206          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQA  216 (256)
Q Consensus       161 ~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~Hg~~~~vp~~s~~  216 (256)
                      +.+  |++||||+|+.- .|+++.+|+.+|++|++|+++++|           +|| ++++|.||..
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG-~d~~p~~~~~  215 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKG-EDVTEKVFEN  215 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETT-EECHHHHHHH
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCC-cEehhhHHHH
Confidence            764  778999998653 499999999999999999999999           996 5899999986

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.97  E-value=6.7e-31  Score=247.43  Aligned_cols=178  Identities=19%  Similarity=0.263  Sum_probs=144.7

Q ss_pred             CCceEEEEcCCCCc-HHHHHHHHHcC--CC-ccEEEEEeCCC--chhHHHHHhcc-----cCCCcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIAN--TPGVAADVGHI-----NTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~V-G~~la~~l~~~--~~-~~eV~LiD~~~--~~g~~~dl~~~-----~~~~~v~~~~~t~d~~eal~   95 (256)
                      +++||+|||| |++ |..++..|+.+  ++ ..||+|+|+++  +++. .|+.+.     ..+.+++.   ++|++++++
T Consensus        27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~---t~D~~eal~  101 (472)
T 1u8x_X           27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAA---TTDPEEAFT  101 (472)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEE---ESCHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEE---ECCHHHHHc
Confidence            3469999998 988 55577777777  77 78999999984  3332 344432     22334443   457778999


Q ss_pred             CCCEEEEecCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHH
Q 025206           96 DSDVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r--------------------~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~  155 (256)
                      |||+||+++|.++.++++|                    .+++.+|+++++++++.|+++||+||+|++|||+|    ++
T Consensus       102 ~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----i~  177 (472)
T 1u8x_X          102 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IV  177 (472)
T ss_dssp             SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HH
T ss_pred             CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            9999999999988777777                    44489999999999999999999999999999999    56


Q ss_pred             HHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCC-CceeEEEEe-----------C-CCCCceeecccccc
Q 025206          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-----------G-HAGITILPLFSQAT  217 (256)
Q Consensus       156 ~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G-----------~-Hg~~~~vp~~s~~~  217 (256)
                      |+++++.+  |++||||+|+.. .|+++.+|+.+|++| ++|+++|+|           + || ++++|.||...
T Consensus       178 T~~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG-~d~~p~~~~~~  248 (472)
T 1u8x_X          178 AEATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEG-NDLMPKLKEHV  248 (472)
T ss_dssp             HHHHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTC-CBCHHHHHHHH
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCC-CEehHhHHHHH
Confidence            67776664  888999998665 499999999999998 999999999           8 96 58999998754

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.95  E-value=5.6e-28  Score=227.57  Aligned_cols=187  Identities=20%  Similarity=0.198  Sum_probs=139.5

Q ss_pred             CCceEEEEcCCCCcHHHH--HHHHHc-CCC-ccEEEEEeCCC--chhHHHHHhc-----ccCCCcEEEEecCCccccccC
Q 025206           27 PDRKVAVLGAAGGIGQPL--ALLMKL-NPL-VSRLALYDIAN--TPGVAADVGH-----INTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~l--a~~l~~-~~~-~~eV~LiD~~~--~~g~~~dl~~-----~~~~~~v~~~~~t~d~~eal~   95 (256)
                      +++||+|||| |+||++.  +..|+. .++ ..||+|+|+++  +++ ..++.+     ...+.+++.   ++|++++++
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~   76 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVII   76 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhC
Confidence            4579999998 9986554  567764 333 45999999984  333 222222     122334443   567778999


Q ss_pred             CCCEEEEecCC------------CCCCCCCH--HH------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           96 DSDVVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        96 ~aDvVIi~ag~------------~~~~g~~r--~d------------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      |||+||+++|.            |.++|..+  .|            ++.+|+++++++++.|+++||+||+|++|||+|
T Consensus        77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd  156 (480)
T 1obb_A           77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF  156 (480)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH
T ss_pred             CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence            99999999986            34444433  22            478999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccCCCCCHHHHH
Q 025206          150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKANLADEDIK  228 (256)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~  228 (256)
                          ++|+++++   +|++||||+|+++. ++++.+ +.+|++|++|+++|+| ||     +.||..++..+   .+-++
T Consensus       157 ----i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH-----~~w~~~~~~~G---~D~~p  219 (480)
T 1obb_A          157 ----EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNH-----GIWLNRFRYNG---GNAYP  219 (480)
T ss_dssp             ----HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETT-----EEEEEEEEETT---EECHH
T ss_pred             ----HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecc-----hhhhhheeeCC---eEcHH
Confidence                56667665   68999999986554 478999 9999999999999999 99     88998887632   23345


Q ss_pred             HHHHHHH
Q 025206          229 ALTKRTQ  235 (256)
Q Consensus       229 ~i~~~v~  235 (256)
                      +|.+.+.
T Consensus       220 ~l~~~~~  226 (480)
T 1obb_A          220 LLDKWIE  226 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.94  E-value=6.5e-26  Score=212.03  Aligned_cols=177  Identities=22%  Similarity=0.336  Sum_probs=138.2

Q ss_pred             CCCceEEEEcCCCCcH--HHHHHHHHcCC-CccEEEEEeCCC--ch--hHHHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206           26 VPDRKVAVLGAAGGIG--QPLALLMKLNP-LVSRLALYDIAN--TP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG--~~la~~l~~~~-~~~eV~LiD~~~--~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      |+++||+|||| |++|  ..++..|+... +.++|+|+|+++  ++  +...+....   ...++. .|+|+++|++|||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~~~~I~-~TtD~~eAl~dAD   77 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---GRWRYE-AVSTLKKALSAAD   77 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---SCEEEE-EESSHHHHHTTCS
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---cCCeEE-EECCHHHHhcCCC
Confidence            45689999998 9986  46776666533 345999999984  21  112221111   223433 3678889999999


Q ss_pred             EEEEecC------------CCCCCCCCHH--H--------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH
Q 025206           99 VVIIPAG------------VPRKPGMTRD--D--------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (256)
Q Consensus        99 vVIi~ag------------~~~~~g~~r~--d--------~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~  156 (256)
                      +||++++            .|+++|..+.  |        ...+|+++++++++.|+++||+||+|++|||+|    ++|
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t  153 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCT  153 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHH
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHH
Confidence            9999985            4778887554  3        345999999999999999999999999999999    556


Q ss_pred             HHHHHhCCCCCCcEEEEeechHHHHHHHHHHHc----C---CCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA----N---VNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       157 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l----~---v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      +++++.  +|+.||||+|+.. .++++.+|+.+    |   +++++|+..++| ||     +.||+.++..
T Consensus       154 ~~~~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~~~  216 (450)
T 3fef_A          154 RVLYKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKASYR  216 (450)
T ss_dssp             HHHHHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEEET
T ss_pred             HHHHHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEEEC
Confidence            666655  7899999999876 68999999999    5   779999999999 99     8999998874

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.93  E-value=7.1e-26  Score=213.71  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=128.5

Q ss_pred             ceEEEEcCCCCcHHHH--HHHHHcCC----CccEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQPL--ALLMKLNP----LVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~l--a~~l~~~~----~~~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      |||+|||| |++|++.  ...++...    ..+||+|+|+++  +++...++.+..  ....+++. .++|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            69999998 9999864  23344332    246999999993  555556665532  12223333 2678889999999


Q ss_pred             EEEEecCCC-------------------CCCCCCHHHHH---------------HHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025206           99 VVIIPAGVP-------------------RKPGMTRDDLF---------------NINAGIVKDLCSAIAKYCPNAIVNMI  144 (256)
Q Consensus        99 vVIi~ag~~-------------------~~~g~~r~d~~---------------~~N~~i~~~i~~~i~~~~p~~~iiv~  144 (256)
                      |||+++|..                   +++|.+|.++.               .+|++++.++++.|+++|||||+|++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            999999753                   35555544432               35899999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccC
Q 025206          145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (256)
Q Consensus       145 tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~  219 (256)
                      |||++.    +|+++++.   +..|++|+|+-..  ....+++.||+++++|+..+.| ||     +.|+..++..
T Consensus       159 tNP~~i----~t~a~~~~---~~~k~vGlC~~~~--~~~~~~~~Lg~~~~~v~~~~~GlNH-----~~w~~~~~~~  220 (477)
T 3u95_A          159 ANPVFE----ITQAVRRW---TGANIIGFCHGVA--GVYEVFERLGLDPEEVDWQVAGVNH-----GIWLNRFRYR  220 (477)
T ss_dssp             SSCHHH----HHHHHHHH---HCCCEEEECCGGG--HHHHHHHHTTCCGGGEEEEEEEETT-----EEEEEEEEET
T ss_pred             cChHHH----HHHHHHHh---CCCCeEEECCCHH--HHHHHHHHhCCCHHHcEEEEeecCC-----Ceeeeeeeec
Confidence            999994    55665553   3469999996443  3355778899999999999999 77     6777776653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.14  E-value=3.7e-11  Score=107.63  Aligned_cols=138  Identities=16%  Similarity=0.206  Sum_probs=97.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hh---H---HHHHhccc-C----C-----CcEEEEecCCc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG---V---AADVGHIN-T----R-----SEVAGYMGNDQ   89 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g---~---~~dl~~~~-~----~-----~~v~~~~~t~d   89 (256)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|++.  + .+   .   ...+.+.. .    .     .+++.   +++
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CTN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---ECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---ccc
Confidence            58999998 9999999999999999  999999983  1 11   1   11111111 0    0     12332   457


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      +.+++++||+||.++              .+|+++.+++.+++++++ |++++  +||.+.+.   ++++....  -.|+
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~---is~ia~~~--~~p~  139 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLL---PSKLFTGL--AHVK  139 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCC---HHHHHTTC--TTGG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhcc---chhhhhhc--cCCC
Confidence            788999999999984              346889999999999999 56665  99999873   45665544  4578


Q ss_pred             cEEEE-------------------eechHHHHHHHHHHHcCCCC
Q 025206          169 KLFGV-------------------TTLDVVRAKTFYAGKANVNV  193 (256)
Q Consensus       169 kviG~-------------------t~lds~R~~~~la~~l~v~~  193 (256)
                      |++|+                   |.-++...-..+++.+|..|
T Consensus       140 r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p  183 (319)
T 3ado_A          140 QCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP  183 (319)
T ss_dssp             GEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             cEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence            99998                   22334444456677777544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.03  E-value=1.6e-09  Score=106.89  Aligned_cols=139  Identities=13%  Similarity=0.211  Sum_probs=96.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--c---hhHH-HHHh---------cc-cCCCcEEEEecCCcc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T---PGVA-ADVG---------HI-NTRSEVAGYMGNDQL   90 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~---~g~~-~dl~---------~~-~~~~~v~~~~~t~d~   90 (256)
                      +-.||+|||| |.+|+.+|..++..|+  +|+|+|++.  +   .... ..+.         .. ....+++.   +++ 
T Consensus       315 ~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~-  387 (742)
T 3zwc_A          315 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS-  387 (742)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESC-
T ss_pred             cccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCc-
Confidence            3469999998 9999999999999999  999999983  1   1100 0010         00 01123332   334 


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k  169 (256)
                      .+++++||+||.++              .+|+++.+++.+++++++ |++++  +||.+.+.   ++++....  -.|+|
T Consensus       388 ~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~---i~~ia~~~--~~p~r  446 (742)
T 3zwc_A          388 TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIASST--DRPQL  446 (742)
T ss_dssp             GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHTTS--SCGGG
T ss_pred             HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCC---hHHHHhhc--CCccc
Confidence            36799999999984              346889999999999999 56665  99998873   45665543  45789


Q ss_pred             EEEE-------------------eechHHHHHHHHHHHcCCCC
Q 025206          170 LFGV-------------------TTLDVVRAKTFYAGKANVNV  193 (256)
Q Consensus       170 viG~-------------------t~lds~R~~~~la~~l~v~~  193 (256)
                      ++|+                   |.-++...-..+++.+|..|
T Consensus       447 ~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p  489 (742)
T 3zwc_A          447 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG  489 (742)
T ss_dssp             EEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred             cccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence            9998                   22234344455678888654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.77  E-value=1.1e-07  Score=83.33  Aligned_cols=121  Identities=19%  Similarity=0.341  Sum_probs=77.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhc--------c-cC--------CCcEEEEec
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH--------I-NT--------RSEVAGYMG   86 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~--------~-~~--------~~~v~~~~~   86 (256)
                      ++.+||+|||+ |.+|+.+|..++..|+  +|+++|++.  +......+.+        . ..        ..++..   
T Consensus         2 m~~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---   75 (283)
T 4e12_A            2 TGITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---   75 (283)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---
Confidence            34579999998 9999999999999998  999999983  1111111100        0 00        012232   


Q ss_pred             CCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCC
Q 025206           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (256)
Q Consensus        87 t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~  165 (256)
                      ++++.+++++||+||++...              +.+..+++.+++.+++ |++++  +||.+...   .+++.+...  
T Consensus        76 ~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~---~~~la~~~~--  134 (283)
T 4e12_A           76 SDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIF--ATNSSTLL---PSDLVGYTG--  134 (283)
T ss_dssp             ESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHHHHS--
T ss_pred             eCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--
Confidence            34667789999999999632              2455667777888877 56655  55554432   234444443  


Q ss_pred             CCCcEEEE
Q 025206          166 NEKKLFGV  173 (256)
Q Consensus       166 ~~~kviG~  173 (256)
                      .+.+++|+
T Consensus       135 ~~~~~ig~  142 (283)
T 4e12_A          135 RGDKFLAL  142 (283)
T ss_dssp             CGGGEEEE
T ss_pred             CCcceEEE
Confidence            35677776

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.76  E-value=4.1e-08  Score=91.94  Aligned_cols=119  Identities=15%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH-----H-HHhccc-C--------CCcEEEEecCCccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----A-DVGHIN-T--------RSEVAGYMGNDQLG   91 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~-----~-dl~~~~-~--------~~~v~~~~~t~d~~   91 (256)
                      +.+||+|||+ |.+|..+|..++..|+  +|+++|+++.++..     + .+.... .        ..+++.   ++++ 
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-  125 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-
Confidence            4479999998 9999999999999999  99999998432110     1 111111 0        123443   3465 


Q ss_pred             cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      +++++||+||.+..              ++..+.+++.+++.+++ |++++  +||.+..-   ++++....  -.+.++
T Consensus       126 ~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~---i~~ia~~~--~~p~r~  184 (460)
T 3k6j_A          126 HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSLD---LNEISSVL--RDPSNL  184 (460)
T ss_dssp             GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHHTTS--SSGGGE
T ss_pred             HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCChh---HHHHHHhc--cCCcce
Confidence            47999999999953              23566778888898888 56665  67766542   24454433  235688


Q ss_pred             EEE
Q 025206          171 FGV  173 (256)
Q Consensus       171 iG~  173 (256)
                      +|+
T Consensus       185 iG~  187 (460)
T 3k6j_A          185 VGI  187 (460)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.71  E-value=2.7e-07  Score=86.52  Aligned_cols=120  Identities=14%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHH--------hcc-----cC-CCcEEEEecCCc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADV--------GHI-----NT-RSEVAGYMGNDQ   89 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl--------~~~-----~~-~~~v~~~~~t~d   89 (256)
                      +..+||+|||+ |.+|..+|..|+..|+  +|+++|++.  +......+        ...     .. ....+.   +++
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~  108 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS  108 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCC
Confidence            34579999998 9999999999999998  999999983  11100000        010     00 111232   335


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      + +++++||+||++..              ++..+.+++.+++..++ |++++  +||++..-   ++++....  -.+.
T Consensus       109 ~-~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~---~~~la~~~--~~~~  166 (463)
T 1zcj_A          109 T-KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIASST--DRPQ  166 (463)
T ss_dssp             G-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHTTS--SCGG
T ss_pred             H-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcC---HHHHHHHh--cCCc
Confidence            5 67899999999963              13455677778888887 56655  46777652   23444322  2356


Q ss_pred             cEEEE
Q 025206          169 KLFGV  173 (256)
Q Consensus       169 kviG~  173 (256)
                      +++|+
T Consensus       167 ~~ig~  171 (463)
T 1zcj_A          167 LVIGT  171 (463)
T ss_dssp             GEEEE
T ss_pred             ceEEe
Confidence            78886

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.70  E-value=5.2e-08  Score=85.24  Aligned_cols=165  Identities=17%  Similarity=0.091  Sum_probs=96.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec---CCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~eal~~aDvVIi~ag  105 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+++|.+.....  +..+.    .++...+   +.++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNP----SAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCT----TSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCC----CceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999999998  9999987631100  01111    1111111   1124556677 99999998


Q ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHH
Q 025206          106 VPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (256)
Q Consensus       106 ~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~  183 (256)
                      .+..  ...+....+..|+.....+++.+.+.+.. .+|++|.. .+...--.....+....++...+|.+.....++-.
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~-~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSS-TVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCA  149 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEG-GGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcH-HHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence            6432  12345667788999999999999888754 44444421 00000000000000002222333333334445556


Q ss_pred             HHHHHcCCCCCcee-EEEEeCC
Q 025206          184 FYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       184 ~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      .+++..|++..-++ +.++|..
T Consensus       150 ~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          150 TYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHhCCCEEEEeeccccCcC
Confidence            66777788777777 5788865

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.70  E-value=9.1e-09  Score=91.54  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=95.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      ++++|.|+||+|++|++++..|+.+|+  +|+++|.+...      .      .+..+.+    ..++.++++++|+||+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~------~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------T------GGEEVVGSLEDGQALSDAIMGVSAVLH   83 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------S------CCSEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------C------CccEEecCcCCHHHHHHHHhCCCEEEE
Confidence            457999999999999999999999998  99999986422      0      0111110    1234567889999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--------CCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--------PVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--------Pvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      +|+..........+.+..|+.....+++.+.+.... .+|++|.        |...   .    ..+....++...+|.+
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~---~----~~E~~~~~~~~~Y~~s  155 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFL---P----VTEDHPLCPNSPYGLT  155 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSS---S----BCTTSCCCCCSHHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCC---C----cCCCCCCCCCChHHHH
Confidence            998654333334677888999999999999887654 4454543        1100   0    0000002222333334


Q ss_pred             echHHHHHHHHHHHcCCCCCcee-EEEE
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVN-VPVV  201 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~  201 (256)
                      .....++-..+++..+++..-++ ..++
T Consensus       156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          156 KLLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence            34444555556667777777777 5677

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.69  E-value=3e-07  Score=77.46  Aligned_cols=111  Identities=17%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcE-EEEecC--CccccccCCCCEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGYMGN--DQLGQALEDSDVVI  101 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v-~~~~~t--~d~~eal~~aDvVI  101 (256)
                      ..+.|||.|+||+|++|+.++..|+.+|+  +|++++++.....  .+.+..    + +.+.++  .++.+++.++|+||
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~----~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG----ASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT----CSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC----CceEEEcccHHHHHHHHcCCCEEE
Confidence            34568999999999999999999999998  9999998743211  122111    1 111111  35667899999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++||....  .+....+..|+.....+++.+.+.... .+|++|.
T Consensus        90 ~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           90 FAAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             ECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             ECCCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            99986532  345667788999899999999887644 5555553

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.68  E-value=9e-08  Score=85.19  Aligned_cols=174  Identities=14%  Similarity=0.022  Sum_probs=101.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC---CCcEEEEecC----CccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGN----DQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~---~~~v~~~~~t----~d~~eal~~a   97 (256)
                      +++||.|+||+|++|++++..|+.+|+  +|+.+|...  ......++.....   ...++...++    .++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            467999999999999999999999998  999999863  2222222322100   0123333221    2355678899


Q ss_pred             CEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus        98 DvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      |+||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|.+|.. .+...--...+.+.....+....|.+.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~-~vyg~~~~~~~~E~~~~~p~~~Y~~sK  179 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASS-STYGDHPALPKVEENIGNPLSPYAVTK  179 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEG-GGGTTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecH-HhcCCCCCCCCccCCCCCCCChhHHHH
Confidence            9999999854211  1234566788999999999999888754 44444421 100000000000000011122223333


Q ss_pred             chHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +...++-..+++..|++..-++ +.|+|..
T Consensus       180 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  209 (351)
T 3ruf_A          180 YVNEIYAQVYARTYGFKTIGLRYFNVFGRR  209 (351)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECSEESTT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeCceeCcC
Confidence            3444555556667788877777 5688865

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.67  E-value=4e-08  Score=86.21  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=94.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC---CccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t---~d~~eal~~aDvVIi~ag  105 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+.++.+.....   +..      ++...++   .++.++++++|+||++|+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~------~~~~~~Dl~~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---IND------YEYRVSDYTLEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------C------CEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCc------eEEEEccccHHHHHHhhcCCCEEEEccc
Confidence            6899999999999999999999998  9999998732111   221      1111111   235567899999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  185 (256)
                      .....  +..+.+..|+.....+++.+.+.+.. .+|.+|. ..+...--...+.+.....+...+|.+.....++-..+
T Consensus        72 ~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS-~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  147 (311)
T 3m2p_A           72 TRGSQ--GKISEFHDNEILTQNLYDACYENNIS-NIVYAST-ISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIY  147 (311)
T ss_dssp             CCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEE-GGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcc-HHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence            65432  34456778999999999999887755 3444442 11000000000000000112222233333344455555


Q ss_pred             HHHcCCCCCcee-EEEEeCC
Q 025206          186 AGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       186 a~~l~v~~~~v~-~~v~G~H  204 (256)
                      ++..|++..-++ ..++|..
T Consensus       148 ~~~~g~~~~ilRp~~v~G~~  167 (311)
T 3m2p_A          148 SRKKGLCIKNLRFAHLYGFN  167 (311)
T ss_dssp             HHHSCCEEEEEEECEEECSC
T ss_pred             HHHcCCCEEEEeeCceeCcC
Confidence            566677666666 5677754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.66  E-value=3.2e-08  Score=87.93  Aligned_cols=176  Identities=14%  Similarity=0.096  Sum_probs=96.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCC--CCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aDvV  100 (256)
                      ++|||.|+||+|++|++++..|+..|.--+|+.+|..........+........+..+.++    .++.+++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            5679999999999999999999998843388888876321111122221111234433322    124455666  9999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHH-HHHHHHHhCCCCCCcEEEEeech
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI-AAEVFKKAGTYNEKKLFGVTTLD  177 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i-~~~~~~~~~~~~~~kviG~t~ld  177 (256)
                      |++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|.. .+.... -...+.+.....+...+|.+...
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~-~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~  180 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTD-EVYGSLGKTGRFTEETPLAPNSPYSSSKAS  180 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEG-GGGCCCCSSCCBCTTSCCCCCSHHHHHHHH
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCch-HHhCCCCcCCCcCCCCCCCCCChhHHHHHH
Confidence            9999865322  1334567788999999999999887654 34545421 000000 00000000001122233333333


Q ss_pred             HHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          178 VVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ..++-..+++..|++..-++ +.|+|..
T Consensus       181 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~  208 (346)
T 4egb_A          181 ADMIALAYYKTYQLPVIVTRCSNNYGPY  208 (346)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence            44555556666788777777 5688864

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.63  E-value=7.2e-08  Score=85.29  Aligned_cols=110  Identities=20%  Similarity=0.163  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      .+|||.|+||+|++|++++..|+.+|+  +|+++|.+....  .++.+.    .++.+.++    .++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            457999999999999999999999998  999999873211  112211    12222211    235567899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+.......+..+.+..|+.....+++.+.+.+.. .+|++|
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  125 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVG  125 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEEC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEC
Confidence            998643222344567788999999999999887643 345554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.62  E-value=7.3e-07  Score=78.55  Aligned_cols=116  Identities=11%  Similarity=-0.013  Sum_probs=77.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEE-ec----CCccccccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY-MG----NDQLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~-~~----t~d~~eal~~aDv   99 (256)
                      +.++|.|+||+|++|++++..|+.+|+  +|+++|.+....  ....+.+. ....++.+ .+    ..++.++++++|+
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAK-YPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHH-STTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhcc-CCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            457999999999999999999999998  999999863211  11111110 00123322 11    2245567789999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ||++|+.... +.+..+.+..|+.....+++.+.+......+|++|.
T Consensus        87 vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           87 VAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9999986532 245667788999999999998875332345666653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.61  E-value=3.7e-07  Score=80.44  Aligned_cols=120  Identities=17%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHH-------Hhccc-CC-------------CcEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD-------VGHIN-TR-------------SEVAG   83 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~d-------l~~~~-~~-------------~~v~~   83 (256)
                      +++||+|||+ |.+|..+|..|+..|+  +|+++|+++.  ......       +.... ..             .+++.
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3468999998 9999999999999998  9999999831  110000       00000 00             12332


Q ss_pred             EecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHh
Q 025206           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA  162 (256)
Q Consensus        84 ~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~  162 (256)
                         ++++.+++++||+||++...              +..+.+++.+.+.++. |++++  +||....-   .+++.+..
T Consensus        91 ---~~~~~~~~~~aD~Vi~avp~--------------~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i~---~~~l~~~~  148 (302)
T 1f0y_A           91 ---STDAASVVHSTDLVVEAIVE--------------NLKVKNELFKRLDKFAAEHTIF--ASNTSSLQ---ITSIANAT  148 (302)
T ss_dssp             ---ESCHHHHTTSCSEEEECCCS--------------CHHHHHHHHHHHTTTSCTTCEE--EECCSSSC---HHHHHTTS
T ss_pred             ---ecCHHHhhcCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEE--EECCCCCC---HHHHHHhc
Confidence               34666689999999999621              2344566777787777 46655  45554431   23443322


Q ss_pred             CCCCCCcEEEE
Q 025206          163 GTYNEKKLFGV  173 (256)
Q Consensus       163 ~~~~~~kviG~  173 (256)
                        -.+.+++|+
T Consensus       149 --~~~~~~~g~  157 (302)
T 1f0y_A          149 --TRQDRFAGL  157 (302)
T ss_dssp             --SCGGGEEEE
T ss_pred             --CCcccEEEE
Confidence              124567666

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=2.9e-08  Score=83.02  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      ++|||.|+||+|++|+.++..|+.+|+  +|++++++....     .+.  ...++.+.+    ..++.++++++|+||+
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-----~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKI-----KIE--NEHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGC-----CCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccc-----hhc--cCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            357999999999999999999999997  999999873211     000  012332221    1235567899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||....    ..+.+..|+...+.+++.+.+.... .+|.+|
T Consensus        74 ~a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           74 AFNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             eCcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            9976422    1224566888899999999887654 455555

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.60  E-value=7.8e-08  Score=84.34  Aligned_cols=166  Identities=14%  Similarity=0.086  Sum_probs=93.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec---CCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~eal~~aDvVIi~a  104 (256)
                      |++|.|+||+|++|++++..|+..|.  .+++.+.......   ...    ..+....+   ..++.++++++|+||++|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~---~~~----~~~~~~~~Dl~~~~~~~~~~~~d~vih~a   71 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEE---FVN----EAARLVKADLAADDIKDYLKGAEEVWHIA   71 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGG---GSC----TTEEEECCCTTTSCCHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChh---hcC----CCcEEEECcCChHHHHHHhcCCCEEEECC
Confidence            45899999999999999999999883  4444333221100   001    01221111   134566788999999999


Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          105 GVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       105 g~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      +.+..  ...+..+.+..|+.....+++.+.+.+.. .+|++|.- .+...--.....+....++...+|.+.....++-
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~-~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           72 ANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTS-TVYGEAKVIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCG-GGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCch-HHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            86532  22446677888999999999999887644 45555531 1000000000000000122222333333444555


Q ss_pred             HHHHHHcCCCCCcee-EEEEeCC
Q 025206          183 TFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       183 ~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ..+++..|++..-++ ..|+|..
T Consensus       150 ~~~~~~~g~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          150 ESYCHTFDMQAWIYRFANVIGRR  172 (313)
T ss_dssp             HHHHHHTTCEEEEEECSCEESTT
T ss_pred             HHHHHhcCCCEEEEeeccccCcC
Confidence            666777787766666 5678864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.60  E-value=1.6e-07  Score=86.54  Aligned_cols=108  Identities=18%  Similarity=0.259  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC--------------CCcEEEEecCCcccccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~--------------~~~v~~~~~t~d~~eal   94 (256)
                      |||+|||+ |.||..++..|+. |+  +|+++|+++.+  ...+.....              ..+++.   ++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            68999998 9999999999998 87  99999997321  112221111              112332   34556788


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCC
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNS  150 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv-~tNPvd~  150 (256)
                      ++||+||++.+.+...+..+.|     +..+.++++.+.+..|+.+|+. .|||.+.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            9999999998776422222333     2334555555555457777766 6899984

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.59  E-value=1.3e-07  Score=89.17  Aligned_cols=115  Identities=19%  Similarity=0.290  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccC---------------CCcEEEEecCCc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINT---------------RSEVAGYMGNDQ   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~---------------~~~v~~~~~t~d   89 (256)
                      ++|||+|||+ |+||.++|..|+..  |+  +|+++|+++.+  +..+.....               ...++.   +++
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~--~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~   79 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHI--TVTVVDMNTAK--IAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSD   79 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECC
Confidence            3579999998 99999999999987  56  99999997321  112221100               112332   446


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEe-cCCCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNS  150 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~-tNPvd~  150 (256)
                      +.+++++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+|+.. |+|++.
T Consensus        80 ~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt  141 (481)
T 2o3j_A           80 IPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKA  141 (481)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCH
Confidence            667889999999999888654322111 01123456667777777764 5555443 678775

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.58  E-value=2.2e-07  Score=86.53  Aligned_cols=123  Identities=17%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             cccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc----------------ccCCCcE
Q 025206           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH----------------INTRSEV   81 (256)
Q Consensus        18 ~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~----------------~~~~~~v   81 (256)
                      .++.+++..++.+|+|||. |+||.++|..|+..|+  +|+.+|+++.+  +..|+.                .....++
T Consensus        11 ~~~~~p~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~k--V~~ln~G~~pi~Epgl~ell~~~~~~g~l   85 (444)
T 3vtf_A           11 SSGLVPRGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSI--VERLRAGRPHIYEPGLEEALGRALSSGRL   85 (444)
T ss_dssp             --CCCCTTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred             cCCcCCCCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHCCCCCCCCCCHHHHHHHHHHcCCe
Confidence            3456666667779999998 9999999999999999  99999998311  111111                1112245


Q ss_pred             EEEecCCccccccCCCCEEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCCc
Q 025206           82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNST  151 (256)
Q Consensus        82 ~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~~  151 (256)
                      +.   +++..+++++||++|++.++|..+... .+..+   ....+.+++.++..++..+||+= |=|+...
T Consensus        86 ~~---tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtt  151 (444)
T 3vtf_A           86 SF---AESAEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTT  151 (444)
T ss_dssp             EE---CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTT
T ss_pred             eE---EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchH
Confidence            53   557778899999999999998765432 22222   24456677777665555555443 4577654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.56  E-value=2.3e-07  Score=86.74  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc--C--------------CCcEEEEecCCcccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQLGQ   92 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~~e   92 (256)
                      |||+|||+ |++|.++|..|+..|+  +|+++|+++.+  +..+....  .              ...++.   ++++.+
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNK--IEQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHH--HHHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999998 9999999999999998  99999998421  11121110  0              123443   457777


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCC
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVN  149 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd  149 (256)
                      ++++||+||++.+.|..++..      .++..+.++++.|.++. ++.+|+..| -|.+
T Consensus        75 a~~~aDvViiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg  127 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDGS------ADMSYVLDAARSIGRAMSRYILIVTKSTVPVG  127 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             HHhcCCEEEEEcCCCcccCCC------cChHHHHHHHHHHHhhCCCCCEEEEeeeCCCc
Confidence            899999999999887654321      23455667777777776 455555444 3544

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.56  E-value=1.4e-07  Score=83.56  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=96.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccccC--CCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~--~aD   98 (256)
                      .+|+|.|+||+|++|++++..|+.+|+  +|+++|.+.  ......++.... ...+..+.+    ..++.++++  ++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            457999999999999999999999998  999999863  222222222110 011222211    113344555  899


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeec
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~l  176 (256)
                      +||++||.....  .....+.+..|+.....+++.+.+.... .+|++|. ......--.....+....++...+|.+..
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS-~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~  158 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSS-ATVYGVPERSPIDETFPLSATNPYGQTKL  158 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEE-GGGBCSCSSSSBCTTSCCBCSSHHHHHHH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEec-ceEecCCCCCCCCCCCCCCCCChhHHHHH
Confidence            999999864211  1234466788999999999999887654 4455542 11000000000000000112223333433


Q ss_pred             hHHHHHHHHHHHcC-CCCCcee-EEEEeCC
Q 025206          177 DVVRAKTFYAGKAN-VNVAEVN-VPVVGGH  204 (256)
Q Consensus       177 ds~R~~~~la~~l~-v~~~~v~-~~v~G~H  204 (256)
                      ...++-..+++..+ ++..-++ ..|+|.+
T Consensus       159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          159 MAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            34455555666665 5555556 4688865

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.55  E-value=1.5e-07  Score=83.04  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=96.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      +.|||.|+||+|++|++++..|+.+|...+|+.+|.....+....+.+......+..+.++    .++.+++.++|+||+
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            3478999999999999999999987621289999875211000111111101233333221    123455678999999


Q ss_pred             ecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHH
Q 025206          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR  180 (256)
Q Consensus       103 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R  180 (256)
                      +||.....  ..+..+.+..|+.....+++.+.+......+|++|... +....-...+.+....++...+|.+.....+
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~-vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  160 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDE-VYGDILKGSFTENDRLMPSSPYSATKAASDM  160 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGG-GGCCCSSSCBCTTBCCCCCSHHHHHHHHHHH
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHH-HHCCCCCCCcCCCCCCCCCCccHHHHHHHHH
Confidence            99864311  12335577889999999999999886445666665210 0000000000000001222223333333344


Q ss_pred             HHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          181 AKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       181 ~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +-..+++.+|++..-++ +.|+|..
T Consensus       161 ~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          161 LVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            54555666676665566 5577754

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.55  E-value=2.1e-07  Score=86.44  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc--------------CCCcEEEEecCCccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLG   91 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~--------------~~~~v~~~~~t~d~~   91 (256)
                      .++|||+|||+ |++|.++|..|++ |+  +|+++|+++.+  +..+....              ....++.   ++|+.
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~--v~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~~  104 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAK--VDMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDKH  104 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHH--hhHHhccCCccccccHHHHHhhccCCeEE---EcCHH
Confidence            35689999998 9999999999987 87  99999998321  11121110              0112432   45777


Q ss_pred             cccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCC
Q 025206           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~  150 (256)
                      +++++||+||++...+..+.....|     +..+++.++.|.+..|+.++|.- |.|.+.
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~~D-----l~~V~~v~~~i~~l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNYFN-----TSTVEAVIRDVTEINPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTEEE-----CHHHHHHHHHHHHHCTTSEEEECSCCCTTH
T ss_pred             HHHhCCCEEEEeCCCcccccccccc-----HHHHHHHHHHHHhcCCCcEEEEeCCCChHH
Confidence            8999999999997655322211122     23344555555555577766654 456663

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.55  E-value=3.1e-07  Score=85.29  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCcccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~e   92 (256)
                      |||+|||+ |+||..++..|+..|+  +|+++|+++.+  ...+.....                ..+++.   ++++.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            68999998 9999999999999998  99999997321  111221100                112432   446667


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C---CcEEEEe-cCCCCC
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P---NAIVNMI-SNPVNS  150 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p---~~~iiv~-tNPvd~  150 (256)
                      ++++||+||++.+.|..... ..|     +..++++++.|.++. +   +.+|+.. |+|.+.
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~~d-----l~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-DLD-----LGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-SBC-----CHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HhccCCEEEEEcCCCcccCC-Ccc-----hHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            88999999999987754322 112     233445555555543 4   6666655 678774

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.55  E-value=8.3e-07  Score=78.81  Aligned_cols=126  Identities=12%  Similarity=0.034  Sum_probs=75.2

Q ss_pred             ccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccc
Q 025206           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~e   92 (256)
                      .+|-+-.+.++.. +++||.|+||+|++|++++..|+..|+  +|+++|.+..... ..+.+......+....++ -...
T Consensus        13 ~~~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D-~~~~   87 (343)
T 2b69_A           13 GRENLYFQGHMEK-DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK-RNVEHWIGHENFELINHD-VVEP   87 (343)
T ss_dssp             ---------------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGTGGGTTCTTEEEEECC-TTSC
T ss_pred             ccccccccccccc-CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccch-hhhhhhccCCceEEEeCc-cCCh
Confidence            4455555555443 567999999999999999999999998  9999997621100 011111111234443322 1124


Q ss_pred             ccCCCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           93 ALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++.++|+||++|+.....  ..+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        88 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           88 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             hhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            678999999999864311  123456678899999999999988764  555555

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.54  E-value=5.3e-07  Score=79.73  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=71.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h--hHHHHHhcccCCCcEEEEec----CCccccccCCCCE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P--GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~--g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDv   99 (256)
                      ++||.|+||+|++|++++..|+.+|+  +|+.++.+..  .  ....++...   ..++.+.+    ..++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            36899999999999999999999998  8888766521  1  111223211   12332221    2345567889999


Q ss_pred             EEEecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          100 VIIPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       100 VIi~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ||++|+.......+. .+.+..|+.....+++.+.+...-..+|++|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            999997542111122 2367789999999999988764223566665

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.54  E-value=1.3e-07  Score=84.84  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHc--CCCccEEEEEeCCCchh--HHHHH---hcc--cCCCcEEEEecC----Ccccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPG--VAADV---GHI--NTRSEVAGYMGN----DQLGQ   92 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~--~~~~~eV~LiD~~~~~g--~~~dl---~~~--~~~~~v~~~~~t----~d~~e   92 (256)
                      +++++|.|+||+|++|++++..|+.  .|.  +|+++|......  .....   .+.  .....+..+.++    .++.+
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR   85 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence            4568999999999999999999999  888  999999753200  00000   000  001122222211    12334


Q ss_pred             c-cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           93 A-LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        93 a-l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      + ..++|+||++||.......+..+.+..|+.....+++.+.+.+..  +|++|
T Consensus        86 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             hhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            4 689999999998654333556778889999999999999887654  44454

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.54  E-value=1e-07  Score=82.16  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      ++++|.|+||+|++|+.++..|+.+|.  +|++.|++.....         ...+..+.+    ..++.++++++|+||+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~   70 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVH   70 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            345799999999999999999999987  9999998742111         011222211    1234567889999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||...  .....+.+..|+.....+++.+.+.... .||++|
T Consensus        71 ~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  110 (267)
T 3rft_A           71 LGGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFAS  110 (267)
T ss_dssp             CCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            998742  2345667888999999999999877644 455554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.53  E-value=2.3e-07  Score=87.50  Aligned_cols=119  Identities=24%  Similarity=0.383  Sum_probs=76.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHH----HhcccCC------------CcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD----VGHINTR------------SEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~d----l~~~~~~------------~~v~~~~~t~   88 (256)
                      +.+||+|||+ |.+|..+|..|+..|+  +|+++|+++.  ......    +......            .+++.   ++
T Consensus         4 ~~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~   77 (483)
T 3mog_A            4 NVQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VT   77 (483)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---EC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eC
Confidence            3569999998 9999999999999998  9999999831  111111    1111000            12333   34


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++ +++++||+||.+..              ++..+.+++.+++.+++ |++++  +||.+..-  + +++.+..  -.+
T Consensus        78 ~~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~--i-~~ia~~~--~~p  135 (483)
T 3mog_A           78 DI-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS--I-TAIAAEI--KNP  135 (483)
T ss_dssp             CG-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC--H-HHHTTTS--SSG
T ss_pred             CH-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCC--H-HHHHHHc--cCc
Confidence            55 47899999999852              13456677888888888 56654  56666542  2 3343322  235


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      .+++|+
T Consensus       136 ~~~ig~  141 (483)
T 3mog_A          136 ERVAGL  141 (483)
T ss_dssp             GGEEEE
T ss_pred             cceEEe
Confidence            678876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.53  E-value=5.4e-07  Score=84.78  Aligned_cols=124  Identities=17%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCc--hhHHHHHhcccC------------------CCcEEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT--PGVAADVGHINT------------------RSEVAGY   84 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~--~g~~~dl~~~~~------------------~~~v~~~   84 (256)
                      ++.|||+|||+ |++|.++|..|+.. |+. +|+++|+++.  .+.+..+.....                  ..+++. 
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-   92 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-   92 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-
Confidence            45689999998 99999999999999 864 8999999843  234444443210                  123443 


Q ss_pred             ecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCCchHHHHHHH
Q 025206           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVF  159 (256)
Q Consensus        85 ~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~~~~i~~~~~  159 (256)
                        +++ .+++++||+||++.+.|..+..++    ..++..+...++.|.++. |+.++|.-| -|.+..--+...++
T Consensus        93 --ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~il  162 (478)
T 3g79_A           93 --TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQIL  162 (478)
T ss_dssp             --ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHH
T ss_pred             --eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHH
Confidence              445 578999999999998886543220    012344556666777666 555555443 45554333433344

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.52  E-value=2.8e-07  Score=90.94  Aligned_cols=119  Identities=22%  Similarity=0.388  Sum_probs=77.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-hH--HHHH-h---ccc---------CCCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GV--AADV-G---HIN---------TRSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-g~--~~dl-~---~~~---------~~~~v~~~~~t~   88 (256)
                      +++||+|||+ |.+|..+|..++..|+  +|+++|++..  . +.  ..+. .   ...         ...+++.   ++
T Consensus       311 ~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  384 (725)
T 2wtb_A          311 KIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SL  384 (725)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ES
T ss_pred             cCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eC
Confidence            4568999998 9999999999999999  9999999831  1 11  0111 0   000         1123443   34


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ++ +++++||+||++..              ++..+.+++.+++.++++ ++++  +||.+..-   .+++.+..  -.+
T Consensus       385 d~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~---i~~la~~~--~~p  442 (725)
T 2wtb_A          385 DY-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTID---LNKIGERT--KSQ  442 (725)
T ss_dssp             SS-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHTTTC--SCT
T ss_pred             CH-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC---HHHHHHHh--cCC
Confidence            55 68999999999962              235566777888888884 5544  78876642   23443322  235


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      ++++|+
T Consensus       443 ~~~iG~  448 (725)
T 2wtb_A          443 DRIVGA  448 (725)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            677776

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.52  E-value=2.8e-07  Score=81.47  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC----CccccccCC--CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aD   98 (256)
                      ||||.|+||+|++|++++..|+..|+  +|+++|...   ......++....   ++..+.++    .++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46899999999999999999999998  999999742   111222333211   23322221    134456677  99


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+....+.+|++|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999864311  12345667889999999999999887655666665

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.52  E-value=4.6e-07  Score=82.15  Aligned_cols=98  Identities=14%  Similarity=0.217  Sum_probs=70.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc----------cCCCcEEEEecCCccccccCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------NTRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~----------~~~~~v~~~~~t~d~~eal~~a   97 (256)
                      +|||+|||+ |.+|.+++..|+..|+  +|.++|+++..  ...+...          ..+..++.   ++|+.+++++|
T Consensus        29 ~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~--~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~a  100 (356)
T 3k96_A           29 KHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDH--VDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGV  100 (356)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHH--HHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTC
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcC
Confidence            579999998 9999999999999998  99999987321  1112211          01223443   34777889999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      |+||++..                ...++++++++..+. |+.+++.++|..+
T Consensus       101 DvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~  137 (356)
T 3k96_A          101 TDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLA  137 (356)
T ss_dssp             CEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred             CEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            99999852                124677778888776 6778888888654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.52  E-value=2.6e-07  Score=81.70  Aligned_cols=118  Identities=19%  Similarity=0.261  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHH-HhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~d-l~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..+||+|||+ |.+|+.+|..|+ .|+  +|+++|+++. .....+ +.+.. ...++.   ++++. ++++||+||.+.
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlVieav   81 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEAV   81 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEECC
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEcC
Confidence            4579999998 999999999999 999  9999999842 111121 11111 012442   33554 489999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      ..              +..+.+.+..++... |++++  +||.+..-   .+++.+..  -.+.+++|+..
T Consensus        82 pe--------------~~~vk~~l~~~l~~~-~~~Il--asntSti~---~~~~a~~~--~~~~r~~G~Hf  130 (293)
T 1zej_A           82 FE--------------DLNTKVEVLREVERL-TNAPL--CSNTSVIS---VDDIAERL--DSPSRFLGVHW  130 (293)
T ss_dssp             CS--------------CHHHHHHHHHHHHTT-CCSCE--EECCSSSC---HHHHHTTS--SCGGGEEEEEE
T ss_pred             cC--------------CHHHHHHHHHHHhcC-CCCEE--EEECCCcC---HHHHHHHh--hcccceEeEEe
Confidence            32              245556666678877 88876  56655431   23333322  23567888743

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.52  E-value=3e-07  Score=82.16  Aligned_cols=112  Identities=15%  Similarity=0.073  Sum_probs=73.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-----CCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-----DSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-----~aDvV  100 (256)
                      +.|+|.|+||+|++|++++..|+..| .  +|+++|.........++.....  .... .....+.++++     ++|+|
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~--~~d~-~~~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNI--ADYM-DKEDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCC--SEEE-EHHHHHHHHHTTCCCSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceE--eeec-CcHHHHHHHHhhcccCCCCEE
Confidence            34789999999999999999999998 6  8999987632111111111111  1111 11122334555     59999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++|+.......+..+.+..|+.....+++.+.+...  .+|++|
T Consensus       120 ih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          120 FHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             EECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             EECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            9999865443345667788899999999999988766  445454

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.51  E-value=5.9e-07  Score=78.17  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=73.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC-----CCEEEEe
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED-----SDVVIIP  103 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~-----aDvVIi~  103 (256)
                      ||.|+||+|++|++++..|+.+| .  +|++++.........++........+.   ....+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999998 6  899998763221111222111111111   11234445654     9999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+.......+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865443345667788899999999999988866  455454

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.50  E-value=2.8e-07  Score=81.46  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC---C---CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN---P---LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~---~---~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aD   98 (256)
                      |||.|+||+|++|++++..|+.+   |   +  +|+++|.....+....+........+....++    .++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            58999999999999999999986   5   5  99999875211000111111101123333221    13445678999


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~S  126 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVS  126 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            999999864211  0123456788999999999999887543 455554

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.50  E-value=3e-07  Score=81.14  Aligned_cols=117  Identities=15%  Similarity=0.023  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCC--CCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aDvV  100 (256)
                      +.++|.|+||+|++|++++..|+.+|+  +|+++|.+........+.+......+..+.++    .++.+++++  .|+|
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   79 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV   79 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            346899999999999999999999998  99999987321110112211101123322211    123345554  5999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++||.....  ..+....+..|+.....+++.+.+......+|++|
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            9999865311  23455677889999999999988776434566554

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.50  E-value=1.5e-07  Score=83.54  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC----CccccccCCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN----DQLGQALEDSD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aD   98 (256)
                      +++|.|+||+|++|++++..|+.+  |+  +|+++|.+..   .....++.+    ..+..+.++    .++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCC
Confidence            579999999999999999999987  66  9999998531   111111211    123333221    23456788999


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||++||.....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            999999865311  012345678899999999999988754  566555

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.49  E-value=6.6e-07  Score=77.98  Aligned_cols=100  Identities=20%  Similarity=0.237  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||.|+||+||||++++..|..+|+  +|+.+.++...+            .+..   .....++++++|.||++|+.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~---~~~~~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW---DELAASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH---HHHHHHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec---chhhHhhccCCCEEEEeccCcc
Confidence            7999999999999999999999999  999987653211            1110   0011356889999999987532


Q ss_pred             CCC------CCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          109 KPG------MTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       109 ~~g------~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ...      ....++...|+...+.+++.++... +..+++..|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S  107 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT  107 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence            111      1134566778888999998888776 344455443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.49  E-value=3.1e-07  Score=86.86  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +|||.|+||+|++|++++..|+..|+  +|+.++.+....     ..      +... .+..+.++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~-----~~------v~~d-~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKP-----GK------RFWD-PLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCT-----TC------EECC-TTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCc-----cc------eeec-ccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999998  999999874221     00      1100 0112356789999999999865


Q ss_pred             CCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          108 RKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       108 ~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...   .....+++..|+.....+++.+.+...-..+|++|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            321   12345677889999999999855444333555555

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.48  E-value=1.7e-07  Score=83.61  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvVI  101 (256)
                      |||.|+||+|++|++++..|+.. |+  +|+++|.....+....+.+......+..+.++    .++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999999887 67  99999875310000111111001133333221    12334566  899999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh--CCC------cEEEEec
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY--CPN------AIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~--~p~------~~iiv~t  145 (256)
                      ++||.....  ..+..+.+..|+.....+++.+.+.  ...      +.+|++|
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~S  132 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIS  132 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEE
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeC
Confidence            999865310  1123456788999999999998887  533      3566665

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.48  E-value=2.1e-07  Score=83.47  Aligned_cols=112  Identities=15%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDV   99 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDv   99 (256)
                      +.+|||.|+||+|++|++++..|+.+ |+  +|+.+|.+....  .++..   ...++...++     ..+.++++++|+
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVK---HERMHFFEGDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGG---STTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhcc---CCCeEEEeCccCCCHHHHHHHhccCCE
Confidence            35679999999999999999999987 87  999999873211  11111   1123333221     124456789999


Q ss_pred             EEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          100 VIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ||++|+......  .+..+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999998653211  2345667888888899999998887  45666654

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.48  E-value=1.5e-06  Score=76.85  Aligned_cols=118  Identities=12%  Similarity=0.048  Sum_probs=75.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccC-CCcEEEEec----CCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINT-RSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~-~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      +.++|.|+||+|++|++++..|+.+|+  +|+.++.+... ....++.+... ...++.+.+    ..++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999998  89887765321 11112211000 002222221    23455678999999


Q ss_pred             EEecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          101 IIPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++|+.......+. .+.+..|+.....+++.+.+...-..+|++|.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            99997542212222 34678899999999999988763345665653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.46  E-value=4.8e-07  Score=75.22  Aligned_cols=101  Identities=22%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC---CccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t---~d~~eal~~aDvVIi~ag  105 (256)
                      |||.|+||+|++|+.++..|+.+|.  +|++++++...  ..++...    .++.+.++   .+. +++.++|+||++||
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            6899999999999999999999998  99999986321  1222211    12222211   111 57899999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ....+..     ...|....+.+++.+++.+  ..+|++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            7532222     2457888899999888776  5566665

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.46  E-value=4.5e-07  Score=81.99  Aligned_cols=110  Identities=15%  Similarity=-0.004  Sum_probs=75.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      ++|+|.|+||+|++|++++..|+..|+  +|+++|.+.....  .+...    .++.+.++    .++.++++++|+||+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~v~~~~~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhccC----CceEEECCCCCHHHHHHHhCCCCEEEE
Confidence            467999999999999999999999998  9999998632110  01110    12222111    134567889999999


Q ss_pred             ecCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+.....   ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus       100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~S  144 (379)
T 2c5a_A          100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYAS  144 (379)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99865321   2345667888999999999999876544 455554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.45  E-value=4.4e-07  Score=85.45  Aligned_cols=105  Identities=13%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCcc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQL   90 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~   90 (256)
                      ..|||+|||+ |+||..+|..|+..|+  +|+++|+++.+  +..+.....                ..+++.   ++++
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            4689999998 9999999999999998  99999997321  111221100                112443   4566


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      .+++++||+||++.+.|.+.... .     ++..++++++.|.++. |+.+|+..|
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~~-~-----dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDGS-A-----DLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTSS-B-----CCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHHhhcCCEEEEEeCCCcccCCC-c-----cHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            67889999999999887643321 1     2455667777777776 555555444

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.44  E-value=2e-06  Score=75.19  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-----CC----cEEEEecCCccccccCCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS----EVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-----~~----~v~~~~~t~d~~eal~~aD   98 (256)
                      +|||+|||+ |.+|..++..|...|+  +|+++|++...  ...+.+...     ..    .+.... ..++.++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCCC
Confidence            579999998 9999999999999998  99999987321  112221110     00    011111 112223445999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      +||++...                ..+.++++.+.++. |+.+++.++|..+
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            99998521                12356667777765 6788888888776

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.43  E-value=9.8e-07  Score=72.92  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Ccc-ccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL-GQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~-~eal~~aDvVIi~ag~  106 (256)
                      |||.|+||+|++|+.++..|+.+|+  +|++++++....  .++. .    .++...++ +|. .+++.++|+||++||.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~-~----~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH-K----DINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC-S----SSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc-C----CCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            6899999999999999999999998  999999874321  1222 1    12222211 110 1578999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...       ...|....+.+++.+++... ..+|++|.
T Consensus        72 ~~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           72 SPDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             STTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             Cccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            5321       23467788888988887643 35555653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.42  E-value=4.5e-07  Score=80.00  Aligned_cols=114  Identities=18%  Similarity=0.069  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEecC----CccccccCC--C
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGN----DQLGQALED--S   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--a   97 (256)
                      .++||.|+||+|++|++++..|+..|+  +|+++|.+...   ....++..   ...+..+.++    .++.+++++  .
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHcCC
Confidence            357999999999999999999999998  99999986321   11122211   1123332221    123345554  6


Q ss_pred             CEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+||++|+.....  ..+..+.+..|+.....+++.+.+.+....+|++|
T Consensus        88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999999864321  23456677889999999999998886434566555

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.42  E-value=1.1e-06  Score=82.00  Aligned_cols=111  Identities=18%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc----------------CCCcEEEEecCCcc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQL   90 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~   90 (256)
                      ...+|+|||+ |++|.++|..|+..|+  +|+++|+++.+  +..+....                ...+++.   ++|+
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~k--v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~   78 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARK--IELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDL   78 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTT--HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCH
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCH
Confidence            3468999998 9999999999999999  99999998422  11122210                0123443   4577


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCC
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNS  150 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t-NPvd~  150 (256)
                      .+++++||+||++.++|..++....|     +..++++++.|.++. ++.++|..| -|.+.
T Consensus        79 ~ea~~~aDvvii~Vptp~~~~~~~~D-----l~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           79 AEGVKDADAVFIAVGTPSRRGDGHAD-----LSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             HHHHTTCSEEEECCCCCBCTTTCCBC-----THHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             HHHHhcCCEEEEEcCCCCccccCCcc-----HHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            78999999999999888653111222     345566667777665 555555544 45553

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.40  E-value=5.3e-07  Score=84.52  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhccc---------------CCCcEEEEecCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGND   88 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~   88 (256)
                      .++|||+|||+ |.||.+++..|+..  |+  +|+++|+++.+  ...+....               ....++.   ++
T Consensus         3 ~~~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~   74 (467)
T 2q3e_A            3 FEIKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---ST   74 (467)
T ss_dssp             CCCCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ES
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---EC
Confidence            34689999998 99999999999988  66  99999997321  11121110               0012332   34


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd~  150 (256)
                      ++.+++++||+||++.+.|........+ -.-++..+.+.++.+.++. |+.+++.. |+|.+.
T Consensus        75 ~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~  137 (467)
T 2q3e_A           75 NIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA  137 (467)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred             CHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence            6667889999999998877543210000 0112345566777777665 55555554 567764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.39  E-value=5.2e-07  Score=79.90  Aligned_cols=119  Identities=15%  Similarity=0.076  Sum_probs=76.5

Q ss_pred             ccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Ccccccc
Q 025206           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQAL   94 (256)
Q Consensus        19 ~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal   94 (256)
                      ++.-+...+.|+|.|+||+|++|++++..|+.+|+  +|+++|.+.....  ++.+..  ..+..+.++    .++.+++
T Consensus        11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~   84 (330)
T 2pzm_A           11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAF   84 (330)
T ss_dssp             ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHH
Confidence            33445555668999999999999999999999997  9999998631100  011100  123322221    1244567


Q ss_pred             C--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           95 E--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        95 ~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +  ++|+||++||..........+ +..|+.....+++.+.+.... .+|++|
T Consensus        85 ~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           85 DSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             HHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             hhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            7  999999999865332122333 778999999999999877643 555554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.38  E-value=2.3e-07  Score=83.73  Aligned_cols=170  Identities=14%  Similarity=0.054  Sum_probs=97.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVI  101 (256)
                      ++|||.|+||+|++|++++..|+.+| .  +|+++|.+..... ..+..   ...++.+.++    .++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45799999999999999999999998 7  9999987632110 01110   1123333221    13456788999999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCchHHHHHHHH--HhC---CC-CCCcEEE
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFK--KAG---TY-NEKKLFG  172 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd~~~~i~~~~~~--~~~---~~-~~~kviG  172 (256)
                      ++|+.....  ..+..+.+..|+.....+++.+.+. ... .+|++|... +...--...+.  +..   .. ++...+|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCchH
Confidence            999864211  1234567788999999999998776 433 455555321 10000000000  000   01 1222233


Q ss_pred             EeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      .+.....++-..+++..|++..-++ +.|+|..
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~  215 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPG  215 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence            3334444555555666688777777 5688865

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.38  E-value=5.6e-07  Score=78.77  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=57.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEecCCccccccCC--CCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~eal~~--aDvVIi~a  104 (256)
                      +||.|+||+|++|++++..|+.+|+  +|+++|.++...  ...|+.+            ..++.+++++  +|+||++|
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~Dl~d------------~~~~~~~~~~~~~d~vih~A   68 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARPKFEQVNLLD------------SNAVHHIIHDFQPHVIVHCA   68 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC------------------------------CHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCCCeEEecCCC------------HHHHHHHHHhhCCCEEEECC
Confidence            5899999999999999999999997  999998653220  1112221            1234456664  89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |.....  ..+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             -------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            864321  123445677888999999999888754  566555

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.38  E-value=3.2e-07  Score=76.40  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVIi~  103 (256)
                      |||.|+||+|++|+.++..|+..|+  +|++++++....     ...   ..++...++     .++.++++++|+||++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~-----~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQV-----PQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGS-----CCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccch-----hhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5899999999999999999999997  999999873210     000   122222211     2355678999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ||.....      .+..|+.....+++.+++.... .+|++|.
T Consensus        71 ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            9876422      2344666677788888776543 5555554

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.37  E-value=3.2e-07  Score=80.51  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=73.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCC--CCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aDvV  100 (256)
                      +.++|.|+||+|++|++++..|+.+|+  +|+++|.+.....   +       .+..+.++    .++.+++++  .|+|
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~---l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~v   78 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAKL---P-------NVEMISLDIMDSQRVKKVISDIKPDYI   78 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCCC---T-------TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccc---c-------eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            457999999999999999999999998  9999998632110   1       12222211    123445655  8999


Q ss_pred             EEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++|+....  ...+..+.+..|+.....+++.+.+......+|++|
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            999986431  112456678889999999999997664345566665

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.37  E-value=4e-06  Score=73.29  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +++||+|||+ |.+|.+++..|...|+ ..+|+++|++...  ..++.+. +  .++.   ..+..+++++||+||++..
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~-~--gi~~---~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEK-C--GVHT---TQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHT-T--CCEE---ESCHHHHHSSCSEEEECSC
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHH-c--CCEE---eCChHHHHhcCCeEEEEeC
Confidence            4579999998 9999999999999885 5589999987432  2222221 1  1232   2355678999999999861


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                          +            ..+.++++++..+  .++.++|.+++.+..     ..+.+..+  ++.+++++
T Consensus        73 ----p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~~-----~~l~~~l~--~~~~vvr~  119 (280)
T 3tri_A           73 ----P------------HQIKMVCEELKDILSETKILVISLAVGVTT-----PLIEKWLG--KASRIVRA  119 (280)
T ss_dssp             ----G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCCH-----HHHHHHHT--CCSSEEEE
T ss_pred             ----H------------HHHHHHHHHHHhhccCCCeEEEEecCCCCH-----HHHHHHcC--CCCeEEEE
Confidence                1            1134555666655  466677777777662     33434332  23567765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.35  E-value=9e-07  Score=73.76  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             Cce-EEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEE
Q 025206           28 DRK-VAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVI  101 (256)
Q Consensus        28 ~~K-I~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVI  101 (256)
                      ||| |.|+||+|++|+.++..|+ ..|+  +|++++++... ...++...  ...+..+.++    .++.++++++|+||
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            345 9999999999999999999 8998  99999986320 11122101  1123332211    23456789999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +++|..             |+. .+.+++.+++.... .+|++|
T Consensus        79 ~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           79 VGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             ESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            999753             344 77888888776644 455554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.35  E-value=2.8e-07  Score=79.90  Aligned_cols=98  Identities=21%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~a  104 (256)
                      .++||.|+||+|++|++++..|+.+|+  +|+++|.+.     .|+.+.            .++.++++  ++|+||++|
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih~A   71 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVINCA   71 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEECC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEECC
Confidence            468999999999999999999999997  999998752     122221            12344565  799999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |.....  ..+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            864311  123456778899999999999988764  555554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.35  E-value=1.1e-06  Score=71.64  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi~a  104 (256)
                      |||.|+||+|++|+.++..|+.+|+  +|++++.+....     ... ....++.+.++    .++.++++++|+||+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~-----~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL-----PSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS-----CSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc-----ccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999997  999999873210     100 01122222211    23556789999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |.......     ...|......+++.+.+.... .+|++|
T Consensus        76 ~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLSP-----TTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCCc-----cchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            86532111     125677788888888877644 455555

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.34  E-value=6.8e-07  Score=88.07  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-hH--HHH----HhcccC---------CCcEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GV--AAD----VGHINT---------RSEVAGYMGN   87 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-g~--~~d----l~~~~~---------~~~v~~~~~t   87 (256)
                      .+.+||+|||+ |.+|+.+|..++..|+  +|+++|++..  . +.  ..+    +.....         ..+++.   +
T Consensus       312 ~~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~  385 (715)
T 1wdk_A          312 KDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---T  385 (715)
T ss_dssp             CCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---E
T ss_pred             ccCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---E
Confidence            34568999998 9999999999999999  9999999831  1 10  000    111110         012332   3


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~  166 (256)
                      +++ +++++||+||++..              ++..+.+++.+.+.+++ |++++  +||.+..-   .+++.+..  -.
T Consensus       386 ~d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~---i~~la~~~--~~  443 (715)
T 1wdk_A          386 LSY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTIS---ISLLAKAL--KR  443 (715)
T ss_dssp             SSS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHGGGC--SC
T ss_pred             CCH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCCC---HHHHHHHh--cC
Confidence            455 68999999999952              13455677778888887 56654  67766541   23443322  23


Q ss_pred             CCcEEEE
Q 025206          167 EKKLFGV  173 (256)
Q Consensus       167 ~~kviG~  173 (256)
                      +++++|+
T Consensus       444 ~~~~ig~  450 (715)
T 1wdk_A          444 PENFVGM  450 (715)
T ss_dssp             GGGEEEE
T ss_pred             ccceEEE
Confidence            4567765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.33  E-value=6.8e-07  Score=75.33  Aligned_cols=93  Identities=22%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEE-EeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~L-iD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ++|||+|||+ |.+|..++..|...|+  +|.+ +|++..  +....++.     ....    . +..++++++|+||++
T Consensus        22 ~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~----~-~~~~~~~~aDvVila   88 (220)
T 4huj_A           22 SMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK----A-VELKDALQADVVILA   88 (220)
T ss_dssp             GSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE----E-CCHHHHTTSSEEEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc----c-ChHHHHhcCCEEEEe
Confidence            4679999998 9999999999999998  8888 888742  22222221     1111    1 224568999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ...                ..+.++++.+.. .++.+++.++||..
T Consensus        89 vp~----------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           89 VPY----------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             SCG----------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             CCh----------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            521                123455555554 45678888999984

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.33  E-value=6.1e-07  Score=78.64  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~a  104 (256)
                      ..|||.|+||+|++|++++..|+.+|+  +|++++.+..    .|+.+            ..++.++++  ++|+||++|
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcC
Confidence            357999999999999999999999998  8888875421    12222            113345666  899999999


Q ss_pred             CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          105 GVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       105 g~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +.....   ..+..+.+..|+.....+++.+.+.... .+|.+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  107 (321)
T 1e6u_A           64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGS  107 (321)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence            865311   1234567788999999999999886543 5555653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.33  E-value=5.3e-07  Score=75.93  Aligned_cols=112  Identities=18%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDvVIi  102 (256)
                      +.++|.|+||+|++|++++..|+.+|...+|+++|.+.....  ++...    .+..+.    ...++.++++++|+||+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~~~~~~~~~~d~vi~   90 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAYK----NVNQEVVDFEKLDDYASAFQGHDVGFC   90 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGGG----GCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc--ccccC----CceEEecCcCCHHHHHHHhcCCCEEEE
Confidence            456899999999999999999999887558999998732100  00000    111111    12345677889999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +||.... .....+.+..|+.....+++.+.+.... .+|++|.
T Consensus        91 ~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS  132 (242)
T 2bka_A           91 CLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSS  132 (242)
T ss_dssp             CCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CCCcccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEcc
Confidence            9986421 1123456677888888899888776543 5555653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.31  E-value=4.9e-06  Score=69.57  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=56.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ..+||+|||+ |.+|+.++..|...|+  +|.++|.++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            4579999998 9999999999999998  9999987532                           3578999999863 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      +               ..++++++.+..+.++.+++.++|+.+
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               112344444443334778888999665

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.31  E-value=3.1e-07  Score=79.41  Aligned_cols=96  Identities=22%  Similarity=0.260  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~  106 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+.++..+     .|+.+.            .++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999999997  999998732     222221            12334555  69999999986


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .....  .+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            53211  35667788899999999999998875  455554

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.30  E-value=1.1e-06  Score=77.05  Aligned_cols=113  Identities=11%  Similarity=-0.008  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CCc---h-hHHHHHhcccCCCcEEEEe----cCCccccccCCCCE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT---P-GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~~---~-g~~~dl~~~~~~~~v~~~~----~t~d~~eal~~aDv   99 (256)
                      ++|.|+||+|++|++++..|+.+|+  +|+.++. +..   . ....++....  ..+..+.    ...++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGAS--EKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHH--HHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccC--CceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999998  9988876 421   1 1111111000  0122111    12245567899999


Q ss_pred             EEEecCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       100 VIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ||++|+.......+ ..+.+..|+.....+++.+.+...-..+|++|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99999643111111 23467889999999999888762123455554

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.29  E-value=3.1e-06  Score=75.37  Aligned_cols=174  Identities=13%  Similarity=0.003  Sum_probs=97.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccC---CCcEEEEecC----CccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYMGN----DQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~---~~~v~~~~~t----~d~~eal~~a   97 (256)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|.+..  .....++.....   ...+..+.++    .++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            457999999999999999999999998  9999998631  111122211000   0123333221    1345678899


Q ss_pred             CEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus        98 DvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      |+||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|...-. ..--.....+....++...+|.+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~-~~~~~~~~~E~~~~~~~~~Y~~sK  181 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTY-GDHPGLPKVEDTIGKPLSPYAVTK  181 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGG-TTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhc-CCCCCCCCCCCCCCCCCChhHHHH
Confidence            9999999864211  1234556778999999999998876543 45555421100 000000000000001122223333


Q ss_pred             chHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      ....++-..+++..|++..-++ +.|+|..
T Consensus       182 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~  211 (352)
T 1sb8_A          182 YVNELYADVFSRCYGFSTIGLRYFNVFGRR  211 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECceeCcC
Confidence            3334444555666687777777 5688854

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.28  E-value=9.5e-07  Score=79.16  Aligned_cols=115  Identities=17%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecC----CccccccCCC
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN----DQLGQALEDS   97 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~a   97 (256)
                      +.+.++|.|+||+|++|+.++..|+.. |. .+|++++.+...  ....++..    ..++.+.++    ..+.++++++
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~   92 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGV   92 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTC
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcC
Confidence            345679999999999999999999987 73 389999987321  11122221    123333221    2345678899


Q ss_pred             CEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           98 DVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+||++|+....+.  .+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            99999998653211  234567888999999999999887644 455554

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.28  E-value=4.5e-07  Score=78.72  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC--CCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~--aDvVIi~ag~  106 (256)
                      |||.|+||+|++|++++..|+ +|+  +|+.+|.+.. ....|+.+            ..++.+++++  +|+||++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d------------~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCC------------HHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999999 787  9999987631 00012211            1134456665  9999999986


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...  ...+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1234566788899999999999887654  455554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.27  E-value=3.9e-06  Score=74.73  Aligned_cols=102  Identities=16%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEE
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      ..+++|||+|||+ |.+|..++..|...|..  .+|+++|++........+....    ++.   +.+..+++++||+||
T Consensus        18 ~~~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~---~~~~~e~~~~aDvVi   89 (322)
T 2izz_A           18 LYFQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKL---TPHNKETVQHSDVLF   89 (322)
T ss_dssp             ----CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEE---ESCHHHHHHHCSEEE
T ss_pred             hccCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEE---eCChHHHhccCCEEE
Confidence            3446689999998 99999999999988831  2899999874211222233211    222   224457788999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      ++.. +               ..+.++++.+.... |+.+||.++|.+.
T Consensus        90 lav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           90 LAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             ECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             EEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            9963 1               12345556666654 6778888888876

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.26  E-value=4.9e-07  Score=77.55  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi~a  104 (256)
                      ++|.|+||+|++|++++..|+..|+  +|+++|.+....    +.     ..+..+.+    ..++.++++++|+||++|
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AE-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CC-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cC-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999999887  999998863211    00     01121111    123456788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +..  ......+.+..|+.....+++.+.+.... .+|++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            865  22345567788999999999998876543 444444

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.26  E-value=1.6e-06  Score=71.95  Aligned_cols=99  Identities=20%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+|+||+|.+|+.++..|...|+  +|+++|.+..  .....++........+. .   .++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASIT-G---MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEE-E---EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCC-h---hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999999998  9999998732  11111111000001233 1   2456778999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                               +.       ++++++.+.+..++.+++..+|+.+
T Consensus        75 ---------~~-------~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ---------EH-------AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ---------HH-------HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ---------hh-------HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                     11       2233334433335778888899765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.26  E-value=3.2e-06  Score=75.22  Aligned_cols=68  Identities=24%  Similarity=0.345  Sum_probs=51.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .++|||+|||+ |.+|..++..|+..|+  +|+++|+++..  ...+.+..    +..   .+++.+++++||+||++..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPAR--AASLAALG----ATI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTT----CEE---ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHH--HHHHHHCC----CEe---eCCHHHHHhcCCEEEEECC
Confidence            35679999998 9999999999999998  99999987422  22333321    222   2366788999999999863

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.26  E-value=4.3e-07  Score=79.51  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=91.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvVIi  102 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+++|...... ...+..     .+....++    .++.++++  ++|+||+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~-~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATGK-RENVPK-----GVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSCC-GGGSCT-----TCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcCc-hhhccc-----CeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999999998  999998742110 001110     11111111    12345566  8999999


Q ss_pred             ecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHH---------HhCCCCCCcEE
Q 025206          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK---------KAGTYNEKKLF  171 (256)
Q Consensus       103 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~---------~~~~~~~~kvi  171 (256)
                      +|+.....  ..+....+..|+.....+++.+.+.... .+|++|....        ++-         +....++...+
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~--------~~g~~~~~~~~~E~~~~~~~~~Y  143 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGA--------IYGEVPEGERAEETWPPRPKSPY  143 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHH--------HHCCCCTTCCBCTTSCCCCCSHH
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChh--------hcCCCCCCCCcCCCCCCCCCChH
Confidence            99764211  1234456778999899999998876543 4555542100        000         00001122223


Q ss_pred             EEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      |.+.....++-..+++..|++..-++ ..++|..
T Consensus       144 ~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          144 AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            33333334444555666777776676 4688853

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.26  E-value=4.1e-07  Score=80.05  Aligned_cols=109  Identities=16%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvVI  101 (256)
                      ||||.|+||+|++|++++..|+..|+  +|+++|....... ..+..     .++...++    .++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            46899999999999999999999997  9999987631100 11111     12222211    12345566  899999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            999864211  1234566788999999999998876543 455555

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.25  E-value=3.5e-06  Score=72.10  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch----hH--------HHHHhcccCCCcEEEEecCCc
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GV--------AADVGHINTRSEVAGYMGNDQ   89 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~----g~--------~~dl~~~~~~~~v~~~~~t~d   89 (256)
                      .......+||+|||+ |.+|.+++..|+..|+  +|+++|+++..    ..        ..++... .. ...    ..+
T Consensus        13 ~~~~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----~~~   83 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-HP-HVH----LAA   83 (245)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGG-ST-TCE----EEE
T ss_pred             cccccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-cC-cee----ccC
Confidence            333445689999998 9999999999999998  99999987322    00        1222221 11 121    124


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ..+++++||+||++....    .     .   .+.+.++.   ....++.++|.++||.
T Consensus        84 ~~e~~~~aDvVilavp~~----~-----~---~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           84 FADVAAGAELVVNATEGA----S-----S---IAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHHHHHCSEEEECSCGG----G-----H---HHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HHHHHhcCCEEEEccCcH----H-----H---HHHHHHhh---hhhcCCCEEEECCCCC
Confidence            567889999999986321    0     1   12233331   2222778999999986

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.25  E-value=1e-06  Score=72.66  Aligned_cols=106  Identities=12%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi~  103 (256)
                      .|||.|+||+|++|+.++..|+.+|...+|++++.+...      .+.    .+....+    ..++.+++  +|+||++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~~----~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHP----RLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCT----TEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cCC----CceEEeccccCHHHHHHhh--hcEEEEC
Confidence            368999999999999999999999865589999886422      010    1111111    11333444  8999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +|.......+..+.+..|......+++.+.+.... .+|++|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98653222345667788999999999998877543 4555553

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.25  E-value=8.9e-07  Score=80.09  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh------------------HHHHHhcccCCCcEEEEecC-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG------------------VAADVGHINTRSEVAGYMGN-   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g------------------~~~dl~~~~~~~~v~~~~~t-   87 (256)
                      ++++|.|+||+|++|++++..|+.+|+  +|+++|......                  ...++.+.. ...+..+.++ 
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~Dl   86 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDI   86 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCT
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECCC
Confidence            568999999999999999999999998  999998752110                  111111000 1123322221 


Q ss_pred             ---CccccccCC--CCEEEEecCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           88 ---DQLGQALED--SDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        88 ---~d~~eal~~--aDvVIi~ag~~~~~--g~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                         .++.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+.+....+|++|.
T Consensus        87 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           87 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence               123445666  99999999864311  1122   23567899999999999988875335666653

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.24  E-value=4.1e-06  Score=73.84  Aligned_cols=109  Identities=16%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C----ccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D----QLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~----d~~eal~~aDvVIi  102 (256)
                      |||.|+||+|++|++++..|+.+ |+  +|+++|.+....  .++..   ...++.+.++ .    .+.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999987 77  999999864211  11111   1123333221 1    23446678999999


Q ss_pred             ecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +|+.....  ..+..+.+..|+.....+++.+.+..  ..+|++|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99864311  12345567788888889999888765  46666654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.23  E-value=4.9e-07  Score=78.93  Aligned_cols=109  Identities=18%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .++||.|+||+|++|++++..|+..|+  +|+.+|.....  +....+.+......++.      +..++.++|+||++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            357999999999999999999999998  99999886320  00011111100011111      123455999999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.....  .....+.+. |+.....+++.+.+.+.. .+|++|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~S  118 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGS  118 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEec
Confidence            864310  112223455 999999999999988744 445444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.23  E-value=1.1e-06  Score=77.74  Aligned_cols=111  Identities=19%  Similarity=0.118  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCC--CCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aDvV  100 (256)
                      ++|+|.|+||+|++|++++..|+..|.  +|+++|.+..... ..+.+.   ..+..+.++    .++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            457999999999999999999999997  9999998631100 011110   123322221    123456667  9999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++||..........+ +..|+.....+++.+.+.... .+|++|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999865332122233 778999999999998876543 455554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.23  E-value=2.8e-06  Score=76.06  Aligned_cols=101  Identities=21%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-------CccEEEEEeCCCc-----hhHHHHHhccc--------CCCcEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHIN--------TRSEVAGYMG   86 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-------~~~eV~LiD~~~~-----~g~~~dl~~~~--------~~~~v~~~~~   86 (256)
                      .+|||+|||+ |.+|..++..|+..|       +  +|.++|.++.     ....+.-.+..        .+..+..   
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---   80 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---   80 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---
Confidence            4579999998 999999999998887       5  9999998743     22222111110        0112332   


Q ss_pred             CCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        87 t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      ++++.+++++||+||++...                ..+.++++.+..+. |+.+++.++|..+
T Consensus        81 ~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            34566778999999999521                12455666776665 6788888888543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.22  E-value=2.4e-06  Score=71.87  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      ++++|.|+||+|++|++++..|+..  |.  +|++++.+...  ..++..     .+..+.+    ..++.++++++|+|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGG-----EADVFIGDITDADSINPAFQGIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTC-----CTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCC-----CeeEEEecCCCHHHHHHHHcCCCEE
Confidence            4579999999999999999999998  66  99999986321  112211     1111111    12455678899999


Q ss_pred             EEecCCCCC------------CCC---CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRK------------PGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~------------~g~---~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++||....            +..   ...+.+..|+.....+++.+.+.... .+|++|
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           74 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             EECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             EEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            999986421            110   01134677888889999999887643 455554

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.21  E-value=3.7e-06  Score=74.87  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=75.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----CccccccCC--CC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~--aD   98 (256)
                      +.|+|.|+||+|++|++++..|+..|+  +|+++|.+.  .......+..   ...+..+.++    .++.+++++  +|
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d   82 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPE   82 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCC
Confidence            357999999999999999999999998  999999863  2111111110   1122222211    123345555  89


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +||++||.+...  ..+..+.+..|+.....+++.+.+......+|++|.
T Consensus        83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            999999864211  123456678899999999999988753345666653

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.20  E-value=5.6e-06  Score=77.47  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcC---CCccEEEEEeCCCchhH-HHHHhccc--------------CCCcEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLN---PLVSRLALYDIANTPGV-AADVGHIN--------------TRSEVAGYMGN   87 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~---~~~~eV~LiD~~~~~g~-~~dl~~~~--------------~~~~v~~~~~t   87 (256)
                      .++++|.|+||+|++|+.++..|+..   |.  +|++++....... ...+.+..              ...++..+.++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            45679999999999999999999987   66  9999998742111 11111110              01234444322


Q ss_pred             C----------ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           88 D----------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        88 ~----------d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      -          ++.+.++++|+||++|+....  ....+.+..|+.....+++.+.+.....++.+.|
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            1          234556789999999987533  2333457789999999999988776555554444

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.20  E-value=4.3e-06  Score=70.55  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEecCCcccccc----CCCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~t~d~~eal----~~aDvVI  101 (256)
                      ++|.|+||+|++|++++..|+.+|.  +|+++|.+...   ....|+.+..            ++.+++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~~------------~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRET------------AVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccHH------------HHHHHHHHcCCCccEEE
Confidence            4799999999999999999999998  99999987311   1122333211            122233    3899999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ++||.... .......+..|+.....+++.+.+.   ...+.+|++|.
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99987542 2335566778877777777766554   22356666653

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.19  E-value=6.7e-06  Score=73.43  Aligned_cols=116  Identities=13%  Similarity=0.037  Sum_probs=70.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhccc--CCCcEEEEecC----CccccccCC--
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN--TRSEVAGYMGN----DQLGQALED--   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~--~~~~v~~~~~t----~d~~eal~~--   96 (256)
                      +++|.|+||+|++|++++..|+.+|.  +|+++|.+...   ....++....  ....+..+.++    .++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            36899999999999999999999997  99999876321   1111111100  01123322211    123344554  


Q ss_pred             CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC--cEEEEec
Q 025206           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPN--AIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~--~~iiv~t  145 (256)
                      .|+||++||.....  ..+....+..|+.....+++.+.+...+  ..+|++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864322  1334556778988999999999887642  5666665

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.19  E-value=2.1e-06  Score=73.55  Aligned_cols=92  Identities=16%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc--cEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~--~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++|||+|||+ |.+|+.++..|...|..  .+|.++|.++..       .     .+..   ..+..++++++|+||++.
T Consensus         3 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~v   66 (262)
T 2rcy_A            3 ENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCAV   66 (262)
T ss_dssp             SSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEEe
Confidence            4579999998 99999999999888721  289999987432       1     1221   235567788999999996


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      . +   .            .+.++++.+..+.++..++..+|.++.
T Consensus        67 ~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           67 K-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             C-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             C-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            3 1   1            134555566666677888888888873

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.18  E-value=3.6e-07  Score=82.18  Aligned_cols=93  Identities=16%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||.|+||+|++|++++..|+.+|.. +|+.+|++         .+            ..++.++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~d------------~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------TK------------EEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------CC------------HHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------CC------------HHHHHHHhccCCEEEECCcCCC
Confidence            68999999999999999999988752 78888874         00            1133456778999999998654


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..  +..+.+..|+...+.+++.+++.+....+|.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            22  223344567788888999888777554566555

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.18  E-value=3.2e-07  Score=79.45  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCC-CCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALED-SDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~-aDvVI  101 (256)
                      ++|||.|+|+ |++|++++..|+.+|+  +|+.++.+...     +.     ..++.+.+    ..++.+++++ +|+||
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~-----~~~~~~~~Dl~d~~~~~~~~~~~~d~vi   68 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MP-----AGVQTLIADVTRPDTLASIVHLRPEILV   68 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CC-----TTCCEEECCTTCGGGCTTGGGGCCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cc-----cCCceEEccCCChHHHHHhhcCCCCEEE
Confidence            4679999996 9999999999999998  99999986321     00     01111111    1234456666 99999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++|+...   .+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        69 h~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           69 YCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             ECHHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             EeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            9987532   122344566888889999988865543 455554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.17  E-value=3.6e-06  Score=74.45  Aligned_cols=69  Identities=10%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..++|||+|||+ |.+|..++..|+..|+  +|+++|+++....  ++.+..    +..   .+++.+++++||+||++.
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCCHHHHHHhCCEEEEEc
Confidence            335689999998 9999999999999998  9999999843222  222211    221   346678889999999986


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      .
T Consensus        86 p   86 (310)
T 3doj_A           86 S   86 (310)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.17  E-value=3.1e-06  Score=74.88  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-------CccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCcccccc-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQAL-   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-------~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal-   94 (256)
                      +.|+|.|+||+|++|++++..|+.+|       .  +|+++|.+......  .    ....+..+.+    ..++.+++ 
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHHHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHHHh
Confidence            56799999999999999999999888       5  89999986321100  0    0112332221    12334456 


Q ss_pred             CCCCEEEEecCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~----p~~~iiv~t  145 (256)
                      .++|+||++||..... ..+..+.+..|+.....+++.+.+..    +...+|++|
T Consensus        85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            4899999999864310 12344567788888888999888765    234555554

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.16  E-value=5.8e-06  Score=74.96  Aligned_cols=100  Identities=11%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCC-------CccEEEEEeCCCc-h--hHHHHHhccc----------CCCcEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-P--GVAADVGHIN----------TRSEVAGYMGN   87 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~-------~~~eV~LiD~~~~-~--g~~~dl~~~~----------~~~~v~~~~~t   87 (256)
                      +|||+|||+ |.+|+.++..|+..|       +  +|+++|.++. .  .....+....          .+..+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            469999998 999999999998887       6  8999998743 0  0222222110          1112332   3


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----hC-CCcEEEEecCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVN  149 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~----~~-p~~~iiv~tNPvd  149 (256)
                      +++.+++++||+||++..                ...+.++++.+..    +. |+.+++..+|.++
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            455677899999999852                1235667777776    54 6788888888644

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.16  E-value=7.4e-06  Score=72.71  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH--h-cccCCCcEEE--EecCCccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--G-HINTRSEVAG--YMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl--~-~~~~~~~v~~--~~~t~d~~eal~~aDvVIi~  103 (256)
                      |||+|||+ |.+|..++..|...|+  +|.++|.++. ....+.  . +.........  ...+.+.+++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            69999998 9999999999999998  9999998752 111110  0 0001111111  00123444555599999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      .-...                +.++++.+..+. |+..|+.+.|-++..     +.++..  +|.++|++-
T Consensus        79 vK~~~----------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-----~~l~~~--~~~~~vl~g  126 (320)
T 3i83_A           79 IKVVE----------------GADRVGLLRDAVAPDTGIVLISNGIDIE-----PEVAAA--FPDNEVISG  126 (320)
T ss_dssp             CCCCT----------------TCCHHHHHTTSCCTTCEEEEECSSSSCS-----HHHHHH--STTSCEEEE
T ss_pred             cCCCC----------------hHHHHHHHHhhcCCCCEEEEeCCCCChH-----HHHHHH--CCCCcEEEE
Confidence            63221                123344555544 678888899988742     223333  666677654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.14  E-value=3.7e-06  Score=72.41  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      |||.|+||+|++|++++..|+.+  |+  +|++++.+.....  ++....    ++...+    ..++.++++++|+||+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~----~~~~~~D~~d~~~l~~~~~~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQG----VEVRHGDYNQPESLQKAFAGVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTT----CEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcC----CeEEEeccCCHHHHHHHHhcCCEEEE
Confidence            47999999999999999999988  76  8999998742211  122111    121111    1245567899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +|+..  .+  .    ..|+.....+++.+.+.+.. .+|++|
T Consensus        73 ~a~~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           73 ISGPH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCCCC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cCCCC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            99853  11  1    34778888899988876644 444444

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.14  E-value=8.4e-06  Score=72.84  Aligned_cols=96  Identities=20%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC---------CCcEEEEecCCccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------RSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~---------~~~v~~~~~t~d~~eal~~a   97 (256)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|.++   ....+.....         +..++.   +++++ +++++
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~~~   71 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDAA-ALGEQ   71 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCHH-HHCCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCHH-HcCCC
Confidence            4579999998 9999999999999998  999999742   1122222110         001111   23443 46899


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      |+||++...                ..+.++++.+..+. |+.+|+.+.|.+
T Consensus        72 D~Vilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           72 DVVIVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             SEEEECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CEEEEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            999998521                22456666776654 788888899985

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.13  E-value=1.1e-05  Score=70.79  Aligned_cols=91  Identities=20%  Similarity=0.329  Sum_probs=61.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      ++||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    ++.   .++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999998 9999999999999998  9999999843211  122211    222   346677888 99999996322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                                     ..++++++.+.... |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           12344446666554 5666665553

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.13  E-value=4.7e-06  Score=75.16  Aligned_cols=97  Identities=12%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc----------CCCcEEEEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------TRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~----------~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      +||+|||+ |.+|..++..|+..|+  +|.++|.++..  ...+.+..          .+..+..   ++++.++++++|
T Consensus        16 ~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~aD   87 (366)
T 1evy_A           16 NKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEE--VRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAE   87 (366)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHH--HHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHcCcccccccccccccceee---eCCHHHHHcCCC
Confidence            39999998 9999999999998887  99999987321  11122110          1112332   235567789999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHhC-C-CcEEEEecCCCC
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSA----IAKYC-P-NAIVNMISNPVN  149 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~----i~~~~-p-~~~iiv~tNPvd  149 (256)
                      +||++...                ..+.++++.    +..+. | +.+++.++|.++
T Consensus        88 vVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           88 IILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             SEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             EEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            99998521                113334444    44333 4 667888887544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.13  E-value=2.3e-05  Score=69.59  Aligned_cols=112  Identities=17%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc----C-----CCcEEEEecCCccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----T-----RSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~----~-----~~~v~~~~~t~d~~eal~~a   97 (256)
                      .++||+|||+ |.+|..++..|+..|+  +|.++ .+...  ...+....    .     +..+..   +++. ++++++
T Consensus        18 ~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~   87 (318)
T 3hwr_A           18 QGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSA---SSDP-SAVQGA   87 (318)
T ss_dssp             --CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEE---ESCG-GGGTTC
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCCC
Confidence            3579999998 9999999999999998  99999 65211  11122111    0     011221   2344 456899


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |+||++....                .+.++++.+..+. |+.+|+.++|.++.    - +.+...  +| +++++
T Consensus        88 D~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~----~-~~l~~~--~~-~~vl~  139 (318)
T 3hwr_A           88 DLVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVEN----A-DTLRSL--LE-QEVAA  139 (318)
T ss_dssp             SEEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSH----H-HHHHHH--CC-SEEEE
T ss_pred             CEEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCc----H-HHHHHH--cC-CcEEE
Confidence            9999985221                1355667777665 67888889999983    2 233333  66 67775

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.13  E-value=3.5e-06  Score=72.96  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC--CCEEEEe
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIP  103 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~--aDvVIi~  103 (256)
                      +++|||.|+||+|++|++++..|+..|..........   .....|+.+            ..++.+++++  +|+||++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEEC
Confidence            4678999999999999999999999885100000000   001112221            1123445555  9999999


Q ss_pred             cCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRK---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~---~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+....   ...+..+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~S  112 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCL  112 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEc
Confidence            986421   12345677889999999999999888754 455544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.12  E-value=3.9e-06  Score=72.52  Aligned_cols=100  Identities=14%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi~  103 (256)
                      |||.|+||+|++|+.++..|... |.  +|++++.+....  .++...    .++...++    .++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999999887 77  899998863211  112111    12222211    2456789999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++....        ...|+...+.+++.+++.+.. .+|++|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            875421        134677788899988887644 344443

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.12  E-value=5.4e-06  Score=73.36  Aligned_cols=113  Identities=19%  Similarity=0.087  Sum_probs=73.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--------chhHHHHHhcccCCCcEEEEecC----CccccccC-
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGN----DQLGQALE-   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--------~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~-   95 (256)
                      ++|.|+||+|++|++++..|+..|+  +|+++|...        ......++.... ...+..+.++    .++.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            5899999999999999999999997  999998742        112222232110 0122222211    12344555 


Q ss_pred             -CCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           96 -DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        96 -~aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                       ++|+||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  1234567788999999999998876543 455554

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.11  E-value=2.8e-06  Score=73.92  Aligned_cols=105  Identities=13%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      +++|.|+||+|++|++++..|+..| +  +|++++.+........+....    ++...++    .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~----~~~~~~D~~d~~~l~~~~~~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG----AEVVQGDQDDQVIMELALNGAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT----CEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC----CEEEEecCCCHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999877 7  999999874322222333211    2222111    245568899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +++.....      ....|....+.+++.+.+.+.. .++..|
T Consensus        79 ~a~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           79 VTNYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CCCHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             eCCCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            98642111      1245677788888888877643 455443

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.09  E-value=1.8e-05  Score=72.53  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=71.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-----hHHHHHhcc-------cCCCcEEEEecC----Cc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAADVGHI-------NTRSEVAGYMGN----DQ   89 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-----g~~~dl~~~-------~~~~~v~~~~~t----~d   89 (256)
                      ..+++|.|+||+|++|+.++..|...|.  +|++++.+...     .....+...       ....++..+.++    ..
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            3467999999999999999999987777  99999887421     111111110       001123333221    12


Q ss_pred             cccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        90 ~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +. ++.++|+||++|+..... .+..+.+..|+.....+++.+.+ . ...+|++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence            22 567999999999865322 33455678899999999999988 3 34555554

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.09  E-value=6.7e-06  Score=72.57  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC--CCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~--~aDvV  100 (256)
                      |||.|+||+|++|++++..|+.+|+  +|+++|...  .......+.... ...+....++ +   ++.++++  ++|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999998  999998642  111112222110 0112222211 1   2333444  59999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |++||.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999864211  1234456788999999999998877644 455454

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.08  E-value=8e-06  Score=71.22  Aligned_cols=65  Identities=11%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   .+++.+++++||+||++..
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----AER---AATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEcC
Confidence            69999998 9999999999999998  9999999843211  222211    222   3466788899999999863

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.08  E-value=1.4e-05  Score=69.50  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=62.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |++|||+|||+ |.+|..++..|...|+..+|+++|.+....  ..+.+.....  ..   +.++.++++++|+||++..
T Consensus         4 M~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp   75 (290)
T 3b1f_A            4 MEEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVP   75 (290)
T ss_dssp             GCCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSC
T ss_pred             cccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCC
Confidence            45689999998 999999999998774323899999873211  1222211110  11   2355567899999999853


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-C-PNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~-p~~~iiv~tNP  147 (256)
                      .                ....++++.+..+ . |+.+++.++|.
T Consensus        76 ~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 I----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             H----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             H----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence            1                1235566667665 4 67777666653

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.07  E-value=2.5e-06  Score=75.89  Aligned_cols=92  Identities=20%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHH---HHHhcccCCCcEEEEecC----CccccccC-
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVA---ADVGHINTRSEVAGYMGN----DQLGQALE-   95 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~---~dl~~~~~~~~v~~~~~t----~d~~eal~-   95 (256)
                      |.++||.|+||+|++|++++..|+..|+  +|++++++.  .....   .++...    .++...++    .++.++++ 
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~----~v~~~~~Dl~d~~~l~~~~~~   81 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK----GAIIVYGLINEQEAMEKILKE   81 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT----TCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC----CcEEEEeecCCHHHHHHHHhh
Confidence            4567999999999999999999999997  999998864  11111   122221    12222211    23556778 


Q ss_pred             -CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206           96 -DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus        96 -~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                       ++|+||++++..             |+...+.+++.+++.+
T Consensus        82 ~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           82 HEIDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             TTCCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCCCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence             999999998752             5555677888888876

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.07  E-value=1.9e-05  Score=71.24  Aligned_cols=114  Identities=16%  Similarity=0.052  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCch----------hHHHH-HhcccC---CCc---EEEEecC-C-
Q 025206           29 RKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP----------GVAAD-VGHINT---RSE---VAGYMGN-D-   88 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~----------g~~~d-l~~~~~---~~~---v~~~~~t-~-   88 (256)
                      |+|.|+||+|++|++++..|+ ..|+  +|+++|.....          ....+ +.+...   ...   +..+.++ . 
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            699999999999999999999 8998  99999876311          11111 111100   001   3333221 1 


Q ss_pred             --ccccccC--C-CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           89 --QLGQALE--D-SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        89 --d~~eal~--~-aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                        ++.++++  + +|+||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~S  143 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSS  143 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEEC
Confidence              2334555  5 99999999864311  1234567888999999999998877544 445454

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.07  E-value=1.3e-05  Score=68.82  Aligned_cols=93  Identities=16%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccE-EEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~e-V~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +|||+|||+ |.+|..++..|...|+  + |.++|.+...  ...+.+..   .+..   ..++.++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            479999998 9999999999988887  6 8999987321  11222210   1222   23556788999999998521


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                                      ....++++.+.+.. ++.+++..++-
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~  104 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGS  104 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCC
Confidence                            11355666776665 67788777763

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.06  E-value=3.1e-05  Score=67.40  Aligned_cols=92  Identities=21%  Similarity=0.338  Sum_probs=62.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +|||+|||++|.+|..++..|...|+  +|+++|++...  ...+.+..    +..   + +..+++++||+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc---C-CHHHHhcCCCEEEEcCCc-
Confidence            36999999779999999999999998  99999987321  11222211    111   1 345688999999998521 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                                     ..+.++++.+.... |+.+++..|+.
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~~  103 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDAA  103 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCSH
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCCC
Confidence                           11456667776665 57777666653

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.05  E-value=3.8e-06  Score=74.72  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-----CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCC---
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED---   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-----~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~---   96 (256)
                      |||.|+||+|++|++++..|+.+|     +  +|+++|.+.....   +.+    ..++...++    .++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999999888     6  9999998632111   111    122222211    134456777   


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                      +|+||++|+...   .+..+.+..|+.....+++.+.+.+
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~  109 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC  109 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence            999999998652   3466778899999999999998874

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.04  E-value=1e-05  Score=72.14  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----C---CcEEEEecCCccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----R---SEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----~---~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ++||+|||+ |.+|+.++..|+..|+  +|.++|.++.+  ...+.....    +   ..+..   ++++.+ ++++|+|
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDvV   84 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDIL   84 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCEE
Confidence            579999998 9999999999999998  99999986322  222222110    0   01222   235556 8899999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      |++...                ..+.++++.+..  ++.++|.++|.++
T Consensus        85 il~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           85 VIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            998531                113344444443  6778888888654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.04  E-value=1.1e-05  Score=70.87  Aligned_cols=68  Identities=16%  Similarity=0.047  Sum_probs=49.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+|||+|||+ |.+|..++..|+..|+  +|+++|+++..  ...+.+...  ..  .  ..++.+++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~--~~--~--~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGA--CG--A--AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC--SE--E--ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCC--cc--c--cCCHHHHHhcCCEEEEECC
Confidence            3579999998 9999999999999998  99999987421  222332221  11  1  2355678899999999864

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.04  E-value=3.5e-05  Score=66.48  Aligned_cols=118  Identities=20%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  ......++........+..+..+ ++   +.+++      
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  999999873  22222333322211223322211 12   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~~~iiv~tN  146 (256)
                       .+.|+||++||......   .+   ....+..|+..    .+.+.+.+.+... .+.||++|.
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence             37999999998653211   12   23345666655    6777888877653 467777764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.04  E-value=1.7e-05  Score=70.52  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccc-ccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-ALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~e-al~~aDvVIi~ag  105 (256)
                      ..+||+|||+ |.+|.+++..|...|+..+|+++|.++...  .........  ...   .+++.+ ++++||+||++..
T Consensus        32 ~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~--~~a~~~G~~--~~~---~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           32 SMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGII--DEG---TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             SCSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSC--SEE---ESCTTGGGGGCCSEEEECSC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHH--HHHHHCCCc--chh---cCCHHHHhhccCCEEEEeCC
Confidence            3479999998 999999999999998756899999874211  111111110  011   235567 7899999999853


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ..                .+.++++.+..+. |+++|+.++
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            21                1234455565554 677776555

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.03  E-value=5.5e-06  Score=69.52  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             hhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCC
Q 025206            9 VKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND   88 (256)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~   88 (256)
                      .++...|..+-+-.+....++||+|||+ |.+|..++..|...|+  +|+++|.+..  ...++.+..    ++.   . 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~g----~~~---~-   75 (215)
T 2vns_A            9 LISLHLVDSDSSLAKVPDEAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPSA----AQV---T-   75 (215)
T ss_dssp             --------------------CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBTT----SEE---E-
T ss_pred             cccceeecccccccCCCCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHcC----Cce---e-
Confidence            4445555544333323335679999997 9999999999999888  8999998632  122233221    222   1 


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ++.++++++|+||++....    . ..+.       . +    +....++.+++.++|+..
T Consensus        76 ~~~~~~~~~DvVi~av~~~----~-~~~v-------~-~----l~~~~~~~~vv~~s~g~~  119 (215)
T 2vns_A           76 FQEEAVSSPEVIFVAVFRE----H-YSSL-------C-S----LSDQLAGKILVDVSNPTE  119 (215)
T ss_dssp             EHHHHTTSCSEEEECSCGG----G-SGGG-------G-G----GHHHHTTCEEEECCCCCH
T ss_pred             cHHHHHhCCCEEEECCChH----H-HHHH-------H-H----HHHhcCCCEEEEeCCCcc
Confidence            4567889999999986421    1 0111       1 1    222236788988999875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.03  E-value=1.7e-05  Score=70.00  Aligned_cols=67  Identities=21%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .++||+|||. |.+|..++..|+..|+  +|+++|+++..  ...+.+..    ...   ..++.+++++||+||++..
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEeC
Confidence            4579999998 9999999999999998  99999987421  12222211    121   3466788899999999863

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.03  E-value=5.2e-06  Score=74.53  Aligned_cols=115  Identities=10%  Similarity=-0.022  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhccc---CCCcEEEEecC-C---ccccccCC--
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYMGN-D---QLGQALED--   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~---~~~~v~~~~~t-~---d~~eal~~--   96 (256)
                      ++|.|+||+|++|++++..|+..|.  +|+++|.+...   ....++....   ....+..+.++ .   ++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  99999876311   0111111000   01123333221 1   23344554  


Q ss_pred             CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC--cEEEEec
Q 025206           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPN--AIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~--~~iiv~t  145 (256)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+....  ..+|++|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            69999999864311  1234456778888899999998887641  4566655

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.02  E-value=5.4e-05  Score=65.48  Aligned_cols=97  Identities=14%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~ag~  106 (256)
                      ++||+|||+ |.+|..++..|...|+..+|+++|.+....  ..+......  ...   ++++.++++ +||+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~--~~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGII--DEG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSC--SEE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCCCc--ccc---cCCHHHHhcCCCCEEEEcCCH
Confidence            368999998 999999999999888644799999873211  112221111  111   235567888 99999998521


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                                      ....++++.+..+. |+++|+.++|..
T Consensus        73 ----------------~~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 ----------------RTFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ----------------HHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ----------------HHHHHHHHHHHhhCCCCcEEEECCCCc
Confidence                            11234445555544 677777777643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.02  E-value=1.3e-05  Score=71.55  Aligned_cols=98  Identities=19%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-c-------CCCcEEEEecCCccccccCCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-N-------TRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-~-------~~~~v~~~~~t~d~~eal~~a   97 (256)
                      |++|||+|||+ |.+|..++..|...|+  +|.++|.++...  ..+.+. .       .....+....++++.++++++
T Consensus         2 m~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (359)
T 1bg6_A            2 IESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRI--KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA   76 (359)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred             CCcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHhcCCeEEeccccccccccceecCCHHHHHhcC
Confidence            45689999998 9999999999999998  999999873211  112111 0       000000000123566778999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~  144 (256)
                      |+||++.....                ..++++.+..+. ++.+++..
T Consensus        77 D~vi~~v~~~~----------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           77 DVILIVVPAIH----------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             SEEEECSCGGG----------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             CEEEEeCCchH----------------HHHHHHHHHHhCCCCCEEEEc
Confidence            99999964321                134556666655 56656555

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.02  E-value=9.7e-06  Score=73.51  Aligned_cols=95  Identities=15%  Similarity=0.223  Sum_probs=63.1

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCC---CEE
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS---DVV  100 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a---DvV  100 (256)
                      .++++|||+|||. |.+|..++..|+..|+  +|+++|++..  ...++....    +.   ..+++.++++++   |+|
T Consensus        18 ~Mm~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvV   85 (358)
T 4e21_A           18 LYFQSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVV   85 (358)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEE
T ss_pred             hhhcCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEE
Confidence            3456689999998 9999999999999998  9999998732  222333322    11   134566777778   999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      |++...+                .+.++++.+.... |+.+||..||
T Consensus        86 i~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st  116 (358)
T 4e21_A           86 WLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGN  116 (358)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSS
T ss_pred             EEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCC
Confidence            9985321                1344455666655 6777777765

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.02  E-value=2.2e-06  Score=74.67  Aligned_cols=166  Identities=13%  Similarity=0.082  Sum_probs=91.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccccC--CCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE--DSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal~--~aDvVIi~  103 (256)
                      |||.|+||+|++|++++..|+.+  |+  +|+++|.+.......  ....   .+..-. ...++.++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSGP---FEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSSC---EEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCCc---eEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999999987  77  899999864221111  1100   011000 0113445566  89999999


Q ss_pred             cCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH-HHHHHhCCCCCCcEEEEeechHHHH
Q 025206          104 AGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-EVFKKAGTYNEKKLFGVTTLDVVRA  181 (256)
Q Consensus       104 ag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~-~~~~~~~~~~~~kviG~t~lds~R~  181 (256)
                      |+..... ..+..+.+..|+.....+++.+.+.... .+|++|...-. ..-.. ....+.....+....|.+.....++
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~-~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  153 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVF-GPTTPKENTPQYTIMEPSTVYGISKQAGERW  153 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGC-CTTSCSSSBCSSCBCCCCSHHHHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHh-CCCCCCCCccccCcCCCCchhHHHHHHHHHH
Confidence            9864211 1234567788999999999998876543 45555421100 00000 0000000011122222233333344


Q ss_pred             HHHHHHHcCCCCCcee-EEEEeC
Q 025206          182 KTFYAGKANVNVAEVN-VPVVGG  203 (256)
Q Consensus       182 ~~~la~~l~v~~~~v~-~~v~G~  203 (256)
                      -..+++..|++..-++ ..++|.
T Consensus       154 ~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          154 CEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHhcCCcEEEEeCCeEecC
Confidence            4455566677776777 668884

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.02  E-value=0.00011  Score=62.13  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=81.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|+++|.+.  +.....++....  .++..+..+ +|   +.+.+      
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            445889999999999999999999998  899999873  222233333211  122222211 11   22222      


Q ss_pred             -CCCCEEEEecCCCC--CC----CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHH
Q 025206           95 -EDSDVVIIPAGVPR--KP----GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (256)
Q Consensus        95 -~~aDvVIi~ag~~~--~~----g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~  160 (256)
                       ...|++|++||...  ..    ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|....           
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~-----------  151 (253)
T 3qiv_A           84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAA-----------  151 (253)
T ss_dssp             HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC--------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccc-----------
Confidence             38999999998731  10    112   23456667655    566666666554 466777775332           


Q ss_pred             HhCCCCCCcEEEEeechHHHHHHHHHHHcC
Q 025206          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKAN  190 (256)
Q Consensus       161 ~~~~~~~~kviG~t~lds~R~~~~la~~l~  190 (256)
                          ++....++.+..-...+-+.++..++
T Consensus       152 ----~~~~~~Y~asK~a~~~~~~~la~e~~  177 (253)
T 3qiv_A          152 ----WLYSNYYGLAKVGINGLTQQLSRELG  177 (253)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTT
T ss_pred             ----cCCCchhHHHHHHHHHHHHHHHHHHh
Confidence                11222345543334456677788774

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.01  E-value=2.3e-05  Score=76.10  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc----cccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~eal~~aDvV  100 (256)
                      ++++|.|+||+|++|++++..|+.. |+  +|+++|.+....  .++..   ...++...++ .+    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            5679999999999999999999987 77  999999863211  01111   1123333221 11    33456789999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++|+.....  ..+..+.+..|+.....+++.+.+..  ..+|++|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9999865321  12345667788888999999988876  46666653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.00  E-value=5.6e-05  Score=65.27  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+|||+ |.+|..++..|...|+  +|+++|.+....  ..+.+.....  ..   ..++.++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECCH--
Confidence            58999998 9999999999999998  999999873221  1222211111  11   2355667 999999998521  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                                    ..+.++++.+..+. |+.+++.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          12455666776655 6777776654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.00  E-value=8.7e-06  Score=70.99  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   .+++.+++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEcC
Confidence            468999998 9999999999999998  9999999843211  122211    221   3466788899999999863

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.99  E-value=2.7e-06  Score=72.61  Aligned_cols=101  Identities=19%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccccCC--CCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALED--SDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal~~--aDvVIi~ag  105 (256)
                      |||.|+||+|++|++++..|+. |+  +|++++.+....     ..      +..-. ...++.+++++  +|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~~------~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----GG------YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----TC------EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----CC------ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999984 65  899998864210     00      11000 01133445665  999999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            65321  123456678899999999999887643  566555

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.99  E-value=6.2e-05  Score=64.66  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-CccccccCCCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~~eal~~aDvVIi~ag~  106 (256)
                      +|||.|+|| |++|++++..|+.+|+  +|+.++.+.....  .+...    .++.+.++ .++.  ++++|+||++|+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            369999998 9999999999999998  9999998743221  22221    23333222 3433  8899999999985


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ....  .         +..+.+++.+++.+ .-..+|.+|
T Consensus        74 ~~~~--~---------~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           74 DSGG--D---------PVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             BTTB--C---------HHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             cccc--c---------HHHHHHHHHHHhhcCCceEEEEee
Confidence            4321  1         12345666666632 223455554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.99  E-value=5e-06  Score=70.09  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVI  101 (256)
                      .+++|.|+||+|++|+.++..|+..| .  +|++++++.....  ++.    ...+..+.+    ..++.++++++|+||
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~--~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vv   93 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIH--KPY----PTNSQIIMGDVLNHAALKQAMQGQDIVY   93 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSC--SSC----CTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhc--ccc----cCCcEEEEecCCCHHHHHHHhcCCCEEE
Confidence            45689999999999999999999998 6  9999998732100  011    112322221    124556789999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +++|..      ..+      ...+.+++.+++.... .||++|.
T Consensus        94 ~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           94 ANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            998742      111      1245677777766543 5666654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.98  E-value=5.9e-05  Score=63.60  Aligned_cols=116  Identities=13%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++...   ..+..+..+ ++   +.+++      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  9999998732  2222222211   123332211 11   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                       ...|+||++||......   .+   ....+..|+.    ..+.+.+.+.+....+.||++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             25899999998653211   12   2345666765    444555555444332567777643

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.96  E-value=1e-05  Score=69.86  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCC-c--EEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS-E--VAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~-~--v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.+|+.++..|...|+  +|.++|.++....  ++....... .  .+..  ..+ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            58999998 9999999999999998  9999998742110  122111000 0  1111  123 357789999999963


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~  150 (256)
                      ..        +        +.++++.+..+. |+.+++..+|..+.
T Consensus        73 ~~--------~--------~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           73 AW--------Q--------VSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             GG--------G--------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             HH--------h--------HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            22        0        244556666554 67788888998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=6.3e-05  Score=60.86  Aligned_cols=136  Identities=12%  Similarity=0.076  Sum_probs=77.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC--Cccccc--cCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQA--LEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~ea--l~~aDvVIi  102 (256)
                      .++|.|+|+ |.+|..++..|... |+  +|+++|.++..  ...+...... .+.. ..+  ..+.++  ++++|+||+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g~~-~~~g-d~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEGRN-VISG-DATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTTCC-EEEC-CTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCCCC-EEEc-CCCCHHHHHhccCCCCCCEEEE
Confidence            468999998 99999999999988 88  99999987422  1222221111 0110 001  113344  789999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      +.+..           ..|.    .++..+++.+|+..++..+|-.+     ..+.++..|   .+.++.-...-..++.
T Consensus       112 ~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~-----~~~~l~~~G---~~~vi~p~~~~a~~l~  168 (183)
T 3c85_A          112 AMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPD-----QLEGLLESG---VDAAFNIYSEAGSGFA  168 (183)
T ss_dssp             CCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHH-----HHHHHHHHT---CSEEEEHHHHHHHHHH
T ss_pred             eCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHcC---CCEEEchHHHHHHHHH
Confidence            85421           1232    34445666677877776665332     123455554   3455544333233444


Q ss_pred             HHHHHHcCCCC
Q 025206          183 TFYAGKANVNV  193 (256)
Q Consensus       183 ~~la~~l~v~~  193 (256)
                      ..+.+.++.+.
T Consensus       169 ~~~~~~~~~~~  179 (183)
T 3c85_A          169 RHVCKQLEPQF  179 (183)
T ss_dssp             HHHHHHHCCCC
T ss_pred             HHHHHhcCCcc
Confidence            55555555443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.96  E-value=2.9e-05  Score=67.75  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|||+|||+ |.+|..++..|...|+  +|+++|.+...  ...+.+..    +..   ..++.++++++|+||++..
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQG----AQA---CENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            4579999998 9999999999998888  99999986321  22233221    222   2355677889999999853

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.96  E-value=2.3e-05  Score=73.59  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh-----HHHHHhcc-------cCCCcEEEEecC----Ccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHI-------NTRSEVAGYMGN----DQL   90 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g-----~~~dl~~~-------~~~~~v~~~~~t----~d~   90 (256)
                      .+++|.|+||+|++|++++..|...|.  +|+++++.....     ....+...       ....++..+.++    ..+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            467999999999999999999977776  999998874211     11111110       011234444321    122


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      . +..++|+||++|+.... ..+..++...|+...+.+++.+.+ .. ..++.+|
T Consensus       227 ~-~~~~~D~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iS  277 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVS  277 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEE
T ss_pred             C-CccCCCEEEECCceecC-CCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeC
Confidence            2 56799999999986531 223345567799999999999887 32 3455454

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.95  E-value=2.1e-05  Score=67.14  Aligned_cols=96  Identities=13%  Similarity=0.272  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC--ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~--~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+|||+ |.+|..++..|...|+  ..+|+++|+++..  ..++.+..   .+..   ..+..+++++||+||++. .
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-~   72 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-K   72 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-C
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-C
Confidence            68999998 9999999999998886  3489999987422  12222110   1221   335567889999999996 2


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      |   .            .+.++++.+..+. |+.++|..++.+.
T Consensus        73 ~---~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           73 P---D------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             T---T------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             H---H------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            2   1            1445556666655 5667665666665

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.95  E-value=4e-05  Score=67.73  Aligned_cols=114  Identities=11%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc-----CCCcEEE--EecCCccccccCCCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRSEVAG--YMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~-----~~~~v~~--~~~t~d~~eal~~aDvVI  101 (256)
                      |||+|||+ |.+|..++..|...|+  +|.++|.++.    ..+....     .......  ...+++. ++++++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY----EAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH----HHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH----HHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            69999998 9999999999999998  9999998652    1122111     0011110  0012243 4578999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++.-..    .            +.++++.++.+- |+..|+.+.|-++.    . +.+++.  +|.++|++-
T Consensus        75 lavk~~----~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~----~-~~l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           75 VGLKTF----A------------NSRYEELIRPLVEEGTQILTLQNGLGN----E-EALATL--FGAERIIGG  124 (312)
T ss_dssp             ECCCGG----G------------GGGHHHHHGGGCCTTCEEEECCSSSSH----H-HHHHHH--TCGGGEEEE
T ss_pred             EecCCC----C------------cHHHHHHHHhhcCCCCEEEEecCCCCc----H-HHHHHH--CCCCcEEEE
Confidence            985211    1            234556666655 78888888999873    2 233333  666777654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.95  E-value=1.2e-05  Score=70.09  Aligned_cols=97  Identities=15%  Similarity=0.015  Sum_probs=62.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC----CccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvV  100 (256)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..   ......+.... ...++...++    .++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            56899999999999999999999997  8999988631   11211121100 0112222211    2456788999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                      |++++.....         .|....+.+++.+.+.+
T Consensus        81 i~~a~~~~~~---------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVLS---------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccch---------hhHHHHHHHHHHHHhcC
Confidence            9998764211         13444566777777765

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.94  E-value=1.5e-06  Score=78.21  Aligned_cols=115  Identities=10%  Similarity=-0.064  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhccc--CCC-cEEEEecC-C---ccccccCC--
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN--TRS-EVAGYMGN-D---QLGQALED--   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~--~~~-~v~~~~~t-~---d~~eal~~--   96 (256)
                      ++|.|+||+|++|++++..|+..|+  +|+++|.+...   .....+....  ... .+..+.++ .   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            4899999999999999999999997  99999876311   0000110000  000 23332221 1   23345554  


Q ss_pred             CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC----CcEEEEec
Q 025206           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP----NAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p----~~~iiv~t  145 (256)
                      .|+||++||.....  ..+....+..|+.....+++.+.+...    .+.+|++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            69999999864311  123445667788888888888877642    34666665

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.93  E-value=1.5e-05  Score=68.37  Aligned_cols=97  Identities=11%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEEe
Q 025206           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi~  103 (256)
                      ||.|+||+|++|++++..|+.+  |+  +|++++.+.....  ++.+..    ++...+    ..++.++++++|+||++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~----~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG----ITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT----CEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC----CeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            5899999999999999999988  76  8999998742211  122111    121111    12455688999999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++...          ..|+...+.+++.+.+.... .+|++|
T Consensus        73 a~~~~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           73 SSSEV----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             C------------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             CCCCc----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            87531          13566777888888877644 344443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.93  E-value=0.00011  Score=62.39  Aligned_cols=116  Identities=21%  Similarity=0.293  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccE-EEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc----ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~e-V~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  + |+++|.+.......++.+.....++..+..+ ++    +.+++      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            346899999999999999999999997  6 8999987422222333322111123322211 11    11122      


Q ss_pred             -CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh----C--CCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY----C--PNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~----~--p~~~iiv~tN  146 (256)
                       ...|++|++||...  .++....+..|+.....+.+.+.+.    .  +.+.||++|.
T Consensus        82 ~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           82 LKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             HSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence             37899999998642  2344556777766555555554432    2  2467777764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.93  E-value=2.1e-05  Score=69.66  Aligned_cols=71  Identities=15%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ++|||+|||+ |.+|..++..|+..|+ .+|+++|++........+.+..    +..   .+++.+++++||+||++...
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp~   93 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVTA   93 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSCT
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecCc
Confidence            4579999998 9999999999998885 5899999862111112222221    221   33566788999999998643

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.92  E-value=0.00012  Score=62.74  Aligned_cols=116  Identities=20%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+..  .....++.+......+..+..+ +|   +.+++      
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999998  9999998732  2222233221101123322211 12   22222      


Q ss_pred             -CCCCEEEEecCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g~~r~d~~~~N~~----i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                       ...|++|++||...  .++....+..|+.    ..+.+.+.+.+..  +.+.||++|.
T Consensus        84 ~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           84 FGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             HSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             35799999998753  2234455666755    5566777776543  2467777764

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.92  E-value=6e-05  Score=67.62  Aligned_cols=104  Identities=19%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-----CccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~eal~~aDvVIi  102 (256)
                      +++|.|+||+|++|++++..|+.+|+  +|++++.+.......++...   ..+....++     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999887  89999887432222233321   123322222     135567899999998


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      +++...   .      ..|... +.+++.+.+.+ .. .+|.+|-.
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            875431   1      124444 77888887776 43 56666644

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.92  E-value=2.4e-05  Score=69.14  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC--CCchhHHHHHhcccC----C---CcEEEEecCC--ccccccCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINT----R---SEVAGYMGND--QLGQALEDS   97 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~--~~~~g~~~dl~~~~~----~---~~v~~~~~t~--d~~eal~~a   97 (256)
                      |||+|||+ |.+|+.++..|...|+  +|.++|.  +..  ....+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            58999998 9999999999998898  9999998  532  1222332111    0   11222   22  555678999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      |+||++...+                .+.++++.+....|+.+++.++|.+
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999996322                1234445555523677888888876

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.91  E-value=3.3e-05  Score=68.65  Aligned_cols=66  Identities=23%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCC-----chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~-----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+|||+ |.+|..++..|+..| +  +|+++|++.     .......+....    +   . ++++.+++++||+||+
T Consensus        25 m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~---~-~~s~~e~~~~aDvVi~   93 (317)
T 4ezb_A           25 TTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V---E-PLDDVAGIACADVVLS   93 (317)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C---E-EESSGGGGGGCSEEEE
T ss_pred             CeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C---C-CCCHHHHHhcCCEEEE
Confidence            69999998 999999999999999 7  999999873     112222233222    1   1 1144678899999999


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +..
T Consensus        94 avp   96 (317)
T 4ezb_A           94 LVV   96 (317)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            964

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.91  E-value=3.8e-05  Score=72.19  Aligned_cols=101  Identities=12%  Similarity=0.176  Sum_probs=65.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC---CCEEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVII  102 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~---aDvVIi  102 (256)
                      +.++||+|||+ |.+|.+++..|+..|+  +|.++|++...  ..++........+..   ++++++++++   +|+||+
T Consensus        13 ~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           13 MSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             --CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             cCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEE
Confidence            45679999998 9999999999999998  99999987322  222222100012332   3466666666   999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      +...+    .           .++++++.+.... |+.+||..+|...
T Consensus        85 ~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           85 MVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             CSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             ECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            96332    1           1344556666655 6778888888653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.91  E-value=4.1e-05  Score=72.04  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhccc-CCCcEEEEecCCcccccc---CCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQAL---EDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~-~~~~v~~~~~t~d~~eal---~~aDvVIi  102 (256)
                      .++||+|||+ |.+|.+++..|+..|+  +|+++|++...  ..++.+.. ....+..   +.++++++   +++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            5679999998 9999999999999998  99999997532  22222211 1112221   23445544   46999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      +...+               +.++++++.+.... |+.+||..+|.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~  105 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNS  105 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence            86332               12344556666655 67788777764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.90  E-value=3.7e-05  Score=67.94  Aligned_cols=114  Identities=11%  Similarity=0.132  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |.+|..++..|. .|+  +|.+++.++..  ...+.....    +........+.+ .++..++|+||++.
T Consensus         3 mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~--~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQ--AAAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHH--HHHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEEe
Confidence            79999998 999999999999 887  99999986321  111221110    000000000001 24568999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      -    +.            .+.++++.++...++. |+.+.|-++.     .+.++..  +|.++|++-
T Consensus        76 K----~~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~-----~e~l~~~--~~~~~vl~g  120 (307)
T 3ego_A           76 K----QH------------QLQSVFSSLERIGKTN-ILFLQNGMGH-----IHDLKDW--HVGHSIYVG  120 (307)
T ss_dssp             C----GG------------GHHHHHHHTTSSCCCE-EEECCSSSHH-----HHHHHTC--CCSCEEEEE
T ss_pred             C----HH------------HHHHHHHHhhcCCCCe-EEEecCCccH-----HHHHHHh--CCCCcEEEE
Confidence            2    11            1345556666555666 7888898872     2344433  688888765

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.90  E-value=1.9e-05  Score=77.03  Aligned_cols=115  Identities=19%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----CccccccC--CCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aD   98 (256)
                      ++++|.|+||+|++|++++..|+.+|.  +|+++|...  ......++.... ...+..+.++    .++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999999998  999998763  111112222110 0112222111    12344566  899


Q ss_pred             EEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        99 vVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +||++|+.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999864211  1123456788999999999999887644 444454

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.90  E-value=3.2e-06  Score=69.30  Aligned_cols=104  Identities=13%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc---CCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL---EDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal---~~aDvVIi~  103 (256)
                      ++|||.|+||+|++|+.++..|+ +|.  +|+++|.+.. ....|+.+.            .++++++   ...|+||++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNI------------DSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCH------------HHHHHHHHHHCCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCH------------HHHHHHHHHhCCCCEEEEC
Confidence            34689999999999999999999 887  9999998632 001122211            1122233   358999999


Q ss_pred             cCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecC
Q 025206          104 AGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tN  146 (256)
                      ||......   .+.   ...+..|+.....+++.+.+.-. .+.++++|.
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            98643211   122   23456777777777777766531 256666654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.90  E-value=1.1e-05  Score=70.82  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-c---hhHHH---HHhcccCCCcEEEEecC----CccccccCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T---PGVAA---DVGHINTRSEVAGYMGN----DQLGQALED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~---~g~~~---dl~~~~~~~~v~~~~~t----~d~~eal~~   96 (256)
                      +++|.|+||+|++|++++..|+..|+  +|++++++. .   .....   ++....    ++...++    .++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~----v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMG----VTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTT----CEEEECCTTCHHHHHHHHTT
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCC----cEEEEecCCCHHHHHHHHcC
Confidence            46899999999999999999999997  899998864 1   11111   122211    2222211    245678899


Q ss_pred             CCEEEEecCCC
Q 025206           97 SDVVIIPAGVP  107 (256)
Q Consensus        97 aDvVIi~ag~~  107 (256)
                      +|+||++++..
T Consensus        78 ~d~vi~~a~~~   88 (321)
T 3c1o_A           78 VDIVISALPFP   88 (321)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEECCCcc
Confidence            99999998753

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.90  E-value=5e-06  Score=72.62  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC--CCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccC--CCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALE--DSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~--~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~--~aDvVIi~a  104 (256)
                      ||.|+||+|++|++++..|+..  |.  +|+++|.......     ...   -+..- ....++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GIK---FITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TCC---EEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cce---EEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999999887  66  8999987632110     000   01100 00113344565  899999999


Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          105 GVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       105 g~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +..... ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  111 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPS  111 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEec
Confidence            864211 1234566788999999999999876544 455454

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.89  E-value=1.5e-05  Score=69.17  Aligned_cols=74  Identities=22%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-------chhH-HHHHhcccCCCcEEEEecC----CccccccC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGV-AADVGHINTRSEVAGYMGN----DQLGQALE   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-------~~g~-~~dl~~~~~~~~v~~~~~t----~d~~eal~   95 (256)
                      ++||.|+||+|++|++++..|+..|+  +|++++++.       .+.. ..++.+..    ++...++    .++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~----v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLG----VILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTT----CEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCC----CEEEEeCCCCHHHHHHHHh
Confidence            46899999999999999999999887  899998864       1111 11222211    2222211    24567889


Q ss_pred             CCCEEEEecCCC
Q 025206           96 DSDVVIIPAGVP  107 (256)
Q Consensus        96 ~aDvVIi~ag~~  107 (256)
                      ++|+||++++..
T Consensus        76 ~~d~vi~~a~~~   87 (307)
T 2gas_A           76 QVDIVICAAGRL   87 (307)
T ss_dssp             TCSEEEECSSSS
T ss_pred             CCCEEEECCccc
Confidence            999999998754

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.89  E-value=4e-05  Score=66.33  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      ||||+|||+ |.+|..++..|.. |+  +|+++|++....  ..+.+..    +...  +  +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~--~~~~~~g----~~~~--~--~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKA--LRHQEEF----GSEA--V--PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHH--HHHHHHH----CCEE--C--CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHHCC----Cccc--C--HHHHHhCCCEEEEeCCCh
Confidence            368999998 9999999999998 87  899999874221  1122111    1111  1  456788999999986322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                                     ..++++++.+.+.. |+.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11233445555444 566777667643

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.89  E-value=1.8e-05  Score=72.60  Aligned_cols=100  Identities=17%  Similarity=0.293  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC------ccEEEEEeCCCc---hhHHHHHh--ccc--------CCCcEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL------VSRLALYDIANT---PGVAADVG--HIN--------TRSEVAGYMGN   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~------~~eV~LiD~~~~---~g~~~dl~--~~~--------~~~~v~~~~~t   87 (256)
                      +|.||+|||| |.-|+++|..|+.+++      ..+|.|+..++.   +.....++  |..        ++..+..   +
T Consensus        33 ~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t  108 (391)
T 4fgw_A           33 KPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---N  108 (391)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---E
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---e
Confidence            5779999998 9999999999987653      126899866521   11222232  221        2334553   5


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      +|+.+++++||+||++.  |              ...++++++++..+- ++..+|.++-
T Consensus       109 ~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~K  152 (391)
T 4fgw_A          109 PDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCLK  152 (391)
T ss_dssp             SCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECCC
T ss_pred             CCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEecc
Confidence            68889999999999984  2              233677788887766 5667776654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.89  E-value=2.9e-05  Score=66.00  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~----   95 (256)
                      +.++|.|+||+|++|..++..|+. .|.  +|++++.+.  ......++....  .++..+..+ +   ++.++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999 898  999999873  222233333221  122222211 1   2222333    


Q ss_pred             ---CCCEEEEecCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           96 ---DSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~~g~------~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                         ..|+||++||.......      +....+..|+.....+.+.+.++. +.+.||++|.
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               78999999987532211      123456778888888888887664 3457777764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.88  E-value=0.00014  Score=55.52  Aligned_cols=70  Identities=21%  Similarity=0.283  Sum_probs=44.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc-cccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-QALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-eal~~aDvVIi  102 (256)
                      .|||+|+|+ |.+|+.++..|...|+  +|+++|.+...  ...+.+.. .  +..+.++ .+   +. ..++++|+||+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-D--ALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-S--SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-C--cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            479999998 9999999999999887  99999987321  12222110 0  1111111 11   11 23689999999


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +.+
T Consensus        76 ~~~   78 (140)
T 1lss_A           76 VTG   78 (140)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            963

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.87  E-value=3.1e-05  Score=67.52  Aligned_cols=65  Identities=23%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.+|..++..|...|+  +|.++|.+...  ...+.+..    +..   ..++.++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999999888  99999987322  12222211    221   3356677889999999964

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.87  E-value=2e-05  Score=60.51  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=58.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cccc-cCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-LEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-l~~aDvVIi  102 (256)
                      +++|.|+|+ |.+|..++..|...|.  +|+++|.+..  ....+.+..    .....++ .+   +.++ ++++|+||+
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~~----~~~~~~d~~~~~~l~~~~~~~~d~vi~   76 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA----THAVIANATEENELLSLGIRNFEYVIV   76 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTTC----SEEEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhC----CEEEEeCCCCHHHHHhcCCCCCCEEEE
Confidence            457999998 9999999999999887  8999998631  111122111    1111111 11   2232 678999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      +.+.+          ...|..    ++..+++.+|+.++...+||..
T Consensus        77 ~~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           77 AIGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            97542          122332    3444555677644444455543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.86  E-value=5.7e-05  Score=64.04  Aligned_cols=104  Identities=16%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh---HHHHHhcccCCCcEEEEecCCcccccc----CCCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~eal----~~aDvVI  101 (256)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.|++....   ...|+.+..            ++++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEE
Confidence            4699999999999999999999998  999999873211   223333311            112222    4569999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNP  147 (256)
                      ++||..... ......+..|+.....+.+.+.++   ...+.||++|..
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            999975412 224556777766555555554432   223677777653

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.85  E-value=4.4e-05  Score=64.13  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccccccC---CCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE---DSD   98 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~---~aD   98 (256)
                      ++.++|.|+||+|++|.+++..|+.+|.  +|+++|.+....  .++.+...  .++.+..+ .   ++.++++   ..|
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDL--VSLAKECP--GIEPVCVDLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhcc--CCCcEEecCCCHHHHHHHHHHcCCCC
Confidence            3456899999999999999999999998  999999873211  11111000  11111111 1   2233333   579


Q ss_pred             EEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN  146 (256)
                      +||++||......   .+   ....+..|+.....+.+.    +.+....+.+|++|.
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            9999998653211   12   233456676654444444    443343466777764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.84  E-value=5.3e-05  Score=69.91  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCc---cccc-cCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~ea-l~~aDvVIi~  103 (256)
                      .++|.|+|. |.+|+.++..|...|+  +|+++|.+...  +..+....... +.  ...++   +.++ +++||+||++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~~v-i~--GDat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGMKV-FY--GDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTCCC-EE--SCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCCeE-EE--cCCCCHHHHHhcCCCccCEEEEC
Confidence            468999998 9999999999999998  99999998421  12222222111 11  11112   2233 7899999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t-NPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~  182 (256)
                      .+..           ..|    ..++..+++.+|+..||.-+ +|..      .+.++..|   .+.||--+..-+.++-
T Consensus        76 ~~~~-----------~~n----~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~G---ad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           76 IDDP-----------QTN----LQLTEMVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKTG  131 (413)
T ss_dssp             CSSH-----------HHH----HHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHTT---CSSCEETTHHHHHHHH
T ss_pred             CCCh-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEECccHHHHHHHH
Confidence            5321           223    34556667778986665555 4543      23455555   4567665555566777


Q ss_pred             HHHHHHcCCCCCce
Q 025206          183 TFYAGKANVNVAEV  196 (256)
Q Consensus       183 ~~la~~l~v~~~~v  196 (256)
                      ..+-..+|+++..+
T Consensus       132 ~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          132 RLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHTTCCHHHH
T ss_pred             HHHHHHcCCCHHHH
Confidence            77778889988876

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.83  E-value=5.3e-05  Score=64.28  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|.+.  ......++....  .++..+..+ +   ++.+++      
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999873  222223333211  123322211 1   222233      


Q ss_pred             -CCCCEEEEecCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~----g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                       ...|+||++||.....    ..+.   ...+..|+.....+.+.+.++   ...+.++++|.
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence             3789999999865311    1122   344566765555555544432   13456666664

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.83  E-value=1.2e-05  Score=59.70  Aligned_cols=71  Identities=27%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEe--cCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~eal~~aDvVIi~a  104 (256)
                      ++||+|+|+ |++|+.++..|...| .  +|+++|.+....  ..+.+...  ......  ...++.+.++++|+||+++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~--~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAAL--AVLNRMGV--ATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHH--HHHHTTTC--EEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHH--HHHHhCCC--cEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            468999999 999999999999998 5  899999874221  11221111  111000  0123456788999999997


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.82  E-value=9.8e-05  Score=62.75  Aligned_cols=113  Identities=17%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++.     .++..+..+ +   ++.++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998742  22222221     122222211 1   2233333     


Q ss_pred             --CCCEEEEecCCCCCCC---------CC---HHHHHHHHHHHHHHHHHHHHHhC---------CCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---------MT---RDDLFNINAGIVKDLCSAIAKYC---------PNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---------~~---r~d~~~~N~~i~~~i~~~i~~~~---------p~~~iiv~tN  146 (256)
                        ..|++|++||......         .+   ....+..|+.....+.+.+.++-         ..+.||++|.
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence              8999999998653211         12   23345667655555555554431         3456776663

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.82  E-value=0.00018  Score=66.79  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC----------------CCcEEEEecCCccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG   91 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~   91 (256)
                      ..|+.|||. |+||.++|..|+..|+  +|+.+|+++.  .+..|.....                ..+++.   +++  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            469999998 9999999999999999  9999999842  1222332110                122432   333  


Q ss_pred             cccCCCCEEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCC
Q 025206           92 QALEDSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVN  149 (256)
Q Consensus        92 eal~~aDvVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~-tNPvd  149 (256)
                        +++||+||++.++|..... ...|     +..+...++.|.++- |..++|.- |-|.+
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~~~D-----l~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYRSCD-----ISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSCBBC-----CHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             --hhhCCEEEEEeCCCccccccCCcc-----HHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence              4689999999998864321 1111     333455556666655 44444433 23444

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.81  E-value=2.7e-05  Score=67.70  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|||+|||+ |.+|..++..|...|+  +|+++| +.....  .+.+..    +..   ..++.++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~~---~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AVN---VETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CBC---CSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Ccc---cCCHHHHHhcCCEEEEECC
Confidence            3579999998 9999999999999888  999999 742211  122211    111   2355677889999999863

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.81  E-value=0.00023  Score=60.75  Aligned_cols=113  Identities=18%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.|.+.  +.....++..     .+..+..+ +   ++.++++     
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  2222222311     12211111 1   1222333     


Q ss_pred             --CCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        +.|++|++||......   .+   ....+..|+.    ..+.+.+.+.+..+.+.||++|.
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  142 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS  142 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence              8999999999753211   12   2334556654    44455555555555677877764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.81  E-value=4.9e-05  Score=66.55  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcC-----C-CccEEEEEeCCCchhHHHHHhc-ccCC-----C-----cEEEEecCCcc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLN-----P-LVSRLALYDIANTPGVAADVGH-INTR-----S-----EVAGYMGNDQL   90 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~-----~-~~~eV~LiD~~~~~g~~~dl~~-~~~~-----~-----~v~~~~~t~d~   90 (256)
                      +|||+|||+ |.+|..++..|...     | +  +|+++|. .  .....+.+ ....     .     +++.   +++ 
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-   77 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TDN-   77 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ESC-
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ecC-
Confidence            479999998 99999999999887     7 7  9999987 3  22223332 1110     0     0111   123 


Q ss_pred             ccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        91 ~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                      .++++++|+||++.....                +.++++.+..+- |+.+||.++|..+
T Consensus        78 ~~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~  121 (317)
T 2qyt_A           78 PAEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGAD  121 (317)
T ss_dssp             HHHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSS
T ss_pred             ccccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCC
Confidence            345789999999964321                234555665554 5677777788776

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.81  E-value=4.1e-05  Score=67.43  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|||+ |.+|..++..|...|+  +|.++|.+.....  .+.+..    +..   ..++.++++++|+||++..
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeCC
Confidence            479999998 9999999999999888  8999998742211  122211    221   2355677889999999863

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.81  E-value=0.00016  Score=55.79  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-ccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-ALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-al~~aDvVIi  102 (256)
                      +++|.|+|+ |.+|+.++..|...|+  +|+++|.++..  ...+.+..    .....++ ++   +.+ .++++|+||+
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~----~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG----FDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT----CEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----CcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            468999998 9999999999999998  99999987421  12222211    1111111 12   112 2578999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +.+.           ...|..    ++..+++.+..-++..+.+|...      +.++..|   -+.++--
T Consensus        77 ~~~~-----------~~~n~~----~~~~a~~~~~~~iia~~~~~~~~------~~l~~~G---~~~vi~p  123 (141)
T 3llv_A           77 TGSD-----------DEFNLK----ILKALRSVSDVYAIVRVSSPKKK------EEFEEAG---ANLVVLV  123 (141)
T ss_dssp             CCSC-----------HHHHHH----HHHHHHHHCCCCEEEEESCGGGH------HHHHHTT---CSEEEEH
T ss_pred             ecCC-----------HHHHHH----HHHHHHHhCCceEEEEEcChhHH------HHHHHcC---CCEEECH
Confidence            8641           123433    33344455523345445566542      3455555   3455544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.80  E-value=0.00011  Score=62.07  Aligned_cols=115  Identities=16%  Similarity=0.250  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|.+.  ......++....  .++..+.++ +   ++.++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999998  999999873  222223333211  123222211 1   2223333     


Q ss_pred             --CCCEEEEecCCCCCC--CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~--g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                        +.|+||++||.....  ..+   ....+..|+.....+.+.+    .+.. .+.|+++|.
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              899999999865321  122   2344566766544444444    3433 456666664

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.80  E-value=0.0001  Score=62.78  Aligned_cols=115  Identities=13%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccccccC-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-------   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-------   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.......++....  .++..+..+ +   ++.++++       
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999998  999999874332333343211  122222211 1   2233343       


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +.|++|++||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            8999999998653211   12   2334566665    5666666666544 356777764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.80  E-value=0.00015  Score=61.66  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC---CccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecC----CccccccC---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP---LVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN----DQLGQALE---   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~---~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t----~d~~eal~---   95 (256)
                      ++++|.|+||+|++|..++..|+..|   .  +|+++|.+... ....++....  .++..+..+    .++.++++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999999998   6  99999987421 1223332211  123322211    12233333   


Q ss_pred             ------CCCEEEEecCCCC
Q 025206           96 ------DSDVVIIPAGVPR  108 (256)
Q Consensus        96 ------~aDvVIi~ag~~~  108 (256)
                            ..|++|++||...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  7999999999754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.79  E-value=1.5e-05  Score=69.18  Aligned_cols=90  Identities=21%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHH---HHhcccCCCcEEEEecC----CccccccCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAA---DVGHINTRSEVAGYMGN----DQLGQALED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~---dl~~~~~~~~v~~~~~t----~d~~eal~~   96 (256)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..    .....   .+...    .++...++    .++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKAS----GANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTT----TCEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhC----CCEEEEeccCCHHHHHHHHcC
Confidence            56899999999999999999999997  8999888631    11111   22221    12222211    235567889


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  136 (256)
                      +|+||++++...             ....+.+++.+.+.+
T Consensus        78 ~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           78 VDVVISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             CSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999999987532             112345666666665

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.79  E-value=2.4e-05  Score=68.52  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hh-HHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG-VAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g-~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      +||.|+||+|++|++++..|+..|+  +|++++++.. .. ...++....    ++...++    .++.++++++|+||+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~----v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG----AIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT----CEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC----CEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            3899999999999999999999997  8999988742 21 112232211    2222211    245678899999999


Q ss_pred             ecCCC
Q 025206          103 PAGVP  107 (256)
Q Consensus       103 ~ag~~  107 (256)
                      +++..
T Consensus        86 ~a~~~   90 (318)
T 2r6j_A           86 ALAFP   90 (318)
T ss_dssp             CCCGG
T ss_pred             CCchh
Confidence            98753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.79  E-value=7.7e-05  Score=65.51  Aligned_cols=76  Identities=17%  Similarity=0.355  Sum_probs=55.7

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIG-aaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +||+||| + |.+|.+++..|...|+  +|.++|.+...                      +..+++++||+||++....
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCHH
Confidence            5899999 7 9999999999999998  99999976321                      2245789999999986321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1445566666654 667665554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.79  E-value=0.00011  Score=68.82  Aligned_cols=99  Identities=12%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCC---CCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~---aDvVIi~  103 (256)
                      .++||+|||+ |.+|..++..|+..|+  +|.++|++...  ..++........+..   ++++++++++   +|+||++
T Consensus         4 ~~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVila   75 (474)
T 2iz1_A            4 AQANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLM   75 (474)
T ss_dssp             TTBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEE
Confidence            3579999998 9999999999999998  89999987321  112221100012332   3455666555   9999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      ...+               ..++++++.+.... |+.+||..+|..
T Consensus        76 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           76 VQAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            6322               12344556666655 567777777754

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.78  E-value=9.2e-05  Score=63.82  Aligned_cols=113  Identities=17%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccccc-------CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------ED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-------~~   96 (256)
                      .+++.|+||+|++|.+++..|+.+|.  +|++.|.+.....  ++.+.. ...+..+..+ ++   +.+++       ..
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45789999999999999999999998  9999998742211  111110 1123322211 11   22222       27


Q ss_pred             CCEEEEecCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||.....   ..+   ....+..|+..    .+.+.+.+.+... +.||++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~~sS  138 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS-GSVVNISS  138 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEcC
Confidence            89999999864211   122   23356667666    6777777766553 56666664

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.78  E-value=0.00021  Score=60.03  Aligned_cols=116  Identities=19%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++| .+..  .....++....  .++..+..+ ++   +.+++     
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899984 4432  22222332211  123322211 12   22222     


Q ss_pred             --CCCCEEEEecCCCCCC------CCCHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 025206           95 --EDSDVVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~------g~~r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tNP  147 (256)
                        .+.|+||++||.....      .++....+..|+.....+.+.    +.+.. .+.||++|..
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~  143 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSI  143 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCh
Confidence              2799999999865321      122344566776654444444    43333 4567777654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.77  E-value=0.00021  Score=61.14  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|++.  +.....++.......++..+..+ ++   +.+++      
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999873  22222333221101123322211 12   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC----CC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG----MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....+    .+   ....+..|+    ...+.+.+.+.+.. .+.||++|.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             26899999999753311    12   223455564    34456666666554 356776764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.77  E-value=0.0002  Score=61.81  Aligned_cols=129  Identities=12%  Similarity=0.095  Sum_probs=76.2

Q ss_pred             ccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc--
Q 025206           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ--   89 (256)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d--   89 (256)
                      |..++.|.+...+.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  ......++.... ..++..+..+ ++  
T Consensus        14 ~~~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~   90 (277)
T 4fc7_A           14 PAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPP   90 (277)
T ss_dssp             SCCCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHH
T ss_pred             ccCCCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHH
Confidence            445556666666777899999999999999999999998  999999873  222233332211 1122222211 11  


Q ss_pred             -cccc-------cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           90 -LGQA-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        90 -~~ea-------l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                       ++++       +...|++|++||......   .+   -...+..|+.....+.+.+.+.   ...+.||++|.
T Consensus        91 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (277)
T 4fc7_A           91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITA  164 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence             1222       237899999998643211   12   2334566665555555544322   13467777764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.76  E-value=0.00015  Score=60.71  Aligned_cols=77  Identities=21%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCC--CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~--~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.++|.|+||+|++|..++..|+.+|  .  +|+++|.+.....  ++.+. ...++..+..+ +   ++.++++     
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            34689999999999999999999998  7  9999998742211  12211 11223333211 1   2223333     


Q ss_pred             ----CCCEEEEecCCCC
Q 025206           96 ----DSDVVIIPAGVPR  108 (256)
Q Consensus        96 ----~aDvVIi~ag~~~  108 (256)
                          +.|+||++||...
T Consensus        77 ~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             HGGGCCCEEEECCCCCC
T ss_pred             cCCCCCcEEEECCcccC
Confidence                8999999998754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.76  E-value=7.5e-05  Score=63.47  Aligned_cols=118  Identities=20%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhccc-----CCCcEEEEecC-Cc---cccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN-----TRSEVAGYMGN-DQ---LGQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~-----~~~~v~~~~~t-~d---~~eal~   95 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++....     ...++..+..+ ++   +.++++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            446899999999999999999999998  9999998732  11111221110     00122222211 11   222333


Q ss_pred             C-------C-CEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 025206           96 D-------S-DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (256)
Q Consensus        96 ~-------a-DvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~----~~p~~~iiv~tN  146 (256)
                      +       . |+||++||......   .+   ....+..|+.....+.+.+.+    ....+.||++|.
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            3       3 99999998753211   12   233456665555555544443    332467777764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.76  E-value=0.00023  Score=60.08  Aligned_cols=115  Identities=15%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc---ccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ---ALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e---al~~a   97 (256)
                      +.++|.|+||+|.+|.+++..|+.+|.  +|++.|.+.  +.....++..     .+.....+ ++   +.+   .+...
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCCC
Confidence            456899999999999999999999998  999999873  2222222221     12222111 11   112   23478


Q ss_pred             CEEEEecCCCCCC------CCCHHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCCC
Q 025206           98 DVVIIPAGVPRKP------GMTRDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        98 DvVIi~ag~~~~~------g~~r~d~~~~N~~i~~~----i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      |++|++||.....      .++....+..|+.....    +.+.+.+. ..+.||++|....
T Consensus        86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~  146 (249)
T 3f9i_A           86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVG  146 (249)
T ss_dssp             SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHh
Confidence            9999999864321      12334556666554444    44444433 3467777775443

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.75  E-value=9.9e-05  Score=64.12  Aligned_cols=118  Identities=12%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      .+.++|.|+||+|++|.+++..|+++|.  +|+++|.+.  ......++.... ..++..+.++ ++   +.+++     
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  999999873  222223332210 1123322211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~----~~p~~~iiv~tN  146 (256)
                        ...|+||++||.....   ..+   ....+..|+.....+.+.+.+    ....+.+|++|.
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence              3569999999864321   112   233456666555444444432    334567777764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.75  E-value=4.6e-05  Score=65.18  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |||+|||+ |.+|..++..|...| +  +|.++|++...  ...+.+. ..  +..   ..++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~-~g--~~~---~~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKE-LG--VET---SATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHH-TC--CEE---ESSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHh-cC--CEE---eCCHHHHh-cCCEEEEEeC-c
Confidence            58999998 999999999999888 6  99999987321  1222221 11  222   12445678 9999999853 1


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                                     ..+.++++.+.. . +.+++.++|.+.
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~   92 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLS   92 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCC
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCC
Confidence                           113444444443 3 667776667766

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.74  E-value=0.0004  Score=59.21  Aligned_cols=117  Identities=9%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      ++.+++.|+||+|.+|.+++..|+.+|.  +|+++|.+.  +.....++....  .++..+..+ ++   +++.+     
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDE   79 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  899999873  222233343211  223332211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+.   ...+..|+...    +.+.+.+.+....+.||++|.
T Consensus        80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence              37899999998643211   122   23455665544    444455445555677777764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.74  E-value=0.00017  Score=65.72  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCCc-hhHHHH-Hhccc------CCCc--EE----EEecCCcccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAAD-VGHIN------TRSE--VA----GYMGNDQLGQ   92 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~~-~g~~~d-l~~~~------~~~~--v~----~~~~t~d~~e   92 (256)
                      +|||+|||+ |.+|..++..|+. .|+  +|.++|.... ...... +....      ....  ..    ....++++++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            379999998 9999999999987 487  9999993211 111122 12111      0000  11    0001346667


Q ss_pred             ccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 025206           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM  143 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv  143 (256)
                      +++++|+||++...+                ...++++++..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            889999999986322                1245667777665 5665544

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.74  E-value=9.6e-06  Score=68.35  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccc-------c--CCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------L--EDSD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ea-------l--~~aD   98 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++.....  + ........+..   ..++.++       +  ...|
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~-~~~~~~~D~~~---~~~~~~~~~~~~~~~~~g~id   74 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQA--D-SNILVDGNKNW---TEQEQSILEQTASSLQGSQVD   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTS--S-EEEECCTTSCH---HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccc--c-ccEEEeCCCCC---HHHHHHHHHHHHHHhCCCCCC
Confidence            45799999999999999999999997  9999998732110  0 00000001100   0011112       2  3789


Q ss_pred             EEEEecCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           99 VVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      ++|++||.....    ..+   ....+..|+.....+.+.+.++- +.+.||++|.
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            999999964321    111   23456677777666677666553 2467777764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.73  E-value=0.00012  Score=64.18  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-------   94 (256)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ ++   +.+++       
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998  999999873  223333343221  122222211 12   22222       


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||......   .+   ....+..|+.    +++.+.+.+.+..+.+.|+++|.
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            37899999999753211   12   2334555644    44455555565555677777764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.73  E-value=0.00043  Score=54.50  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHh-cccCCCcEEEEecC-Cc---cccc-cCCC
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGYMGN-DQ---LGQA-LEDS   97 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~-~~~~~~~v~~~~~t-~d---~~ea-l~~a   97 (256)
                      .....++|+|+|+ |.+|..++..|...|.  +|+++|.+....  ..+. ...    ...+.+. .+   +.++ ++++
T Consensus        15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~g----~~~~~~d~~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           15 KKQKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEFS----GFTVVGDAAEFETLKECGMEKA   85 (155)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTCC----SEEEESCTTSHHHHHTTTGGGC
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcCC----CcEEEecCCCHHHHHHcCcccC
Confidence            3445679999998 9999999999999997  999999874221  1111 111    1111111 11   2233 6789


Q ss_pred             CEEEEecC
Q 025206           98 DVVIIPAG  105 (256)
Q Consensus        98 DvVIi~ag  105 (256)
                      |+||++.+
T Consensus        86 d~Vi~~~~   93 (155)
T 2g1u_A           86 DMVFAFTN   93 (155)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEEeC
Confidence            99999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.72  E-value=5.1e-06  Score=70.95  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH----HHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~----~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++|.|+||+|.+|..++..|+.+|.  +|+++|.+.....    ..|+.+..   .++..  -.++.+.+...|++|++|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEECC
Confidence            4789999999999999999999998  8999998742110    01111000   00000  001112234679999999


Q ss_pred             CCCCCC----CC---CHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          105 GVPRKP----GM---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       105 g~~~~~----g~---~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      |.....    ..   +....+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        96 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (251)
T 3orf_A           96 GGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA  145 (251)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence            864321    11   123456677777777777766554 3467777764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.71  E-value=0.00067  Score=58.20  Aligned_cols=117  Identities=20%  Similarity=0.299  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.++|.|+||+|++|..++..|+..|.  +|+++|.+.  ......++....  .++..+..+ ++   +.++       
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999873  222222333211  123322211 11   2222       


Q ss_pred             cCCCCEEEEecCCCCCCCC------CHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206           94 LEDSDVVIIPAGVPRKPGM------TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~------~r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      +.+.|+||++||.......      +....+..|+..    .+.+.+.+.+. ..+.||++|...
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence            2378999999987542211      122345666555    34444444433 346677776543

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.71  E-value=0.00017  Score=62.35  Aligned_cols=113  Identities=16%  Similarity=0.163  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-------C
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-------E   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------~   95 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|++.  +.....++...   ..+..+..+ +   ++.+++       .
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999998  999999873  22222333221   122222211 1   122222       3


Q ss_pred             CCCEEEEecCCCCC--C--CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRK--P--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~--~--g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||....  +  ..+   ....+..|+..    .+.+.+.+.+....+.||++|.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            46999999997532  1  112   22345556444    5556666655543326776764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.70  E-value=0.00038  Score=59.44  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++...   ..+..+..+ +   ++.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998732  2222223211   123322211 1   2222332     


Q ss_pred             --CCCEEEEecCCCCCC-----CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~-----g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                        +.|+||++||.....     ..+   ..+.+..|+.....+.+.+.++   ...+.||++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              799999999864321     111   2345666766555555555443   23456777764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.70  E-value=0.00012  Score=68.74  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc-c---CCCcEEEEecCCccccccC---CCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-N---TRSEVAGYMGNDQLGQALE---DSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~-~---~~~~v~~~~~t~d~~eal~---~aDvVI  101 (256)
                      |||+|||+ |.+|..++..|+..|+  +|.++|++...  ..++... .   ....+..   +++++++++   ++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSK--SEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEE
Confidence            68999998 9999999999999998  89999987321  1112211 0   0112332   345555554   599999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      ++...+               ..++++++.+.... |+.+||..+|..
T Consensus        74 laVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           74 ILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             ECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             EecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            996322               11334445555554 667777777765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.69  E-value=0.00017  Score=67.79  Aligned_cols=97  Identities=15%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc-ccCCCcEEEEecCCcccccc---CCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL---EDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~eal---~~aDvVIi~a  104 (256)
                      |||+|||+ |.+|+.++..|+..|+  +|.++|++...  ..++.. ......+..   ++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999998 9999999999999998  89999987422  122222 000011322   34555554   5999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      ..+               ..++++++.+.... |+.+||..+|..
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~  104 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSE  104 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            322               11334445555555 567777777754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.69  E-value=0.00018  Score=63.60  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|++.|++.  +.....++........+..+..+ ++   +.+++      
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999998  999999873  22222333321111123322211 11   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHh-----CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKY-----CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~-----~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+..    ++.+.+.+.+.     ...+.||++|.
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence             36799999999643211   11   23345566443    44444555443     13567777764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.69  E-value=0.00032  Score=60.94  Aligned_cols=120  Identities=13%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc---CCCcEEEEecC-C---ccccccC-
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYMGN-D---QLGQALE-   95 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~---~~~~v~~~~~t-~---d~~eal~-   95 (256)
                      .+.++|.|+||+|++|.+++..|+.+|.  +|+++|.+.  ......++....   ...++..+..+ +   ++.++++ 
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            4556899999999999999999999998  999999873  222233333210   11233333211 1   1222232 


Q ss_pred             ------CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 025206           96 ------DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (256)
Q Consensus        96 ------~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNP  147 (256)
                            ..|+||++||......   .+   ....+..|+.....+++.+.+..   ..+.+|+++..
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence                  5899999998543211   12   23346677766666666654421   24567767643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.69  E-value=0.00029  Score=60.39  Aligned_cols=117  Identities=12%  Similarity=0.164  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c---ccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L---GQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~---~eal~~a   97 (256)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+.  +.....++........+.....+ ++   +   .+.+...
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            345789999999999999999999998  999999873  22233333322111223222211 11   1   1234579


Q ss_pred             CEEEEecCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           98 DVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~~g---~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++|++||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIAS  144 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence            99999999753221   122   2335666555    45555555443 3466777764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.69  E-value=0.00019  Score=61.24  Aligned_cols=117  Identities=17%  Similarity=0.281  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.  ......++........+..+..+ +   ++.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999998  999999873  22222333211001123222211 1   2223333     


Q ss_pred             -CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 -DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 -~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +.|++|++||......   .+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence             4999999998653211   12   233455565544    55555555544 356776664

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.68  E-value=0.00025  Score=60.18  Aligned_cols=116  Identities=15%  Similarity=0.243  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~----   95 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|++.|. +.  ......++....  ..+..+..+ +   ++.+.++    
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998 42  222222332211  123222211 1   1222233    


Q ss_pred             ---CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                         +.|+||++||.....   ..+   ....+..|+...    +.+.+.+.+..+.+.||++|.
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence               789999999875321   112   223455565444    444444444443567777764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.68  E-value=0.00037  Score=60.28  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=70.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|.+.  +.....++.....  ++..+..+ +   ++++.++     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999874  3333334433211  12222111 1   2222333     


Q ss_pred             --CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ..|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+....+.||+++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence              7999999999754221   122   223455644    44555555555554567777764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.68  E-value=0.00053  Score=58.45  Aligned_cols=118  Identities=11%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCCC--cHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-C---cccccc-----
Q 025206           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~--VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-----   94 (256)
                      +.+++.|+||+|+  +|..++..|+.+|.  +|++.|.+. ......++.......++..+..+ +   ++++.+     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            4458999999988  99999999999998  899998873 22222333221111122222211 1   222222     


Q ss_pred             --CCCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                        ...|++|++||....     +  ..+   ....+..|+.....+.+.+.++- +.+.||++|.
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence              368999999987531     1  122   23345667776677777776654 4567777764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.65  E-value=0.00041  Score=59.52  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++.... ..++..+..    ..++++.       
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345889999999999999999999998  899999873  222233333211 112332221    1122222       


Q ss_pred             cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+....+.||++|.
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            237999999999754221   122   234555644    44555566666555677777764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.65  E-value=0.00065  Score=58.10  Aligned_cols=117  Identities=22%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.|.+.  +.....++.... ..++..+..+ ++   +++.+      
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345889999999999999999999998  999999873  233334444322 1123333211 12   22222      


Q ss_pred             -CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                       ...|++|++||.....   ..+.   ...+..|+.-.    +.+.+.+.+.. .+.||++|..
T Consensus        86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  148 (262)
T 3pk0_A           86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSI  148 (262)
T ss_dssp             HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCS
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEech
Confidence             3799999999975321   1122   23456665444    44445454444 4566666543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.65  E-value=0.0002  Score=61.27  Aligned_cols=112  Identities=17%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC----CccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++..  .....++..     .+..+..+    .++.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998732  222222221     12212111    12223343     


Q ss_pred             --CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ..|++|++||.....   ..+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence              899999999865321   112   233456665544    55666665554 456777764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.65  E-value=0.00043  Score=58.90  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+.  ......++....  .++..+..+ .+   +.+++      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999873  222223333211  123322211 11   22222      


Q ss_pred             --CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 025206           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tNP  147 (256)
                        ...|+||++||.....   ..+   ....+..|+.....+.+.+    .+.. .+.||++|..
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  152 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI  152 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence              5789999999864321   112   2334566766555555544    4443 3566667643

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.65  E-value=0.00011  Score=62.86  Aligned_cols=65  Identities=17%  Similarity=0.239  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |.+|..++..|...|+  +|+++|..+......++....    +.     .++.+++++||+||++..
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEECC
Confidence            58999998 9999999999999998  999988732222223333221    11     134567889999999863

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.00019  Score=67.69  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc-ccCCCcEEEEecCCccccccCC---CCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~eal~~---aDvVIi~a  104 (256)
                      .||+|||+ |.+|.+++..|+..|+  +|.++|++..+  ..++.. ......+.   .+.++++++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSII---GATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEEc
Confidence            58999998 9999999999999998  99999987532  222322 10001232   23456666665   99999996


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      ..+               ..++++++.+..+. |+.+||..+|-.
T Consensus        83 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           83 KAG---------------APVDALINQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             CSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             CCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            332               12445556676665 567887787754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.64  E-value=0.0013  Score=55.64  Aligned_cols=114  Identities=14%  Similarity=0.148  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ ++   +.++       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999873  222223333211  123322211 12   1122       


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.....   ..+.   ...+..|+...    +.+.+.+.+..  +.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            23799999999975321   1222   23455665444    44444444443  67777764

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.64  E-value=2.6e-05  Score=63.77  Aligned_cols=110  Identities=17%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccC---CCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~---~aDvVIi~  103 (256)
                      ++|.|+||+|++|..++..|+.+    +|+++|.+..  .....++........+.   ...++.++++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47899999999999999999877    8999998732  11111221100011110   0112334455   89999999


Q ss_pred             cCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~------g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ||.....      .++....+..|+.....+.+.+.+. +.+.+|++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9865321      1223456777888888888877332 3456776764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.64  E-value=0.00017  Score=63.46  Aligned_cols=65  Identities=18%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .||++||. |.+|.++|..|+..|+  +|+.||+++.+  ..++.+..    .+.   ..++.+++++||+||++..
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeecc
Confidence            38999998 9999999999999999  99999987422  12222211    221   2356788999999999853

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.63  E-value=0.00053  Score=58.99  Aligned_cols=116  Identities=21%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--------------chhHHHHHhcccCCCcEEEEecC-Cc--
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYMGN-DQ--   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--------------~~g~~~dl~~~~~~~~v~~~~~t-~d--   89 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|++.              +.....++....  .++..+..+ ++  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            345799999999999999999999998  999999861              011112222211  123322211 11  


Q ss_pred             -ccccc-------CCCCEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           90 -LGQAL-------EDSDVVIIPAGVPRKPG-M---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        90 -~~eal-------~~aDvVIi~ag~~~~~g-~---~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                       +.+.+       ...|++|++||...... .   +....+..|+.-...+.+.+.++- ..+.||++|.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence             22222       37999999999753221 1   234567788877777888777664 4567777764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.63  E-value=0.00083  Score=57.91  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.|.+.  +.....++..... ...+..+..+ ++   +.+++     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999873  2333344443221 1133333211 12   12222     


Q ss_pred             --CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                        ...|++|++||.....+    .+   ....+..|+.-...+.+.+.++   ...+.||++|.
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  151 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISS  151 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeC
Confidence              36799999999632221    12   2334566765544444443332   23567777763

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.63  E-value=0.00018  Score=61.33  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ +   ++.+.+      
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNL   88 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999873  222223333211  123222211 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....+    .+   ....+..|+...    +.+.+.+.+. ..+.||++|.
T Consensus        89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  151 (260)
T 2zat_A           89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSS  151 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence             37999999998642111    12   233456665544    4444444443 3456776664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.63  E-value=0.00042  Score=58.27  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC-------
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-------   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-------   95 (256)
                      +++.|+||+|.+|..++..|+++|.  +|+++|.+.  ......++.+. ...++..+..+ +   ++.++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  999999873  22222223111 01123322211 1   2223333       


Q ss_pred             CCCEEEEecCCCCCCC------CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG------MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g------~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +.|+||++||......      .+   ....+..|+...    +.+.+.+.+.. .+.+|++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            7999999998643211      11   223455565433    45555555444 356666664

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.63  E-value=0.00057  Score=59.01  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.  +.....++....   ++..+..+ ++   ++++       
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGEL  102 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHh
Confidence            445899999999999999999999998  999999873  222223333211   22222111 11   1122       


Q ss_pred             cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCC---CcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCP---NAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p---~~~iiv~tN  146 (256)
                      +...|++|++||.....   ..+   ....+..|+...    +.+.+.+.+...   .+.||++|.
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            23799999999864321   111   234456665444    555566655542   167777764

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.63  E-value=0.00016  Score=62.20  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhc-ccCCCcEEEEecC-C---ccccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYMGN-D---QLGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~-~~~~~~v~~~~~t-~---d~~eal~----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++.. .....++..+..+ +   ++.++++    
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  2222233310 0001123322211 1   2223333    


Q ss_pred             ---CCCEEEEecCCCCCCC---C----CH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           96 ---DSDVVIIPAGVPRKPG---M----TR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~~g---~----~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                         +.|++|++||......   .    +.   ...+..|+...    +.+.+.+.+..  +.||++|..
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~  149 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSI  149 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCT
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecc
Confidence               8999999998643211   1    22   23455565444    44444444333  677777654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.63  E-value=0.00054  Score=58.06  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++.     .++..+..+    .++++.+      
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999873  222222221     112211110    1122222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+.-    .+.+.+.+.+..+.+.||+++.
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence             37999999999753221   12   22345556544    4555555776665677777764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.62  E-value=0.00056  Score=58.79  Aligned_cols=116  Identities=20%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----------c---hhHHHHHhcccCCCcEEEEecC-C---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----------T---PGVAADVGHINTRSEVAGYMGN-D---   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----------~---~g~~~dl~~~~~~~~v~~~~~t-~---   88 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.           .   .....++....  .++..+..+ +   
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            445899999999999999999999998  999999761           1   11112222211  123332211 1   


Q ss_pred             cccccc-------CCCCEEEEecCCCCCCC--CCHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           89 QLGQAL-------EDSDVVIIPAGVPRKPG--MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        89 d~~eal-------~~aDvVIi~ag~~~~~g--~~r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++++.+       ...|++|++||......  ++....+..|+.    +.+.+.+.+.+....+.||++|.
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            122223       37899999999753222  112334556644    44555555666555677877774

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.62  E-value=0.0003  Score=58.83  Aligned_cols=78  Identities=23%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE------   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~------   95 (256)
                      ++++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++.... ..++..+..+ +   ++.++++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999999998  899999873  223333333111 1122222211 1   2223333      


Q ss_pred             -CCCEEEEecCCCC
Q 025206           96 -DSDVVIIPAGVPR  108 (256)
Q Consensus        96 -~aDvVIi~ag~~~  108 (256)
                       ..|++|++||...
T Consensus        79 g~id~li~~Ag~~~   92 (235)
T 3l77_A           79 GDVDVVVANAGLGY   92 (235)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence             7899999999753

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.62  E-value=0.00019  Score=60.22  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|.+.  ......++.... ..++.....+ .   ++.+++      
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999998  999999873  222222222100 1123222211 1   222233      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       .+.|+||++||......   .+   ..+.+..|+...    +.+.+.+.+.. .+.+|++|.
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  144 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISS  144 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             38999999998753211   12   234566676655    44444444443 356666663

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.62  E-value=0.00087  Score=57.98  Aligned_cols=113  Identities=19%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc---ccc-------
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ---LGQ-------   92 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~e-------   92 (256)
                      .+.+++.|+||+|.+|..++..|++.|.  +|++.|.+.  +.....++..     .+..+.. -+|   +.+       
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~   99 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-----GAAACRVDVSDEQQIIAMVDACVA   99 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-----SCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----cceEEEecCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999998  999999873  2222222211     1111111 111   112       


Q ss_pred             ccCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .+...|++|.+||.....   ..+   ....+..|+....    .+.+.+.+. ..+.||++|.
T Consensus       100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            223789999999975321   122   2334566765544    444444433 4567777764

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.62  E-value=0.00055  Score=57.67  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l   94 (256)
                      ++++.|+||+|.+|..++..|+.+|.  +|++.|++.  ++....++..     .+..+..+ +   ++++.       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  999999873  2222222321     12222111 1   11222       2


Q ss_pred             CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      ...|++|++||.....   ..+   ....+..|+.....+.+.+.+.-  ..+.||+++.
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            3689999999974321   112   23456667665544555443331  2236666654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.62  E-value=0.00037  Score=59.49  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  +.....++....  .++..+..+ ++   +.+.       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899999873  222223333211  123322211 12   1111       


Q ss_pred             cCCCCEEEEecCCC-CC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVP-RK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~-~~-~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.. .. +  ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            23789999999865 21 1  1121   23455565444    44444444333 456777663

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.62  E-value=0.00014  Score=64.21  Aligned_cols=67  Identities=19%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .|+||++||. |.+|+++|..|+..|+  +|+.||+++.  .+.++....    .+.   ..++.+++++||+||.+..
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~--~~~~l~~~G----a~~---a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG----ASA---ARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT----CEE---CSSHHHHHTTCSEEEECCS
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHcC----CEE---cCCHHHHHhcCCceeecCC
Confidence            3569999998 9999999999999999  9999998742  233444322    111   2356788999999999853

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.61  E-value=0.00042  Score=59.17  Aligned_cols=116  Identities=22%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l   94 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  ..+..+..+ ++   +.+.       +
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  899999873  223333333221  123322211 11   1112       2


Q ss_pred             CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ...|++|++||.....+    .+   ....+..|+.....+    .+.+.+. ..+.||++|...
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  168 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLA  168 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSC
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechh
Confidence            36899999999732221    12   233455665444444    4444333 456777776543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.61  E-value=0.00045  Score=58.19  Aligned_cols=112  Identities=19%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcE-EEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV-AGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v-~~~~~t-~d---~~ea------   93 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|+++|.+..  .....++..     ++ ..+..+ ++   +.++      
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGA-----AVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc-----cceeEEEEecCCHHHHHHHHHHHHh
Confidence            345899999999999999999999998  9999998732  222222211     11 211111 11   2222      


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +.+.|+||++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.+|++|.
T Consensus        83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            257899999998753211   12   23345566554    445555555543 456666664

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.60  E-value=0.00033  Score=59.04  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  ......++.+..  .++..+..+ ++   +++.       
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999873  222223333221  123322211 11   1112       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~i~~~~p~~~iiv~tN  146 (256)
                      ....|++|++||......   .+   ....+..|+.....    +.+.+.+. +.+.||++|.
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  141 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGS  141 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence            235799999999754221   12   23345666554444    44444443 3456777764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.60  E-value=0.00018  Score=60.47  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=66.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---cccccc---CCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQAL---EDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal---~~aDv   99 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|.+.....  ++.+....  .+.+..+ +   ++.+++   ...|+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLD--SLVRECPG--IEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTT--CEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHcCC--CCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence            345899999999999999999999998  9999998732111  11110001  1111111 1   222333   35899


Q ss_pred             EEEecCCCCCCC---CC---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 025206          100 VIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       100 VIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNP  147 (256)
                      ||++||......   .+   ....+..|+.....+.    +.+.+....+.||++|..
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            999998653211   11   2345566765544444    444434434677777653

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.60  E-value=0.00073  Score=57.51  Aligned_cols=115  Identities=13%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ ++   +.+++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999873  222223332211  123222211 11   22222      


Q ss_pred             --CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||.....   ..+   ....+..|+.....+.+.+    .+. ..+.||++|.
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  146 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  146 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence              5799999999975321   112   2334556655544444444    333 3466777764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.60  E-value=0.00037  Score=58.32  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCC--chhHHHHHhcccCCCcEEE-Eec-CCc---cccc-------
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAG-YMG-NDQ---LGQA-------   93 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~--~~g~~~dl~~~~~~~~v~~-~~~-t~d---~~ea-------   93 (256)
                      ++|.|+||+|++|..++..|+.+|.  +|+++ +.+.  ......++.....  .+.. +.. -++   ++++       
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGS--PLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTC--SCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            4799999999999999999999998  88888 6652  2222222322111  1211 111 112   2222       


Q ss_pred             cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +.+.|+||++||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            34799999999875321   111   23445666655    566666665554 356776664

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.59  E-value=6.8e-05  Score=64.09  Aligned_cols=68  Identities=13%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|.++..  ..++.+.. .  +..   ..++.++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEeC
Confidence            3579999998 9999999999998886  89999987321  11222110 0  111   2355677889999999963

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.58  E-value=0.00035  Score=59.47  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++..  .....++.     .++..+..+ +   ++.++++     
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998732  11111221     112222111 1   2222332     


Q ss_pred             --CCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ..|++|++||......   .+   ....+..|+..    .+.+.+.+++.. .+.||++|.
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence              7999999998753211   12   22345556443    346666666554 456777764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.58  E-value=0.00034  Score=59.46  Aligned_cols=111  Identities=18%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++..  .....++.     .++..+..+ ++   +.++       
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998732  22222221     122222111 11   1222       


Q ss_pred             cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.....   ..+   ....+..|+.    ..+.+.+.+.+..  +.||++|.
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence            23579999999975321   112   2334556644    4555666665443  67777764

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.58  E-value=0.00066  Score=57.07  Aligned_cols=117  Identities=16%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC---Cc---ccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN---DQ---LGQ------   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t---~d---~~e------   92 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  +.....++...... .......+   ++   +.+      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999873  22222333322111 11111111   11   111      


Q ss_pred             -ccCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           93 -ALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        93 -al~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                       .+...|++|++||.....+    .+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS  154 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSS  154 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence             2237899999998642221    12   2334556655544444444322   23467777764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.58  E-value=7.1e-05  Score=63.89  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~----   95 (256)
                      +.++|.|+||+|++|.+++..|+.+|.  +|+++|. +.  ......++....  .++..+.++ +   ++.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999998  8999988 42  222223333211  123222211 1   2223333    


Q ss_pred             ---CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                         +.|+||++||.....   ..+   ....+..|+.....+.+.+.++. ..+.+|++|.
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence               789999999875321   112   23456778777777777766653 1256776654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.58  E-value=6.7e-05  Score=65.68  Aligned_cols=109  Identities=12%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~ag~~  107 (256)
                      |||+|||+ |.+|..++..|...|+  +|.++|.+...   .++.............   +..+++ +++|+||++.-..
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilavk~~   73 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAVKTH   73 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECSCGG
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec---CchHhcCCCCCEEEEeCCcc
Confidence            69999998 9999999999998887  89999987311   0011110011122211   223455 8999999985211


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                                      .+.++++.++.+- |+..|+.+.|-++...          . +|.+++++-
T Consensus        74 ----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~----------~-~~~~~v~~g  113 (294)
T 3g17_A           74 ----------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE----------H-IPFKNVCQA  113 (294)
T ss_dssp             ----------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG----------G-CCCSCEEEC
T ss_pred             ----------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh----------h-CCCCcEEEE
Confidence                            1334555555554 6778888999988521          1 677777653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.57  E-value=0.00041  Score=58.60  Aligned_cols=115  Identities=17%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+. +.  ......++....  .++..+..+ +|   +.+.+     
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVD   78 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999988 42  222223333211  123222211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence              37999999999753211   12   23345666554    555666665544 356777664

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.57  E-value=0.00025  Score=61.22  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|+++|++.  +.....++....  .++..+..+ ++   +.++       
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  222223333211  122222211 11   1222       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-----~p~~~iiv~tN  146 (256)
                      +...|++|++||......   .+   ....+..|+.....+.+.+.+.     ...+.||++|.
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS  160 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  160 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence            237999999999753211   12   2345666766665566554433     12356777764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.57  E-value=0.00075  Score=52.25  Aligned_cols=110  Identities=13%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-ccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-ALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-al~~aDvVIi~  103 (256)
                      .+|.|+|+ |.+|+.++..|...|+  +|+++|.++..  ...+.+..    +....++ ++   +.+ .+.++|+||++
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG----VRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT----CEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC----CCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            58999998 9999999999999998  99999998421  22222221    1112111 11   222 35789999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC-CCCCchHHHHHHHHHhCCCCCCcEE
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-PVNSTVPIAAEVFKKAGTYNEKKLF  171 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN-Pvd~~~~i~~~~~~~~~~~~~~kvi  171 (256)
                      .+..           ..|..    ++..+++.+|+..++.-.| |..      .+.++..|   .+.++
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~~------~~~l~~~G---~d~vi  123 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDDE------VAYITERG---ANQVV  123 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHHH------HHHHHHTT---CSEEE
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHHH------HHHHHHCC---CCEEE
Confidence            5321           22332    3445666778876665554 433      24555554   44554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.57  E-value=0.0003  Score=59.80  Aligned_cols=114  Identities=22%  Similarity=0.303  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-------C
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------E   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-------~   95 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  .++..+..+ +|   +.+++       .
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999998  999999873  222223333211  122222211 12   22233       3


Q ss_pred             CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+..+.+.||++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998643211   122   234555644    44555566655543567777764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.56  E-value=0.00059  Score=58.98  Aligned_cols=121  Identities=13%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc--
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA--   93 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea--   93 (256)
                      .+.+.+.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++....  ..+..+..+ +|   +.++  
T Consensus        18 ~~~m~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~   93 (279)
T 3sju_A           18 GSHMSRPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVA   93 (279)
T ss_dssp             -------CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHH
T ss_pred             cccccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHH
Confidence            33344556799999999999999999999998  899999873  233333443321  123322211 11   1122  


Q ss_pred             -----cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 025206           94 -----LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISN  146 (256)
Q Consensus        94 -----l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-----~p~~~iiv~tN  146 (256)
                           +...|++|++||......   .+   -...+..|+.....+.+.+.+.     ...+.||++|.
T Consensus        94 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS  162 (279)
T 3sju_A           94 AAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS  162 (279)
T ss_dssp             HHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECC
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECC
Confidence                 237899999999753211   12   2334566766655555554331     23467777764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.55  E-value=0.00034  Score=60.37  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~----   95 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  .++..+..+ +|   ++++++    
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899987763   222233333221  122222211 12   222233    


Q ss_pred             ---CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           96 ---DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                         ..|++|++||......   .+   ....+..|+.....+.+.+.+.- +.+.||+++.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence               7899999999753221   12   23456677766666666666553 3567777764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.55  E-value=0.00073  Score=57.97  Aligned_cols=124  Identities=15%  Similarity=0.191  Sum_probs=76.0

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA   93 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea   93 (256)
                      +.....+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   +.....++....  .++..+..+ +|   +.+.
T Consensus        11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~   86 (270)
T 3is3_A           11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKL   86 (270)
T ss_dssp             CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHH
T ss_pred             cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHH
Confidence            444455667899999999999999999999998  999988753   222223333221  123322211 12   2222


Q ss_pred             c-------CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206           94 L-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus        94 l-------~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      +       ...|++|++||......   .+   ....+..|+.-...+.+.+.++- +.+.||+++...
T Consensus        87 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           87 FDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            2       37899999999753221   12   23456777776666777666654 356777776543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.55  E-value=0.00015  Score=56.93  Aligned_cols=103  Identities=11%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccccc-cCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQA-LEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-l~~aDvVI  101 (256)
                      ...||.|+|+ |.+|+.++..|...|+  +|+++|.+.. .....+.+.. +..+....++ +   .+.++ ++++|.||
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~-~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPE-DDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCH-HHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCCh-HHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            3468999998 9999999999999998  9999998631 1111122110 0012222221 1   23333 88999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVN  149 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv-~tNPvd  149 (256)
                      ++.+.         +  ..|..    ++..+++.+|+..++. +.||..
T Consensus        77 ~~~~~---------d--~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           77 ALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EecCC---------h--HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            98532         1  23433    3334445566655544 456655

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.55  E-value=0.00043  Score=58.84  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|.+..  .....++.     ..+..+..+ +   ++.+++      
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQE   78 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  9999998742  21112221     112211111 1   122223      


Q ss_pred             -CCCCEEEEecCCCCCCC-------CC---HHHHHHHHHHHHHHHHHHHHHh---------CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG-------MT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g-------~~---r~d~~~~N~~i~~~i~~~i~~~---------~p~~~iiv~tN  146 (256)
                       ...|++|++||......       .+   ....+..|+.-...+.+.+.++         ...+.||++|.
T Consensus        79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence             38999999999753211       11   2334566655544444444433         23466777764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.55  E-value=0.0012  Score=56.97  Aligned_cols=116  Identities=19%  Similarity=0.219  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--------------hh----HHHHHhcccCCCcEEEEecC-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------------PG----VAADVGHINTRSEVAGYMGN-   87 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--------------~g----~~~dl~~~~~~~~v~~~~~t-   87 (256)
                      +.+.+.|+||+|.+|..++..|++.|.  +|+++|+++.              ..    ....+...  ..++..+..+ 
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCC
Confidence            445789999999999999999999998  9999998610              11    11122211  1223332211 


Q ss_pred             Cc---ccccc-------CCCCEEEEecCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           88 DQ---LGQAL-------EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        88 ~d---~~eal-------~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++   +.+.+       ...|++|++||......    .+.   ...+..|+.    +.+.+.+.+.+....+.||++|.
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            11   22222       37899999999754322    122   234555644    44555555655555677777764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.55  E-value=0.00015  Score=62.96  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |.+|..++..|...|+  +|+++|.+...  ...+.+..    ++.   ..++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999998  89999987422  12233221    222   235567788999999985

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.54  E-value=0.00026  Score=59.37  Aligned_cols=114  Identities=21%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-------   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------   94 (256)
                      ++|.|+||+|++|..++..|+.+|.  +|++. +.+.  ......++....  .++..+..+ +   ++++++       
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999998  88884 5552  122222232211  122222211 1   222233       


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      .+.|+||++||......   .+   ....+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            27899999998754311   12   2334566665544444444332   23456777764

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.53  E-value=0.00047  Score=59.11  Aligned_cols=118  Identities=16%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc---
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL---   94 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal---   94 (256)
                      +.+.++|.|+||+|.+|..++..|+..|.  +|++.+. +.  ++....++....  .++..+..+ ++   +.+.+   
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~   98 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAV   98 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHH
Confidence            33445788999999999999999999998  8877744 32  222222332211  123322211 11   22222   


Q ss_pred             ----CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHH----HHHHHHHHh--CCCcEEEEecC
Q 025206           95 ----EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVK----DLCSAIAKY--CPNAIVNMISN  146 (256)
Q Consensus        95 ----~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~----~i~~~i~~~--~p~~~iiv~tN  146 (256)
                          ...|++|++||....++    .+   ....+..|+....    .+.+.+.+.  ...+.||++|.
T Consensus        99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A           99 DRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence                37899999999754322    12   2334566654444    444444432  23567777764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.53  E-value=0.0003  Score=59.93  Aligned_cols=111  Identities=20%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh-HHHHHhcccCCCcEEEEec-CC---ccccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMG-ND---QLGQA-------L   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g-~~~dl~~~~~~~~v~~~~~-t~---d~~ea-------l   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.... ...++..       ..+.. -+   +++++       +
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~D~~~~~~~~~~~~~~~~~~   75 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG-------AFFQVDLEDERERVRFVEEAAYAL   75 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC-------EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC-------CEEEeeCCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  999999874321 1122210       11110 11   12222       2


Q ss_pred             CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ...|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        76 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS  136 (256)
T 2d1y_A           76 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  136 (256)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            3789999999865321   112   2345666766555554444332   23467777764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.53  E-value=0.00037  Score=59.60  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             cCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccc
Q 025206           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ   92 (256)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e   92 (256)
                      -|.......++|.|+||+|.+|..++..|+.+|.  +|++.+...   ......++....  .++..+..+ ++   +.+
T Consensus        18 ~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~   93 (267)
T 4iiu_A           18 LYFQSNAMSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCRE   93 (267)
T ss_dssp             -------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHH
T ss_pred             hhhccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHH
Confidence            3444444556899999999999999999999998  887765432   222233333221  123322211 12   222


Q ss_pred             cc-------CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           93 AL-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al-------~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                      .+       ...|++|++||......   .+   ....+..|+.....+    .+.+.+....+.||++|.
T Consensus        94 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A           94 VLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            22       37999999999754221   12   233456665544434    444443455677777764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.53  E-value=0.00047  Score=59.64  Aligned_cols=115  Identities=18%  Similarity=0.337  Sum_probs=67.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.++|.|+||+|.+|..++..|+++|.  +|++++.+.  ......++....  .++..+..+ +|   +.++       
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  899988763  222223333211  123322211 12   2222       


Q ss_pred             cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|+||.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            24789999999875321   112   23445666555    444445444443 356776664

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.53  E-value=0.00055  Score=58.33  Aligned_cols=116  Identities=10%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.  +.....++.... ..++..+..+ ++   +.+++      
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  222222332110 1122222211 11   22223      


Q ss_pred             -CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence             3799999999875321   1122   2345556544    444444444443 456776664

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.53  E-value=0.00021  Score=61.34  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|.+..  ......+....  .++..+..+ +   ++.++++     
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  108 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKD  108 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998742  22222222111  122222211 1   1222332     


Q ss_pred             --CCCEEEEecCCCCC-C----CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206           96 --DSDVVIIPAGVPRK-P----GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        96 --~aDvVIi~ag~~~~-~----g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                        ..|+||++||.... .    ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus       109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  173 (279)
T 3ctm_A          109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSI  173 (279)
T ss_dssp             HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCC
T ss_pred             hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECch
Confidence              48999999986432 1    111   12345556555    567777776654 3466666643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.53  E-value=0.00076  Score=57.44  Aligned_cols=113  Identities=21%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+..  .....++..     .+..+..+ +   ++.++++     
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~   83 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDA   83 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998732  111111211     11111111 1   2223333     


Q ss_pred             --CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ..|++|++||......   .+   ....+..|+...    +...+.+.+....+.|++++.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence              7999999998653211   12   223455565443    344444444332466777664

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.53  E-value=0.00046  Score=57.88  Aligned_cols=116  Identities=18%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc---
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL---   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal---   94 (256)
                      ++|.|+||+|.+|..++..|+.+|...     +|++.|.+.  ......++...  ..++..+..+ ++   +.+++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999887522     789999873  22222333221  1123332211 11   22222   


Q ss_pred             ----CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 025206           95 ----EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ----~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tNP  147 (256)
                          ...|+||++||......   .+   ....+..|+.....+.+.+    .+. ..+.||++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                37999999999753211   12   2334556655544444444    333 34567777643

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.52  E-value=0.0003  Score=59.78  Aligned_cols=113  Identities=11%  Similarity=-0.007  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccc-------cCCCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~ea-------l~~aDvV  100 (256)
                      +++.|+||+|.+|..++..|+++|.  +|++.|.+... ....++.....  ++... ...++.+.       +...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP--QLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT--TSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC--cEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            3689999999999999999999998  99999987321 11122322111  11111 12233222       2478999


Q ss_pred             EEecCCC-CCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206          101 IIPAGVP-RKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       101 Ii~ag~~-~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      |++||.. ....   .+   ....+..|+.-    .+.+.+.+.+.. .+.||++|..
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  133 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSA  133 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCS
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCc
Confidence            9999975 2111   12   22345556543    444455554443 4567777643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.52  E-value=0.00049  Score=57.95  Aligned_cols=76  Identities=21%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-Cc--hhHHHHHhcccCCCcEEEEecC-C---ccccccC----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NT--PGVAADVGHINTRSEVAGYMGN-D---QLGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~----   95 (256)
                      +.++|.|+||+|++|.+++..|+.+|.  +|+++|.+ ..  .....++....  .++..+..+ +   ++.++++    
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  99999987 32  22223332211  123322211 1   2223333    


Q ss_pred             ---CCCEEEEecCC
Q 025206           96 ---DSDVVIIPAGV  106 (256)
Q Consensus        96 ---~aDvVIi~ag~  106 (256)
                         +.|+||++||.
T Consensus        82 ~~g~id~vi~~Ag~   95 (258)
T 3afn_B           82 KFGGIDVLINNAGG   95 (258)
T ss_dssp             HHSSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence               89999999986

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.52  E-value=0.00012  Score=65.82  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC----CCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~----~aDvVIi~  103 (256)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+.....  ......    +..   ..++.++++    +||+||++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~--~a~~~G----~~~---~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAK--SAVDEG----FDV---SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHH--HHHHTT----CCE---ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcC----Cee---eCCHHHHHHhcccCCCEEEEe
Confidence            468999998 9999999999999997  9999998742111  111111    111   124444444    58999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..                ...+.++++.+..+.|+++|+.++
T Consensus        76 vP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           76 VP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             SC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            52                122345556666666777766554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.52  E-value=0.00042  Score=61.60  Aligned_cols=134  Identities=18%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc--CCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~aDvVIi~  103 (256)
                      .++||.|||. |..|.+ +|..|..+|.  +|.++|.+........|.+..    +..+.+. +. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g----i~v~~g~-~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG----IDVYEGF-DA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT----CEEEESC-CG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC----CEEECCC-CH-HHcCCCCCCEEEEC
Confidence            4579999998 999996 8999999999  999999874222223344322    3333332 32 344  589999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC--CchHHHHHHHHHhCCCCCCcEEE
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd--~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      .|.|...- ......+++++++.++ +.+.++ ..+..+|-+|....  .++.+++.+++..| +++.-++|
T Consensus        74 pgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g-~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG-LAPGFLIG  142 (326)
T ss_dssp             TTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEec
Confidence            88764211 1111223334443322 222222 23334555654433  44456777787776 54433343

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.52  E-value=0.001  Score=57.81  Aligned_cols=116  Identities=11%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHH-HhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD-VGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~d-l~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+..  .....+ +....  .++..+..+ +|   +++.+     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999998742  111122 22211  223332211 11   12222     


Q ss_pred             --CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                        ...|++|++||.....+    .+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence              37899999998643221    12   23456778777777777776654 3467777764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.51  E-value=0.0018  Score=56.57  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------ea   93 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|.+.  +.....++.... ..++..+..+ +|   ++       +.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            445889999999999999999999998  999999884  333344444322 1123332211 12   11       12


Q ss_pred             cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~----~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|.+||......   .+.   ...+..|+....    .+.+.+.+... +.||++|.
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS  178 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSS  178 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence            346799999998753211   122   234566655444    44444455543 56666654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.51  E-value=7.8e-05  Score=64.52  Aligned_cols=114  Identities=16%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL-------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------   94 (256)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++..     ++..+..+ +   ++.+.+       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34678899999999999999999998  999999873  2222222321     11111111 1   222222       


Q ss_pred             CCCCEEEEecCCCCCCC----CCH---HHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i----~~~i~~~i~~~~p-~~~iiv~tNPv  148 (256)
                      ...|++|.+||.....+    .+.   ...+..|+..    .+.+.+.+.+..+ .+.||++|...
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~  166 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS  166 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence            38999999999743211    122   3345566544    5556666655542 56777776533

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.51  E-value=0.0013  Score=56.73  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-------------C--chhHHHHHhcccCCCcEEEEecC-Cc-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-------------N--TPGVAADVGHINTRSEVAGYMGN-DQ-   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-------------~--~~g~~~dl~~~~~~~~v~~~~~t-~d-   89 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++             .  +.....++....  .++..+..+ ++ 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            345789999999999999999999998  99999973             1  111222222211  123222211 11 


Q ss_pred             --cccc-------cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           90 --LGQA-------LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 --~~ea-------l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        +++.       +...|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+....+.||++|.
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              2222       237899999999753211   122   234555644    44555566666655677777764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.51  E-value=0.00041  Score=58.79  Aligned_cols=117  Identities=18%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|.+.  ......++.... ..++..+..+ +|   +.++       
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999997  999999863  222222332110 1123322211 11   1122       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||......   .+   ....+..|+.....+.+.    +.+....+.||++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            235899999998753211   12   223456665544444444    444443466776764

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.50  E-value=0.001  Score=56.32  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+. .... ..+....  .++..+..+ ++   ++++       +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            345799999999999999999999998  999999875 2221 1232211  123322211 12   2222       3


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            47899999998753211   12   22345666554    455555565554 456777764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.50  E-value=0.0006  Score=58.45  Aligned_cols=117  Identities=16%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CC--chhHHHHHhcccCCCcEEEEecC-Cc-------ccccc-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYMGN-DQ-------LGQAL-   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~--~~g~~~dl~~~~~~~~v~~~~~t-~d-------~~eal-   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|. +.  +.....++.... ..++..+..+ ++       +.+.+ 
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHH
Confidence            345799999999999999999999998  9999998 53  222223332210 1122222211 11       12222 


Q ss_pred             ------CCCCEEEEecCCCCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHHhC--CC------cEEEE
Q 025206           95 ------EDSDVVIIPAGVPRKPG-----------------MTRDDLFNINAGIVKDLCSAIAKYC--PN------AIVNM  143 (256)
Q Consensus        95 ------~~aDvVIi~ag~~~~~g-----------------~~r~d~~~~N~~i~~~i~~~i~~~~--p~------~~iiv  143 (256)
                            ...|++|++||......                 +.....+..|+.....+.+.+.++-  ..      +.||+
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence                  27899999999643211                 1112356667666666666665542  22      67777


Q ss_pred             ecC
Q 025206          144 ISN  146 (256)
Q Consensus       144 ~tN  146 (256)
                      +|.
T Consensus       167 isS  169 (276)
T 1mxh_A          167 LCD  169 (276)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.50  E-value=0.00054  Score=59.01  Aligned_cols=115  Identities=19%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------   94 (256)
                      +.+.+.|+||+|.+|..++..|+.+|.  +|++.|.+.  +.....++.+...  ++..+.. -+   ++.+.+      
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  999999873  2222233332211  1111111 11   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+.-...+    .+.+.+. ..+.||++|.
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence             37899999999753221   12   223456665544444    4444443 3467777763

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.50  E-value=0.00026  Score=60.88  Aligned_cols=112  Identities=24%  Similarity=0.277  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.|.+.  +.....++..     .+..+.. -+   ++.+.+      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-----GAVHHVVDLTNEVSVRALIDFTIDT   82 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999884  2222233311     1111111 11   122223      


Q ss_pred             -CCCCEEEEecCCCCC-CC----CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRK-PG----MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~-~g----~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.... ..    .+   ....+..|+.....+.+.+    .+. ..+.||++|.
T Consensus        83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  146 (271)
T 3tzq_B           83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS  146 (271)
T ss_dssp             HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence             379999999997522 11    12   2335666765554444444    443 3567777764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.50  E-value=0.0013  Score=56.02  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCC-CcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG-~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+| .+|..++..|+++|.  +|++.|.+.  +.....++.... ..++..+..+ ++   +.+.+     
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            456899999977 499999999999998  899999873  222333343221 1233333211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+.   ...+..|+..    .+.+.+.+.+....+.|+++|.
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence              36799999999753221   122   2345556443    4444444544445667777764

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.50  E-value=4.7e-05  Score=64.33  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccc-------c--CCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------L--EDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ea-------l--~~a   97 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|++.....  + ........+..   ..++.++       +  ...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~-~~~~~~~D~~~---~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEA--S-ASVIVKMTDSF---TEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTS--S-EEEECCCCSCH---HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhcc--C-CcEEEEcCCCC---HHHHHHHHHHHHHHhCCCCC
Confidence            345899999999999999999999998  9999998732110  0 00000011100   0111122       2  378


Q ss_pred             CEEEEecCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           98 DVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        98 DvVIi~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      |++|++||.....    ..+   ....+..|+.....+.+.+.+.- ..+.||++|.
T Consensus        78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            9999999964321    111   23345667766666666665543 2467777764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.49  E-value=0.00018  Score=60.15  Aligned_cols=111  Identities=19%  Similarity=0.156  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEec-CC---ccccccCC----CC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQALED----SD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal~~----aD   98 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|.+..  .....++.     .++..... -+   ++.+.++.    -|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~d   74 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLS-----NNVGYRARDLASHQEVEQLFEQLDSIPS   74 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCS-----SCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh-----hccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence            4689999999999999999999997  8999998732  21112221     11111111 11   12222222    29


Q ss_pred             EEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecC
Q 025206           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p-~~~iiv~tN  146 (256)
                      ++|++||......   .+   ....+..|+.....+.+.+.+.- . .+.+|+++.
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  130 (230)
T 3guy_A           75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMS  130 (230)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECC
T ss_pred             EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence            9999998653221   12   23345667665555555554432 1 235666654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.49  E-value=0.00035  Score=62.49  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+....... .....    +..   . ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~-a~~~G----~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAK-AEAHG----LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHH-HHHTT----CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHH-HHHCC----CEE---c-cHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999997  899999874221111 11111    222   1 4557889999999985

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.49  E-value=0.0026  Score=54.34  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccc-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------A   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------a   93 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++.......++..+..+ +|   +.+       .
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  899999873  22333334321111113222211 12   111       2


Q ss_pred             cCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      +...|++|++||.....   ..+.   ...+..|+.-...+.+.+.++   ...+.||++|.
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            24789999999975321   1222   334666766555555554432   23466776663

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.49  E-value=0.00015  Score=61.46  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---cccccc-------C
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQAL-------E   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal-------~   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++....  .++.+.. .  +..+.. -+   ++++++       .
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~~-~--~~~~~~D~~~~~~~~~~~~~~~~~~g   76 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPL--REAAEAV-G--AHPVVMDVADPASVERGFAEALAHLG   76 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHTT-T--CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHc-C--CEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999998  999999873211  1111100 0  111111 11   122222       3


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ..|++|++||......   .+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        77 ~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            5899999999753211   11   2334566766555555554433   23467777764

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.49  E-value=0.00011  Score=61.42  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC------CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE------DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~------~aDvVIi  102 (256)
                      ++|.|+||+|++|..++..|+++|.  +|+++|.+.. .........+    +.   ...++.++++      ..|++|+
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~~~~~~~~~D----~~---~~~~~~~~~~~~~~~~~~d~li~   72 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-GEDLIYVEGD----VT---REEDVRRAVARAQEEAPLFAVVS   72 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-SSSSEEEECC----TT---CHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-ccceEEEeCC----CC---CHHHHHHHHHHHHhhCCceEEEE
Confidence            5799999999999999999999998  9999998632 1000000000    00   0012223333      7899999


Q ss_pred             ecCCCCCCC------C----CHHHHHHHHHHHHHHHHHHHHHhC---------CCcEEEEecC
Q 025206          103 PAGVPRKPG------M----TRDDLFNINAGIVKDLCSAIAKYC---------PNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~g------~----~r~d~~~~N~~i~~~i~~~i~~~~---------p~~~iiv~tN  146 (256)
                      +||......      +    +..+.+..|+.....+.+.+.+..         +.+.+|++|.
T Consensus        73 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS  135 (242)
T 1uay_A           73 AAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTAS  135 (242)
T ss_dssp             CCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECC
T ss_pred             cccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCC
Confidence            998653221      1    223456667666655665554432         1237777663

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.48  E-value=0.00042  Score=59.10  Aligned_cols=114  Identities=17%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LG-------QA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------ea   93 (256)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|++.|.+..  .....++..     ++..+..+ +|   ++       +.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998732  222222211     12222111 11   11       22


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      +...|++|++||......   .+   ....+..|+.-...+.+.+.++- ..+.||++|..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            347899999999754221   12   23456778777777777766553 34677777653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.48  E-value=0.0017  Score=55.13  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=67.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC---Cc---ccc-----
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN---DQ---LGQ-----   92 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t---~d---~~e-----   92 (256)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|++.  +.....++...... .+..+..+   ++   +.+     
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSC-CCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCC-CceEEEEecccCCHHHHHHHHHHH
Confidence            3456899999999999999999999998  999999873  22223333321110 11111111   11   111     


Q ss_pred             --ccCCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           93 --ALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 --al~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                        .+...|++|++||....  +  ..+.   ...+..|+.....+    .+.+.+. ..+.||++|.
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  152 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSS  152 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECC
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECC
Confidence              22378999999996321  1  1222   23456665544444    4444433 3466777764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.48  E-value=0.00022  Score=60.63  Aligned_cols=111  Identities=18%  Similarity=0.258  Sum_probs=67.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCccc---cccCCCCEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQLG---QALEDSDVV  100 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~~---eal~~aDvV  100 (256)
                      ..+.++|.|+||+|.+|..++..|+.+|.  +|++.|++.  ....++.      .+....+ ..+++   +.+.+.|++
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~l   85 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRSG------HRYVVCDLRKDLDLLFEKVKEVDIL   85 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHTC------SEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEE
Confidence            33456899999999999999999999998  999999864  1111221      1111100 11222   234489999


Q ss_pred             EEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206          101 IIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            99998653211   12   2233445543    3455666666554 356777764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.47  E-value=0.0012  Score=56.89  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Ccc---cc------ccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQL---GQ------ALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d~---~e------al~   95 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|... ......++....  .++..+..+ +|.   .+      ...
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            345789999999999999999999998  999999543 222333333221  123322211 121   11      123


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||......   .+   ....+..|+.-.    +.+.+.+.+.. .+.||++|.
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  165 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS  165 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            7899999999754221   12   223455665444    44444555444 456777764

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.47  E-value=0.00063  Score=57.76  Aligned_cols=114  Identities=16%  Similarity=0.330  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+.  +.....++..     ++..+..+ +   ++++.+      
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~   80 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSK   80 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999998  899999873  2222222211     12222211 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhC---CCcEEEEecCC
Q 025206           95 -EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYC---PNAIVNMISNP  147 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~---p~~~iiv~tNP  147 (256)
                       ...|++|++||....++    .+.   ...+..|+.    +.+.+.+.+.+..   ..+.|++++..
T Consensus        81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence             37899999999754222    122   223455543    4555556655543   24567777643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.46  E-value=0.0001  Score=57.38  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+||+|||+ |.+|..++..|...|.  +|+++|++..+  ..+.++.     ..+..   ..++.++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            469999998 9999999998888886  69999987422  2222222     11211   3466778899999999876


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      .+. +-...                  ....|..+++.+++|.+.
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccC
Confidence            542 11000                  112357789999999883

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.46  E-value=0.00073  Score=57.91  Aligned_cols=107  Identities=19%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Cccccc-------cC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQA-------LE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~ea-------l~   95 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.|++...+           .++..+..+    .+++++       +.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   73 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGE-----------AKYDHIECDVTNPDQVKASIDHIFKEYG   73 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCS-----------CSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccC-----------CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999998  999999863220           001111100    111222       23


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      ..|++|.+||......   .+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        74 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  133 (264)
T 2dtx_A           74 SISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISS  133 (264)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            7999999998753211   12   2344566766544444444433   23467777764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.46  E-value=0.00025  Score=61.45  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..  .....++.     .++..+..+ +   ++++++      
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999998  9999998732  22222221     112222111 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                       ...|++|++||.....   ..+   ....+..|+.-...+.+.+.++   ...+.||++|.
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  160 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTS  160 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence             3789999999965321   112   2234556765544444444322   23457777764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.45  E-value=0.00054  Score=59.13  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-------cc
Q 025206           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~--VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------al   94 (256)
                      .+++.|+||+|+  +|..++..|+..|.  +|++.|.+.......++......  +..+..+ ++   +.+       .+
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNP--AAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCC--SEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCC--ceEEEeecCCHHHHHHHHHHHHHHc
Confidence            458999999867  99999999999998  99999987633333444322111  2212111 11   112       22


Q ss_pred             CCCCEEEEecCCCCCC---C-----CC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g-----~~---r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      ...|++|++||.....   +     .+   ....+..|+.....+.+.+.++-  ..+.||++|.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS  166 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTY  166 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            4679999999975321   1     11   22345666555555555544331  2467777764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.45  E-value=0.00012  Score=62.32  Aligned_cols=112  Identities=18%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+.  +.....++...     ...+.. -+   ++++.+      
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~   80 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDE   80 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999873  22222223221     111110 11   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+.-.    +.+.+.+.+.. .+.||++|.
T Consensus        81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS  142 (248)
T 3op4_A           81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGS  142 (248)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             37999999999754221   12   223455665444    44444444443 456777763

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.45  E-value=0.001  Score=56.64  Aligned_cols=115  Identities=22%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+.  +.....++.+..  .++..+..+ +|   +++.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446889999999999999999999998  899999873  222233333221  123322211 11   22222      


Q ss_pred             -CCCCEEEEecCCCCCC--CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~--g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....  ..+.   ...+..|+.-...+.    +.+.+. ..+.||++|.
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  147 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS  147 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence             3789999999875322  1222   234556655444444    444443 3567777764

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.44  E-value=0.00068  Score=56.52  Aligned_cols=110  Identities=18%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l~   95 (256)
                      ++|.|+||+|++|..++..|+.+|.  +|++.|.+..  .....++.      .+..+..+ +   ++.++       +.
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4699999999999999999999998  9999998732  11111121      11111111 1   12222       23


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ..|++|++||......   .+   ..+.+..|+...    +.+.+.+.+. ..+.||++|..
T Consensus        78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            7899999998653211   12   233456665544    4455555443 34567777643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.44  E-value=0.00069  Score=57.24  Aligned_cols=114  Identities=19%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      .+++.|+||+|.+|.+++..|+++|.  +|++.|...   .+....++....  .++..+..+ +   ++++.+      
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999998  999988753   222223333221  122222211 1   122223      


Q ss_pred             -CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....   ..+.   ...+..|+.....+    .+.+.+.. .+.||++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             3789999999975321   1122   23456675544444    44445443 456776663

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.44  E-value=0.0017  Score=56.47  Aligned_cols=116  Identities=20%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHHHHhcccCCCcEEEEecC-Cc---ccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGN-DQ---LGQ------   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~dl~~~~~~~~v~~~~~t-~d---~~e------   92 (256)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..    ......+.+..  .++..+..+ +|   +++      
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            446899999999999999999999998  9999988621    11112222211  122222111 11   111      


Q ss_pred             -ccCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           93 -ALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        93 -al~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                       .+...|++|++||.....+    .+   ....+..|+.-...+.+.+.+.- ..+.||++|.
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence             2347899999999743211    12   23456778777777787777665 3467777764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.43  E-value=0.00061  Score=58.89  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Ccc----c-------c
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQL----G-------Q   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~----~-------e   92 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.+++.  ......++.... ..++..+..+ ++.    .       +
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999873  233334444322 1233333211 121    1       1


Q ss_pred             ccCCCCEEEEecCCC
Q 025206           93 ALEDSDVVIIPAGVP  107 (256)
Q Consensus        93 al~~aDvVIi~ag~~  107 (256)
                      .+...|++|++||..
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            124799999999975

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.43  E-value=0.001  Score=57.17  Aligned_cols=115  Identities=16%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      ..+++.|+||+|.+|..++..|+..|.  +|++.|++.  +.....++....  ..+..+..+ ++   +.+.       
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDT   78 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  899999873  233333443221  122222111 11   1122       


Q ss_pred             cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|.+||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        79 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           79 WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            237899999999753221   122   23455564443    45555555443 466777764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.43  E-value=0.00018  Score=61.43  Aligned_cols=115  Identities=21%  Similarity=0.223  Sum_probs=66.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hh---HHHHHhcccCCCcEEEEecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g---~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++..  ..   ...|+.+..   .++..  -....+.+...|++|
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~---~v~~~--~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTE---QVEQA--YKEIEETHGPVEVLI   92 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHH---HHHHH--HHHHHHHTCSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHH---HHHHH--HHHHHHHcCCCCEEE
Confidence            345799999999999999999999998  9999988632  11   001111100   00000  001112234579999


Q ss_pred             EecCCCCCC------CCCHHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCCCC
Q 025206          102 IPAGVPRKP------GMTRDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       102 i~ag~~~~~------g~~r~d~~~~N~~i~~~i~----~~i~~~~p~~~iiv~tNPvd  149 (256)
                      .+||.....      .++....+..|+.....+.    +.+.+.. .+.||++|....
T Consensus        93 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~  149 (253)
T 2nm0_A           93 ANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVG  149 (253)
T ss_dssp             EECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhh
Confidence            999875321      1234455667765544444    4444433 467777775433

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.43  E-value=0.0013  Score=56.69  Aligned_cols=116  Identities=20%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-Cc---ccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ---LGQ-------   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-------   92 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+..   .....++....  .++..+..+ ++   +.+       
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998742   11222333211  122222211 11   111       


Q ss_pred             ccCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      .+...|++|++||......   .+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            2347899999999753211   12   23456778777777777776662 4467777764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.42  E-value=0.0012  Score=56.88  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=33.9

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ...+.++|.|+||+|.+|..++..|+.+|.  +|+++|.+.
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            334556899999999999999999999998  999999873

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.0015  Score=56.46  Aligned_cols=116  Identities=15%  Similarity=0.220  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      ..+++.|+||+|.+|..++..|+..|.  +|++.|.+.   +.....++.... ..++..+..+ ++   +.+.      
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            445789999999999999999999998  999999852   222223333211 1123322211 11   2222      


Q ss_pred             -cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 -LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +...|++|++||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             237899999999753221   122   23455665444    44444445543 456777764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.41  E-value=0.00035  Score=59.69  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=70.5

Q ss_pred             CceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEec-CCc---ccccc------
Q 025206           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal------   94 (256)
                      .+++.|+||+  |.+|..++..|+.+|.  +|++.|.+. ......++......  ...+.. -++   +.+.+      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGS--DIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCC--cEEEEccCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999998  999999874 22222333221100  011111 111   22222      


Q ss_pred             -CCCCEEEEecCCCCC-----C--C-CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                       ...|++|++||....     +  . .+   ....+..|+.....+.+.+.++- +.+.||++|.
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence             267999999997532     1  0 12   23456778777777777776653 2367777764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.41  E-value=0.0012  Score=56.09  Aligned_cols=114  Identities=13%  Similarity=0.192  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch----hHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~----g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|.+...    ....++....  .++..+..+ ++   +.+++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999998  89999987422    2222333211  123322211 12   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+....+.||++|.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence             37999999998753211   12   22345566543    4445555554444366777764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.41  E-value=0.0014  Score=57.13  Aligned_cols=129  Identities=11%  Similarity=0.061  Sum_probs=72.9

Q ss_pred             cccccccCCCCC-CCCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec-CC
Q 025206           14 KPAGARGYSSES-VPDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-ND   88 (256)
Q Consensus        14 ~~~~~~~~~~~~-~~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~-t~   88 (256)
                      ++.|..+....+ .+.+++.|+||+|  .+|..++..|+..|.  +|++.|.+.. .....++......  +..+.. -+
T Consensus        15 ~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dv~   90 (296)
T 3k31_A           15 QTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGV--KLTVPCDVS   90 (296)
T ss_dssp             ------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTC--CEEEECCTT
T ss_pred             cccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCC--eEEEEcCCC
Confidence            444555543322 2446789999976  999999999999998  8999998742 1122222211100  111111 11


Q ss_pred             ---cccccc-------CCCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           89 ---QLGQAL-------EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        89 ---d~~eal-------~~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                         ++++++       ...|++|++||....     +  ..+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus        91 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A           91 DAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence               122222       378999999997532     1  122   23456778777777777776654 3567777764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.41  E-value=0.00027  Score=61.01  Aligned_cols=115  Identities=12%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++....  .++..+..+ +   ++.+.+      
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999873  233333443221  112222111 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+.   ...+..|+.-.    +.+.+.+.+.. .+.||++|.
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             37999999999753221   122   23456665444    44455555443 356777764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.00016  Score=61.98  Aligned_cols=107  Identities=19%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----Ccccc-------ccCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQ-------ALED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~e-------al~~   96 (256)
                      .+++.|+||+|.+|.+++..|+.+|.  +|++.|.+.......         .+..+..+    .++.+       .+..
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADP---------DIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSST---------TEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccC---------ceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            45789999999999999999999998  999999873110000         11111100    11122       2338


Q ss_pred             CCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||......   .+   ....+..|+.....+    .+.+.+.. .+.+|+++.
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  155 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITT  155 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            999999999753221   12   233455665544444    44444443 456666654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.40  E-value=0.0017  Score=55.64  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.  +.....++.... ..++..+..+ ++   +.+++      
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  222223331110 1122222211 11   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+.   ...+..|+.....+.+.    +.+. ..+.||++|.
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  158 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGS  158 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence             37899999999753211   122   23455665555444444    4332 2456777664

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.00047  Score=59.08  Aligned_cols=112  Identities=12%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---cc-------cccCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QALED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------eal~~   96 (256)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+.... ...+.+..    +..+.. -++   +.       +.+..
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~----~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG----AVALYGDFSCETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT----CEEEECCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC----CeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            35789999999999999999999998  899999874321 12222211    111110 011   11       22347


Q ss_pred             CCEEEEecCCCCCCC--CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG--MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g--~~r---~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tN  146 (256)
                      .|++|++||......  .+.   ...+..|+.....+.+.+.++   ...+.||++|.
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS  157 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISD  157 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            899999999654322  111   234566655444444443322   23467777764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.40  E-value=0.00015  Score=61.56  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hh---HHHHHhcccCCCcEEEEecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g---~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.|.+..  ..   ...|+.+..   .++..  -....+.+...|++|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHH---HHHHH--HHHHHHHcCCCCEEE
Confidence            446899999999999999999999998  9999998731  11   011111100   00000  001112234689999


Q ss_pred             EecCCCCCC---CCC---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCC
Q 025206          102 IPAGVPRKP---GMT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       102 i~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~----~i~~~~p~~~iiv~tNPvd  149 (256)
                      ++||.....   ..+   ....+..|+.....+.+    .+.+. ..+.||++|....
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~  143 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSG  143 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHhh
Confidence            999875321   112   23345566554444444    44333 3467777775433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.39  E-value=0.00078  Score=55.97  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-ccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-ALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-al~~aDvVIi~  103 (256)
                      |||.|+|+ |.+|+.++..|...|+  +|+++|.++..  ..++.+.. .  ...+.++ ++   +.+ .+++||+||++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~--~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-K--ATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-S--SEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-C--CeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            68999998 9999999999999998  99999987422  12222110 0  1111111 11   233 37899999998


Q ss_pred             cC
Q 025206          104 AG  105 (256)
Q Consensus       104 ag  105 (256)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.39  E-value=0.0007  Score=57.63  Aligned_cols=116  Identities=15%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+...   ....++.... ..++..+..+ +|   +.+++     
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  89999987422   2222232110 1122222111 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        80 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence              37999999999753211   12   2334556655    4455555555443 456777764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.39  E-value=0.0018  Score=55.72  Aligned_cols=116  Identities=14%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|++.  +.....++..... ...+..+..+ ++   +++++     
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  2222233332110 0023322211 11   12222     


Q ss_pred             --CCCCEEEEecCCCCCCC-------CC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG-------MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g-------~~---r~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......       .+   ....+..|+.....+    .+.+.+..  +.||++|.
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence              36899999998653211       11   223455565444444    44443333  67777764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.39  E-value=0.0015  Score=56.15  Aligned_cols=113  Identities=26%  Similarity=0.391  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++.     .++..+..+ +|   +++.       
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999998  9999998732  22222221     122222211 11   1122       


Q ss_pred             cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      +...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~  161 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSI  161 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence            247999999999753211   11   23345566555    566666665544 4567777653

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.38  E-value=0.00058  Score=57.64  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc---cccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG---QALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~---eal~~aDv   99 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+...  ..++.+.  . ++..+..+ ++   ++   +.+...|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~--~-~~~~~~~D~~~~~~~~~~~~~~~~id~   77 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKY--P-GIQTRVLDVTKKKQIDQFANEVERLDV   77 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGS--T-TEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhc--c-CceEEEeeCCCHHHHHHHHHHhCCCCE
Confidence            345899999999999999999999998  99999987311  1111110  0 22222211 11   11   22457899


Q ss_pred             EEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206          100 VIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       100 VIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      +|++||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  134 (246)
T 2ag5_A           78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSV  134 (246)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEech
Confidence            999998753211   122   23445565444    44444444443 4567777653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.0015  Score=55.52  Aligned_cols=119  Identities=15%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t-~d---~~ea------   93 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++...... ..+..+..+ ++   +.+.      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999873  22223333321100 122222111 12   1112      


Q ss_pred             -cCCCCEEEEecCCCCCCC-CC----HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           94 -LEDSDVVIIPAGVPRKPG-MT----RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~g-~~----r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                       +...|++|.+||...... +.    ....+..|+.    +.+.+.+.+.+.. .+.||+++...
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  147 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRA  147 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHH
Confidence             236899999999753221 11    1234455644    3444455445443 46777776543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.37  E-value=0.0028  Score=54.10  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+.  +.....++....  .++..+..+ +|   +.+.       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999998  999999873  233333343221  122222211 11   2222       


Q ss_pred             cCCCCEEEEecCCCCCCC----CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|++||.....+    .+.   ...+..|+...    +.+.+.+.+..  +.||++|.
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            237899999998642211    122   23455565443    44444444433  67777764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.37  E-value=0.0038  Score=53.50  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++....  ..+..+..+ ++   +.++       
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  999999873  222223332211  123222211 11   1122       


Q ss_pred             c-CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           94 L-EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        94 l-~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      + ...|++|++||......   .+   ....+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  159 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  159 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence            2 57999999999753211   12   223345565444    44444444443 4567777643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.37  E-value=0.002  Score=54.70  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccccC-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~-----   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.  +.....++....  .++..+..+ ++   +.+.++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            345789999999999999999999998  999999874  333334443321  123322211 11   222232     


Q ss_pred             -CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 -DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 -~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ..|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGA  142 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence             6799999999754211   122   234555644    4455555555554 456666653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.36  E-value=0.0015  Score=56.44  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Ccccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+.  +.....++....  ..+..+..+    .++.+.+      
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345789999999999999999999998  999999874  333334443321  122222211    1112222      


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS  168 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGS  168 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            37899999999753221   122   234556644    4444555555443 467777764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.36  E-value=0.0019  Score=55.53  Aligned_cols=116  Identities=23%  Similarity=0.271  Sum_probs=69.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC------------C---chhHHHHHhcccCCCcEEEEecC-Cc-
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA------------N---TPGVAADVGHINTRSEVAGYMGN-DQ-   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~------------~---~~g~~~dl~~~~~~~~v~~~~~t-~d-   89 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|++            .   +.....++....  .++..+..+ +| 
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCH
Confidence            345789999999999999999999998  99999983            1   111122222211  123322211 12 


Q ss_pred             --cccc-------cCCCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           90 --LGQA-------LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 --~~ea-------l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        +.+.       +...|++|++||......   .+.   ...+..|+.    ..+.+.+.+.+..+.+.||++|.
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              1112       246899999999754321   122   234555644    45556666766665677887764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.35  E-value=0.0025  Score=55.52  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--------------chhHHHHHhcccCCCcEEEEecC-Cc--
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYMGN-DQ--   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--------------~~g~~~dl~~~~~~~~v~~~~~t-~d--   89 (256)
                      +.+.+.|+||+|.+|..++..|+..|.  +|+++|.++              +.....++....  .++..+..+ ++  
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFD  102 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHH
Confidence            446789999999999999999999998  999999761              111122232211  123322211 11  


Q ss_pred             -cccc-------cCCCCEEEEecCCCCCCC----CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           90 -LGQA-------LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 -~~ea-------l~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +.++       +...|++|++||......    .+.   ...+..|+..    .+.+.+.+.+....+.||++|.
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             2222       237999999998653221    122   3345666543    4444555555455677777764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.35  E-value=0.00099  Score=56.51  Aligned_cols=110  Identities=12%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---ccccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l~   95 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|.+..  .....++..     .+..+..+ +   ++.+.       +.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3688999999999999999999998  9999998732  222222211     12222111 1   11122       23


Q ss_pred             CCCEEEEecCCCC--CC--CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPR--KP--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~--~~--g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||...  .+  ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            7899999999752  11  112   22345566444    445555554443 456777764

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.34  E-value=0.00021  Score=60.64  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---ccccc-------cC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQA-------LE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~ea-------l~   95 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+...      ....    +..... -+   ++.++       +.
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~~----~~~~~~D~~d~~~~~~~~~~~~~~~g   73 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQYP----FATEVMDVADAAQVAQVCQRLLAETE   73 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCCS----SEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcCC----ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999998  99999987321      0000    111110 01   12222       23


Q ss_pred             CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|++||.....   ..+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  133 (250)
T 2fwm_X           74 RLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVAS  133 (250)
T ss_dssp             CCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            799999999875321   112   233455665444    44444445544 456666664

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.33  E-value=0.0015  Score=56.46  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=69.7

Q ss_pred             CceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEec-CC---cccccc------
Q 025206           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG-ND---QLGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal------   94 (256)
                      .+++.|+||+  |.+|..++..|+.+|.  +|++.|.+. ......++......  +..+.. -+   ++.+++      
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGS--DLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999998  999999874 22222333221100  111111 11   122222      


Q ss_pred             -CCCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                       ...|++|++||....     +  ..+   ....+..|+.....+.+.+.++-  ..+.||++|.
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence             378999999997532     1  122   23456778777777777766553  2467777764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.00087  Score=57.98  Aligned_cols=117  Identities=15%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-C---ccccccC-----
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-----   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~-----   95 (256)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.   +.....++....  .++..+..+ +   ++.++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35688999999999999999999998  999999742   222233333221  123322211 1   2222233     


Q ss_pred             --CCCEEEEecCCCC---CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCC--CcEEEEecCCC
Q 025206           96 --DSDVVIIPAGVPR---KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCP--NAIVNMISNPV  148 (256)
Q Consensus        96 --~aDvVIi~ag~~~---~~--g~~r---~d~~~~N~~----i~~~i~~~i~~~~p--~~~iiv~tNPv  148 (256)
                        ..|++|++||...   .+  ..+.   ...+..|+.    ..+.+.+.+.+...  .+.||++|...
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~  173 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS  173 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence              7899999999731   11  1122   223344544    44556666655542  56777776533

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.32  E-value=0.0027  Score=54.31  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++.     .++..+..+ +|   +.+++      
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998732  11111111     122222211 11   22222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd  149 (256)
                       ...|++|++||......   .+   ....+..|+.....+.+.+.++- ..+.||++|....
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence             35799999998653211   12   23356678777766777666553 2467777775543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.31  E-value=0.00021  Score=61.54  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH------HHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------AADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~------~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +.++|.|+||+|.+|..++..|++.|.  +|++.|.+.....      ..|+.+..   .+...  -..+.+.+...|++
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iD~l   85 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEE---EVKEA--VEKTTKKYGRIDIL   85 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHH---HHHHH--HHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHH---HHHHH--HHHHHHHcCCCCEE
Confidence            456899999999999999999999998  9999998742110      01111100   00000  00111223478999


Q ss_pred             EEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206          101 IIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |++||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        86 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  140 (269)
T 3vtz_A           86 VNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIAS  140 (269)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            99999753221   122   23455665444    44444454443 456777764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.31  E-value=0.00065  Score=57.35  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-e--CCC--chhHHHHHhcccCCCcEEEEecCCcccc-------ccCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-D--IAN--TPGVAADVGHINTRSEVAGYMGNDQLGQ-------ALED   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D--~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~e-------al~~   96 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++. |  .+.  +.....++ .   .  .+.. ...++.+       .+..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~--~~~~-~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---G--TIAL-AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---T--EEEC-CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---C--Cccc-CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999998  99999 5  763  12222222 1   1  1111 1122222       2347


Q ss_pred             CCEEEEecCCCCC---C---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRK---P---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~---~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||....   .   ..+   ....+..|+...    +.+.+.+.+. ..+.||++|.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            8999999996533   1   112   223456665444    4444444443 3467777764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.30  E-value=0.00077  Score=58.41  Aligned_cols=114  Identities=17%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---cccccc---CCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQAL---EDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal---~~aDv   99 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|++.....  ++.+.. ..++..+..+ +   ++.+++   ...|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            346899999999999999999999998  9999998732211  111110 1123332211 1   122233   36799


Q ss_pred             EEEecCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          100 VIIPAGVPRKP----GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       100 VIi~ag~~~~~----g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +|++||.....    .+.....+..|+.....+.+.+.+.-.. .||++|.
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            99999974322    1223456788888888888887766543 5666654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.30  E-value=0.0015  Score=54.83  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec---CCccc-------cccCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLG-------QALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~-------eal~~aD   98 (256)
                      +++.|+||+|.+|..++..|+.+|.  +|++.|++... ...++.       +.....   ..++.       +.+...|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~~g~id   72 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-------AVPLPTDLEKDDPKGLVKRALEALGGLH   72 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-------CEEEECCTTTSCHHHHHHHHHHHHTSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-------cEEEecCCchHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999998  99999987432 222221       111110   01111       1235799


Q ss_pred             EEEEecCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           99 VVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        99 vVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++|++||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        73 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           73 VLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            999999865321   112   22344555444    444555555443 456777764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.30  E-value=0.002  Score=56.25  Aligned_cols=116  Identities=13%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.  +.....++..... ..++..+..+ ++   +.+++     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999873  2222233322110 0023322211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC-----CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG-----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g-----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......     .+   ....+..|+...    +.+.+.+.+..  +.||++|.
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence              37899999998643211     12   223455665444    44444444332  67777764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.29  E-value=0.0021  Score=54.79  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|.+++..|+++|.  +|++. +.+.  +.....++.+..  .++..+..+ ++   +++.+     
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDE   78 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999998  88886 5552  222233333221  123322211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i----~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+.   ...+..|+.....+    .+.+.+. ..+.||++|.
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS  141 (258)
T 3oid_A           79 TFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISS  141 (258)
T ss_dssp             HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence              35699999998643211   122   23456665544444    4444433 3466777764

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.29  E-value=0.0034  Score=53.58  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----chhHHHHHhcccCCCcEEEEecC-Cc---ccccc---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL---   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal---   94 (256)
                      +.+.+.|+||+|.+|..++..|+.+|.  +|++.|...     +.....++....  .++..+..+ +|   +.+.+   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence            345789999999999999999999998  899987652     122233333221  223322211 11   22222   


Q ss_pred             ----CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhC
Q 025206           95 ----EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus        95 ----~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~  163 (256)
                          ...|++|++||......   .+   -...+..|+.....+.+.+.++- +.+.||+++....       ..    +
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~-------~~----~  154 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL-------AA----Y  154 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH-------HH----H
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh-------cc----C
Confidence                37899999999753221   12   23346678777777777766543 4567777764322       11    1


Q ss_pred             CCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                       .+..-.++.+..-...+-+.++..++-.--.|.+..-|
T Consensus       155 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG  192 (262)
T 3ksu_A          155 -TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPG  192 (262)
T ss_dssp             -HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEEC
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeC
Confidence             23334556655445567778888885332233334444

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.29  E-value=0.0025  Score=54.51  Aligned_cols=115  Identities=17%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+.+.|+||+|.+|..++..|+..|.  .|++.|.+..   ......+....  .++..+..+ +|   +++++     
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLA   99 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999998  8999986532   11222222211  123322211 12   12222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+.   ...+..|+...    +.+.+.+.+. ..+.||++|.
T Consensus       100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence              37999999999753221   122   23455665444    4444444433 3467777764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.28  E-value=0.001  Score=56.23  Aligned_cols=117  Identities=21%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      +.++|.|+||+|.+|..++..|+++|.  +|++.|.. .  ......++.....  ++..+..+ ++   +++.      
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGF--DFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--eeEEEecCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999997  88888843 2  2222333332221  12222111 11   2222      


Q ss_pred             -cCCCCEEEEecCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 025206           94 -LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                       +...|++|++||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|...
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  152 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVN  152 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchh
Confidence             23789999999975422   122   23345666554    455555555554 35677776543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.0018  Score=56.10  Aligned_cols=115  Identities=16%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l   94 (256)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++....  .++..+..+ +|   ++++       +
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998  999999873  233333443321  123222211 11   1222       2


Q ss_pred             CCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ...|++|++||....  +  ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~  166 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSI  166 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcCh
Confidence            379999999997432  1  1222   23456665444    44444445543 4667777653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.0019  Score=55.96  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccc-------c
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQA-------L   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~ea-------l   94 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.  +.....++....  .++..+..+ +   ++.+.       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999998  899999873  223333333211  122222111 1   12222       2


Q ss_pred             CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ...|++|++||.....+    .+   -...+..|+.-.    +.+.+.+.+. ..+.||++|..
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  146 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSF  146 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence            37899999999642211    12   223455665444    4444444443 34667777643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.27  E-value=0.002  Score=56.73  Aligned_cols=117  Identities=14%  Similarity=0.222  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----------c---hhHHHHHhcccCCCcEEEEecC-Cc--
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----------T---PGVAADVGHINTRSEVAGYMGN-DQ--   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----------~---~g~~~dl~~~~~~~~v~~~~~t-~d--   89 (256)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|.++           .   ......+...  ..++..+..+ ++  
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLA  120 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            345789999999999999999999998  999998751           0   1111112211  1123322211 11  


Q ss_pred             -ccccc-------CCCCEEEEecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 025206           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        90 -~~eal-------~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                       +.+.+       ...|++|.+||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus       121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence             22222       3789999999975321   1222   234556654    444555555555556777777653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.27  E-value=0.003  Score=54.61  Aligned_cols=119  Identities=14%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---------hhHHHHHhcccCCCcEEEEecC-Cc---cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYMGN-DQ---LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---------~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea   93 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+..         .....++....  .++..+..+ ++   +.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAA   83 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHH
Confidence            446889999999999999999999998  9999998731         12223333221  123222211 11   2222


Q ss_pred             c-------CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCCC
Q 025206           94 L-------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPVN  149 (256)
Q Consensus        94 l-------~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tNPvd  149 (256)
                      +       ...|++|++||.....   ..+   -...+..|+.-...+.+.+.+.-   ..+.||++|....
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence            2       3899999999975321   112   23345678777766777665553   3467888875443

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.27  E-value=0.0018  Score=55.47  Aligned_cols=114  Identities=17%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-Cc---ccccc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal------   94 (256)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.+.+..   +.....+....  .++..+..+ ++   +.+.+      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            45799999999999999999999998  9999998531   22222232221  123322211 11   12222      


Q ss_pred             -CCCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence             37999999999754321   12   2334555644    3444555555443 356666663

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.26  E-value=0.00019  Score=64.35  Aligned_cols=64  Identities=16%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.+.....       .    ...   ..++.+.+++||+|+++.
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEec
Confidence            445679999998 9999999999998887  8999998742110       1    111   235667889999999986


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      .
T Consensus       224 P  224 (333)
T 3ba1_A          224 P  224 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0016  Score=56.43  Aligned_cols=117  Identities=13%  Similarity=0.150  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------   93 (256)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|.+.  +.....++...... .+..+..+ +|   +.+.       
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTGN-IVRAVVCDVGDPDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999873  22223333221111 11222111 11   1222       


Q ss_pred             cCCCCEEEEecCCCCCCC----CCH---HHHHHHHHHH----HHHHHHHHHHhC-CCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAGI----VKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~i----~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      +...|++|++||.....+    .+.   ...+..|+.-    .+.+.+.+.+.. ..+.||++|.
T Consensus       109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A          109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            236799999999753221    122   2345556443    556666666554 3577777764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.0011  Score=59.57  Aligned_cols=95  Identities=23%  Similarity=0.328  Sum_probs=60.0

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.+|+.+|..+...|.  +|..+|......      .     ....   ..++.+.+++||+|+++
T Consensus       167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~------~-----~~~~---~~sl~ell~~aDvVil~  229 (340)
T 4dgs_A          167 HSPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG------V-----DWIA---HQSPVDLARDSDVLAVC  229 (340)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT------S-----CCEE---CSSHHHHHHTCSEEEEC
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc------c-----Ccee---cCCHHHHHhcCCEEEEe
Confidence            3445679999998 9999999999998888  999999874320      0     0111   23567889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIV-KDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~-~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      ....  + ++        ..++ +   +.+....|++++|+++.  ++|
T Consensus       230 vP~t--~-~t--------~~li~~---~~l~~mk~gailIN~aRG~vvd  264 (340)
T 4dgs_A          230 VAAS--A-AT--------QNIVDA---SLLQALGPEGIVVNVARGNVVD  264 (340)
T ss_dssp             C---------------------CH---HHHHHTTTTCEEEECSCC----
T ss_pred             CCCC--H-HH--------HHHhhH---HHHhcCCCCCEEEECCCCcccC
Confidence            5321  1 00        1111 2   22334457899999873  455

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.25  E-value=0.00019  Score=59.83  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|.+..    .|+.+..   .++      .+.+.+...|++|++||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence            45788999999999999999999997  8999987532    2333211   010      1112345789999999965


Q ss_pred             CCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          108 RKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       108 ~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      ...+    .+   ....+..|+.-...+.+.+.++- +.+.|+++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            2211    22   23346778777777777776554 3466777764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.24  E-value=0.001  Score=56.57  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             CCCCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-C---cccccc---
Q 025206           25 SVPDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-D---QLGQAL---   94 (256)
Q Consensus        25 ~~~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal---   94 (256)
                      ..+.++|.|+||+  |.+|..++..|+.+|.  +|++.|.+. ......++.....  .+..+..+ +   ++.+.+   
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~   86 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASL   86 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            3355789999998  8999999999999998  999999873 2222222321111  11111111 1   122222   


Q ss_pred             ----CCCCEEEEecCCCCC-----C--C-CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 ----EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 ----~~aDvVIi~ag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                          ...|++|++||....     +  . .+   ....+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                367999999987532     1  1 22   23345667666666777665543 3456777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.24  E-value=0.031  Score=49.88  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---------hhHHHHHhcccCCCcEEEEecC-Cc---cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYMGN-DQ---LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---------~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea   93 (256)
                      +.+.+.|+||+|.+|..++..|++.|.  +|++.|.+..         .....++....  .++..+..+ +|   ++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            345789999999999999999999998  9999998731         12233333221  122222211 11   2222


Q ss_pred             c-------CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCC
Q 025206           94 L-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (256)
Q Consensus        94 l-------~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd  149 (256)
                      +       ...|++|++||......   .+   -...+..|+.-...+.+.+..+   ...+.||++|.+..
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            2       38999999999743221   12   2335667766655555555433   23467888886654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.24  E-value=0.002  Score=55.31  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-C---cccccc------
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-D---QLGQAL------   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++..      +..+..+ +   ++++.+      
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~   79 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRR   79 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998732  111122211      1211111 1   122222      


Q ss_pred             -CCCCEEEEecCCCCCCC----CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 025206           95 -EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (256)
Q Consensus        95 -~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i----~~~~p~~~iiv~tN  146 (256)
                       ...|++|++||.....+    .+   ....+..|+.....+.+.+    .+.  .+.||++|.
T Consensus        80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS  141 (270)
T 1yde_A           80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  141 (270)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence             37899999998643211    12   2334566655444444443    333  356777763

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.23  E-value=0.0008  Score=57.37  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=70.2

Q ss_pred             CCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Cc---cccccC----
Q 025206           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE----   95 (256)
Q Consensus        27 ~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~----   95 (256)
                      +.+++.|+||+  |.+|..++..|+.+|.  +|++.|.+. ......++.... . .+..+..+ ++   ++++++    
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~-~-~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEAL-G-GALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHT-T-CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-C-CcEEEECCCCCHHHHHHHHHHHHH
Confidence            34589999998  8999999999999998  899999874 222223332211 0 11111111 11   222232    


Q ss_pred             ---CCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           96 ---DSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        96 ---~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                         ..|++|++||....     +  ..+   ....+..|+.....+.+.+.++- +.+.||++|.
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence               68999999997532     1  112   23456778777777777765542 2357777764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.21  E-value=0.0027  Score=55.22  Aligned_cols=116  Identities=10%  Similarity=0.073  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCC--cHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~--VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      +.+++.|+||+|+  +|..++..|+..|.  +|++.|.+. ......++.....  .+..+..+ +|   +++.      
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            4457899999888  99999999999998  899999873 1112222221110  12222111 11   1222      


Q ss_pred             -cCCCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           94 -LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        94 -l~~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                       +...|++|++||....     +  ..+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence             2478999999997531     1  112   23456677766666666666554 3567777764

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.20  E-value=0.00021  Score=64.54  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCC-----CccEEEEEeCCCchhHHHHHhcccCC--CcEEEEecCCccccccCCCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~-----~~~eV~LiD~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aD   98 (256)
                      |+++||+|+||+|.+|..+...|..++     .+ ||+++...+..+...+-.+..+.  ..+...  ..+ .++++++|
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~D   82 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVE--PTE-AAVLGGHD   82 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCE--ECC-HHHHTTCS
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeec--cCC-HHHhcCCC
Confidence            356799999999999999999998877     33 67776432211221221121111  112211  112 24577999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      +||++.|...                .+++++.+ +.  .+++|-.|+|-
T Consensus        83 vVf~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           83 AVFLALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEEECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEEECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            9999975421                24555555 33  35777788774

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.20  E-value=0.0026  Score=54.64  Aligned_cols=115  Identities=22%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+.+.|+||+|.+|..++..|+..|.  +|++.|...   ......++....  .++..+..+ +|   +++++     
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345788999999999999999999998  899988842   222223333221  122222211 12   22222     


Q ss_pred             --CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  165 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIAS  165 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence              37899999999754321   12   22345556544    444444454443 456776763

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.20  E-value=0.00016  Score=65.19  Aligned_cols=71  Identities=24%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|||.|+|| |+||+.++..|.+. .  +|.+.|++...  ...+.+..  ..+..-. ....+.+.++++|+||.+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~--~~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNEN--LEKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHH--HHHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHH--HHHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            4689999998 99999999888654 4  89999987321  11122111  0111100 11245667899999999874

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.29  E-value=5.3e-05  Score=63.01  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..|||+|||+ |.+|..++..|...|+  +|.++|.+..   ...+...    .++.   . +..++++++|+||++.
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            4579999998 9999999999998887  8999987632   1112111    1211   2 4456788999999985

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.20  E-value=0.0052  Score=52.75  Aligned_cols=115  Identities=16%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-----------c---hhHHHHHhcccCCCcEEEEecC-Cc--
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----------T---PGVAADVGHINTRSEVAGYMGN-DQ--   89 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-----------~---~g~~~dl~~~~~~~~v~~~~~t-~d--   89 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.++           .   ......+....  .++..+..+ ++  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345899999999999999999999998  999999862           1   11111222211  123222211 11  


Q ss_pred             -ccccc-------CCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 025206           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 -~~eal-------~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~----i~~~i~~~~p~~~iiv~tN  146 (256)
                       +++.+       ...|++|++||.....   ..+.   ...+..|+.-...    +.+.+.+.. .+.||++|.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  158 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSS  158 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             22222       3799999999975321   1222   3345566554444    444454443 466777764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.18  E-value=0.0013  Score=55.76  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHc---CCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL---   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~---~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal---   94 (256)
                      +.+++.|+||+|.+|..++..|++   .|.  +|++.|++.  +.....++.......++..+..+ ++   +.+.+   
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            345789999999999999999998   787  999999873  22222333221101123222211 11   11111   


Q ss_pred             ------CCCC--EEEEecCCCCCCC------CC---HHHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 025206           95 ------EDSD--VVIIPAGVPRKPG------MT---RDDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISN  146 (256)
Q Consensus        95 ------~~aD--vVIi~ag~~~~~g------~~---r~d~~~~N~~i~~~i~~~i~~~~-----p~~~iiv~tN  146 (256)
                            ...|  ++|++||.....+      .+   ....+..|+.....+.+.+.++-     ..+.||++|.
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS  156 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence                  1357  9999999743211      22   23356677766666666665543     2356777764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.18  E-value=0.00098  Score=59.45  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=49.6

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.++..+...|+  +|+.+|.+......  ....    .+..   . ++.+.+++||+|+++.
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVAC  218 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeC
Confidence            445679999998 9999999999998888  89999987422111  1111    1221   2 5567889999999987


Q ss_pred             CC
Q 025206          105 GV  106 (256)
Q Consensus       105 g~  106 (256)
                      ..
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.15  E-value=0.0016  Score=55.47  Aligned_cols=116  Identities=14%  Similarity=0.161  Sum_probs=69.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CCC--chhHHHHHhcccCCCcEEEEecC-Cc---ccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal-----   94 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.+ .+.  ......++.....  ++..+..+ ++   +++.+     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGR--SALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTS--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  898884 432  1222233332221  12222211 11   22222     


Q ss_pred             --CCCCEEEEecCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                        ...|++|++||....  +  ..+.   ...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence              378999999985421  1  1222   3456778777777777776554 2456777763

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.14  E-value=0.0016  Score=55.29  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---cccccc------CC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQAL------ED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal------~~   96 (256)
                      +.+.+.|+||+|.+|..++..|+.+|.  +|++.|.+. .....++.     .++..+..+ +   ++.+++      ..
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~   79 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGT   79 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            345789999999999999999999998  999999853 22222221     112222111 1   122222      38


Q ss_pred             CCEEEEecCCCCCC------C-CC---HHHHHHHHHHHHHHHHHHHHHh-----------CCCcEEEEecCCCC
Q 025206           97 SDVVIIPAGVPRKP------G-MT---RDDLFNINAGIVKDLCSAIAKY-----------CPNAIVNMISNPVN  149 (256)
Q Consensus        97 aDvVIi~ag~~~~~------g-~~---r~d~~~~N~~i~~~i~~~i~~~-----------~p~~~iiv~tNPvd  149 (256)
                      .|++|++||.....      + .+   ....+..|+.-...+.+.+.++           ...+.||++|....
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            99999999864210      0 11   2345566765544444444332           23567777775443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.14  E-value=0.0019  Score=55.48  Aligned_cols=116  Identities=13%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             CCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec-CCc---ccccc-----
Q 025206           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal-----   94 (256)
                      +.+++.|+||+  |.+|..++..|+.+|.  +|+++|.+.. .....++......  +..+.. -++   +.+.+     
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNS--PYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEcCCCCHHHHHHHHHHHHH
Confidence            34579999998  8999999999999998  9999998742 2222333221100  111111 111   22222     


Q ss_pred             --CCCCEEEEecCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 --EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                        ...|++|++||....     +  ..+   ....+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              367999999997532     1  122   23456778777777777776553 2367777764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.14  E-value=0.0019  Score=56.89  Aligned_cols=34  Identities=41%  Similarity=0.594  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            45788999999999999999999998  99999875

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.12  E-value=0.0089  Score=51.22  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---------hhHHHHHhcccCCCcEEEEecC-Cc---cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYMGN-DQ---LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---------~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea   93 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+..         .....++....  .++..+..+ ++   +.+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHH
Confidence            446899999999999999999999998  9999998731         12222232211  122222211 11   1112


Q ss_pred             -------cCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCC
Q 025206           94 -------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNS  150 (256)
Q Consensus        94 -------l~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~~~iiv~tNPvd~  150 (256)
                             +...|++|++||......   .+   -...+..|+.-...+.+.+.++   ...+.||+++.....
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  153 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhc
Confidence                   247899999999753221   12   2234556665444444444332   235678878765543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.12  E-value=0.0049  Score=53.18  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            345799999999999999999999998  999999874

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.12  E-value=0.0023  Score=54.92  Aligned_cols=122  Identities=15%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CCCCCC-CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEec-CCc---ccc
Q 025206           21 YSSESV-PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMG-NDQ---LGQ   92 (256)
Q Consensus        21 ~~~~~~-~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~e   92 (256)
                      |.+.++ +.+.+.|+||+|.+|..++..|+..|.  +|++.+...   ......++....  .++..+.. -++   +++
T Consensus        19 ~~~~m~~~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~   94 (267)
T 3u5t_A           19 YFQSMMETNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRR   94 (267)
T ss_dssp             --------CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHH
T ss_pred             cccccccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHH
Confidence            444443 345788999999999999999999998  888876542   222222333221  12222221 111   222


Q ss_pred             cc-------CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           93 AL-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        93 al-------~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      .+       ...|++|.+||......   .+   -...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        95 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A           95 LFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            22       37899999999753221   12   23345677776666666655543 3467777764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.11  E-value=0.0011  Score=56.97  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CC---cccccc-------CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQAL-------ED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~eal-------~~   96 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+...  ...+...    .+..+.. -+   ++.+++       ..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~--~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER--LKALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH--HHTTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHhhcC----CceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            35789999999999999999999998  89999986311  1111110    1221111 11   122222       37


Q ss_pred             CCEEEEecCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|++||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS  146 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISS  146 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            899999999753221   122   23456665444    44555555544 456776764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.0026  Score=53.47  Aligned_cols=110  Identities=17%  Similarity=0.187  Sum_probs=58.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----------CccccccCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----------DQLGQALEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----------~d~~eal~~a   97 (256)
                      .+++.|+||+|.+|..++..|+. |.  .|+++|.+....  .++.+..   .+.....+          .+..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhc---CCcceecccchHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999987 65  899999873211  1111110   11111100          0111234579


Q ss_pred             CEEEEecCCCCCCC--C-C---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 025206           98 DVVIIPAGVPRKPG--M-T---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        98 DvVIi~ag~~~~~g--~-~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      |++|++||......  + +   ....+..|+..    .+.+.+.+.+..  +.+|++|..
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~  134 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSG  134 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC--
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCc
Confidence            99999998753221  1 1   12334556544    555555555543  567666643

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.08  E-value=0.00023  Score=61.71  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEE-EEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV-~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |.+|..++..|... +  +| .++|.+...  ...+... ..  . .   ..++.++++++|+||++.
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~-~g--~-~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEV-YG--G-K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHH-TC--C-C---CCSSCCCCC---CEEECS
T ss_pred             ceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHH-cC--C-c---cCCHHHHHhcCCEEEEeC
Confidence            68999998 99999999988776 5  88 488986321  1122211 01  1 1   235556788999999985

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.004  Score=54.04  Aligned_cols=118  Identities=16%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccc-------cc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLG-------QA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-------ea   93 (256)
                      .+++.|+||+|.+|..++..|++.|. ...|++.|.+.  +.....++.......++..+..+ +   +++       +.
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45789999999999999999988764 23899999873  22333333321111122222211 1   111       22


Q ss_pred             cCCCCEEEEecCCCCCCC----CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|.+||.....+    .+   ....+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  175 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGS  175 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            346899999999653211    12   23345566544    444444445443 456777764

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.07  E-value=0.0016  Score=58.35  Aligned_cols=98  Identities=17%  Similarity=0.288  Sum_probs=57.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHH-HHHhcccCC--CcEEEEecCCcccccc-CCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVA-ADVGHINTR--SEVAGYMGNDQLGQAL-EDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~-~dl~~~~~~--~~v~~~~~t~d~~eal-~~aDvV  100 (256)
                      |+||+|+||+|.+|..+...|..++.+ |+..+...+   ..|.. .+. +..+.  ..+.... ..+. +++ +++|+|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~-~p~~~~~~~~~v~~-~~~~-~~~~~~~Dvv   79 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDL-HPQLKGIVELPLQP-MSDI-SEFSPGVDVV   79 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHH-CGGGTTTCCCBEEE-ESSG-GGTCTTCSEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHh-CccccCccceeEec-cCCH-HHHhcCCCEE
Confidence            579999999999999999998886544 777664432   23321 222 11111  1122111 0022 345 899999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      |++.+                -...+++++.+.+.  .+.+|-.|.+
T Consensus        80 f~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           80 FLATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             EECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             EECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            99853                12245556555443  4567666766

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.04  E-value=0.0015  Score=56.70  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~   63 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.| .+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~   43 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   43 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCC
Confidence            345789999999999999999999998  999999 76

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.03  E-value=0.0036  Score=52.85  Aligned_cols=71  Identities=10%  Similarity=0.049  Sum_probs=49.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +.++|.|||+ |.||...+..|+..|.  +|+++|.+.. ....++....   .+......++ .+.++++|+||.+-+
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~-~~l~~l~~~~---~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVS-AEINEWEAKG---QLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCC-HHHHHHHHTT---SCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCC-HHHHHHHHcC---CcEEEECCCC-HhHhCCCCEEEECCC
Confidence            4569999998 9999999999999887  8999987532 2223343321   2333333333 467899999998743

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.02  E-value=0.0017  Score=58.95  Aligned_cols=70  Identities=19%  Similarity=0.278  Sum_probs=44.5

Q ss_pred             ceEEEEcCCCCcHHHHHH-HHHcCCC-ccEEEEEeCCCchhHH-HHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~-~l~~~~~-~~eV~LiD~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|+||+|++|+-+.. .|.++++ ..++.++...+ .|.. .++...  ...+.  . .++ .+.++++|+||.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~--~-~~~-~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLH--D-AFD-IESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCE--E-TTC-HHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEE--e-cCC-hhHhccCCEEEECCC
Confidence            689999999999999998 8887774 34888876543 2221 112110  11122  1 112 235789999999865

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.01  E-value=0.0012  Score=57.46  Aligned_cols=75  Identities=24%  Similarity=0.339  Sum_probs=45.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEE-EeCCCchhHHHHHhccc-CCCcEEEEecCCccccccCCCCEEEEe
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~L-iD~~~~~g~~~dl~~~~-~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      |+++||+|+||+|.+|+.++..+.+.+-+ ||+- +|.+.......|+.+.. ....+..   +.|+++.++++|+||..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~v---~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVAL---TDDIERVCAEADYLIDF   80 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCBC---BCCHHHHHHHCSEEEEC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCcee---cCCHHHHhcCCCEEEEc
Confidence            56789999997799999999888766533 5554 68752111111222111 1111221   34677778899999886


Q ss_pred             c
Q 025206          104 A  104 (256)
Q Consensus       104 a  104 (256)
                      .
T Consensus        81 T   81 (272)
T 4f3y_A           81 T   81 (272)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.00  E-value=0.0023  Score=58.27  Aligned_cols=34  Identities=32%  Similarity=0.573  Sum_probs=27.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li   60 (256)
                      |+++||+|+||+|++|.-+...|.+++.+ ||..+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l   50 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEF-EIHAL   50 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCc-eEEEe
Confidence            45679999999999999999988887754 77544

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.00  E-value=0.0053  Score=52.65  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+++|.  +|++.|.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            345789999999999999999999998  999999873

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.00  E-value=0.0016  Score=57.70  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe-CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD-~~   63 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.| .+
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~   80 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   80 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            35789999999999999999999998  999999 76

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.00  E-value=0.0038  Score=56.14  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=44.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCCchhHHHHHhcccC--------CCcEEEEecCCccccccCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVGHINT--------RSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~~~g~~~dl~~~~~--------~~~v~~~~~t~d~~eal~~   96 (256)
                      ++++||+|+||+|++|..+...|..++.+ ||+.+ |..+..+...+-.+...        ...+.. . ..+. +.+++
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~d~-~~~~~   77 (350)
T 2ep5_A            2 ADKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI-V-STNY-EDHKD   77 (350)
T ss_dssp             CCCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE-E-CSSG-GGGTT
T ss_pred             CCCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEE-e-eCCH-HHhcC
Confidence            35689999998899999999988876543 67666 33322222122112111        001221 1 2232 34689


Q ss_pred             CCEEEEecC
Q 025206           97 SDVVIIPAG  105 (256)
Q Consensus        97 aDvVIi~ag  105 (256)
                      +|+||++.+
T Consensus        78 vDvVf~atp   86 (350)
T 2ep5_A           78 VDVVLSALP   86 (350)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999854

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.99  E-value=0.00094  Score=60.09  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      ....++|+|||. |.+|+.++..+. ..|.  +|+.+|.+... ....++.       +..   ..++.+.+++||+|++
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEE
Confidence            345679999998 999999999998 8888  99999987422 1111111       121   2256678899999999


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +..
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.99  E-value=0.017  Score=49.45  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=70.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec----CCcccccc--CCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQAL--EDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal--~~aDvVIi  102 (256)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++..+.....+.....  +...+..    ..+.++.+  -..|++|.
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            4677889999999999999999998  9999998754333333332221  1211111    11122222  35799999


Q ss_pred             ecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206          103 PAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .||......   .+.   ...+..|+.    ..+..++.+.+....+.||+++.
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            999754321   222   233455643    45666777777766678888864

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.98  E-value=0.00049  Score=58.04  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCCc-hhH-----HHHHhcccCCCcEEEEecCCcccccc-----
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGV-----AADVGHINTRSEVAGYMGNDQLGQAL-----   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~~-~g~-----~~dl~~~~~~~~v~~~~~t~d~~eal-----   94 (256)
                      +++++.|+||+|.+|..++..|+. .+.  .|++.|.+.. ...     ..|+.+.            .++.+.+     
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~------------~~v~~~~~~~~~   68 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQ------------QDITNVLDIIKN   68 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCH------------HHHHHHHHHTTT
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCH------------HHHHHHHHHHHh
Confidence            345789999999999999999998 676  8899988632 110     1111110            0111122     


Q ss_pred             CCCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      ...|++|++||.....   ..+   ....+..|+.-...+.+.+.+.- +.+.||+++.
T Consensus        69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            2789999999975321   122   23456778777777777766553 2356666654

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.97  E-value=0.0019  Score=58.85  Aligned_cols=71  Identities=18%  Similarity=0.282  Sum_probs=44.8

Q ss_pred             CceEEEEcCCCCcHHHHHH-HHHcCCC-ccEEEEEeCCCchhH-HHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~-~l~~~~~-~~eV~LiD~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++||+|+||+|++|+-+.. .|.++++ ..++.++....+ |. ..++...  ...+.  . .++ .+.++++|+||.+.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a-G~~~~~~~~~--~~~v~--~-~~~-~~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNA-GGKAPSFAKN--ETTLK--D-ATS-IDDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCT-TSBCCTTCCS--CCBCE--E-TTC-HHHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhc-CCCHHHcCCC--ceEEE--e-CCC-hhHhcCCCEEEECC
Confidence            4799999999999999998 8887774 348888765421 21 1122211  11122  1 112 23578999999986


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.96  E-value=0.0022  Score=54.45  Aligned_cols=115  Identities=11%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch--hHHHHHhcccCCCcEEEEecC-C---cccccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-D---QLGQAL-------   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t-~---d~~eal-------   94 (256)
                      ++++.|+||+|.+|..++..|+.+|.  +|++.+.+...  ....++... ...++..+..+ +   ++.+++       
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGG-GGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            34789999999999999999999998  99998776321  111222111 11123332211 1   122223       


Q ss_pred             CCCCEEEEecCC--CCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGV--PRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~--~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|++||.  ....   ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss  146 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGF  146 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEee
Confidence            378999999993  2111   1122   33456665444    44444445554 456666653

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.96  E-value=0.0023  Score=54.76  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             CCceEEEEcC--CCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEec-CCc---cccccC-----
Q 025206           27 PDRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQALE-----   95 (256)
Q Consensus        27 ~~~KI~IIGa--aG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~eal~-----   95 (256)
                      +.+++.|+||  +|.+|..++..|+..|.  +|++.|.+.... ..++.+.. ..++..+.. -++   +++.++     
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3457999998  89999999999999998  899999874221 11122111 111111111 111   222222     


Q ss_pred             -----CCCEEEEecCCCCC------C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206           96 -----DSDVVIIPAGVPRK------P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus        96 -----~aDvVIi~ag~~~~------~--g~~r---~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                           ..|++|++||....      +  ..+.   ...+..|+.....+.+.+.++- +.+.||++|
T Consensus        82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence                 78999999986531      1  1122   2346677777777777766543 345677665

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.95  E-value=0.0027  Score=57.60  Aligned_cols=71  Identities=21%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|+||+|++|.-+...|..+++ ..|+.++...+..|....+..    ..+...  ..+ .+.++++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~--~~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIE--ETT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEE--ECC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEe--eCC-HHHhcCCCEEEECCC
Confidence            36999999999999999998888754 457888865432222111111    112221  112 245789999999875

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.94  E-value=0.0011  Score=59.30  Aligned_cols=99  Identities=21%  Similarity=0.260  Sum_probs=63.5

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.+|+.+|..+...|.  +|+.+|.......+.+.   .    +..    .++++.+++||+|+++
T Consensus       161 ~~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~  226 (335)
T 2g76_A          161 TELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITVH  226 (335)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEEC
T ss_pred             cCCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEEe
Confidence            3455679999998 9999999999998887  99999987433221111   1    111    1456789999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      ......   ++ .++  |    .   +.+....|++++|+++-  ++|
T Consensus       227 ~P~t~~---t~-~li--~----~---~~l~~mk~gailIN~arg~vvd  261 (335)
T 2g76_A          227 TPLLPS---TT-GLL--N----D---NTFAQCKKGVRVVNCARGGIVD  261 (335)
T ss_dssp             CCCCTT---TT-TSB--C----H---HHHTTSCTTEEEEECSCTTSBC
T ss_pred             cCCCHH---HH-Hhh--C----H---HHHhhCCCCcEEEECCCccccC
Confidence            643211   11 011  1    1   22333457889998873  455

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.003  Score=55.98  Aligned_cols=116  Identities=16%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcc--cCCCcEEEEecC-C---ccccccC---
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHI--NTRSEVAGYMGN-D---QLGQALE---   95 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~--~~~~~v~~~~~t-~---d~~eal~---   95 (256)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.+.   ......++.+.  ....++.....+ +   ++.++++   
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            35789999999999999999999998  898877651   11111111110  001123222211 1   2223333   


Q ss_pred             ----CCCEEEEecCCCCCC---CCC---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 025206           96 ----DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ----~aDvVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~----~i~~~~p~~~iiv~tN  146 (256)
                          ..|++|++||.....   ..+   -...+..|+.....+.+    .+.+.. .+.||++|.
T Consensus        83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS  146 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISS  146 (324)
T ss_dssp             HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence                899999999964321   112   23345667555444444    445443 456666654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.91  E-value=0.0012  Score=59.30  Aligned_cols=100  Identities=22%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.+|+.+|..+...|.  +|..+|.........   . .    ...   ..++.+.+++||+|+++
T Consensus       169 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~-g----~~~---~~~l~ell~~sDvV~l~  234 (345)
T 4g2n_A          169 MGLTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---E-G----AIY---HDTLDSLLGASDIFLIA  234 (345)
T ss_dssp             CCCTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---T-T----CEE---CSSHHHHHHTCSEEEEC
T ss_pred             cccCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---c-C----CeE---eCCHHHHHhhCCEEEEe
Confidence            3445679999998 9999999999998887  999999874221111   1 1    111   23667889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS  150 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~  150 (256)
                      .....   +++ .++  |    .   +.+....|.+++|+++-  ++|.
T Consensus       235 ~Plt~---~T~-~li--~----~---~~l~~mk~gailIN~aRG~~vde  270 (345)
T 4g2n_A          235 APGRP---ELK-GFL--D----H---DRIAKIPEGAVVINISRGDLIND  270 (345)
T ss_dssp             SCCCG---GGT-TCB--C----H---HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             cCCCH---HHH-HHh--C----H---HHHhhCCCCcEEEECCCCchhCH
Confidence            64221   011 011  1    1   22334468899999973  5663

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.91  E-value=0.004  Score=58.95  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +.+||.+||. |-.|.+ +|..|..+|.  +|...|.+........|....    +..+.+. +......++|+||.+.|
T Consensus        18 ~~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~g----i~~~~G~-~~~~~~~~~d~vV~Spg   89 (524)
T 3hn7_A           18 QGMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQAG----VTIEEGY-LIAHLQPAPDLVVVGNA   89 (524)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHTT----CEEEESC-CGGGGCSCCSEEEECTT
T ss_pred             cCCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCC----CEEECCC-CHHHcCCCCCEEEECCC
Confidence            3469999999 989986 6888899998  999999874222223344332    3333332 32233368999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC--CchHHHHHHHHHhCCCCCCcEEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd--~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      .|...- ......+++++++.+. +.+.+. .++..+|-+|....  +++.+++.+++..| +++.-++|
T Consensus        90 i~~~~p-~l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G-~~~~~~iG  156 (524)
T 3hn7_A           90 MKRGMD-VIEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG-IDAGFLIG  156 (524)
T ss_dssp             CCTTSH-HHHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             cCCCCH-HHHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEEC
Confidence            764211 1111223444444332 233332 23345555654443  44557777888776 65544444

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.90  E-value=0.002  Score=58.33  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-HHHHh----cccC-----CCcEEEEecCCccccccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVG----HINT-----RSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-~~dl~----~~~~-----~~~v~~~~~t~d~~eal~~   96 (256)
                      +++||+|+||+|++|..+...|..++.+ ||..+...+..|. ..+..    |...     ...++.    .+ .+.+.+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~-~~~~~~   79 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TD-PKLMDD   79 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CC-GGGCTT
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CC-HHHhcC
Confidence            4579999999999999999988877644 7777754432232 12211    0000     112221    12 245789


Q ss_pred             CCEEEEecC
Q 025206           97 SDVVIIPAG  105 (256)
Q Consensus        97 aDvVIi~ag  105 (256)
                      +|+||.+.+
T Consensus        80 vDvvf~a~p   88 (359)
T 4dpl_A           80 VDIIFSPLP   88 (359)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999864

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.90  E-value=0.002  Score=58.33  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-HHHHh----cccC-----CCcEEEEecCCccccccCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVG----HINT-----RSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-~~dl~----~~~~-----~~~v~~~~~t~d~~eal~~   96 (256)
                      +++||+|+||+|++|..+...|..++.+ ||..+...+..|. ..+..    |...     ...++.    .+ .+.+.+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~-~~~~~~   79 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TD-PKLMDD   79 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CC-GGGCTT
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CC-HHHhcC
Confidence            4579999999999999999988877644 7777754432232 12211    0000     112221    12 245789


Q ss_pred             CCEEEEecC
Q 025206           97 SDVVIIPAG  105 (256)
Q Consensus        97 aDvVIi~ag  105 (256)
                      +|+||.+.+
T Consensus        80 vDvvf~a~p   88 (359)
T 4dpk_A           80 VDIIFSPLP   88 (359)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.90  E-value=0.0052  Score=57.70  Aligned_cols=133  Identities=14%  Similarity=0.239  Sum_probs=75.5

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +.+||.|||. |..|.+ +|..|..+|.  +|...|..... ....|....    +..+.+ .+ .+.+.++|+||.+-|
T Consensus        21 ~~~~v~viGi-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~Spg   90 (494)
T 4hv4_A           21 RVRHIHFVGI-GGAGMGGIAEVLANEGY--QISGSDLAPNS-VTQHLTALG----AQIYFH-HR-PENVLDASVVVVSTA   90 (494)
T ss_dssp             -CCEEEEETT-TSTTHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT----CEEESS-CC-GGGGTTCSEEEECTT
T ss_pred             cCCEEEEEEE-cHhhHHHHHHHHHhCCC--eEEEEECCCCH-HHHHHHHCC----CEEECC-CC-HHHcCCCCEEEECCC
Confidence            3469999998 999996 8999999999  99999986421 222344322    333333 23 346789999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--CchHHHHHHHHHhCCCCCCcEEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd--~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      .|...- ......+.+++++.+ .+.+.+......+|-+|....  +++.+++.+++..| +++.-++|
T Consensus        91 i~~~~p-~~~~a~~~gi~v~~~-~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g-~~~~~~~g  156 (494)
T 4hv4_A           91 ISADNP-EIVAAREARIPVIRR-AEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG-LDPTFVNG  156 (494)
T ss_dssp             SCTTCH-HHHHHHHTTCCEEEH-HHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred             CCCCCH-HHHHHHHCCCCEEcH-HHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC-CCCEEEEC
Confidence            764211 011111222332211 111222222234555654443  45567777888776 55444444

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.90  E-value=0.0022  Score=55.74  Aligned_cols=78  Identities=17%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcc-cCCCcEEEEe-cCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHI-NTRSEVAGYM-GNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~-~~~~~v~~~~-~t~d~~eal~~aDvVIi  102 (256)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.  +...+.++... ... .+..-. ...++.+.++++|+||.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVN-VTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCC-CEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcE-EEEecCCCHHHHHHHHHhCCEEEE
Confidence            446899999779999999999999997  799999873  22233333221 111 111111 11234567888999999


Q ss_pred             ecCCC
Q 025206          103 PAGVP  107 (256)
Q Consensus       103 ~ag~~  107 (256)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            99754

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.001  Score=58.78  Aligned_cols=99  Identities=25%  Similarity=0.289  Sum_probs=63.2

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.+|..++..+...|.  +|+.+|.+.......++   .    +..    .++++.+++||+|+++
T Consensus       138 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~  203 (307)
T 1wwk_A          138 IELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIH  203 (307)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEEC
T ss_pred             cccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEe
Confidence            3445679999998 9999999999998887  99999987533221111   1    111    1456788999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      ......   ++ .++  |    .+.   +....|++++|+++-  ++|
T Consensus       204 ~p~~~~---t~-~li--~----~~~---l~~mk~ga~lin~arg~~vd  238 (307)
T 1wwk_A          204 VPLVES---TY-HLI--N----EER---LKLMKKTAILINTSRGPVVD  238 (307)
T ss_dssp             CCCSTT---TT-TCB--C----HHH---HHHSCTTCEEEECSCGGGBC
T ss_pred             cCCChH---Hh-hhc--C----HHH---HhcCCCCeEEEECCCCcccC
Confidence            643211   11 011  1    122   233457889998863  444

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.87  E-value=0.00084  Score=60.44  Aligned_cols=99  Identities=22%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.++..|...|.  +|+.+|.........++.       +..   ..++.+.++.||+|+++.
T Consensus       165 ~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          165 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcC
Confidence            345679999998 9999999999998887  999999874332222111       111   124567889999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      .....   ++ .++  |    .   +.+....|++++|+++.  ++|
T Consensus       232 P~t~~---t~-~li--~----~---~~l~~mk~gailIN~arg~~vd  265 (347)
T 1mx3_A          232 GLNEH---NH-HLI--N----D---FTVKQMRQGAFLVNTARGGLVD  265 (347)
T ss_dssp             CCCTT---CT-TSB--S----H---HHHTTSCTTEEEEECSCTTSBC
T ss_pred             CCCHH---HH-HHh--H----H---HHHhcCCCCCEEEECCCChHHh
Confidence            43211   11 011  1    1   22333457889999873  565

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.87  E-value=0.00033  Score=60.26  Aligned_cols=112  Identities=21%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhH-----HHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+.....     ..|+.+..   .+...  -....+.+...|++|+
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEE
Confidence            45789999999999999999999998  9999998731100     01111100   00000  0011223457999999


Q ss_pred             ecCCCCCCC---CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 025206          103 PAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       103 ~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      +||......   .+   ....+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  154 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASC  154 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence            999754211   12   223455665444    44444445543 4677777643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.86  E-value=0.0012  Score=59.63  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCC----cEEEEecCCccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS----EVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~----~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      |+++||+|+||+|.+|..++..|.+++.+ |++.+...+..+...+-.|..+..    .+..    .+ ++.++++|+||
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVF   87 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEE
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEE
Confidence            35579999998899999999999887644 666664332222222222222211    1111    12 34557899999


Q ss_pred             EecC
Q 025206          102 IPAG  105 (256)
Q Consensus       102 i~ag  105 (256)
                      ++.|
T Consensus        88 ~atp   91 (359)
T 1xyg_A           88 CCLP   91 (359)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9875

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.86  E-value=0.0029  Score=58.53  Aligned_cols=92  Identities=13%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|+|. |.||..+|..|...|.  +|+.+|++......  .....    .+    ..++.+++++||+|+.+.+
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~--A~~~G----~~----~~sL~eal~~ADVVilt~g  275 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQ--AAMEG----YQ----VLLVEDVVEEAHIFVTTTG  275 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHHTT----CE----ECCHHHHTTTCSEEEECSS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHH--HHHhC----Ce----ecCHHHHHhhCCEEEECCC
Confidence            34569999998 9999999999998887  99999987422111  11111    11    1256789999999998765


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ...--+.                 +.+....|++++++++++
T Consensus       276 t~~iI~~-----------------e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          276 NDDIITS-----------------EHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             CSCSBCT-----------------TTGGGCCTTEEEEECSSS
T ss_pred             CcCccCH-----------------HHHhhcCCCcEEEEeCCC
Confidence            4321110                 123334578999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.86  E-value=0.0006  Score=62.14  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=76.0

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC----Cch------hHHHHHhcccCCCcEEEEecCCccccc
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----NTP------GVAADVGHINTRSEVAGYMGNDQLGQA   93 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~----~~~------g~~~dl~~~~~~~~v~~~~~t~d~~ea   93 (256)
                      ...+..||+|+|| |.+|..++..|...|. .+|+++|.+    +.+      .....+.+. ... .   ....++.++
T Consensus       188 ~~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~-~---~~~~~L~ea  260 (388)
T 1vl6_A          188 KKIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP-E---RLSGDLETA  260 (388)
T ss_dssp             CCTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT-T---CCCSCHHHH
T ss_pred             CCCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc-c---CchhhHHHH
Confidence            3456679999998 9999999999988884 689999997    211      111222221 111 1   113468899


Q ss_pred             cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++++|++|-+.+ |   +-           +.+++++.|+   ++++|+=.+||.-..+|   +-..+.|    ..++++
T Consensus       261 v~~ADVlIG~Sa-p---~l-----------~t~emVk~Ma---~~pIIfalSNPt~E~~p---~~a~~~g----~~i~at  315 (388)
T 1vl6_A          261 LEGADFFIGVSR-G---NI-----------LKPEWIKKMS---RKPVIFALANPVPEIDP---ELAREAG----AFIVAT  315 (388)
T ss_dssp             HTTCSEEEECSC-S---SC-----------SCHHHHTTSC---SSCEEEECCSSSCSSCH---HHHHHTT----CSEEEE
T ss_pred             HccCCEEEEeCC-C---Cc-----------cCHHHHHhcC---CCCEEEEcCCCCCCCCH---HHHHHhc----CeEEEe
Confidence            999999988754 3   21           1244444443   56788888999866443   3444333    367777


Q ss_pred             e
Q 025206          174 T  174 (256)
Q Consensus       174 t  174 (256)
                      +
T Consensus       316 G  316 (388)
T 1vl6_A          316 G  316 (388)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.85  E-value=0.0011  Score=58.42  Aligned_cols=94  Identities=19%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..|...|.  +|..+|.+....        ..   .    ...++.+.++.||+|+++.
T Consensus       121 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~~~--------~~---~----~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          121 LIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW---R----FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS---C----CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcccc--------Cc---c----cCCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999998888  999999864210        10   0    0225567899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      .....   ++ .++  |    .   +.+....|++++|+++.  ++|
T Consensus       183 P~~~~---t~-~~i--~----~---~~l~~mk~gailin~srg~~vd  216 (303)
T 1qp8_A          183 PLNKH---TR-GLV--K----Y---QHLALMAEDAVFVNVGRAEVLD  216 (303)
T ss_dssp             CCSTT---TT-TCB--C----H---HHHTTSCTTCEEEECSCGGGBC
T ss_pred             cCchH---HH-HHh--C----H---HHHhhCCCCCEEEECCCCcccC
Confidence            43211   11 011  1    1   22333457889999974  455

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.84  E-value=0.0034  Score=52.80  Aligned_cols=118  Identities=17%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-C--chhHHHHHhcccCCCcEEEEecC-Cc---cccccC---
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE---   95 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~---   95 (256)
                      .+.+++.|+||+|.+|..++..|+.+|.  .|++.+.. .  ......++....  .++.....+ ++   +++.++   
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   80 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLD   80 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHH
Confidence            4556899999999999999999999997  88886544 2  222233333221  122222111 11   111111   


Q ss_pred             ----------CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206           96 ----------DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus        96 ----------~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                                ..|++|++||......   .+   ....+..|+.....+.+.+.+.- +.+.||++|..
T Consensus        81 ~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~  149 (255)
T 3icc_A           81 NELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  149 (255)
T ss_dssp             HHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             HHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence                      2899999998743211   12   22345667666666666665442 34677777653

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.83  E-value=0.0024  Score=54.32  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      ..|||+|||+ |.+|.+++..|...|+  +|+++|.
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~--~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSVGH--YVTVLHA   37 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHTTC--EEEECSS
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHCCC--EEEEecC
Confidence            3479999998 9999999999999998  9999986

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.83  E-value=0.0016  Score=58.60  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=43.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEe
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ++++||+|+||+|.+|..+...|..++.+ |++.+...+..+...+-.+..+.  ..+..    .++. ++.++|+||++
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~~----~~~~-~~~~vDvV~~a   75 (345)
T 2ozp_A            2 TGKKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLKF----VPPE-KLEPADILVLA   75 (345)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCBC----BCGG-GCCCCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCcccccc----cchh-HhcCCCEEEEc
Confidence            34689999998899999999998877643 66665333212211111111111  11211    1222 36899999998


Q ss_pred             cCC
Q 025206          104 AGV  106 (256)
Q Consensus       104 ag~  106 (256)
                      .|.
T Consensus        76 ~g~   78 (345)
T 2ozp_A           76 LPH   78 (345)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            764

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.82  E-value=0.012  Score=50.70  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            345789999999999999999999998  999999873

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.82  E-value=0.013  Score=50.35  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++-+|..++..|+..|.  .|+++|+++  ++..+.++.....  ++..+..+ ++          ..+.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            344788999999999999999999998  999999983  3334444543221  12222111 11          1233


Q ss_pred             cCCCCEEEEecCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~--~~--g~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +-..|++|..||...  .+  ..+.   ...+..|+    ...+.+++.|.+.. .+.||+++.
T Consensus        82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS  144 (254)
T 4fn4_A           82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTAS  144 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            567999999999643  22  1222   22344553    45577777777665 467777763

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.80  E-value=0.0019  Score=58.27  Aligned_cols=99  Identities=24%  Similarity=0.375  Sum_probs=64.6

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++|+|||. |.+|+.+|..|...|.  +|..+|.+.. .....++.       +..   ..++++.++.||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEEC
Confidence            345679999998 9999999999998888  8999998642 22222221       111   23567889999999998


Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206          104 AGVP-RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS  150 (256)
Q Consensus       104 ag~~-~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~  150 (256)
                      .... ...+.     +  |    .+.   +....|++++|+++.  ++|.
T Consensus       228 ~Plt~~t~~l-----i--~----~~~---l~~mk~gailIN~aRG~~vde  263 (351)
T 3jtm_A          228 MPLTEKTRGM-----F--N----KEL---IGKLKKGVLIVNNARGAIMER  263 (351)
T ss_dssp             SCCCTTTTTC-----B--S----HHH---HHHSCTTEEEEECSCGGGBCH
T ss_pred             CCCCHHHHHh-----h--c----HHH---HhcCCCCCEEEECcCchhhCH
Confidence            6432 11111     1  1    122   333458899999973  5663

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.77  E-value=0.00086  Score=59.60  Aligned_cols=98  Identities=19%  Similarity=0.243  Sum_probs=62.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.+|+.+|..|...|.  +|..+|......     ..      +..+.+..++++.+++||+|+++..
T Consensus       137 l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~------~~~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          137 REEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----PG------VESYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             STTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----TT------CEEEESHHHHHHHHHTCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----hh------hhhhcccCCHHHHHhhCCEEEEecC
Confidence            34579999998 9999999999998888  999999863210     00      1111112367788999999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS  150 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~  150 (256)
                      ..  + +++ .++  |    .   +.+....|++++|+++-  ++|.
T Consensus       203 lt--~-~t~-~li--~----~---~~l~~mk~gailIN~aRG~~vd~  236 (315)
T 3pp8_A          203 NT--A-QTV-GII--N----S---ELLDQLPDGAYVLNLARGVHVQE  236 (315)
T ss_dssp             CC--G-GGT-TCB--S----H---HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             Cc--h-hhh-hhc--c----H---HHHhhCCCCCEEEECCCChhhhH
Confidence            21  1 011 011  1    1   22334457899999973  5663

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.77  E-value=0.0034  Score=56.88  Aligned_cols=100  Identities=17%  Similarity=0.282  Sum_probs=64.3

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.+|+.+|..+...|.  +|..+|.........+.   .    +. .   .++.+.++.||+|+++
T Consensus       172 ~~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~  237 (365)
T 4hy3_A          172 RLIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VE-P---ASLEDVLTKSDFIFVV  237 (365)
T ss_dssp             CCSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CE-E---CCHHHHHHSCSEEEEC
T ss_pred             cccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----ee-e---CCHHHHHhcCCEEEEc
Confidence            3345679999998 9999999999987787  99999986422221111   1    11 1   2567889999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~  150 (256)
                      .....   +++ .++  |    .   +.+....|.+++|+++  .++|.
T Consensus       238 ~Plt~---~T~-~li--~----~---~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          238 AAVTS---ENK-RFL--G----A---EAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             SCSSC---C----CC--C----H---HHHHTSCTTCEEEECSCGGGSCH
T ss_pred             CcCCH---HHH-hhc--C----H---HHHhcCCCCcEEEECcCCchhCH
Confidence            64321   111 111  1    1   2334446889999997  46663

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.76  E-value=0.0087  Score=51.42  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=71.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---c-------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---Q-------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d-------~~eal   94 (256)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|++.  +...+.++.+...  +...+..+ +   +       ..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            34678889999999999999999998  999999983  2333344443221  11111100 1   1       12334


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      -..|++|..||......   .+.   ...+..|+    ...+..++.+.+....+.||+++.
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS  146 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGS  146 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEee
Confidence            57899999999754321   122   22345554    355677777766666678888874

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.76  E-value=0.002  Score=57.59  Aligned_cols=68  Identities=25%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..+...|.  +|+.+|.+.......+.   .    +..   . ++.+.+++||+|+++.
T Consensus       143 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~---~-~l~e~l~~aDiVil~v  208 (333)
T 2d0i_A          143 SLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL---K----ARY---M-DIDELLEKSDIVILAL  208 (333)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH---T----EEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee---c-CHHHHHhhCCEEEEcC
Confidence            345679999998 9999999999998887  99999987533221111   1    221   2 5567789999999986


Q ss_pred             CC
Q 025206          105 GV  106 (256)
Q Consensus       105 g~  106 (256)
                      ..
T Consensus       209 p~  210 (333)
T 2d0i_A          209 PL  210 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.75  E-value=0.0041  Score=58.32  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-----hhHHHHHhcccCCCcEEEEecC-C---ccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYMGN-D---QLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-----~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~~a   97 (256)
                      ...++.|+||+|.+|..++..|+.+|. ..|++++.+..     .....++....  .++..+.++ +   ++.+.++.+
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHHH
Confidence            346899999999999999999998886 24999988731     22223343321  233333221 1   233344444


Q ss_pred             ------CEEEEecCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           98 ------DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        98 ------DvVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                            |.||++||.....   ..+.   ...+..|+.....+.+.+.+.. ...||++|
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~S  360 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFS  360 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEE
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEc
Confidence                  9999999975432   1222   2345667888888888776553 34566665

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.75  E-value=0.0022  Score=57.24  Aligned_cols=68  Identities=25%  Similarity=0.447  Sum_probs=50.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|..++..+...|.  +|+.+|.+.......++   .    +. .   .++.+.+++||+|+++.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AE-F---KPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CE-E---CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----cc-c---CCHHHHHhhCCEEEECC
Confidence            445679999998 9999999999998887  99999987533211111   1    12 1   25567889999999987


Q ss_pred             CC
Q 025206          105 GV  106 (256)
Q Consensus       105 g~  106 (256)
                      ..
T Consensus       213 p~  214 (334)
T 2dbq_A          213 PL  214 (334)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.75  E-value=0.0037  Score=55.20  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC---------C--chhHHHHHhcccCCCcEEEE-ecCCccc---
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA---------N--TPGVAADVGHINTRSEVAGY-MGNDQLG---   91 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~---------~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~---   91 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|..         .  +.....++....  ...... ....++.   
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D~~~~~~~~~~~   83 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLV   83 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEeCCCHHHHHHHH
Confidence            345799999999999999999999998  99998763         1  122223333211  111110 0011111   


Q ss_pred             ----cccCCCCEEEEecCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           92 ----QALEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        92 ----eal~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                          +.+...|++|+.||......   .+.   ...+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS  151 (319)
T 1gz6_A           84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  151 (319)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence                12347899999999754321   222   2345566554    444455555443 456666653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.72  E-value=0.00042  Score=63.32  Aligned_cols=136  Identities=19%  Similarity=0.272  Sum_probs=80.5

Q ss_pred             cccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-c-hhHHHHHhccc--CCCcEEEEecC
Q 025206           12 LAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-PGVAADVGHIN--TRSEVAGYMGN   87 (256)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~-~g~~~dl~~~~--~~~~v~~~~~t   87 (256)
                      ||-.+.+.+......++.||+|+|| |..|..++..+...|. .+|+++|.+- . ++...+|.+..  +..+.......
T Consensus       172 lAall~al~l~g~~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~  249 (398)
T 2a9f_A          172 LAAIFNSLKLLKKSLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKS  249 (398)
T ss_dssp             HHHHHHHHHTTTCCTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCC
T ss_pred             HHHHHHHHHHhCCCCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccch
Confidence            3333334444455566789999998 9999999999988775 6999999872 1 11000122111  00000000013


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      .++.++++++|++|=+.+ |   |-           +.+++++.|+   ++++|+-.|||.-..+|   +-..+.|    
T Consensus       250 ~~L~eav~~ADV~IG~Sa-p---gl-----------~T~EmVk~Ma---~~pIIfalsNPt~E~~p---e~a~~~g----  304 (398)
T 2a9f_A          250 GTLEDALEGADIFIGVSA-P---GV-----------LKAEWISKMA---ARPVIFAMANPIPEIYP---DEALEAG----  304 (398)
T ss_dssp             CSCSHHHHTTCSEEECCS-T---TC-----------CCHHHHHTSC---SSCEEEECCSSSCSSCH---HHHHTTT----
T ss_pred             hhHHHHhccCCEEEecCC-C---CC-----------CCHHHHHhhC---CCCEEEECCCCCccCCH---HHHHHhC----
Confidence            467899999999876632 2   31           1245555543   78899999999866443   3333332    


Q ss_pred             CcEEEEe
Q 025206          168 KKLFGVT  174 (256)
Q Consensus       168 ~kviG~t  174 (256)
                      ..+++++
T Consensus       305 ~~i~atG  311 (398)
T 2a9f_A          305 AYIVGTG  311 (398)
T ss_dssp             CSEEEES
T ss_pred             CeEEEeC
Confidence            3588774

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.71  E-value=0.027  Score=47.64  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345789999999999999999999998  999999873

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.70  E-value=0.0045  Score=53.99  Aligned_cols=98  Identities=19%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|+|+ |.+|..++..+...|.  +|..+|.+....  ..+.+..    .+... ..++.+.++++|+|+++.
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~~~-~~~l~~~l~~aDvVi~~~  221 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLL--ARIAEMG----MEPFH-ISKAAQELRDVDVCINTI  221 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTT----SEEEE-GGGHHHHTTTCSEEEECC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----CeecC-hhhHHHHhcCCCEEEECC
Confidence            345579999998 9999999999998887  999999863221  1122111    11111 235667889999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t-NPvd~  150 (256)
                      ..    +.     +  |.    +   .+....|.+++|+++ +|.+.
T Consensus       222 p~----~~-----i--~~----~---~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          222 PA----LV-----V--TA----N---VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             SS----CC-----B--CH----H---HHHHSCTTCEEEECSSTTCSB
T ss_pred             Ch----HH-----h--CH----H---HHHhcCCCCEEEEecCCCCCC
Confidence            32    11     1  11    1   223335788999998 77664

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.70  E-value=0.00088  Score=59.45  Aligned_cols=94  Identities=16%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY   84 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~   84 (256)
                      .|-..+|-|..+-+-+++... ...+|+|||+ |.+|...+..|.....+.+|.++|++++...+.++.+.. ...+.. 
T Consensus        99 ~lT~~RTaA~s~laa~~La~~-~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~-  174 (313)
T 3hdj_A           99 TLTRKRTAACTVLAAGALARP-RSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM-  174 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE-
T ss_pred             hhhhHHHHHHHHHHHHhhccC-CCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE-
Confidence            344445544444444444433 4468999998 999999888776532357999999985444445544211 112332 


Q ss_pred             ecCCccccccCCCCEEEEecC
Q 025206           85 MGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        85 ~~t~d~~eal~~aDvVIi~ag  105 (256)
                        . ++++++++||+||.+-.
T Consensus       175 --~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          175 --A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             --C-CHHHHHHHCSEEEECCC
T ss_pred             --e-CHHHHHhhCCEEEEccC
Confidence              3 67789999999998854

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.69  E-value=0.0018  Score=55.37  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C------ccccc
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D------QLGQA   93 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~------d~~ea   93 (256)
                      |..+.-+-+.+.|+||++-+|..++..|++.|.  +|++.|++....     .... ..++.....+ +      .+.+.
T Consensus         4 f~~dlf~GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~-----~~~~-~~~~~~~~~Dv~~~~~v~~~~~~   75 (242)
T 4b79_A            4 FQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGV-----HAPR-HPRIRREELDITDSQRLQRLFEA   75 (242)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTST-----TSCC-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-----hhhh-cCCeEEEEecCCCHHHHHHHHHh
Confidence            333333456889999999999999999999998  999999873110     0000 0111111100 1      12245


Q ss_pred             cCCCCEEEEecCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG-MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|..||...... .+.   ...+..|+.    ..+...+.+++.  .+.||+++.
T Consensus        76 ~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  134 (242)
T 4b79_A           76 LPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIAS  134 (242)
T ss_dssp             CSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEee
Confidence            678999999999754221 121   223444543    345555655544  377888764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.68  E-value=0.0012  Score=59.53  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      .+.||+|+||+|++|.-+...|..++.+ ||.++...+..|+..+-.+..+...+...  ..+.++..+++|+||++.+
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~~--~~~~~~~~~~~Dvvf~alp   87 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS--EFDPEKVSKNCDVLFTALP   87 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB--CCCHHHHHHHCSEEEECCS
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceEE--eCCHHHhhcCCCEEEECCC
Confidence            5679999999999999999999988754 88888655333332221111111112211  1232222378999999875

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.67  E-value=0.028  Score=43.61  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=53.1

Q ss_pred             CCceEEEEcCC---CCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaa---G~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ++.+|+|||++   |.+|..++..|...|+  +|+-+|....  .   +.      .+..+   .++.+..+++|+++++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~~--~---i~------G~~~~---~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---IE------GLKCY---RSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEECB---SSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCCC--e---EC------Ceeec---CCHHHhCCCCCEEEEE
Confidence            56799999976   8999999999999998  6555544321  1   11      12222   1445556789999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~ii  142 (256)
                      ..                .+.+.++++.+.+.+..++++
T Consensus        77 vp----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           77 VP----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             SC----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            42                233455666666666666444

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.67  E-value=0.001  Score=57.90  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHc-CCCccEEE-EEeCCCchhHHHHHhccc-C-CCcEEEEecCCccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLA-LYDIANTPGVAADVGHIN-T-RSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~-LiD~~~~~g~~~dl~~~~-~-~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +++|||+|+|++|.+|+.++..+.+ .++  +|+ .+|.+.......|+.+.. . ...+..   .+++++.++++|+||
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFI   77 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEE
Confidence            3568999999889999999887764 455  666 778753110011222111 0 112222   235667788999999


Q ss_pred             Ee
Q 025206          102 IP  103 (256)
Q Consensus       102 i~  103 (256)
                      ..
T Consensus        78 Df   79 (273)
T 1dih_A           78 DF   79 (273)
T ss_dssp             EC
T ss_pred             Ec
Confidence            44

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.66  E-value=0.0006  Score=59.92  Aligned_cols=94  Identities=22%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.+|+.+|..|...|.  +|..+|.+.....     .      ...   ..++++.+++||+|+++..
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----~------~~~---~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN-----V------DVI---SESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT-----C------SEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc-----c------ccc---cCChHHHhhccCeEEEEee
Confidence            34579999998 9999999999998888  9999998732110     0      111   2366788999999999864


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206          106 VP-RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (256)
Q Consensus       106 ~~-~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~  150 (256)
                      .. ...+.     +  |    .   +.+....|++++|+++  .++|.
T Consensus       183 ~t~~t~~l-----i--~----~---~~l~~mk~gailIN~aRG~~vd~  216 (290)
T 3gvx_A          183 LTDKTRGM-----V--N----S---RLLANARKNLTIVNVARADVVSK  216 (290)
T ss_dssp             CCTTTTTC-----B--S----H---HHHTTCCTTCEEEECSCGGGBCH
T ss_pred             ccccchhh-----h--h----H---HHHhhhhcCceEEEeehhcccCC
Confidence            32 11111     1  1    1   2233445889999987  45663

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.66  E-value=0.017  Score=48.88  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             CCceEEEEcCC--CCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEecC-C---ccc------
Q 025206           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-D---QLG------   91 (256)
Q Consensus        27 ~~~KI~IIGaa--G~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~t-~---d~~------   91 (256)
                      +.+++.|+||+  |.+|..++..|+..|.  .|+++|.+..   .....++.... ..++..+..+ +   +++      
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            34589999998  7999999999999998  9999987732   23333343211 1112211110 1   111      


Q ss_pred             -cccCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 025206           92 -QALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        92 -eal~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +.+...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||+++.
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  160 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITAS  160 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEcc
Confidence             22346799999999754321   12   22345556543    444445555554 356666654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.63  E-value=0.00076  Score=61.81  Aligned_cols=77  Identities=23%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCc-cEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccccCC--CC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQALED--SD   98 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~-~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~--aD   98 (256)
                      |+||+|+|| |.+|+.++..|++.+.. .+|++.|.+.  +...+.++.... ..++.....    ..++.+.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            368999998 99999999999988743 5899999983  233333333211 011221111    1234556666  89


Q ss_pred             EEEEecCC
Q 025206           99 VVIIPAGV  106 (256)
Q Consensus        99 vVIi~ag~  106 (256)
                      +||++++.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999863

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.61  E-value=0.0056  Score=55.05  Aligned_cols=31  Identities=39%  Similarity=0.630  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li   60 (256)
                      +||+|+||+|++|..++..|..++.+ ||+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~-ev~~i   39 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMF-ELTAL   39 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCC-EEEEE
Confidence            69999998899999999988876533 77666

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.60  E-value=0.0035  Score=57.89  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ....+|+|+|. |.||..++..|...|.  +|+.+|+++...... ..+ .    .+    ..++.+++++||+||.+.|
T Consensus       218 L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A-~~~-G----~~----v~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          218 FGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQA-CMD-G----FR----LVKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHT-T----CE----ECCHHHHTTTCSEEEECSS
T ss_pred             ecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH-HHc-C----CE----eccHHHHHhcCCEEEECCC
Confidence            34569999998 9999999999998887  899999874221110 111 1    11    1246789999999999754


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      .+   +.     +  |    .+.+   ....|.+++++++.+
T Consensus       285 t~---~l-----I--~----~e~l---~~MK~gailINvgrg  309 (435)
T 3gvp_A          285 NK---NV-----V--T----REHL---DRMKNSCIVCNMGHS  309 (435)
T ss_dssp             CS---CS-----B--C----HHHH---HHSCTTEEEEECSST
T ss_pred             Cc---cc-----C--C----HHHH---HhcCCCcEEEEecCC
Confidence            33   11     0  0    1222   233578999999865

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.014  Score=49.34  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc-------cC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea-------l~   95 (256)
                      +++.|+||+|.+|.+++..|+..|....|++.+.+.  +.....++..     ++..+..+ +|   +++.       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD-----RFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGG-----GEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCC-----ceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            368899999999999999998875323888888763  2222222211     12222111 11   2222       23


Q ss_pred             CCCEEEEecCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 025206           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus        96 ~aDvVIi~ag~~~~--~--g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ..|++|++||....  +  ..+.   ...+..|+.    ..+.+.+.+.+..  +.||++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997432  1  1222   234555644    4444555555543  6777776543

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.57  E-value=0.0038  Score=55.27  Aligned_cols=115  Identities=15%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--Cchh---HHHHHhc-ccCCCcEEEEecC-C---ccccccC---
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPG---VAADVGH-INTRSEVAGYMGN-D---QLGQALE---   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g---~~~dl~~-~~~~~~v~~~~~t-~---d~~eal~---   95 (256)
                      ++|.|+||+|.+|..++..|+.+|.  +|++++.+  ....   ....+.. .....++..+..+ +   ++.++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4689999999999999999999997  67777654  2211   1111110 0001123322211 1   2222333   


Q ss_pred             --CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 025206           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (256)
Q Consensus        96 --~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~~~iiv~tN  146 (256)
                        ..|++|++||......   .+   ....+..|+.....+.+.    +.+.. .+.||++|.
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~isS  142 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence              4899999998653211   12   233456665544444444    54443 456666653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.57  E-value=0.0043  Score=53.03  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            358999998 9999999999998885 5999999873

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.54  E-value=0.0039  Score=55.32  Aligned_cols=68  Identities=21%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC-CCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~-~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++|+|||. |.+|..++..+...|.  +|+.+|. +.......++.       +..   ..++.+.+++||+|+++
T Consensus       143 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~  209 (320)
T 1gdh_A          143 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-------ATF---HDSLDSLLSVSQFFSLN  209 (320)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-------cEE---cCCHHHHHhhCCEEEEe
Confidence            445679999998 9999999999998887  9999998 74332222111       111   22556788999999998


Q ss_pred             cC
Q 025206          104 AG  105 (256)
Q Consensus       104 ag  105 (256)
                      ..
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.53  E-value=0.0065  Score=56.45  Aligned_cols=73  Identities=14%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cC---CccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t---~d~~eal~~aDvVIi  102 (256)
                      ++++|.|+|+ |++|..++..|+..|.  +|+++|.+..  .+.++.+.. . .+.... ..   .++.++++++|+||+
T Consensus         2 ~~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~--~a~~la~~~-~-~~~~~~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 ATKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGV-Q-HSTPISLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHH--HHHHTTTTC-T-TEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHH--HHHHHHHhc-C-CceEEEeecCCHHHHHHHHcCCcEEEE
Confidence            4568999996 9999999999998886  8999998632  222232211 1 122111 11   134467789999999


Q ss_pred             ecCC
Q 025206          103 PAGV  106 (256)
Q Consensus       103 ~ag~  106 (256)
                      +++.
T Consensus        75 ~a~~   78 (450)
T 1ff9_A           75 LIPY   78 (450)
T ss_dssp             CCC-
T ss_pred             CCcc
Confidence            9864

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.52  E-value=0.0019  Score=57.10  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.++|+|||+ |.+|..++..|... + +.+|.++|++...  +.++.+.... .+..   ..+++++++++|+|+++.
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~--~~~l~~~~~~-~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKEN--AEKFADTVQG-EVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHH--HHHHHHHSSS-CCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHH--HHHHHHHhhC-CeEE---eCCHHHHHhcCCEEEEEe
Confidence            4579999998 99999999888764 5 3589999987322  1222211000 1222   346678899999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.50  E-value=0.0035  Score=57.38  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++|+|||. |.+|+.+|..+...|.  +|+.+|.... .....++.       +..   ..++++.++.||+|+++
T Consensus       188 ~l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEe
Confidence            345679999998 9999999999988887  9999998742 22212111       111   12456789999999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      .....   +++ .++  |    .   +.+....|++++|+++-  ++|
T Consensus       255 ~Plt~---~t~-~li--~----~---~~l~~mk~gailIN~aRG~~vd  289 (393)
T 2nac_A          255 CPLHP---ETE-HMI--N----D---ETLKLFKRGAYIVNTARGKLCD  289 (393)
T ss_dssp             SCCCT---TTT-TCB--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             cCCch---HHH-HHh--h----H---HHHhhCCCCCEEEECCCchHhh
Confidence            64321   111 111  1    1   22233457889998873  455

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.50  E-value=0.0065  Score=55.05  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             CceEEEEcCCCCcHHHHHH-HHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~-~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+||+|+||+|++|..+.. .|.++++ ..+++++..+. .|..  +.+.. ...+.... ..+. +.++++|+||.+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~--v~~~~-g~~i~~~~-~~~~-~~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQA--APSFG-GTTGTLQD-AFDL-EALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSB--CCGGG-TCCCBCEE-TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCC--ccccC-CCceEEEe-cCCh-HHhcCCCEEEECCC
Confidence            4699999999999999999 6665553 34787775542 2221  11100 01122111 2222 34679999999865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.47  E-value=0.0074  Score=52.16  Aligned_cols=70  Identities=14%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +.+||+|||+ |.+|.+++..|...|.  +|.++|.+..+  +.++.+..   .+..   ..++.+.++++|+||.+.+.
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            3469999998 9999999999998887  99999986322  22333211   1222   22566788999999999754


Q ss_pred             C
Q 025206          107 P  107 (256)
Q Consensus       107 ~  107 (256)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.47  E-value=0.0075  Score=52.83  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=44.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEE-EEEeCCCchhHHHHHhccc-C-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHIN-T-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV-~LiD~~~~~g~~~dl~~~~-~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .++||+|+|++|.+|+.++..+.+.+-+ || ..+|.+.......|+.+.. . +..+..   +.|+++.++++|+||-.
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~-eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v---~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDV-ELCAVLVRKGSSFVDKDASILIGSDFLGVRI---TDDPESAFSNTEGILDF   95 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSE-EEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC---BSCHHHHTTSCSEEEEC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCccccccchHHhhccCcCCcee---eCCHHHHhcCCCEEEEc
Confidence            5679999997799999999988765433 54 4457752111112222211 0 112222   34777788899999865

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.47  E-value=0.0057  Score=54.77  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++||+|+||+|.+|..+...|.++++ .-+++++...+..+....+..    ..+...  ..+. ++++++|+||++.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g----~~i~~~--~~~~-~~~~~~DvV~~a~g   77 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE----SSLRVG--DVDS-FDFSSVGLAFFAAA   77 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT----EEEECE--EGGG-CCGGGCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCC----cceEEe--cCCH-HHhcCCCEEEEcCC
Confidence            47999999999999999998885543 226666643221111000110    112211  1122 34679999999875

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.46  E-value=0.0085  Score=53.81  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|+||+|++|.-+...|..+++ ..|+.++...+..|....+..    ..+.... . + .+.++++|+||.+.|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            6999999999999999998888743 337888865432222111111    1122211 1 2 246789999999865

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.46  E-value=0.0092  Score=55.23  Aligned_cols=126  Identities=17%  Similarity=0.157  Sum_probs=73.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCC-CCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~-aDvVIi~  103 (256)
                      +.+||.|+|. |..|.+.|..|..+|+  +|..+|.+..  ......|....    +..+.+. +..+.+.+ +|+||.+
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~g----i~~~~g~-~~~~~~~~~~d~vv~s   79 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEEG----IKVVCGS-HPLELLDEDFCYMIKN   79 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHTT----CEEEESC-CCGGGGGSCEEEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhCC----CEEEECC-ChHHhhcCCCCEEEEC
Confidence            4569999998 9999999999999998  9999998631  12223344322    3333333 22334566 9999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCchHHHHHHHHHhC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv--d~~~~i~~~~~~~~~  163 (256)
                      .|.|...- ........+++++.+ .+.+.+..+ ..+|-+|...  ..++.+++.+++..|
T Consensus        80 pgi~~~~p-~~~~a~~~gi~v~~~-~e~~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           80 PGIPYNNP-MVKKALEKQIPVLTE-VELAYLVSE-SQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             TTSCTTSH-HHHHHHHTTCCEECH-HHHHHHHCC-SEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCh-hHHHHHHCCCcEEeH-HHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            88764221 011112223333322 122223333 3566666554  344557777788776

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.44  E-value=0.013  Score=56.54  Aligned_cols=120  Identities=17%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC---------CC--chhHHHHHhcccCCCcEEEE-ecCCc
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI---------AN--TPGVAADVGHINTRSEVAGY-MGNDQ   89 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~---------~~--~~g~~~dl~~~~~~~~v~~~-~~t~d   89 (256)
                      .....+.+.+.|+||+|.+|..++..|+.+|.  .|++.|.         +.  +.....++.....  ..... ....+
T Consensus        13 ~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~D~~d~~~   88 (613)
T 3oml_A           13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG--EAVADYNSVID   88 (613)
T ss_dssp             --CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC--CEEECCCCGGG
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC--eEEEEeCCHHH
Confidence            33344556788999999999999999999998  9999987         21  2223333432211  11110 00011


Q ss_pred             ccc-------ccCCCCEEEEecCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 025206           90 LGQ-------ALEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 ~~e-------al~~aDvVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..+       .+...|++|++||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        89 ~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~g~IV~isS  161 (613)
T 3oml_A           89 GAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-NYGRIIMTSS  161 (613)
T ss_dssp             HHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence            112       233689999999975432   1222   23455665544    4444444443 3466777754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.41  E-value=0.013  Score=51.00  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.++|.|+|+ |.||...+..|+..|.  +|+++|.+
T Consensus        12 ~~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCC
Confidence            4579999998 9999999999999997  99999875

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.40  E-value=0.0054  Score=58.15  Aligned_cols=71  Identities=25%  Similarity=0.341  Sum_probs=51.7

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |.......++|+|||. |.+|+.+|..|...|.  +|+.+|.+.....+.++.       +..   . ++.+.+++||+|
T Consensus       135 ~~~~~l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV  200 (529)
T 1ygy_A          135 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFI  200 (529)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEE
T ss_pred             cCccccCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEE
Confidence            4444556689999998 9999999999998887  999999875322222221       111   1 456788999999


Q ss_pred             EEecC
Q 025206          101 IIPAG  105 (256)
Q Consensus       101 Ii~ag  105 (256)
                      +++..
T Consensus       201 ~l~~P  205 (529)
T 1ygy_A          201 SVHLP  205 (529)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99864

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.40  E-value=0.013  Score=55.39  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-----hhHHHHHhcccCCCcEEEEecC-C---ccccccC--C
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYMGN-D---QLGQALE--D   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-----~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~--~   96 (256)
                      ..+|.|+||+|.+|..++..|+.+|. ..|++++.+..     .....++....  .++..+.++ +   ++.+.++  .
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dvtd~~~v~~~~~~~~  335 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGHG--CEVVHAACDVAERDALAALVTAYP  335 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTTT--CEEEEEECCSSCHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHhcCC
Confidence            46899999999999999999998886 35888887631     22233343321  234333221 1   2333443  3


Q ss_pred             CCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .|+||++||......   .+.   ...+..|+.....+.+.+.+..+...||++|
T Consensus       336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~S  390 (511)
T 2z5l_A          336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFS  390 (511)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEE
T ss_pred             CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Confidence            899999999754321   122   2345567777776766655441223455554

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.39  E-value=0.0045  Score=55.67  Aligned_cols=74  Identities=18%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +..+|+|||+ |.+|...+..+....-+.+|.++|++.  ++..+.++... ....+..   ..++++++++||+||++-
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            4569999998 999999887664322245999999873  23333333221 0112222   346778899999999985


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.38  E-value=0.1  Score=44.65  Aligned_cols=114  Identities=17%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchh-HHHHHhcccCCCcEEEEec-CCc----------ccccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g-~~~dl~~~~~~~~v~~~~~-t~d----------~~eal   94 (256)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|++.... ....+.....  +...+.. -++          ..+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQP--RATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCT--TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCC--CEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            345778999999999999999999998  999999874222 2222222111  1111110 011          12334


Q ss_pred             CCCCEEEEecCCCCCCC--CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG--MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g--~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      -..|++|..||......  .+..   ..+..|+    ...+..++.+++.  .+.||+++.
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  140 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISS  140 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEee
Confidence            67999999999754332  2222   2344453    3456666666544  367777763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.38  E-value=0.0048  Score=57.52  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.|||.|+|+ |.||+++|..|...|+  +|+++|.++
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCH
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            4689999998 9999999999999998  999999984

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.38  E-value=0.011  Score=55.62  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             CC-ceEEEEcCCCCcHHHHHHHHHcC------CCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCC
Q 025206           27 PD-RKVAVLGAAGGIGQPLALLMKLN------PLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALED   96 (256)
Q Consensus        27 ~~-~KI~IIGaaG~VG~~la~~l~~~------~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~   96 (256)
                      +. +||+|||. |.+|.+++..|...      |+  +|++.+...  ....+.+..  ... ...     ..++.+++++
T Consensus        52 ~GiKkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G--~~v~d~t-----a~s~aEAa~~  121 (525)
T 3fr7_A           52 KGIKQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAG--FTEESGT-----LGDIWETVSG  121 (525)
T ss_dssp             TTCSEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTT--CCTTTTC-----EEEHHHHHHH
T ss_pred             cCCCEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCC--CEEecCC-----CCCHHHHHhc
Confidence            44 79999998 99999999999988      87  776555442  222222111  100 000     1245688999


Q ss_pred             CCEEEEec
Q 025206           97 SDVVIIPA  104 (256)
Q Consensus        97 aDvVIi~a  104 (256)
                      ||+||++.
T Consensus       122 ADVVILaV  129 (525)
T 3fr7_A          122 SDLVLLLI  129 (525)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEECC
Confidence            99999985

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.38  E-value=0.0032  Score=56.25  Aligned_cols=97  Identities=25%  Similarity=0.330  Sum_probs=61.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.++..+...|.  +|+.+|...... ..++    ..  .     ..++.+.+++||+|+++.
T Consensus       143 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~----~~--~-----~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          143 EVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK----GY--Y-----VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT----TC--B-----CSCHHHHHHHCSEEEECS
T ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh----Ce--e-----cCCHHHHHhhCCEEEEcC
Confidence            334579999998 9999999999998887  999999874322 1111    11  0     124567889999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd  149 (256)
                      ....  . ++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       208 p~~~--~-t~-~li--~----~~~---l~~mk~ga~lIn~arg~~vd  241 (333)
T 1j4a_A          208 PDVP--A-NV-HMI--N----DES---IAKMKQDVVIVNVSRGPLVD  241 (333)
T ss_dssp             CCCG--G-GT-TCB--S----HHH---HHHSCTTEEEEECSCGGGBC
T ss_pred             CCcH--H-HH-HHH--h----HHH---HhhCCCCcEEEECCCCcccC
Confidence            4221  0 01 011  1    112   22345788999886  3566

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.37  E-value=0.0058  Score=56.30  Aligned_cols=97  Identities=21%  Similarity=0.277  Sum_probs=62.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ....++|+|||. |.+|+.+|..+...|.  +|+.||.....      ...    ....   ..++++.++.||+|+++.
T Consensus       153 el~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~yd~~~~~------~~~----~~~~---~~sl~ell~~aDvV~lhv  216 (416)
T 3k5p_A          153 EVRGKTLGIVGY-GNIGSQVGNLAESLGM--TVRYYDTSDKL------QYG----NVKP---AASLDELLKTSDVVSLHV  216 (416)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCCC------CBT----TBEE---CSSHHHHHHHCSEEEECC
T ss_pred             cCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCcchh------ccc----CcEe---cCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999998888  99999986311      000    0111   236678899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~  150 (256)
                      ....   +++ .++  |    .   +.+....|.+++|+++  .++|.
T Consensus       217 Plt~---~T~-~li--~----~---~~l~~mk~gailIN~aRG~vvd~  251 (416)
T 3k5p_A          217 PSSK---STS-KLI--T----E---AKLRKMKKGAFLINNARGSDVDL  251 (416)
T ss_dssp             CC---------CCB--C----H---HHHHHSCTTEEEEECSCTTSBCH
T ss_pred             CCCH---HHh-hhc--C----H---HHHhhCCCCcEEEECCCChhhhH
Confidence            4211   011 011  1    1   2344446889999997  46663

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.35  E-value=0.016  Score=53.87  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe----cCCccccc-------cCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQA-------LED   96 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~ea-------l~~   96 (256)
                      ...+.|+||+|.+|..++..|+.+|.  +|+++|.+.......++.+.. .  ...+.    ...++.+.       +.+
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~-~--~~~~~~Dvtd~~~v~~~~~~~~~~~g~  287 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKV-G--GTALTLDVTADDAVDKITAHVTEHHGG  287 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHH-T--CEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHc-C--CeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence            35788999999999999999999998  899999864222111111110 0  01111    01122222       223


Q ss_pred             -CCEEEEecCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 025206           97 -SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (256)
Q Consensus        97 -aDvVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~---p~~~iiv~tN  146 (256)
                       .|+||++||......   .+.   ...+.-|+.-...+.+.+....   +.+.||++|.
T Consensus       288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence             999999999764321   222   2346677777777777776542   4567777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-45
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	2e-36
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	6e-35
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	4e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	3e-31
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	1e-30
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-30
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	1e-30
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	6e-30
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	1e-29
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	2e-29
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	6e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	2e-27
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	1e-26
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	4e-26
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	5e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	3e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	9e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	3e-23
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	8e-22
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	3e-21
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	4e-20
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	9e-19
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-18
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	9e-17
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	7e-15
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	7e-13
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	2e-12
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	6e-11
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	8e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	1e-10
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-10
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	2e-10
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	3e-10
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	7e-10
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	8e-10
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	9e-10
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	3e-09
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	3e-09
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	4e-09
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	4e-09
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	8e-09
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	5e-08
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	5e-08
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	8e-08

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  147 bits (371), Expect = 2e-45
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
           ST+PI AEVFKK G YN  K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 2e-36
 Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           VN+TV IAAEV KKAG Y++ KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  121 bits (304), Expect = 6e-35
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSE---V 81
            +AV GAAG I   L   +    +        L L     +      V      S    +
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
                     +  ED D  ++    PR PGM R  L +IN  I  D   A+      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 141 VNMISNPVNSTVPIAAE 157
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  113 bits (283), Expect = 4e-32
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN 87
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H     +    +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                 L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    I      K       ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  110 bits (277), Expect = 3e-31
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+AV+GA G +G  LA       +   + L DIA         D+ H ++        G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  +I+NP
Sbjct: 62  DDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           V+    IA  V +K     E ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  109 bits (274), Expect = 1e-30
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 30  KVAVLGAAGGIGQPLALL-----MKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG- 83
           +V V GAAG I   L        +        L L DI    GV   V        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 84  --YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI- 140
              +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY   ++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 141 VNMISNPVNSTVPIAAEVFKK 161
           V ++ NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  109 bits (273), Expect = 1e-30
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV+V+GAAG +G      + L  +   +   DI         VG     +    Y  N +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP--DKEDDTVGQAADTNHGIAYDSNTR 59

Query: 90  LG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           +     +    SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +      +AG  + +++ G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  109 bits (272), Expect = 1e-30
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ V+GA G +G   A  +    L   L L D+      G A D+            +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    +A           ++++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  107 bits (267), Expect = 6e-30
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           K+ ++G  G +G   A  + +      + L D+         +  I+             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
               L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
               +    F K    + +K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  106 bits (266), Expect = 1e-29
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRSEVAGYM 85
            KVA++GA G +G   A  M L    + L L D+      G A D+ H +    +++ Y 
Sbjct: 2   SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + ++ ++S
Sbjct: 61  GDYS---DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +     +K       K+ G
Sbjct: 118 NPVDIITYMI----QKWSGLPVGKVIG 140

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (266), Expect = 2e-29
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIANTPGVAADVGHINTRSE------V 81
           +VAV GAAG IG  L   +    ++   +  +  +   P     +  +    E      +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
           AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKK 169
           V ++ NP N+   IA   +K A   N + 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  103 bits (258), Expect = 2e-28
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +K++++GA G +G   A  +    L   + L  +   P G A D+   +        +  
Sbjct: 2   KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP
Sbjct: 61  TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           +++   +AAEV      + ++++ G
Sbjct: 121 LDAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  102 bits (255), Expect = 6e-28
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H N  +     
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173
            + +++NPV+  V +      +     + K+ G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  100 bits (251), Expect = 2e-27
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 25  SVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG 83
           S+P+  KV ++G  G +G   A  M    +     + D+         +   + ++  A 
Sbjct: 1   SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAP 59

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +NPV+    I      K   + ++++ G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIG 144

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 1e-26
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS 79
              +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   
Sbjct: 14  EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL 72

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +    + + +      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+ 
Sbjct: 73  QTPKIVAD-KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+ ++SNPV+    +      K     + ++ G
Sbjct: 132 IIIVVSNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 97.5 bits (242), Expect = 4e-26
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +KVA++G+ G IG  +  L  L  L   +    +   P G A D+ H+ +  +    +  
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66

Query: 88  D-QLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +     AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   +
Sbjct: 67  EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 126

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +++NP++  V +  E            + G
Sbjct: 127 IVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.1 bits (236), Expect = 5e-25
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV 81
           + +   K+ V+G  G +G   A+ + L  L   LAL D       G A D+ H +     
Sbjct: 15  DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              +   +      +S +VII AG     G TR DL   N  I+K +   + +  P+  +
Sbjct: 74  PKIV-FGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +++NPV+    +      K   +   ++ G
Sbjct: 133 IVVTNPVDILTYVVW----KISGFPVGRVIG 159

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 92.4 bits (229), Expect = 3e-24
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
            +V V+GA G +G      +    +   + L D   +   G A D  H    +     + 
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           +        D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +N
Sbjct: 66  HGD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    I      K      +++ G
Sbjct: 125 PVD----ILTYATWKFSGLPHERVIG 146

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 91.4 bits (226), Expect = 9e-24
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN------TRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    ++      +          TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+NPV+     A         +   ++FG
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.8 bits (222), Expect = 3e-23
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGN 87
           RK+ ++G  G +G  +A  +    +       D       A  +   +  + +  +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 88  DQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                AL D+DVVI   G  +     P   R       + +V+ + + + +   + ++ +
Sbjct: 61  INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           ISNPV+    +   +F+    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 86.7 bits (214), Expect = 8e-22
 Identities = 49/83 (59%), Positives = 60/83 (72%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD+VRA  F A    ++ A V+VPV+GGHAG TI+PL SQ TPK +   + +  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 233 RTQDGGTEVVEAKAGKGSATLSM 255
           R Q+ GTEVV+AKAG GSATLSM
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSM 83

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 85.1 bits (210), Expect = 3e-21
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 30  KVAVLGAAGGIGQPLALLM----KLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY 84
           ++AV+G  G    P  +        +  +  +  YDI      +  D      +      
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA----------- 133
           + +     A+ D+  VI         G   D+   +  G++    + +            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 134 --------KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                   +   NA +   +NP         E  +       +K  G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 82.1 bits (202), Expect = 4e-20
 Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD++R+ TF A        EV VPV+GGH+G+TILPL SQ     +  ++++  LTK
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTK 59

Query: 233 RTQDGGTEVVEAKAGKGSATLSM 255
           R Q+ GTEVVEAKAG GSATLSM
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSM 82

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 78.9 bits (194), Expect = 9e-19
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI----ANTPGVAADVGHINTRSEV 81
            + + G  G    P   L LL  L    + +L LYD      +    A DV       ++
Sbjct: 5   SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 63

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV---------------- 125
                 D   +A  D D V+    V +      D+   +  G+V                
Sbjct: 64  EFAATTDP-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRS 122

Query: 126 ----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166
                ++   + KY P+A +   SNP          +   +   N
Sbjct: 123 IGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILN 167

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.8 bits (191), Expect = 2e-18
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIANTP--GVAADVGH---INTRSE 80
           K+A +G  G    P     L+ + + L V  L L DI                 +     
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV--------------- 125
                      +AL+ +D V     V       +D+   +  G++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 126 -----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                 D+   + + CP+A +   +NP      +  E   +     ++K+ G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.3 bits (179), Expect = 9e-17
 Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 27  PDRKVAVLGAAGGIGQPLAL---LMKLNPL-VSRLALYDIA--NTPGVAADVGH-INTRS 79
           P  K+ ++GA G     L L   L K   L  S + L DI       +       +    
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI------------------- 120
               +     L   + D+D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 121 -------NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
                        D+   I K  P A     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 68.2 bits (166), Expect = 7e-15
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R ++F A +  V++ ++N  V+GGH    +  +         ++D    E I  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMA 256
           +RT++GG E+VE    +GSA  + A
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPA 87

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R +TF A +A V+V +V   ++GGH    +            +++    + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMA 256
           +RT+ GG E+V      GSA  + A
Sbjct: 64  ERTRKGGGEIVNLL-KTGSAYYAPA 87

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  RAK   A K  V   +V   ++ G+   T  P  + A  K    +  +    K 
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 234 TQDGGTEVVEA---------KAGKGSATLSMA 256
                 E +           KA K S+ +S A
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAA 92

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 57.5 bits (138), Expect = 6e-11
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD +R +   + K  V+V  V+  ++G H    +           N+ +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             ED K + +  +  G  +++ K           
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSI 94

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDI------ 227
           T LD  R +       +++   V+   +G H G +    +S                   
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 228 -KALTKRTQDGGTEVVEAKAGKGSATLSM 255
             A+ +  + GG  V+  K        + 
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATS 89

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
             LD  R +   A K  ++ +  +  ++G H   ++           +L +         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             E+ K + K   +   EV++ K     A     
Sbjct: 63  DSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSV 96

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +   A   NV+   V+  ++G H G T  P++S A        E +KA  + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 234 TQDGGTEVVE 243
            +D   ++ E
Sbjct: 60  KEDKLVKMFE 69

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +   A +  VNV  V+  + G H    +    S       ++D         
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 225 ---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
              +  + + +  ++   +++  K     A     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSG 95

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------E 225
             LD  R +     +  V+    +  V+G H                 L          +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 226 DIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           D K L K   D   EV++ K     A    
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLS 92

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKAL 230
           FG   LD  R +   + + +  V  V   ++G H G   +P+FS+ +      +      
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 231 TKRTQDGGTEVVEAKAGKGSATLSMA 256
            +   D     ++    KG+     A
Sbjct: 59  EQLLGDLQESAMDVIERKGATEWGPA 84

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.1 bits (129), Expect = 8e-10
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +T  A     +   V+V V+G H    +            L +         
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
            + ++   ++T+    E++E K     A     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAV 94

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 12/74 (16%), Positives = 21/74 (28%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R +     K  VN    +  V+G H   ++            L   +    T +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 234 TQDGGTEVVEAKAG 247
            +     V +    
Sbjct: 63  NKQHWKNVHKQVVE 76

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 8/51 (15%), Positives = 15/51 (29%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD 224
           T LD  R +       +V    V+  ++G H    +            +  
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK 51

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK----- 228
           T LD  RAK   A KA V   +V+   + G+   T +P F  A        E IK     
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 229 --ALTKRTQDGGTEVVEAKAGKGSATLSMA 256
               T   Q  G  +++      S+  S A
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTA 88

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T+LD  R +     + NV+   V+  ++G H G +    +S AT                
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSA 251
            +D+  L    ++   +++  K      
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYG 87

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT----PKANLADEDIKA 229
           T LD  RAK   A K    V  +    V G+   T+ P    A     P   L D +   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMA 256
                          +A   S+  S A
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAA 88

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD +R K   A    V++ EV   ++G H G +++PL S  +       +  +     
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 234 TQDGGTEVVEAKAGKGSATLSMA 256
             +   +V               
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSE 84

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPK 219
           LD  RA +  A K    V+ +    V G+   T+   +  A   
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQID 46

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD---------ED 226
           LD  R K + + K NV   +VN  +VG H    +L           L +          +
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 227 IKALTKRTQDGGTEVV 242
           ++A+  RT +   E+V
Sbjct: 63  LEAIFDRTVNTALEIV 78

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 11/80 (13%), Positives = 22/80 (27%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LD  R + + A   +V+  +V   V+G H    +  +         +       +    Q
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 236 DGGTEVVEAKAGKGSATLSM 255
                     +G        
Sbjct: 64  LEEIAEHTKVSGGEIVRFLG 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.93
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.89
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.75
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.67
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.64
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.62
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.61
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.59
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.58
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.57
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.57
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.57
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.57
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.55
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.54
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.53
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.5
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.5
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.49
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.49
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.48
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.46
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.4
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.38
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.36
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.26
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.23
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.12
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.98
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.79
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.76
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.75
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.7
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.65
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.64
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.58
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.55
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.52
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.5
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.44
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.43
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.38
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.36
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.36
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.31
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.31
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.3
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.29
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.22
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.21
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.21
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.19
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.1
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.07
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.07
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.05
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.01
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.01
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.0
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.97
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.95
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.87
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.81
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.74
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.74
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.71
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.7
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.68
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.64
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.59
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.58
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.46
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.44
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.42
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.41
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.41
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.39
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.34
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.23
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.18
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.16
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.11
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.11
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.11
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.1
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.08
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.08
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.08
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.04
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.96
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.94
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.94
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.92
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.91
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.89
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.86
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.85
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.84
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.82
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.82
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.78
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.78
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.78
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.75
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.74
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.73
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.72
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.71
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.7
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.69
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.68
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.68
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.67
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.66
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.65
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.62
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.61
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.61
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.61
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.6
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.6
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.58
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.56
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.56
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.55
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.55
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.51
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.51
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.48
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.42
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.4
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.39
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.38
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.37
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.36
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.3
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.26
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.2
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.19
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.17
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.1
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.09
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.07
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.03
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.03
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.91
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.81
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.8
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.79
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.76
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.69
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.62
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.55
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.53
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.46
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.44
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.38
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.37
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.36
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.35
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.34
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.24
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.22
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.22
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.21
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.2
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.18
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.18
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.17
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.15
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.14
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.1
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.04
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.99
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.99
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.99
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.99
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.93
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.91
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.91
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.78
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.77
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.75
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.75
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.72
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.7
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.66
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.65
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	94.64
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.61
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.58
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.57
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.56
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.4
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.33
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.27
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.2
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.17
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.15
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.12
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.93
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.92
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.87
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.8
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.77
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.75
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.75
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.7
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.69
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.62
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.56
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.49
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.44
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	93.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.29
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.28
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.05
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.89
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.79
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.58
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.35
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.27
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.18
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.12
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.1
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.09
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.82
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.53
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.16
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.99
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.98
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.77
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.76
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.72
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	90.49
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.35
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.13
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.11
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	90.09
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.04
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.94
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	89.92
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.76
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.63
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.32
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.29
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.23
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.16
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.06
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.87
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.79
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.55
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.42
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.36
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	87.25
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.0
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	86.78
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.77
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	86.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.64
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.58
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	86.24
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	86.11
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.02
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.92
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.84
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.59
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.49
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.32
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.24
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.98
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	84.74
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.61
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.2
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.13
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.04
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.91
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.8
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	83.32
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.09
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	83.05
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	82.97
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.72
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.43
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	82.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	82.16
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.94
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	81.39
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.93
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.88
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	80.73
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.68
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.54
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.46

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.5e-37  Score=246.43  Aligned_cols=143  Identities=69%  Similarity=1.112  Sum_probs=133.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~  109 (256)
                      ||+||||+|+||+++|+.|+.+++++|++|+|+++.+++++|++|.........+....+++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999998899999999987655555555456778899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       110 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      +|++|.+++..|.+++++++++|.+++|+++++++|||+|+|+++++++++++++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-36  Score=237.99  Aligned_cols=143  Identities=64%  Similarity=0.984  Sum_probs=130.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+|||++|+||+++++.|+. .++++||+|+|+++ ++|+++||+|.........+.++.+ +++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            7999999779999999998875 47889999999974 6799999999887666666655555 5789999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |+++|++|.|++..|.+++++++++|.+++|++++|++|||+|+|++++++++++.|+||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=1.2e-34  Score=230.54  Aligned_cols=139  Identities=32%  Similarity=0.486  Sum_probs=119.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |.||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|.... ....... +.+ +++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~-~~~-~~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDD-PEICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeec-CCC-HHHhhCCcEEEEec
Confidence            569999998 999999999999999999999999984  78999999997532 2222222 334 46899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |.|+++|++|.|++..|.+++++++++|.+++|++++|++|||+|+|+++   +++.+| ||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~---~~~~sg-~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHV---AQKLTG-LPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHH---HHHHHT-CCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHH---HHHHHC-CChhhccCC
Confidence            99999999999999999999999999999999999999999999975433   455555 999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.9e-34  Score=226.81  Aligned_cols=138  Identities=33%  Similarity=0.532  Sum_probs=119.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||+ |+||+++|+.|+.+++++|++|+|+++  ++|+++||+|...  +...+... +.| +++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~-~~d-~~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GAD-YSLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc-CCC-HHHhccccEEEEec
Confidence            79999998 999999999999999999999999984  7899999999752  22223222 345 47999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |.|+++|++|.+++.+|.+++++++++|.+++|+++++++|||+|+|+++   +++.+| ||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~---~~k~sg-~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESG-KPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHH---HHHHSC-CCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHH---HHHHHC-CChhcEecC
Confidence            99999999999999999999999999999999999999999999975543   455555 999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.4e-34  Score=228.12  Aligned_cols=139  Identities=24%  Similarity=0.364  Sum_probs=121.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      ...||+|||| |+||+++|+.|+++++++||+|+|+++  ++|+++||+|+...  ..+....  .+ +++++|||+||+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~d-~~~l~daDvvvi   80 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE--CC-HHHhccceeEEE
Confidence            4569999998 999999999999999999999999984  78999999997642  2344433  34 478999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      ++|.|++++++|.|++.+|++++++++++|.+++|++++|++|||+|+|+++   +++.+| ||++||||+
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~---~~k~sg-~p~~rViG~  147 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYA---TWKFSG-LPHERVIGS  147 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH---HHHHHT-CCGGGEEEC
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHH---HHHHHC-cChhheecC
Confidence            9999999999999999999999999999999999999999999999975443   456666 999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=227.87  Aligned_cols=143  Identities=27%  Similarity=0.457  Sum_probs=122.5

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCC--CcEEEEecCCccccccCCC
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~a   97 (256)
                      .+...+.+||+|||+ |+||+++++.|+.+++++||+|+|++  +++|+++||+|....  .....  ...+ +++++||
T Consensus        14 ~~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d-~~~~~~a   89 (160)
T d1i0za1          14 EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKD-YSVTANS   89 (160)
T ss_dssp             SCCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSS-GGGGTTC
T ss_pred             ccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccc-hhhcccc
Confidence            344445679999998 99999999999999999999999998  378999999997642  22222  2344 5789999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |+||++||.++++|++|.+++..|.+++++++++|.+++|++++|++|||+|+|+++   +++.+| ||++||||
T Consensus        90 diVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~---~~k~sg-lp~~rViG  160 (160)
T d1i0za1          90 KIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYV---TWKLSG-LPKHRVIG  160 (160)
T ss_dssp             SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH---HHHHHC-CCGGGEEE
T ss_pred             cEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHH---HHHHHC-cCcccccC
Confidence            999999999999999999999999999999999999999999999999999975543   455555 99999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=3.1e-33  Score=222.18  Aligned_cols=137  Identities=33%  Similarity=0.485  Sum_probs=113.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +||+|||+ |+||+++++.|+++++++||+|+|+++  ++++++||+|+... .....+.  .+ +++++|||+||++||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecc
Confidence            59999998 999999999999999999999999984  78999999997542 3344332  23 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      .++++|++|.+++.+|++++++++++|.+++|++++|++|||+|+|+++   +++.+| ||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~---~~k~sg-~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYM---IQKWSG-LPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHH---HHHHHT-CCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHH---HHHHHC-CCccceecC
Confidence            9999999999999999999999999999999999999999999975432   456666 999999997

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.4e-33  Score=221.66  Aligned_cols=136  Identities=33%  Similarity=0.459  Sum_probs=117.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC----chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ||+||||+|+||+++|+.|+++++++|++|+|++.    ++++++||.|... ....+...+  + +++++|||+||++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~--~-~~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG--G-YEDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC--C-GGGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeC--C-HHHhhhcCEEEEec
Confidence            99999966999999999999999999999999862    5789999999543 333444332  4 46899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+|+++   +++.+| ||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~---~~k~sg-~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH---LYEAGD-RSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH---HHHHSS-SCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHH---HHHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999975432   455555 99999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.5e-33  Score=221.36  Aligned_cols=137  Identities=32%  Similarity=0.576  Sum_probs=119.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||+ |+||+++++.|+.+++++||+|+|+++  ++++++|+.|... ........  .+ +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999983  7899999999653 22334333  24 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      .++++|++|.|++.+|.+++++++++|.++||+++++++|||+|+|+++   +++.+| ||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~---~~k~sg-~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYF---FLKESG-MDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH---HHHHHT-CCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHH---HHHHHC-cCccceeCc
Confidence            9999999999999999999999999999999999999999999975433   456666 999999995

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=1.6e-33  Score=224.74  Aligned_cols=141  Identities=26%  Similarity=0.435  Sum_probs=111.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecCCccccccCCCCEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +.+.+||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++||+|.... .....+.  .| +++++|||+||
T Consensus         2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d-~~~~~~adivv   77 (146)
T d1ez4a1           2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVV   77 (146)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--cc-HHHhccccEEE
Confidence            345689999998 999999999999999999999999984  78999999997642 2233333  35 36889999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +++|.|+++|++|.+++..|++++++++++|.+++|++++|++|||+|+|++   .+++.+| ||++||||+
T Consensus        78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~---~~~k~sg-~p~~rViG~  145 (146)
T d1ez4a1          78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTY---ATWKFSG-FPKERVIGS  145 (146)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHH---HHHHHHC-CCGGGEEEC
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHH---HHHHHHC-cCccceecC
Confidence            9999999999999999999999999999999999999999999999997443   3455555 999999997

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1e-32  Score=219.81  Aligned_cols=139  Identities=35%  Similarity=0.574  Sum_probs=117.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC----chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      |||+||||+|+||+++++.|+++++++|++|+|+++    ++|+++||.|...  ...++.+..+++.+++++|||+||+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            799999977999999999999999999999999984    4688999999643  2333333222333579999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |||.|+++|++|.|++..|++++++++++|.+++|++++ ++|||+|+|+++   +++.+| ||++||||
T Consensus        81 tAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~---~~k~sg-~p~~rViG  145 (145)
T d1hyea1          81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYK---ALVDSK-FERNQVFG  145 (145)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHH---HHHHHC-CCTTSEEE
T ss_pred             ecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHH---HHHHHC-cCcccccC
Confidence            999999999999999999999999999999999998764 689999975543   455556 99999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=1.3e-33  Score=225.31  Aligned_cols=137  Identities=20%  Similarity=0.314  Sum_probs=112.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +||+|||+ |+||+++++.|+++++++||+|+|+++  ++++++||+|...  ........  .+ +++++|||+||++|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--ND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cC-HHHhccccEEEEec
Confidence            59999998 999999999999999999999999983  6899999999753  22334333  34 46899999999999


Q ss_pred             CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          105 GVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       105 g~~~----~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |.++    ++|++|.|++..|+++++++++.|+++||++++|++|||+|+||++   +++.+| ||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~---~~k~sg-~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL---FQHVTG-FPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH---HHHHHC-CCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHH---HHHHhC-CCccceeCc
Confidence            9876    6788999999999999999999999999999999999999974432   455555 999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=4.4e-33  Score=221.24  Aligned_cols=138  Identities=33%  Similarity=0.550  Sum_probs=119.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++++++|++|...  ....++.. +.+ +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~-~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe-cCC-HHHhcCCeEEEEEE
Confidence            79999998 999999999999999999999999985  6788899988652  22333322 334 57899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |.|+++|++|.+++.+|+++++++++.|.++||+++++++|||+|+++++   +++.+| ||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~---~~~~sg-~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHV---AWVRSG-LPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHH---HHHHHC-SCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHH---HHHHhC-CChHhEeeC
Confidence            99999999999999999999999999999999999999999999975443   456666 999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-33  Score=225.35  Aligned_cols=141  Identities=27%  Similarity=0.425  Sum_probs=121.9

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC--CchhHHHHHhcccCCC--cEEEEecCCccccccCCCCE
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~--~~~g~~~dl~~~~~~~--~v~~~~~t~d~~eal~~aDv   99 (256)
                      ..++..||+|||+ |+||+++|+.|+.+++++|++|+|++  +++|+++||+|.....  .....  +.+ ++++++||+
T Consensus        15 ~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adi   90 (159)
T d2ldxa1          15 DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKL   90 (159)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEE
T ss_pred             ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccE
Confidence            3346679999998 99999999999999999999999998  3789999999976432  22222  334 578899999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      ||++||.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+|+++   +++.+| ||++||||
T Consensus        91 vvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~---~~k~sg-~p~~rV~G  159 (159)
T d2ldxa1          91 VIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYV---VWKISG-FPVGRVIG  159 (159)
T ss_dssp             EEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHH---HHHHHC-SCTTTEEE
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHH---HHHHHC-cCcccccC
Confidence            9999999999999999999999999999999999999999999999999986543   466666 99999998

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=6.7e-32  Score=216.16  Aligned_cols=138  Identities=33%  Similarity=0.570  Sum_probs=116.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +.||+|||+ |+||+++++.|+++++ +|++|+|+++  ++++++|++|...  ..+..... + +.+++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~-~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-S-NTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-E-CCGGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-c-ccccccCCCcEEEEe
Confidence            369999998 9999999999998886 6999999985  7899999999752  22222222 2 335789999999999


Q ss_pred             cCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          104 AGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       104 ag~~~~~g~~-----r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +|.++++|++     |.+++..|.+++++++++|+++||+++++++|||+|+|+++   +++.+| ||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~---~~~~sg-~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQL---LHQHSG-VPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHH---HHHHHC-CCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHH---HHHHHC-CCchheecc
Confidence            9999999865     99999999999999999999999999999999999975543   345555 999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=1.1e-31  Score=213.19  Aligned_cols=136  Identities=30%  Similarity=0.558  Sum_probs=107.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +||+|||+ |+||+++|+.|+++++. |++|+|+++  ++++++|+.|...  +...++. ++.| +++++|||+||++|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~-~~~d-~~~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT-GTNN-YADTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-EESC-GGGGTTCSEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEE-ecCc-HHHhcCCCEEEEee
Confidence            59999998 99999999999999875 899999984  6889999998753  2222222 1345 46899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      |.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+|+|+   +++.+| ||++||||
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~---~~~~sg-lp~~rViG  141 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYL---AAEVSG-FPKERVIG  141 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHH---HHHHHC-CCGGGEEE
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHH---HHHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999986654   455566 99999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=2.2e-31  Score=214.20  Aligned_cols=141  Identities=30%  Similarity=0.610  Sum_probs=119.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      .+++||+|||+ |.||+++|+.|+++++ .|++|+|+++  ++++++|+.|...  ....... .+++++++++|||+||
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~adiVv   81 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AEYSYEAALTGADCVI   81 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EECSHHHHHTTCSEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEe-ccCchhhhhcCCCeEE
Confidence            35689999998 9999999999999886 4899999984  6899999999642  1112211 2456678999999999


Q ss_pred             EecCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          102 IPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       102 i~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +++|.++++|+     +|.+++..|.++++++++.|.++||+++++++|||+|+|+++   +++.+| ||++||||+
T Consensus        82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~---~~~~sg-~p~~rViG~  154 (154)
T d1pzga1          82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKV---MCEASG-VPTNMICGM  154 (154)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH---HHHHHC-CCGGGEEEC
T ss_pred             EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHH---HHHHhC-cChhcEecC
Confidence            99999999985     899999999999999999999999999999999999975543   455566 999999996

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=2.8e-30  Score=211.67  Aligned_cols=147  Identities=25%  Similarity=0.276  Sum_probs=122.4

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHcCCCcc-----EEEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccc
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQA   93 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~-----eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~ea   93 (256)
                      +++.++.||+|+||+|+||+++++.|++.++++     +++|+|+++    +++.++|++|+.++..-.. ..+++.+++
T Consensus        19 ~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~-~~~~~~~~~   97 (175)
T d7mdha1          19 KSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV-SIGIDPYEV   97 (175)
T ss_dssp             --CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE-EEESCHHHH
T ss_pred             hccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCc-cccccchhh
Confidence            444467799999988999999999999876643     889999874    4788999999876542222 224566889


Q ss_pred             cCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      ++|+|+||+++|.|++||++|.|++..|.+++++++++|.+++| +++|+++|||+|.|+++   ++++.+++|++||+|
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~i---a~k~a~~ip~~~i~~  174 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALI---CLKNAPDIPAKNFHA  174 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEE
T ss_pred             ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHH---HHHHCCCCCHHHEeC
Confidence            99999999999999999999999999999999999999999996 89999999999975543   356566799999998


Q ss_pred             E
Q 025206          173 V  173 (256)
Q Consensus       173 ~  173 (256)
                      |
T Consensus       175 m  175 (175)
T d7mdha1         175 L  175 (175)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.6e-30  Score=207.77  Aligned_cols=143  Identities=29%  Similarity=0.456  Sum_probs=117.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccE-----EEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~e-----V~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~   96 (256)
                      .+|+||+||||+|+||+++++.|++++++++     +.|+|.++    +.+.++|+.++.... .+....+++.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccc-ccccccCCchhhhccc
Confidence            4688999999889999999999999988664     45555542    467788888876543 2222224455789999


Q ss_pred             CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEE
Q 025206           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus        97 aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG  172 (256)
                      ||+||+++|.+++||++|.|++..|++++++++++|.+++| +++++++|||+|+|+++   ++++.++||++|||.
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~---a~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALI---AYKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHH---HHHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999985 79999999999976554   467666699999985

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=1.3e-29  Score=203.69  Aligned_cols=143  Identities=27%  Similarity=0.341  Sum_probs=115.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCCC----chhHHHHHhcccCCCcEEEEecCCccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~a   97 (256)
                      +|+||+||||+|+||+++++.|++++++     .+++|+|+++    +++..+|+.++..+..... ....+.+++++|+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDV-IATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEE-EEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccc-ccCcccccccCCc
Confidence            6899999998899999999999987654     3799999985    3445566667655432222 2244557899999


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      |+||+++|.|+++|++|.|++..|.+++++++++|.+++|+ +++|++|||+|+||++   +++.++++|++||+|+
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v---~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLT---ASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHH---HHHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999975 5688899999975443   3555646999999986

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1e-26  Score=189.43  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=107.4

Q ss_pred             CceEEEEcCCCCcHHHH--HHHHHcCCC--ccEEEEEeCCC--chhHHHHHhccc----CCCcEEEEecCCccccccCCC
Q 025206           28 DRKVAVLGAAGGIGQPL--ALLMKLNPL--VSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~l--a~~l~~~~~--~~eV~LiD~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~a   97 (256)
                      ++||+|||| |++|.+.  +..+.....  .+||+|+|+++  .++.++|+.|..    ....++... ++|.+++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            479999998 9888653  344444332  46999999985  567888887642    122334332 55778899999


Q ss_pred             CEEEEecCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHH
Q 025206           98 DVVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~  157 (256)
                      |+||+++|.+++++++|.|+                    +.+|++++++++++|+++|||+|+|++|||+|.    +++
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv----~t~  154 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGM----VTE  154 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH----HHH
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHH----HHH
Confidence            99999999988777666555                    578999999999999999999999999999995    455


Q ss_pred             HHHHhCCCCCCcEEEEe
Q 025206          158 VFKKAGTYNEKKLFGVT  174 (256)
Q Consensus       158 ~~~~~~~~~~~kviG~t  174 (256)
                      ++++.  +|++||||+|
T Consensus       155 ~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         155 AVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHH--CCCCCEEECC
T ss_pred             HHHHH--CCCCCEEeeC
Confidence            55555  6889999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.5e-25  Score=181.93  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=105.5

Q ss_pred             CCceEEEEcCCCCcHHHHHH--HHHcCC-C-ccEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~--~l~~~~-~-~~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      +..||+|||| |++|.+.+.  .+.... + .+||+|+|+++  +++.+.++.+..  .....+... ++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCCC
Confidence            4579999998 999987543  332222 2 47999999994  566566666542  222233222 457789999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHH--------------------HHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHH
Q 025206           99 VVIIPAGVPRKPGMTRDDLFN--------------------INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (256)
Q Consensus        99 vVIi~ag~~~~~g~~r~d~~~--------------------~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~  158 (256)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||++|+|++|||+|.    ++++
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv----~t~~  155 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAI----VAEA  155 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHH----HHHH
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHH----HHHH
Confidence            999999999999988888754                    5699999999999999999999999999995    4555


Q ss_pred             HHHhCCCCCCcEEE
Q 025206          159 FKKAGTYNEKKLFG  172 (256)
Q Consensus       159 ~~~~~~~~~~kviG  172 (256)
                      +++.  +|++|||.
T Consensus       156 ~~k~--~P~~rVI~  167 (167)
T d1u8xx1         156 TRRL--RPNSKILN  167 (167)
T ss_dssp             HHHH--STTCCEEE
T ss_pred             HHHH--CCcccccC
Confidence            5555  69999984

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.5e-26  Score=187.15  Aligned_cols=137  Identities=19%  Similarity=0.256  Sum_probs=101.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcC----CCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLN----PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~----~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      |||+|||| |++|++.++....+    ...+||+|+|+++. .+.+.|+.|........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999998 99999887653322    22579999999842 23456776654332233333 45668899999999999


Q ss_pred             cCCCCCCCCCHHHHHH--------------------HHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhC
Q 025206          104 AGVPRKPGMTRDDLFN--------------------INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~--------------------~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~  163 (256)
                      +|.+++++++|.+++.                    ++++.+.++.+ +.++||++|+|++|||+|    ++++++++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvd----iit~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSG----HITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHH----HHHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHH----HHHHHHHHh-
Confidence            9999888777766544                    45666766655 778899999999999999    456666666 


Q ss_pred             CCCCCcEEEEe
Q 025206          164 TYNEKKLFGVT  174 (256)
Q Consensus       164 ~~~~~kviG~t  174 (256)
                       +|++||||+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5889999987

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-23  Score=171.59  Aligned_cols=136  Identities=21%  Similarity=0.186  Sum_probs=100.5

Q ss_pred             CceEEEEcCCCCcHHHHHH--HHH-cCCC-ccEEEEEeCCC--chhHHHHHhccc--CCCcEEEEecCCccccccCCCCE
Q 025206           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPL-VSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~--~l~-~~~~-~~eV~LiD~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      .|||+|||| |++|++.+.  .++ ..++ .+||+|+|+++  +++...|+.|..  .....++.. ++|++++++|||+
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~-~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK-TMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTCSE
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE-eCChhhcccCCCe
Confidence            589999998 999987544  233 3333 35999999993  677788888753  223344332 5688899999999


Q ss_pred             EEEecCC------------------CCCCCCCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchH
Q 025206          100 VIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP  153 (256)
Q Consensus       100 VIi~ag~------------------~~~~g~~r~d~--------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~  153 (256)
                      ||++++.                  ++.++++|.|.        ..+|+++++++++.|+++||++|+|++|||+|.   
T Consensus        80 Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv---  156 (171)
T d1obba1          80 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE---  156 (171)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH---
T ss_pred             EeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHH---
Confidence            9998764                  34445555443        568999999999999999999999999999996   


Q ss_pred             HHHHHHHHhCCCCCCcEEE
Q 025206          154 IAAEVFKKAGTYNEKKLFG  172 (256)
Q Consensus       154 i~~~~~~~~~~~~~~kviG  172 (256)
                       +++++++.+   +-|+||
T Consensus       157 -~t~~~~k~~---~~k~iG  171 (171)
T d1obba1         157 -GTTLVTRTV---PIKAVG  171 (171)
T ss_dssp             -HHHHHHHHS---CSEEEE
T ss_pred             -HHHHHHHhc---CCCccC
Confidence             444544443   248887

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=4.5e-19  Score=143.38  Aligned_cols=81  Identities=58%  Similarity=0.865  Sum_probs=75.5

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceec
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~  253 (256)
                      |.|||+||+++||++++++|++|+++|+||||+++++||||++.++.+++.++++++.+++++.|++|++.|++.+++.+
T Consensus         2 T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~~   81 (169)
T d1mlda2           2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATL   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHhH
Confidence            78999999999999999999999999999999999999999999888889999999999999999999999987776655


Q ss_pred             c
Q 025206          254 S  254 (256)
Q Consensus       254 s  254 (256)
                      |
T Consensus        82 ~   82 (169)
T d1mlda2          82 S   82 (169)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.2e-17  Score=132.89  Aligned_cols=82  Identities=56%  Similarity=0.841  Sum_probs=74.1

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcCCCcceec
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~~~  253 (256)
                      |.||++||+++||+++|++|++|+++|+||||+++++||+|++... .++.++++++.+++++.|++|++.|+|++++.+
T Consensus         2 T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~~-~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~~   80 (167)
T d2cmda2           2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTKRIQNAGTEVVEAKAGGGSATL   80 (167)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTTC-CCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccCC-CCcHHHHHHHHHHHHhhhhhhhhhhccCcchHH
Confidence            6799999999999999999999999999999999999998877653 478888999999999999999999988888777


Q ss_pred             ccC
Q 025206          254 SMA  256 (256)
Q Consensus       254 s~~  256 (256)
                      |.|
T Consensus        81 ~~a   83 (167)
T d2cmda2          81 SMG   83 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.64  E-value=4.9e-17  Score=130.59  Aligned_cols=79  Identities=34%  Similarity=0.533  Sum_probs=68.8

Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----CCCHHHHHHHHHHHHhhHHHHHhhcCCCc
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  249 (256)
                      +||++||+++||+++|++|++|+++|||||| +++||+||++++++     .++++.++++.++++++|++|++.+ |++
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHG-DAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            6999999999999999999999999999996 58999999999963     2567778899999999999999976 455


Q ss_pred             ceeccc
Q 025206          250 SATLSM  255 (256)
Q Consensus       250 s~~~s~  255 (256)
                      |+++++
T Consensus        81 sa~~a~   86 (163)
T d1guza2          81 SAFYAP   86 (163)
T ss_dssp             CCCHHH
T ss_pred             CcchhH
Confidence            666554

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.62  E-value=1e-16  Score=128.78  Aligned_cols=79  Identities=33%  Similarity=0.481  Sum_probs=68.8

Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----CCCHHHHHHHHHHHHhhHHHHHhhcCCCc
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  249 (256)
                      +||++||+++||+++|++|++|+++|||||| +++||+||++++++     .++++.++++.++++++|++|++.+ +++
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHG-DEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSG-GGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            5999999999999999999999999999996 59999999999863     2466778999999999999999876 456


Q ss_pred             ceeccc
Q 025206          250 SATLSM  255 (256)
Q Consensus       250 s~~~s~  255 (256)
                      |+++++
T Consensus        81 s~~~a~   86 (164)
T d1uxja2          81 SAYYAP   86 (164)
T ss_dssp             CCCHHH
T ss_pred             cccchH
Confidence            677664

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.61  E-value=1.8e-16  Score=127.92  Aligned_cols=73  Identities=23%  Similarity=0.398  Sum_probs=64.5

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-------------CCCHHHHHHHHHHHHhhHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-------------NLADEDIKALTKRTQDGGTE  240 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-------------~~~~~~~~~i~~~v~~~~~~  240 (256)
                      |.||++||+++||+++|+++++|+++|||||| +++||+||++++++             .++.+.++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHG-DSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSS-TTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            57999999999999999999999999999996 59999999999842             13456678999999999999


Q ss_pred             HHhhcCC
Q 025206          241 VVEAKAG  247 (256)
Q Consensus       241 i~~~k~~  247 (256)
                      |+++||.
T Consensus        80 i~~~kg~   86 (170)
T d1llda2          80 IINGKGA   86 (170)
T ss_dssp             HHTSCCS
T ss_pred             HHhhhcc
Confidence            9998853

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.59  E-value=3.7e-16  Score=126.50  Aligned_cols=80  Identities=25%  Similarity=0.400  Sum_probs=66.4

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHh
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~  243 (256)
                      |+||++||+++||+++|++|++|+++|||||| +++||+||++++++          ....++..+.....+.+|.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHG-DCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCC-CccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            78999999999999999999999999999996 59999999999853          13445567778888888888888


Q ss_pred             hcCCCcceeccc
Q 025206          244 AKAGKGSATLSM  255 (256)
Q Consensus       244 ~k~~~~s~~~s~  255 (256)
                      .+ +++|+++++
T Consensus        81 ~~-~~gst~~~~   91 (174)
T d1pzga2          81 FL-GQGSAYYAP   91 (174)
T ss_dssp             HH-SSSCCCHHH
T ss_pred             ee-cccchhhhh
Confidence            76 456666654

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.57  E-value=2.9e-16  Score=125.77  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=62.9

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC------CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      |.||++||+++||+++|++|++|+++|||||| +++||+||++++++ ++      .++.++++.+++++++++|++.||
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg   80 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHG-NSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKG   80 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTT-TTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHHH
Confidence            57999999999999999999999999999996 59999999999853 21      223457999999999999999996


Q ss_pred             C
Q 025206          247 G  247 (256)
Q Consensus       247 ~  247 (256)
                      .
T Consensus        81 ~   81 (163)
T d1hyha2          81 Y   81 (163)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.57  E-value=8.5e-16  Score=123.86  Aligned_cols=72  Identities=22%  Similarity=0.369  Sum_probs=65.2

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHh
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~  243 (256)
                      |.||++||+++||+++|++|++|+++|||||| +++||+||++++++          .++.++++++.+++++.++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHG-DSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSS-SSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCC-CcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            57999999999999999999999999999996 59999999999853          25667788999999999999999


Q ss_pred             hcC
Q 025206          244 AKA  246 (256)
Q Consensus       244 ~k~  246 (256)
                      +|+
T Consensus        80 ~k~   82 (171)
T d1ez4a2          80 LKG   82 (171)
T ss_dssp             HHS
T ss_pred             hhh
Confidence            985

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=8e-16  Score=124.15  Aligned_cols=74  Identities=24%  Similarity=0.377  Sum_probs=65.6

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~  242 (256)
                      |.||++||+++||+++|++|++|+++|||||| ++++|+||++++++           .++.+.++++.+.++..|++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHG-DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCC-CCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            57999999999999999999999999999996 59999999999852           2566778899999999999999


Q ss_pred             hhcCCC
Q 025206          243 EAKAGK  248 (256)
Q Consensus       243 ~~k~~~  248 (256)
                      +.|+..
T Consensus        81 ~~~~~~   86 (172)
T d1a5za2          81 ERKGAT   86 (172)
T ss_dssp             HHHSCC
T ss_pred             eccccc
Confidence            998543

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.57  E-value=6.2e-16  Score=126.90  Aligned_cols=75  Identities=27%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCCC-----CCHH--HHHHHHHHHHhhHHHHHhhc
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN-----LADE--DIKALTKRTQDGGTEVVEAK  245 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~~-----~~~~--~~~~i~~~v~~~~~~i~~~k  245 (256)
                      |.||++||+++||+++|++|++|+. +|||||| ++|||+||++++++.     ..++  ..+++.+.++++|++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHG-ds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCC-CcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999985 6889997 599999999998531     2222  24789999999999999999


Q ss_pred             CCCc
Q 025206          246 AGKG  249 (256)
Q Consensus       246 ~~~~  249 (256)
                      +++.
T Consensus        80 g~s~   83 (188)
T d7mdha2          80 GRSS   83 (188)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            7654

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.55  E-value=6.5e-16  Score=124.50  Aligned_cols=72  Identities=28%  Similarity=0.475  Sum_probs=61.5

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i  241 (256)
                      |.||++||+++||+++|++|++|+++|||||| ++++|+||++++++ +           ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg-~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHG-DSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSS-SSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCC-CCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            57999999999999999999999999999996 59999999999852 1           23445689999999999999


Q ss_pred             HhhcC
Q 025206          242 VEAKA  246 (256)
Q Consensus       242 ~~~k~  246 (256)
                      +++|+
T Consensus        80 ~~~~~   84 (169)
T d1y6ja2          80 IKNKG   84 (169)
T ss_dssp             HHHTS
T ss_pred             hhhhh
Confidence            99885

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.54  E-value=1.8e-15  Score=120.42  Aligned_cols=73  Identities=22%  Similarity=0.398  Sum_probs=65.5

Q ss_pred             EEeechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC---CCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          172 GVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~---~~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      | |+||++||+++||+++|++|++|+++|||||| ++++|+||++.++.   ....++++++.+.+++.++++++.++
T Consensus         2 G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (161)
T d1o6za2           2 G-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHG-DAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKG   77 (161)
T ss_dssp             C-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             C-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCC-CceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhhh
Confidence            5 78999999999999999999999999999996 59999999999853   25667788999999999999999885

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=1.5e-15  Score=123.57  Aligned_cols=78  Identities=27%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEE-EEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEV  241 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i  241 (256)
                      |.||++||+++||+++|++|++|+++ |||||| +++||+||++++++ +          ++....+++.+.+++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG-~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHS-STQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCC-CcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            67999999999999999999999986 559996 59999999999853 2          22333578999999999999


Q ss_pred             HhhcCCCcceecc
Q 025206          242 VEAKAGKGSATLS  254 (256)
Q Consensus       242 ~~~k~~~~s~~~s  254 (256)
                      ++.|+++  +++|
T Consensus        80 ~~~~~~s--s~~~   90 (179)
T d5mdha2          80 IKARKLS--SAMS   90 (179)
T ss_dssp             HHHHSSC--CCHH
T ss_pred             hhccCcc--hHHH
Confidence            9998654  4444

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.50  E-value=6.1e-15  Score=118.27  Aligned_cols=71  Identities=30%  Similarity=0.391  Sum_probs=63.2

Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC----------CCCHHHHHHHHHHHHhhHHHHHhh
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~  244 (256)
                      .||++||+++||+++|++|++|+++|||||| ++++|+||++++++          ...+++++++.+.++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHG-NKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            5899999999999999999999999999996 59999999998742          245667789999999999999999


Q ss_pred             cC
Q 025206          245 KA  246 (256)
Q Consensus       245 k~  246 (256)
                      |+
T Consensus        81 ~~   82 (165)
T d1t2da2          81 HA   82 (165)
T ss_dssp             TS
T ss_pred             cc
Confidence            85

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.50  E-value=9.2e-16  Score=123.31  Aligned_cols=75  Identities=24%  Similarity=0.403  Sum_probs=59.8

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C---C---CHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L---ADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~---~---~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      |.||++||+++||+++|++|++|+++|||||| +++||+||++++++ +   +   ....++++.++++++++++++.|+
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~   81 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHG-DSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKG   81 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhcc
Confidence            68999999999999999999999999999996 59999999999853 1   1   223357899999999999999886


Q ss_pred             CCc
Q 025206          247 GKG  249 (256)
Q Consensus       247 ~~~  249 (256)
                      +..
T Consensus        82 ~~~   84 (168)
T d1hyea2          82 GSE   84 (168)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            554

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.49  E-value=6.5e-15  Score=118.03  Aligned_cols=73  Identities=26%  Similarity=0.355  Sum_probs=62.2

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVV  242 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~  242 (256)
                      |.||++||+++||+++|++|++|+++|||||| ++++|+||++++++ +          ...+..+++.+.++..+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHG-DTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            57999999999999999999999999999996 59999999999852 1          112345789999999999999


Q ss_pred             hhcCC
Q 025206          243 EAKAG  247 (256)
Q Consensus       243 ~~k~~  247 (256)
                      +.|+.
T Consensus        80 ~~~~~   84 (168)
T d1ldna2          80 EKKGA   84 (168)
T ss_dssp             HHHSC
T ss_pred             Hhhcc
Confidence            99864

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.49  E-value=3.6e-15  Score=118.14  Aligned_cols=66  Identities=20%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             eechHHHHHHHHHHHcCCCCCce-eEEEEeCCCCCceeecccccccCCCCCHHHHHHHHHHHHhhHHHHHhhcC
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v-~~~v~G~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      |.|||+||++.|++..+   .++ ++||+|||| +++||+||.+++++.   .++++|.+++++.|++|+++||
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeHG-ds~vp~~S~~~i~g~---~~~~~i~~~v~~~g~eIi~~kG   68 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEHG-DSMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKRKG   68 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCSS-TTCEECGGGCCCBSC---CCHHHHHHHHHTTHHHHHHHHS
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecCC-CccccccccccccCc---cchhHhHHHHHHHHHHhhhhcc
Confidence            57999999999987654   445 899999996 699999999998643   3467899999999999999995

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.48  E-value=8.9e-15  Score=117.79  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=64.3

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C-----------CCHHHHHHHHHHHHhhHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~-----------~~~~~~~~i~~~v~~~~~~i  241 (256)
                      |.||++||+++||+++|++|++|+++|||||| +++||+||++++++ +           .+.++++++.+++++.++++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHG-DSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSS-TTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCC-CcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            57999999999999999999999999999997 58999999999852 1           23345689999999999999


Q ss_pred             HhhcCCC
Q 025206          242 VEAKAGK  248 (256)
Q Consensus       242 ~~~k~~~  248 (256)
                      ++.|++.
T Consensus        82 ~~~~~~s   88 (172)
T d1i0za2          82 IKLKGYT   88 (172)
T ss_dssp             HHHHSSC
T ss_pred             eeccccc
Confidence            9999644

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.46  E-value=9.8e-16  Score=123.67  Aligned_cols=73  Identities=23%  Similarity=0.398  Sum_probs=61.9

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C----------CCHHHHHHHHHHHHhhHHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVV  242 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~----------~~~~~~~~i~~~v~~~~~~i~  242 (256)
                      |.||++||+++||+++|++|++|+++|||||| ++++|+||++++++ +          ++.+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSS-SSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            57999999999999999999999999999996 59999999999842 1          122335678899999999999


Q ss_pred             hhcCC
Q 025206          243 EAKAG  247 (256)
Q Consensus       243 ~~k~~  247 (256)
                      ++||.
T Consensus        80 ~~kg~   84 (172)
T d1llca2          80 KLKGA   84 (172)
T ss_dssp             SSSSC
T ss_pred             Hhhhh
Confidence            98853

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.6e-14  Score=113.28  Aligned_cols=74  Identities=26%  Similarity=0.379  Sum_probs=62.5

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-CC-----------CHHHHHHHHHHHHhhHHHH
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL-----------ADEDIKALTKRTQDGGTEV  241 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~~-----------~~~~~~~i~~~v~~~~~~i  241 (256)
                      |.||++||+++||+++|++|++|+++||||||+ +++|+||++++++ ++           ..+..+++....+..++++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            579999999999999999999999999999975 8899999999852 21           1223468999999999999


Q ss_pred             HhhcCCC
Q 025206          242 VEAKAGK  248 (256)
Q Consensus       242 ~~~k~~~  248 (256)
                      ++.|++.
T Consensus        82 ~~~k~~s   88 (172)
T d2ldxa2          82 LDMKGYT   88 (172)
T ss_dssp             HHHHSSC
T ss_pred             hhcccch
Confidence            9998644

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.38  E-value=4.5e-14  Score=113.21  Aligned_cols=73  Identities=22%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             eechHHHHHHHHHHHcCCCCCceeEEEEeCCCCCceeecccccccCC-C--------CCHHHHHHHHHHHHhhHHHHHhh
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N--------LADEDIKALTKRTQDGGTEVVEA  244 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~Hg~~~~vp~~s~~~~~~-~--------~~~~~~~~i~~~v~~~~~~i~~~  244 (256)
                      |.||++||+++||++++++|++|+++|||||| ++++|+||++.+++ +        .+.++..++...++.++++++++
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHG-DSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSS-TTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-ccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            57999999999999999999999999999997 58899999999852 1        22333457778888899999998


Q ss_pred             cCC
Q 025206          245 KAG  247 (256)
Q Consensus       245 k~~  247 (256)
                      |+.
T Consensus        82 ~~s   84 (169)
T d1ldma2          82 KGY   84 (169)
T ss_dssp             HSS
T ss_pred             ccc
Confidence            854

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=1.1e-13  Score=111.56  Aligned_cols=80  Identities=26%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             EeechHHHHHHHHHHHcCCCCCceeEE-EEeCCCCCceeecccccccCC-C---C-CHH-HHHHHHHHHHhhHHHHHhhc
Q 025206          173 VTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N---L-ADE-DIKALTKRTQDGGTEVVEAK  245 (256)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~vp~~s~~~~~~-~---~-~~~-~~~~i~~~v~~~~~~i~~~k  245 (256)
                      +|.||++||+++||++++++|++|+++ |||||| ++++|+||++++++ +   + .+. +..+..++....+.+++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG-~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS-STMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecC-ccEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            378999999999999999999999986 679997 59999999999863 1   2 222 23455666666666666665


Q ss_pred             CCCcceeccc
Q 025206          246 AGKGSATLSM  255 (256)
Q Consensus       246 ~~~~s~~~s~  255 (256)
                      ++.  +++|+
T Consensus        80 ~~~--s~~~~   87 (173)
T d1y7ta2          80 GAS--SAASA   87 (173)
T ss_dssp             SSC--CHHHH
T ss_pred             ccC--chhhH
Confidence            444  44443

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.26  E-value=1.6e-12  Score=104.23  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             echHHHHHHHHHHHcCCCCCceeE-EEEeCCCCCceeecccccccCCC-C-----C-HHHHHHHHHHHHhhHHHHHhhcC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN-L-----A-DEDIKALTKRTQDGGTEVVEAKA  246 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~vp~~s~~~~~~~-~-----~-~~~~~~i~~~v~~~~~~i~~~k~  246 (256)
                      .||++||+++||+++|++|++|++ +|||||| ++++|+||++++++. +     + ....+++.+.+++.+.++++.++
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG-~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS-PTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARG   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS-TTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCC-CcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHHh
Confidence            389999999999999999999986 6779996 599999999998531 1     1 22235677788888888888885


Q ss_pred             CC
Q 025206          247 GK  248 (256)
Q Consensus       247 ~~  248 (256)
                      +.
T Consensus        81 ~~   82 (171)
T d1b8pa2          81 VS   82 (171)
T ss_dssp             SC
T ss_pred             hh
Confidence            54

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-11  Score=99.50  Aligned_cols=118  Identities=17%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--ch---hHH----HHHhcccC--------------CCcEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP---GVA----ADVGHINT--------------RSEVAGYM   85 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~---g~~----~dl~~~~~--------------~~~v~~~~   85 (256)
                      +||+|||| |.+|+.+|..++..|+  +|+++|+++  +.   ...    ..+.....              ..++..  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            59999998 9999999999999999  999999983  11   100    01110000              012433  


Q ss_pred             cCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCC
Q 025206           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGT  164 (256)
Q Consensus        86 ~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~  164 (256)
                       ++|+.+++++||+|+.++              .+|+++.+++...+++++| ++++  +||.+...   ++++....  
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~~--  137 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQ---ITSIANAT--  137 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSC---HHHHHTTS--
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccc---cchhhhhc--
Confidence             457778899999999995              2457889999999999995 5554  89988763   45665544  


Q ss_pred             CCCCcEEEE
Q 025206          165 YNEKKLFGV  173 (256)
Q Consensus       165 ~~~~kviG~  173 (256)
                      ..|+|++|+
T Consensus       138 ~~p~r~ig~  146 (192)
T d1f0ya2         138 TRQDRFAGL  146 (192)
T ss_dssp             SCGGGEEEE
T ss_pred             cCHhHEEee
Confidence            468899999

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.12  E-value=3.9e-11  Score=97.48  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-c----hhHHH----HHhc-ccC--------CCcEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T----PGVAA----DVGH-INT--------RSEVAGYMGND   88 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~----~g~~~----dl~~-~~~--------~~~v~~~~~t~   88 (256)
                      +-.||+|||| |.+|+.+|..++..|+  +|+++|++. .    .....    ++.. ...        ..++..   +.
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---cc
Confidence            3458999998 9999999999999999  999999983 1    11111    1111 110        112433   33


Q ss_pred             ccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        89 d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      + .+++.+||+||.++.              +|+++.+++.++|++++| ++++  +||.+...   ++++....  -.|
T Consensus        77 ~-~~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~---i~~la~~~--~~p  134 (186)
T d1wdka3          77 S-YGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTIS---ISLLAKAL--KRP  134 (186)
T ss_dssp             S-STTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHGGGC--SCG
T ss_pred             c-cccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCeeE--Eecccccc---HHHHHHhc--cCc
Confidence            4 357899999999852              357889999999999995 5554  89988763   45665554  357


Q ss_pred             CcEEEE
Q 025206          168 KKLFGV  173 (256)
Q Consensus       168 ~kviG~  173 (256)
                      +|++|+
T Consensus       135 ~r~~g~  140 (186)
T d1wdka3         135 ENFVGM  140 (186)
T ss_dssp             GGEEEE
T ss_pred             hheEee
Confidence            899998

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.98  E-value=1.5e-09  Score=88.84  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHh----------------cccCCCcEEEEecCCcccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG----------------HINTRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~----------------~~~~~~~v~~~~~t~d~~e   92 (256)
                      |||+|||+ |+||.++|..|+.+|+  +|+.+|+++.  ....|.                .......+..   ++++.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            79999998 9999999999999999  9999999831  111111                1111223332   457788


Q ss_pred             ccCCCCEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCCc
Q 025206           93 ALEDSDVVIIPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNST  151 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd~~  151 (256)
                      ++++||+++++.++|.... ......+   ..+.+.+.+.++...++.++++- |-|...+
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt  130 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTV  130 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHH
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcch
Confidence            9999999999999986433 2222222   23444555555555566666554 4566643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.5e-09  Score=90.26  Aligned_cols=163  Identities=12%  Similarity=0.091  Sum_probs=100.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      +||.|+||+|++|++++..|+.+|+  +|+.+|... ...  ..+.+......+.... ...++.++.++|+||++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~   76 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK--RNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPA   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG--GGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCH--HHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccC
Confidence            5999999999999999999999998  999998641 110  1112111112333332 223445678999999999754


Q ss_pred             CCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC----------CCCCchHHHHHHHHHhCCCCCCcEEEEee
Q 025206          108 RKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN----------PVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (256)
Q Consensus       108 ~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN----------Pvd~~~~i~~~~~~~~~~~~~~kviG~t~  175 (256)
                      ..+  ..+..+.+..|+....++++.+++...  .+|.+|-          |.+--      .+....-+.|....|.+.
T Consensus        77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~------~~~~~~~~~p~~~Y~~sK  148 (312)
T d2b69a1          77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSED------YWGHVNPIGPRACYDEGK  148 (312)
T ss_dssp             SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTT------CCCBCCSSSTTHHHHHHH
T ss_pred             CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCcc------ccCCCCCCCCccHHHHHH
Confidence            311  234566788999999999999988864  4444431          11100      000000012333444444


Q ss_pred             chHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      +....+-...++..|++...++ ..|+|.|
T Consensus       149 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  178 (312)
T d2b69a1         149 RVAETMCYAYMKQEGVEVRVARIFNTFGPR  178 (312)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHhCCcEEEEEeeeEECCC
Confidence            4445555666777788888888 5699965

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4e-08  Score=79.68  Aligned_cols=106  Identities=13%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVI  101 (256)
                      |.++||+|+||+|++|++++..|+.+|+  +|++++++..+     +.... ...++.+.++    .++.++++++|+||
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi   72 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEE
Confidence            4678999999999999999999999998  99999886321     01000 1112222222    35667899999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +++|.........     .+....+.+++.+++.+-+ .+|.+|
T Consensus        73 ~~~g~~~~~~~~~-----~~~~~~~~l~~aa~~~~v~-r~i~~s  110 (205)
T d1hdoa_          73 VLLGTRNDLSPTT-----VMSEGARNIVAAMKAHGVD-KVVACT  110 (205)
T ss_dssp             ECCCCTTCCSCCC-----HHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             EEeccCCchhhhh-----hhHHHHHHHHHHHHhcCCC-eEEEEe
Confidence            9988643222222     2345667788888887744 344443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=8.6e-09  Score=89.75  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----CccccccC--CCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALE--DSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~--~aDvV  100 (256)
                      |||.|+||+||+|+.++..|+.+|+  +|+++|...  .......+.+.... .+..+.++    ..+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGK-HPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTS-CCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcCC-CCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999998  999999641  11221222221111 12222211    13445555  78999


Q ss_pred             EEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025206          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (256)
Q Consensus       101 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~  144 (256)
                      |++|+.+..+-  ++..+.++.|+...+++++.+++++...+|...
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S  123 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence            99997542111  245677899999999999999999866544433

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.70  E-value=1.7e-08  Score=86.62  Aligned_cols=114  Identities=19%  Similarity=0.241  Sum_probs=75.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCC--CEEEEe
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDS--DVVIIP  103 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~a--DvVIi~  103 (256)
                      ||.|+||+||||++++..|+++|+  +|+.+|.....+....+.......+++.+.++    .++.++++++  |+||++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999998  99999854211111111111111223333321    1344556554  999999


Q ss_pred             cCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+......  .+..+....|+...+.+++.+.+.+..-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87643221  2346677889999999999999988665665555

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.68  E-value=1.3e-08  Score=87.85  Aligned_cols=178  Identities=14%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC----ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~----~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvV  100 (256)
                      |||.|+||+|+||++++..|+++|+    ..+++.+|.....+....+........++.+.++    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999999875    4578888875321111122222222234433321    1233457899999


Q ss_pred             EEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCchHHHHHHHHHhCCCCCCcEEEE
Q 025206          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV  173 (256)
Q Consensus       101 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-----d~~~~i~~~~~~~~~~~~~~kviG~  173 (256)
                      +++|+.+...  .....+.+..|+.....+++.+.++...- +|..|...     +.. +     +.+.....|....|.
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~~~-~-----~~E~~~~~p~~~Y~~  153 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSIDSG-S-----WTESSPLEPNSPYAA  153 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCSSS-C-----BCTTSCCCCCSHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCCCC-C-----CCCCCCCCCCCHHHH
Confidence            9998765322  12345567889999999999999887653 44443211     000 0     001111223334444


Q ss_pred             eechHHHHHHHHHHHcCCCCCcee-EEEEeCCC-CCceeecc
Q 025206          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA-GITILPLF  213 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg-~~~~vp~~  213 (256)
                      +.+....+-..+++..+++...++ ..|+|.+. .+.++|.+
T Consensus       154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~  195 (322)
T d1r6da_         154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF  195 (322)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence            444444555666778899888888 66999542 23445544

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.67  E-value=1.8e-08  Score=81.60  Aligned_cols=73  Identities=15%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHh--cc--------cCCCcEEEEecCCccccc
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HI--------NTRSEVAGYMGNDQLGQA   93 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~--~~--------~~~~~v~~~~~t~d~~ea   93 (256)
                      +.+.|.||+|+|| |..|+++|..|...|+  +|.|+++++.  .+..+.  +.        ..+..+..   +++++++
T Consensus         3 ~~~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~--~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a   74 (189)
T d1n1ea2           3 ELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEE--EVRLVNEKRENVLFLKGVQLASNITF---TSDVEKA   74 (189)
T ss_dssp             CCCCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHH--HHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHH
T ss_pred             ccceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHH--HHHHHhhccccccccccccccccccc---chhhhhc
Confidence            3456678999998 9999999999999988  9999998742  222222  11        12334553   5688899


Q ss_pred             cCCCCEEEEec
Q 025206           94 LEDSDVVIIPA  104 (256)
Q Consensus        94 l~~aDvVIi~a  104 (256)
                      +++||+||++.
T Consensus        75 ~~~ad~iiiav   85 (189)
T d1n1ea2          75 YNGAEIILFVI   85 (189)
T ss_dssp             HTTCSCEEECS
T ss_pred             cCCCCEEEEcC
Confidence            99999999984

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.65  E-value=1.6e-07  Score=73.62  Aligned_cols=90  Identities=19%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |||+|||+ |.+|+++|..|..+|+  +|+.+|+++.. ..+.+..   .   +...  .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~---~---~~~~--~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ---L---VDEA--GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT---S---CSEE--ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh---c---ccee--eee-cccccccccccccC--c
Confidence            79999998 9999999999999999  99999987321 1112111   0   1111  123 46899999999984  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                                    ...+.++++++..+- ++.+++..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          233556667777765 6666665543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.64  E-value=1.1e-07  Score=75.13  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcc--cCC-CcEE--EEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI--NTR-SEVA--GYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~--~~~-~~v~--~~~~t~d~~eal~~aDvVIi  102 (256)
                      +||+|||+ |.+|+.+|..|+.+|+  +|.+||+++.. ....+....  ..+ ....  ....++++.+++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999998 9999999999999999  99999997321 111111110  000 0000  00013467889999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                      +...+                ...+++++++++- ++.+|+...|.
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCC
Confidence            85321                2456778888776 67766555444

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.1e-08  Score=88.16  Aligned_cols=167  Identities=12%  Similarity=0.032  Sum_probs=97.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch---hHHHHHhcc--cCCCcEEEEecC----CccccccCCC--C
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMGN----DQLGQALEDS--D   98 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~---g~~~dl~~~--~~~~~v~~~~~t----~d~~eal~~a--D   98 (256)
                      ++.|+||+||||++++..|++.|+  +|+.+|.....   .....+.+.  ....+++.+.++    .++++.++++  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            445999999999999999999998  99999975210   111111111  111234433221    1233455544  9


Q ss_pred             EEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec------CCCCCchHHHHHHHHHhCCCCCC
Q 025206           99 VVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS------NPVNSTVPIAAEVFKKAGTYNEK  168 (256)
Q Consensus        99 vVIi~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~~~iiv~t------NPvd~~~~i~~~~~~~~~~~~~~  168 (256)
                      +|+++|+....  ...+....+..|+.....+++.+++++  +...+|.+|      +|-+.  +     ..+...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~--~-----~~E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI--P-----QKETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS--S-----BCTTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC--C-----cCCCCCCCCC
Confidence            99999986432  224556677889999999999999876  234566554      22221  0     0111112334


Q ss_pred             cEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (256)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg  205 (256)
                      ...|.+.+....+-...++..+++..-++ ..|+|...
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            44555555555555666777788777776 44888653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.58  E-value=8.5e-08  Score=76.72  Aligned_cols=97  Identities=22%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcc----cCC---CcEEEEecCCccccccCCCCEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTR---SEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~----~~~---~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      |||+|||+ |..|+++|..|+.+|+  +|.++.+.........+...    .+.   ...... .++|+.++++++|+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            79999998 9999999999999998  99999764222223333321    111   112222 3668888999999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++..                ...++++++++.++-++..+++++
T Consensus        77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccc----------------hhhhHHHHHhhccccccceecccc
Confidence            9852                123567777888777666665554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.8e-08  Score=82.24  Aligned_cols=116  Identities=19%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+.+||.|+||+|++|++++..|+++|.+.+|+++++++............  ..+..+....++.++++++|+||+++|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeeccccccccccccccccccccccc
Confidence            345689999999999999999999999777999998863210000001000  000001112356778999999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ... ......++...|.....++++.+.+..... ++.+|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-fi~~S  127 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKH-FNLLS  127 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccc-cccCC
Confidence            542 112345566778888899999888776554 44444

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=8.1e-08  Score=83.92  Aligned_cols=173  Identities=14%  Similarity=0.013  Sum_probs=100.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe--cCCccccccCCCCEEEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII  102 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~eal~~aDvVIi  102 (256)
                      +.+.|||.|+||+||||++++..|+++|+  +|+.+|..+......++...    ......  ...++.++++++|.||+
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~~~d~Vih   85 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCD----EFHLVDLRVMENCLKVTEGVDHVFN   85 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCS----EEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccC----cEEEeechhHHHHHHHhhcCCeEee
Confidence            34678999999999999999999999998  99999976321111111111    111100  01134456789999999


Q ss_pred             ecCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHH----H---HHHHhCCCCCCcEEE
Q 025206          103 PAGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA----E---VFKKAGTYNEKKLFG  172 (256)
Q Consensus       103 ~ag~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~----~---~~~~~~~~~~~kviG  172 (256)
                      +|+.....   ..........|......+++.+.+.+.. .+|..|.-...-. ...    +   .........|....|
T Consensus        86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~-~~~~~~~~~~~~~~e~~~~~p~~~Yg  163 (363)
T d2c5aa1          86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPE-FKQLETTNVSLKESDAWPAEPQDAFG  163 (363)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCG-GGSSSSSSCEECGGGGSSBCCSSHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccc-cccccccccccccccCCcCCCCCHHH
Confidence            98654321   2334556778899999999999888754 4444442111000 000    0   000000012233444


Q ss_pred             EeechHHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (256)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg  205 (256)
                      .+.+...++-....+..|++..-++ ..|+|.++
T Consensus       164 ~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~  197 (363)
T d2c5aa1         164 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG  197 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCC
Confidence            4444455555566677788777777 45888664

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.7e-08  Score=76.75  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      |||+|||+ |.+|+.++..|.+.|+  +|.++|++.....................  ..+..+++.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL--TANDPDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE--EESCHHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc--ccchhhhhcccceEEEeeccc-
Confidence            79999998 9999999999999999  99999987421110000111111011111  123356789999999986322 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 025206          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (256)
Q Consensus       109 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~  150 (256)
                                     -+.+.++.+..+- ++..|+.+.|=++.
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~  102 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGT  102 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccH
Confidence                           1345666666554 78888888897764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.44  E-value=1.3e-07  Score=83.26  Aligned_cols=183  Identities=14%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cccccC--CCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~--~aDvVIi  102 (256)
                      |||.|+||+||+|++++..|+..|+ ..|+++|.....+....+.+......++.+.++ .|   +.+.++  ++|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999999999887 236778864211111122222222345544322 12   223333  5899999


Q ss_pred             ecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCC--------cEEEEecCCCCCc-----hHH-----HHHHHHHh
Q 025206          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN--------AIVNMISNPVNST-----VPI-----AAEVFKKA  162 (256)
Q Consensus       103 ~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~--------~~iiv~tNPvd~~-----~~i-----~~~~~~~~  162 (256)
                      +|+.+..+.  .+..+.+..|+.....+.+.+.++...        ..+|.+|. ..+.     .+.     ........
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS-~~vyg~~~~~~~~~~~~~~~~~~e~  158 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE-GGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecc-ceeeCCCccCCccccccCCCCcccC
Confidence            987542110  133556788888888888888766422        24554432 0000     000     00000000


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCCCC-Cceeecc
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG-ITILPLF  213 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~-~~~vp~~  213 (256)
                      ....|....|.+.+...++-...++..+++...++ ..|+|.++. ++.+|.+
T Consensus       159 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~  211 (361)
T d1kewa_         159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV  211 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHH
Confidence            00223344555555666666667788898888888 568997643 2344543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=2.5e-07  Score=81.66  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=74.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---------------chhH---HHHHhcccCCCcEEEEecC---
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---------------TPGV---AADVGHINTRSEVAGYMGN---   87 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---------------~~g~---~~dl~~~~~~~~v~~~~~t---   87 (256)
                      |||.|+||+||+|++++..|+++|+  +|+.+|...               ....   ...+... ...++..+.++   
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            7999999999999999999999998  999999420               0000   0001100 01123333221   


Q ss_pred             -CccccccC--CCCEEEEecCCCCCCC--CC---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           88 -DQLGQALE--DSDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        88 -~d~~eal~--~aDvVIi~ag~~~~~g--~~---r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ..+.++++  +.|+|+++|+....+.  .+   ..+....|+.....+.+.+.+++.+..++..|.
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss  145 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  145 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence             12334455  3599999997543111  12   335678899999999999999998877776663

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=4e-07  Score=78.62  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-C---ccc-cccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLG-QALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~-eal~~aDvVIi~  103 (256)
                      |||.|+||+||||++++..|+.+|+. +|+.+|..... . .++..   ..+++...++ +   ++. .+.+++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999999888842 89999986321 0 01111   1123333321 1   222 367789999999


Q ss_pred             cCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (256)
Q Consensus       104 ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~  138 (256)
                      |+....+.  ......+..|+.....+++.+.+....
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~  111 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR  111 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCE
T ss_pred             cccccccccccCCcccccccccccccccccccccccc
Confidence            98653222  223456788999999999999888654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.36  E-value=3.2e-06  Score=73.16  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=73.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCc-EEEEe----cCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSE-VAGYM----GNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~-v~~~~----~t~d~~eal~~aDvVIi  102 (256)
                      .+|.|+||+|+||++++..|+++|+  +|+....+... .....+.+.....+ .....    ....+.++++++|.|++
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            5999999999999999999999998  88876655211 11111111111111 11111    12345578999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .++... ...+.......|+....++++.+.++.--..++.+|
T Consensus        90 ~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          90 IASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             CCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            987543 334556667779999999999998875223444444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.36  E-value=2.1e-07  Score=80.82  Aligned_cols=177  Identities=16%  Similarity=0.107  Sum_probs=97.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC----CccccccCCCCEEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aDvVIi  102 (256)
                      ++|||.|+||+||||++++..|+.+|+--.++.+|...-.+....+.. ....++..+.++    ..+.++++++|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGG-GCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHH-hhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            378999999999999999999999887224666664311111011111 111234333321    234567789999999


Q ss_pred             ecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-----CchHHH----HHHHHHhCCCCCCcEE
Q 025206          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-----STVPIA----AEVFKKAGTYNEKKLF  171 (256)
Q Consensus       103 ~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd-----~~~~i~----~~~~~~~~~~~~~kvi  171 (256)
                      .|+......  .+..+.+..|+.....+++.+.+.+..-+++..+..-+     ...+..    ...........|....
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            987653221  23456778899999999999988875322221111000     000000    0000000012223344


Q ss_pred             EEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      |.+.+...++-....+..+++..-++ ..|+|.+
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~  193 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  193 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCC
Confidence            55545555555566677787777777 4588854

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=4.5e-07  Score=78.43  Aligned_cols=170  Identities=14%  Similarity=0.019  Sum_probs=102.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hh---HHHHHhcccCCCcEEEEecC-C---ccccccCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG---VAADVGHINTRSEVAGYMGN-D---QLGQALEDS   97 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g---~~~dl~~~~~~~~v~~~~~t-~---d~~eal~~a   97 (256)
                      ++++|.|+||+|++|++++..|.+.|+  +|..+|....  ..   ....+........++...++ .   .......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            566899999999999999999999999  9999996421  11   11111110001123333211 1   122456788


Q ss_pred             CEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCchHHHHHHHHHhCCCCCCcE
Q 025206           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus        98 DvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv-----d~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      |.|++++.....+  ..+....+..|+.....+.+.+.+.....++...|..+     +.  ++     .+..-..|...
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~--~~-----~E~~~~~p~~~  165 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL--PK-----VEDTIGKPLSP  165 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS--SB-----CTTCCCCCCSH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCC--Cc-----cCCCCCCCCCc
Confidence            9999887543211  23456678889999999999999887655554444211     00  00     00111223344


Q ss_pred             EEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206          171 FGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (256)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg  205 (256)
                      .|.+.+...++-..+++..+++..-++ ..|+|.++
T Consensus       166 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~  201 (341)
T d1sb8a_         166 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  201 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence            455555556666677788888888888 45888763

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.31  E-value=6.7e-07  Score=69.87  Aligned_cols=65  Identities=23%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |||+|||. |.+|+++|..|+..|+  +|..+|+++.  ...++....    ...   ..+..+++++||+||++..
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~----~~~---~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG----AET---ASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh----hhh---cccHHHHHhCCCeEEEEcC
Confidence            79999998 9999999999999999  9999998742  222333222    111   2355788999999999853

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.31  E-value=4e-07  Score=73.25  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-----------hHHHHHhcccCCCcEEEEecCCccccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-----------GVAADVGHINTRSEVAGYMGNDQLGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-----------g~~~dl~~~~~~~~v~~~~~t~d~~eal~   95 (256)
                      |||+|||. |+||.++|..++ +|+  +|+.||+++.  .           ....++.... ......   +++...+..
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~-~~~~~~---~~~~~~~~~   72 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK-QLSIKA---TLDSKAAYK   72 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEE---ESCHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhhh-hhhhhc---cchhhhhhh
Confidence            79999998 999999997665 688  9999999831  0           0011111111 112222   234456788


Q ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC-CCC
Q 025206           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-PVN  149 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN-Pvd  149 (256)
                      ++|+|+++.++|.....+..+     ...+....+.+....+..++++-|- |..
T Consensus        73 ~~~ii~v~vpt~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~iii~Stv~pg  122 (196)
T d1dlja2          73 EAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIG  122 (196)
T ss_dssp             HCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTT
T ss_pred             ccccccccCCccccccCCCcc-----eeEEeehhhhhhhcccceeEEeeeecCce
Confidence            999999998776432221111     2344556666666677666655442 444

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=8.6e-07  Score=76.86  Aligned_cols=113  Identities=20%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---ccccccC--CCCEEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVVI  101 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~--~aDvVI  101 (256)
                      .|.|+||+||+|++++..|+.+|+  +|+.+|...  ............ ...++.+.++ .   ++.++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            488999999999999999999998  999998642  111111111110 1122222211 1   2333333  789999


Q ss_pred             EecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ++|+.....  .+........|......+.+.+++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865311  13445667789999999999999888665554444

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.29  E-value=1.3e-05  Score=62.36  Aligned_cols=96  Identities=16%  Similarity=0.203  Sum_probs=61.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |+||+|||+ |.+|.++|..|...++..+|+.+|.++. ...+.+...      +.... +........++|+||++.. 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~------~~~~~-~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------IDEGT-TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------CSEEE-SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc------chhhh-hhhhhhhccccccccccCC-
Confidence            347999998 9999999999999987668999998742 222222211      11111 2222234568999999842 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNP  147 (256)
                                     ...+.++.+.+..+. ++.+++-+++.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           223455666666665 67777666643

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.22  E-value=3.6e-06  Score=73.78  Aligned_cols=114  Identities=18%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCC----------Cc-hhHHHHHhccc------CCCcEEEEecC-C
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIA----------NT-PGVAADVGHIN------TRSEVAGYMGN-D   88 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~----------~~-~g~~~dl~~~~------~~~~v~~~~~t-~   88 (256)
                      .|||.|+||+||+|++++..|++ .++  +|+++|.-          .. ......+.+..      ....+....++ .
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            47999999999999999998875 677  99999952          01 11222222211      11223333221 1


Q ss_pred             c---ccc---ccCCCCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 025206           89 Q---LGQ---ALEDSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM  143 (256)
Q Consensus        89 d---~~e---al~~aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv  143 (256)
                      |   +.+   ..+++|+|+++|+......  .........|......+.+...+.++..++..
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~  142 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFS  142 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccc
Confidence            1   222   2357899999997543211  23445677899999999999998887655443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.21  E-value=7.8e-07  Score=71.83  Aligned_cols=107  Identities=13%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc-cccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ-LGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d-~~eal~~aDvVIi~ag  105 (256)
                      ++||.|+||+|++|++++..|++++...+|.....++...    ..      ++...... .+ ......++|.||+++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----~~------~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----HP------RLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----CT------TEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----cc------cccccccchhhhhhccccchheeeeeee
Confidence            5799999999999999999999999755666654432110    00      11100000 01 1223456899999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..........++...|......+++..++..... ++.+|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-~i~~S  110 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARH-YLVVS  110 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             eeccccccccccccchhhhhhhcccccccccccc-ccccc
Confidence            6543334456677788888889999888766554 44444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=9.2e-07  Score=75.29  Aligned_cols=158  Identities=12%  Similarity=0.077  Sum_probs=92.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccc--cCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA--LEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ea--l~~aDvVIi~ag  105 (256)
                      ++||.|+||+|++|++++..|+++|+  ++++.|..+.    .|+.+..            .+.+.  ..+.|+|+++|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcch
Confidence            35999999999999999999999998  7777765421    1111100            01111  135788999875


Q ss_pred             CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchH----HHHHHH-HHhCCCCCCcEEEEeech
Q 025206          106 VPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP----IAAEVF-KKAGTYNEKKLFGVTTLD  177 (256)
Q Consensus       106 ~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~----i~~~~~-~~~~~~~~~kviG~t~ld  177 (256)
                      .....   .....+.+..|+.....+++.+.+++..-+ |.+|- ..+...    -++|-. ......+++...|.+.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~-i~~SS-~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~  141 (315)
T d1e6ua_          64 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL-LFLGS-SCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  141 (315)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEE-EEECC-GGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEE-EEECC-ceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHH
Confidence            43211   123556678899999999999998875434 43431 111000    000000 000001112234455455


Q ss_pred             HHHHHHHHHHHcCCCCCcee-EEEEeCCC
Q 025206          178 VVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (256)
Q Consensus       178 s~R~~~~la~~l~v~~~~v~-~~v~G~Hg  205 (256)
                      ..++.....+..|++..-++ ..|+|.++
T Consensus       142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~  170 (315)
T d1e6ua_         142 GIKLCESYNRQYGRDYRSVMPTNLYGPHD  170 (315)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            55666666777788888888 67999774

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.19  E-value=2.1e-06  Score=73.08  Aligned_cols=166  Identities=14%  Similarity=0.061  Sum_probs=94.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccccc--CCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--EDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~~aDvVIi  102 (256)
                      +||.|+||+||||++++..|+.+|+  +|+.+|..........+.+.....+++.+.++ .|   +.+.+  ...+++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999999999998  99999986321111112222212234433221 11   11111  24667777


Q ss_pred             ecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------CCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus       103 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN------Pvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      +++.....  ..+..+.+..|+.....+++.+.++.+..+++..|-      +.+.       ...+...+.+....|.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~-------~~~E~~~~~p~~~Y~~s  151 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAE-------RQDENTPFYPRSPYGVA  151 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSS-------SBCTTSCCCCCSHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCC-------CCCCCCCccccChhHHH
Confidence            76543211  134566788899999999999999997777666542      1110       00011101122233334


Q ss_pred             echHHHHHHHHHHHcCCCCCcee-EEEEeC
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGG  203 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~  203 (256)
                      .+...++.....+..+++...++ ..+.|.
T Consensus       152 K~~~E~~~~~~~~~~~~~~~~lr~~~vyGp  181 (321)
T d1rpna_         152 KLYGHWITVNYRESFGLHASSGILFNHESP  181 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEecccCC
Confidence            34444555555667777766665 347774

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=4.5e-06  Score=65.09  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=49.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |+||++||. |.+|+++|..|+.+|+  +|..||+++..  ..++.....   ..    ..++.++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~--~~~~~~~~~---~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAGA---SA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTTC---EE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhh--hhhhhhhhc---cc----cchhhhhccccCeeeecc
Confidence            469999998 9999999999999999  99999987422  233333221   11    235578999999999985

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.07  E-value=7.7e-06  Score=63.14  Aligned_cols=65  Identities=14%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||++||+ |.+|++++..|...++  ++.++|.+...  ..++.... .  +..   ..+..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~--~~~l~~~~-g--~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHh--HHhhcccc-c--eee---echhhhhhhccceeeeec
Confidence            79999998 9999999999998887  99999986321  22232110 0  111   235567889999999986

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=5.3e-06  Score=64.00  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCC-C-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~-~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |.||+|+||+|+||+-+...|++++ + ..+++++...+..+.........  ..+.  . ..+ .++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~--~-~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQ--D-AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCE--E-TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeee--c-ccc-hhhhhcCcEEEEecC
Confidence            3599999999999999997666554 2 45888887654322211111111  1111  1 112 246889999999963


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                                      ....+++++.+.+.+.++++  +.|-.+
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                            34567778887777666555  565554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.05  E-value=3.9e-06  Score=72.31  Aligned_cols=113  Identities=18%  Similarity=0.170  Sum_probs=72.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---cccccC--CCCE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDV   99 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal~--~aDv   99 (256)
                      .+||.|+||+|+||++++..|+.+|+  +|+.+|.+..  ........   ....++...++ .|   +.++++  ..|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhh---cccCCeEEEeeccChHhhhhhhhhchhhh
Confidence            36999999999999999999999998  9999998732  22211111   11123322221 11   233444  4589


Q ss_pred             EEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          100 VIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       100 VIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |+++|+.+....  .........|+.....+++.+.+......++..|
T Consensus        83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            999887542211  2234566778999999999999988666555444

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=9.6e-06  Score=64.80  Aligned_cols=168  Identities=15%  Similarity=0.057  Sum_probs=89.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++++|.|+||+|++|++++..|+++|+  ++.++|..+......++.... . .+... ....++.++++++|.||++++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~--~v~v~~~~R~~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD--KFVAKGLVRSAQGKEKIGGEA-D-VFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT--TCEEEEEESCHHHHHHTTCCT-T-EEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--cEEEEEEcCCHHHHHhccCCc-E-EEEeeeccccccccccccceeeEEEEe
Confidence            467999999999999999999999997  544544332222222222110 0 01100 011244567899999999987


Q ss_pred             CCCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206          106 VPRKPG---------------MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus       106 ~~~~~g---------------~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      ......               .........|....+.++...............+...+..  -          .|. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~----------~~~-~~  144 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--D----------HPL-NK  144 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--T----------CGG-GG
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC--C----------ccc-cc
Confidence            532100               1122334556667777887777776544333222111100  0          000 00


Q ss_pred             EEE-eechHHHHHHHHHHHcCCCCCcee-EEEEeCCCCCceeecc
Q 025206          171 FGV-TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLF  213 (256)
Q Consensus       171 iG~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~~~~vp~~  213 (256)
                      ... .......+...+.+..+++..-++ ..++|+++  ++++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~--~~~~~~  187 (252)
T d2q46a1         145 LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG--GVRELL  187 (252)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT--TSSCEE
T ss_pred             ccccchhhhhhhhhhhhhcccccceeecceEEECCCc--chhhhh
Confidence            001 112233445556677787766666 56888874  344444

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.01  E-value=2.7e-06  Score=70.62  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=60.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag  105 (256)
                      .|||.|+||+|++|++++..|..+|+  +|+.+|.++.     |+.+..            ++++.++  +.|+||++|+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~~------------~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNVL------------AVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCHH------------HHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCHH------------HHHHHHHHcCCCEEEeecc
Confidence            38999999999999999999999998  9999987642     222210            1123333  6799999987


Q ss_pred             CCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 025206          106 VPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (256)
Q Consensus       106 ~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p  137 (256)
                      ......  .........|......+.+.......
T Consensus        62 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          62 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccccccccccccccccc
Confidence            542111  12344455666666666666665543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.00  E-value=1e-06  Score=73.59  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVIi~ag~  106 (256)
                      |||.|+||+|+||++++..|..+|   +++.+|..... ...|+.+.            ..+++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999998877   45566665311 00122211            12233444  45999999985


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...  ...........|......+.+.+.+.+.  .++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhcccc--cccccc
Confidence            421  1234555677888888888888876653  444443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.2e-06  Score=70.61  Aligned_cols=110  Identities=20%  Similarity=0.099  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--------chhHHHHHhcccCCCcEEEEecC-C---ccccccCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGN-D---QLGQALED   96 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--------~~g~~~dl~~~~~~~~v~~~~~t-~---d~~eal~~   96 (256)
                      .||.|+||+||||++++..|+.+|+  +|+.+|...        .......+.... ..+++.+.++ .   .+.+++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            3899999999999999999999998  999998531        111111111111 1123333221 1   23344444


Q ss_pred             --CCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 025206           97 --SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (256)
Q Consensus        97 --aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~i  141 (256)
                        .|+|+++|+.+...  ..+..+.+..|+.....+.+.+.+++...++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence              44677788754211  1235566888999999999999988865433

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.4e-06  Score=72.49  Aligned_cols=167  Identities=11%  Similarity=0.039  Sum_probs=94.0

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhc---ccCCCcEEEEecC-Cc---ccccc--C
Q 025206           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH---INTRSEVAGYMGN-DQ---LGQAL--E   95 (256)
Q Consensus        29 ~KI-~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~---~~~~~~v~~~~~t-~d---~~eal--~   95 (256)
                      +|| .|+||+||||++++..|+.+|+  +|+.+|+...   .+....+..   ......++.+.++ .|   +.+++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 6999999999999999999999  9999998621   111011111   1111234443321 11   22233  3


Q ss_pred             CCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC-C-cEEEEec------CCCCCchHHHHHHHHHhCCC
Q 025206           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP-N-AIVNMIS------NPVNSTVPIAAEVFKKAGTY  165 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p-~-~~iiv~t------NPvd~~~~i~~~~~~~~~~~  165 (256)
                      +.++|+++++.....  .....+.+..|+.....+.+.+.+++. + ..+|.+|      +|-+.  +     +.+...+
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~--~-----~~E~~~~  151 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEI--P-----QKETTPF  151 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSS--S-----BCTTSCC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCC--C-----CCCCCCC
Confidence            567888877654211  123455677898899999999988763 2 4566554      11110  0     0011113


Q ss_pred             CCCcEEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCC
Q 025206          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (256)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~H  204 (256)
                      .|....|.+.+...++-...++..+++..-++ ..++|..
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            33444555545455555555677777666666 4477854

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.92  E-value=8.2e-06  Score=62.97  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=70.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-C-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      |||+|+||+|++|+-+...|..+. + ..++.++...+..+...++..   . ...... ..+ .+.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~---~-~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGK---D-AGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSS---C-CCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCC---c-ceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999997766543 3 458887765543222111111   1 111111 122 356899999999953 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~l  176 (256)
                                     -...+++++.+.+.+.++++  +.|..|.         +    +.++-++++..+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf---------R----~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL---------R----MDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT---------T----TCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc---------c----ccCCceEEeCCc
Confidence                           24467788888888777655  6777773         1    567777777543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.87  E-value=3.9e-05  Score=60.31  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      .+|+|||. |.+|+++|..|+..|+  +|+.||+++.+  ..++..... ...........++.+.+.++|.++++....
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~   77 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG   77 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecCch
Confidence            47999998 9999999999999999  99999987532  233332211 111111111224557789999999985321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                                     +.+.++...+.... |..++|..|
T Consensus        78 ---------------~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          78 ---------------QAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             ---------------HHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             ---------------HHHHHHHHHHHhccccCcEEEecC
Confidence                           23444555555555 556666555

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.81  E-value=3.5e-05  Score=60.46  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .|||+|||. |.+|++++..|+.+|+  +|..||+++
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~   34 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTY   34 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            379999998 9999999999999999  999999874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=7e-05  Score=57.11  Aligned_cols=82  Identities=16%  Similarity=0.307  Sum_probs=56.8

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ....++||+|||+.|.+|.+++..|...|+  +|.++|++...                      ..++.++++|+++.+
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~   60 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVS   60 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEEC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccc
Confidence            334567999999449999999999999999  99999986421                      112356788999887


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ...                ..+.++.+.+..+. ++++++-.+
T Consensus        61 ~~~----------------~~~~~v~~~~~~~~~~~~iiiD~~   87 (152)
T d2pv7a2          61 VPI----------------NLTLETIERLKPYLTENMLLADLT   87 (152)
T ss_dssp             SCG----------------GGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             cch----------------hhheeeeecccccccCCceEEEec
Confidence            532                12334555555555 566766555

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.74  E-value=1.9e-05  Score=65.88  Aligned_cols=77  Identities=16%  Similarity=0.068  Sum_probs=50.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h-hHHHHHhcccCCCcEEEEec----CCccccccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~-g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDv   99 (256)
                      +++||.|+||+|++|++++..|+.+|+  +|+.++++..  . .....+.... ...++...+    ...+.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            456899999999999999999999998  9999887631  1 1111111111 111222221    1234567899999


Q ss_pred             EEEecCC
Q 025206          100 VIIPAGV  106 (256)
Q Consensus       100 VIi~ag~  106 (256)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.74  E-value=1.4e-05  Score=61.40  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||+|||. |.+|+.++..|.++|+  +|..+|..+...... ..... .  +.     .+..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~-~--~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV-G--VT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH-T--CE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc-c--cc-----ccHHHHHhhcCeEEEEe
Confidence            79999998 9999999999999999  999998764322111 11111 1  11     12357899999999985

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.5e-05  Score=61.59  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=66.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe---cCCccccccCCCCEEEEecCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM---GNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~---~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |.|+||+||+|++++..|+++|. .+|+.+|..........+.+.... ......   ........+.++++|+++|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNIA-DYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCCS-EEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccchh-hhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999984 379999843211111112211100 000000   0001123567899999998766


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~  138 (256)
                      .............|......+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555556666677788888888888877754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.71  E-value=5e-05  Score=60.45  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEE-ecCCccccccCCCCEEEE
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVII  102 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~eal~~aDvVIi  102 (256)
                      .+.++|.|+||+|.+|..++..|++.|.  +|+++|++.  +......+............ ....++++.+.++|++|.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            3556999999999999999999999998  999999983  22222223221111111111 112356678899999999


Q ss_pred             ecCCC
Q 025206          103 PAGVP  107 (256)
Q Consensus       103 ~ag~~  107 (256)
                      ++|.+
T Consensus        99 ~Ag~g  103 (191)
T d1luaa1          99 AGAIG  103 (191)
T ss_dssp             CCCTT
T ss_pred             cCccc
Confidence            98864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=6.8e-05  Score=55.85  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEe-cCCccccc-cCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQA-LEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~ea-l~~aDvVIi~ag  105 (256)
                      +++.|+|+ |.+|+.++..|...|+  +|+++|.++.  .+.++.+.... -+.+.. ....+.++ +.+||.||++.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~~~-~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYATH-AVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTCSE-EEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhCCc-ceeeecccchhhhccCCccccEEEEEcC
Confidence            36899998 9999999999999999  9999999842  12233332211 011000 01122233 789999888753

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=3.9e-05  Score=65.30  Aligned_cols=173  Identities=9%  Similarity=-0.012  Sum_probs=89.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-------chhHHHHHhcccCCCcEEEEecC-Cc---ccccc--C
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--E   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-------~~g~~~dl~~~~~~~~v~~~~~t-~d---~~eal--~   95 (256)
                      +|+.|+||+|++|++++..|+++|+  +|+.+|...       ......+..... ...++...++ .+   +.+.+  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHhhh
Confidence            4788999999999999999999999  999999742       111111111111 1123333221 11   22222  3


Q ss_pred             CCCEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCc
Q 025206           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~----p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~k  169 (256)
                      +.|+||++|+......  .+..+....|......+.+.+.+.+    ....++..+. +..-..- .....+..-+.|..
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss-~~~~~~~-~~~~~E~~~~~p~~  156 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS-SEMFGST-PPPQSETTPFHPRS  156 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE-GGGGTTS-CSSBCTTSCCCCCS
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeeccc-ceecccC-CCCCCCCCCCCCcc
Confidence            6799999997643211  2344556677666666666665432    2333433321 1000000 00000010022333


Q ss_pred             EEEEeechHHHHHHHHHHHcCCCCCcee-EEEEeCCCC
Q 025206          170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG  206 (256)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~Hg~  206 (256)
                      ..|.+.+.+..+-....+..+++..-++ ..|+|.+++
T Consensus       157 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         157 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            4444444455555555677787766676 348887643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.64  E-value=0.0002  Score=53.26  Aligned_cols=106  Identities=22%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---ccc-ccCCCCEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-ALEDSDVVIIP  103 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~e-al~~aDvVIi~  103 (256)
                      |||.|+|+ |.+|+.++..|...|+  +|+++|.++..  +..+.... .  ...+.+. ++   +.+ .++++|.++.+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~-~--~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-D--ALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-S--SEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhh-h--hhhccCcccchhhhhhcChhhhhhhccc
Confidence            79999998 9999999999999998  99999998421  12222111 1  1111111 11   222 36899999887


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhC
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~  163 (256)
                      ...         |  +.|+.+    +...++++++.++..+.||..      .+.++..|
T Consensus        73 t~~---------d--~~N~~~----~~~~k~~~~~~iI~~~~~~~~------~~~l~~~G  111 (132)
T d1lssa_          73 TGK---------E--EVNLMS----SLLAKSYGINKTIARISEIEY------KDVFERLG  111 (132)
T ss_dssp             CSC---------H--HHHHHH----HHHHHHTTCCCEEEECSSTTH------HHHHHHTT
T ss_pred             CCc---------H--HHHHHH----HHHHHHcCCceEEEEecCHHH------HHHHHHCC
Confidence            321         1  335422    223445677766666666654      24566655

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.62  E-value=0.00025  Score=60.69  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc----cccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~eal~~aDvVI  101 (256)
                      ++++|+|+||+|++|++++..|+++|+  +|+.+-++........+...   ..++...++ .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            456899999999999999999999998  88888665322222222221   123333322 12    345788999988


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +.....   ..       .|....+.++++..+.+-..+++..|
T Consensus        77 ~~~~~~---~~-------~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---AG-------DEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---TS-------CHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---cc-------hhhhhhhHHHHHHHHhCCCceEEEee
Confidence            864321   11       13344456777777776444555444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.59  E-value=4.7e-05  Score=58.33  Aligned_cols=64  Identities=19%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCC-CccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~-~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      |||++||+ |.+|++++..|...+ +  +|.++|+++..  ...+....   .++..   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~--~i~v~~r~~~~--~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCC--cEEEEeCChhH--HHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999998 999999999877666 5  99999987421  22233211   12221   232 4678999999985

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00056  Score=56.69  Aligned_cols=119  Identities=20%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      .+.+.|+||++.+|..+|..|+++|.  .|++.|++.  ++..+.++.......++..+..+ ++          ..+.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34688999999999999999999998  999999883  33444445543322233333211 11          22335


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~-p~~~iiv~tNPv  148 (256)
                      ...|++|..||......   .+.   ...+..|    +...+.+++.+.+.. ..+.||+++-..
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  152 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMS  152 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGG
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechH
Confidence            67899999998653211   121   2234444    445677777777666 467888776433

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.54  E-value=4.8e-05  Score=62.75  Aligned_cols=77  Identities=23%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHHHHhcccCCCcEEEEecC----CccccccCCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGN----DQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~dl~~~~~~~~v~~~~~t----~d~~eal~~aD   98 (256)
                      .++||.|+||+|++|++++..|+..|+  +|+.++++..    ......+.+... ..+....++    ..+.++++++|
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~   78 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVD   78 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhce
Confidence            356999999999999999999999998  9999998631    111111111110 112222111    12345678999


Q ss_pred             EEEEecCC
Q 025206           99 VVIIPAGV  106 (256)
Q Consensus        99 vVIi~ag~  106 (256)
                      .|+.+++.
T Consensus        79 ~vi~~~~~   86 (307)
T d1qyca_          79 VVISTVGS   86 (307)
T ss_dssp             EEEECCCG
T ss_pred             eeeecccc
Confidence            99888753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.46  E-value=0.00015  Score=56.66  Aligned_cols=102  Identities=23%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             hhhhhhhhhcccccccccCCCCCC---CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCC
Q 025206            3 SSVLRSVKTLAKPAGARGYSSESV---PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTR   78 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~   78 (256)
                      -+++-.-+.|.++.+-+.-+-...   ++-||.|+|+ |.+|..-+..++..|-  +|..+|.+.. .....+.....  
T Consensus         4 ~av~~ga~~L~~~~gG~G~Llgg~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~~--   78 (168)
T d1pjca1           4 LSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR--   78 (168)
T ss_dssp             HHHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG--
T ss_pred             HHHHHHHHHhhhhcCCcEEEecCCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhccc--
Confidence            355556667777777666444433   5789999998 9999998888887775  9999999832 11112121111  


Q ss_pred             CcEEEEecCCccccccCCCCEEEEecCCCCCC
Q 025206           79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (256)
Q Consensus        79 ~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~  110 (256)
                      .... ......+++.+++||+||-++-.|.+.
T Consensus        79 ~~~~-~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          79 VELL-YSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             SEEE-ECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             ceee-hhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            1111 222335678899999999998766443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.44  E-value=9.2e-05  Score=58.72  Aligned_cols=78  Identities=19%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHH-HHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +.++.||+|+||+|++|+-+...|..++.+ |+..+-..+..|.. .+.............  .....+.++++|+|+.+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeec
Confidence            457789999999999999999999988765 66666444322221 112111111011101  11123456899999998


Q ss_pred             cC
Q 025206          104 AG  105 (256)
Q Consensus       104 ag  105 (256)
                      ..
T Consensus        79 lp   80 (183)
T d2cvoa1          79 LP   80 (183)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00016  Score=59.73  Aligned_cols=118  Identities=15%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|+++  ++....++..... ...+.....-....+.+...|++|..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            345889999999999999999999998  999999974  2222222221110 00010000000122346789999999


Q ss_pred             cCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206          104 AGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       104 ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ||......   .+.   ...+..|+.    ..+.+++.+.+....+.|++++.
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS  136 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS  136 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccc
Confidence            98754321   122   223444543    55666666655555677777764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=4.9e-05  Score=60.20  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCC--CcEEEEecCCccccccCCCCEEEEecC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+||+|+||+|++|.-+...|..++.+ ||..+=.++..|...+-.+....  ..+.    ..+.++..+++|+|+.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            679999999999999999999988765 55555333322322211122111  1121    2243445568999999854

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=2.6e-05  Score=59.69  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|||+|+||+|++|+-+...|.++++ ..|+.++-..+..|+.....+    ..+...  ..+ .+.+.++|+++++++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~----~~~~~~--~~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE----SSLRVG--DVD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT----EEEECE--EGG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc----ccchhc--cch-hhhhccceEEEecCC
Confidence            368999999999999999999976543 448888765533232111111    112211  112 346789999999863

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00018  Score=59.29  Aligned_cols=117  Identities=14%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC-CCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .+++.|+||++.+|..++..|+..|.  +|++.|+++  +.....++..... ...+.....-....+.+...|++|..|
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence            45788999999999999999999998  999999873  2222222221110 000000000001123356899999999


Q ss_pred             CCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206          105 GVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       105 g~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      |......   .+.   ...+..|+    ...+.+.+.+.+....+.+|+++.
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS  134 (242)
T d1cyda_          83 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  134 (242)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence            8754221   222   22344453    344556666555555667777764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.34  E-value=9.5e-05  Score=57.09  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      |||+||||+|.+|+++|..|+..|+  +|+++++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999996669999999999999999  999999883

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.34  E-value=0.0009  Score=55.24  Aligned_cols=114  Identities=24%  Similarity=0.324  Sum_probs=71.4

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        29 ~KI-~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      +|| .|+||++.+|..+|..|+.+|.  .|++.|+++  ++....++.+...  ++..+..+ ++          ..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            376 6779999999999999999998  999999984  3333444543221  22222211 11          12335


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|..||......   .+.   ...+..|+    ...+..++.+.+....+.|++++.
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS  138 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  138 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccc
Confidence            68999999998753221   222   23445554    444566677777777777777763

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.31  E-value=7.5e-05  Score=57.50  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC---CccccccCCCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t---~d~~eal~~aDvVIi~a  104 (256)
                      +||.|+|| |.+|.++|..|..+|+  +|+++|++..  .+.++.+... .........   ....+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQ-HSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCT-TEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhccc-ccccccccccchhhhHhhhhccceeEeec
Confidence            58999998 9999999999999998  9999999842  2333433211 111111111   12345678889888764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.23  E-value=0.0026  Score=45.71  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.+||.|+|+ |.+|..-+..|+..|-  +|++++....... ..+.+..   .++......+ .+++.++++|+.+.
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            4459999998 9999999999999987  9999987643322 2222221   2333332333 46799999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.18  E-value=0.0017  Score=53.53  Aligned_cols=112  Identities=21%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal   94 (256)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|++.  ++....++..     +...+..+ ++   +       .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            35778999999999999999999998  999999983  3333344421     11111110 11   1       1234


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|..||......   .+.   ...+..|+    ...+.+++.+.+....+.||+++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS  139 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS  139 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence            57999999998653221   122   23455554    344566666666666677887764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00037  Score=56.90  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=66.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|+++.  ...+..+......++.  .-..+.+.+...|++|..||.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecccc
Confidence            345889999999999999999999998  9999998731  1111111100001100  001234567889999999997


Q ss_pred             CCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPG---MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g---~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +....   .+..   ..+..|+    ...+.+.+.+++.. .+.+|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          77 PKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            64321   2222   2234443    35566777776654 45555554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00013  Score=51.14  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +.+||+|+|. |..|.++|..|..+|.  +|.++|.+.......++.+   ...+.  .+..+ .+.+.+.|+||++-|.
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~--~~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERH--TGSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEE--ESBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---cccee--ecccc-hhhhccCCEEEECCCC
Confidence            3458999998 9999999999999998  9999998632111111221   11122  11222 3467899999999887


Q ss_pred             CC
Q 025206          107 PR  108 (256)
Q Consensus       107 ~~  108 (256)
                      |.
T Consensus        75 ~~   76 (93)
T d2jfga1          75 AL   76 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.11  E-value=0.0024  Score=52.44  Aligned_cols=115  Identities=14%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|++.  ++....++..   ..++..+..+ ++          ..+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345778889999999999999999998  999999873  2223333332   1123322211 11          1233


Q ss_pred             cCCCCEEEEecCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +-..|++|..||......   .+..   ..+..|+    ...+.+++.+.+....+.||+++.
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS  142 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeec
Confidence            457899999998753221   2222   2344553    455666777766665667777764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00064  Score=55.85  Aligned_cols=116  Identities=24%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec----CCccccccCCCCEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvV  100 (256)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|+++  ++....++.......++.....    -....+.+...|++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   81 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGV   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            345788999999999999999999998  999999973  2222121211000001100000    00112334579999


Q ss_pred             EEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 025206          101 IIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       101 Ii~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      |..||......   .+.   ...+..|+.    ..+.+.+.+.+.. .+.+++.+
T Consensus        82 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~s  135 (242)
T d1ulsa_          82 VHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTA  135 (242)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred             EECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeec
Confidence            99999754321   222   233455544    4455555554433 34455444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0024  Score=52.48  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++.+|..+|..|++.|.  .|++.|++.  +.....++.+.. ..++..+..+ ++          ..+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  999999883  233333443221 1122222111 11          1123


Q ss_pred             cCCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +...|++|..||......   .+.   ...+..|+    ...+.+++.+.+.. .+.+|+++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            457999999999753321   122   22344554    45566666665444 44555554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.10  E-value=0.00074  Score=53.34  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             hhhhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCC--
Q 025206            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRS--   79 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~--   79 (256)
                      .+|+..-..|.|+.+-.-=..-..+|-||.|||| |-+|..-+.....-|-  .|..+|++.. ......+.......  
T Consensus         4 ~av~~aa~~l~k~~~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~   80 (183)
T d1l7da1           4 RAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDD   80 (183)
T ss_dssp             HHHHHHHHHCSSCSSCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC--
T ss_pred             HHHHHHHHHhhhhcCCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEec
Confidence            3455555556555433222222336779999998 9999988888876665  9999999842 22223232111000  


Q ss_pred             ----cEE---EEe----------cCCccccccCCCCEEEEecCCCCC
Q 025206           80 ----EVA---GYM----------GNDQLGQALEDSDVVIIPAGVPRK  109 (256)
Q Consensus        80 ----~v~---~~~----------~t~d~~eal~~aDvVIi~ag~~~~  109 (256)
                          ..+   .+.          ....+.+.+++||+||.++-.|.+
T Consensus        81 ~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1          81 EAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             ---------------------CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             cccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCc
Confidence                000   000          011234568999999999876643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00068  Score=53.43  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=34.7

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.....+++||+|||| |..|...|..|+++|+  +|+|+|..
T Consensus        36 ~~~~~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~   75 (179)
T d1ps9a3          36 PILPAVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAH   75 (179)
T ss_dssp             CCCSCSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESS
T ss_pred             ccCCCCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEecc
Confidence            3344446789999998 9999999999999999  99999986

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0071  Score=50.89  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             ccCCCCC-CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhccc---CCCcEEEEecC-Cc--
Q 025206           19 RGYSSES-VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYMGN-DQ--   89 (256)
Q Consensus        19 ~~~~~~~-~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~---~~~~v~~~~~t-~d--   89 (256)
                      |+|+..- -+.+.+.|+||++-+|..++..|+..|.  .|++.|++.  ++..+.+|....   ...++..+..+ ++  
T Consensus         2 ~~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~   79 (297)
T d1yxma1           2 RSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE   79 (297)
T ss_dssp             CCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred             CCCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHH
Confidence            4555442 2455788999999999999999999998  999999983  344444554221   11233333211 11  


Q ss_pred             -c-------ccccCCCCEEEEecCCCCCCC---CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           90 -L-------GQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 -~-------~eal~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       +       .+.+...|++|..||......   .+   -...+..|+.    ..+.+++.+.+... +.+|+++.
T Consensus        80 ~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss  153 (297)
T d1yxma1          80 EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV  153 (297)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence             1       123457999999998653221   12   2234555643    44556666555543 44555553

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.08  E-value=0.0005  Score=53.94  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=43.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC---CCchhHHHHHhccc----CCCcEEEEecCCccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI---ANTPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~---~~~~g~~~dl~~~~----~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |+||+|+||+|++|.-+...|..++.+ ||.-+-.   ....|....-.+..    ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            689999999999999999999998754 5543321   11122211111111    11122221   2333456899999


Q ss_pred             EEecC
Q 025206          101 IIPAG  105 (256)
Q Consensus       101 Ii~ag  105 (256)
                      +.+.+
T Consensus        77 f~alp   81 (179)
T d2g17a1          77 FLATA   81 (179)
T ss_dssp             EECSC
T ss_pred             ecccc
Confidence            99853

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.04  E-value=0.0037  Score=51.58  Aligned_cols=116  Identities=19%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal   94 (256)
                      .+.+.|+||++-+|..++..|++.|.  +|++.|++.  ++....++.......++..+..+ ++   +       .+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34678899999999999999999998  999999983  22233333322222223222211 11   1       1234


Q ss_pred             CCCCEEEEecCCCCCCC----CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG----MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g----~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|..||.....+    .+..   ..+..|+    ...+.+.+.+++.. .+.||+++.
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS  143 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  143 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCccccc
Confidence            67999999998642222    2222   2344553    34555666666554 456666653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.02  E-value=0.0012  Score=52.06  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=60.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|||. |.+|..++..+..-|.  +|..+|....++        ..  ..     ..++++.+++||+|+++..
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~~--~~-----~~~l~ell~~sDiv~~~~p  101 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW--RF-----TNSLEEALREARAAVCALP  101 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS--CC-----BSCSHHHHTTCSEEEECCC
T ss_pred             ccCceEEEecc-ccccccceeeeecccc--cccccccccccc--------ce--ee-----eechhhhhhccchhhcccc
Confidence            45579999998 9999999999987787  999999863211        00  00     1256789999999999753


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .  .+ +++ .++  |    +   +.+....|++++|+++-
T Consensus       102 l--~~-~t~-~li--~----~---~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         102 L--NK-HTR-GLV--K----Y---QHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             C--ST-TTT-TCB--C----H---HHHTTSCTTCEEEECSC
T ss_pred             c--cc-ccc-ccc--c----c---ceeeeccccceEEeccc
Confidence            2  22 111 111  1    1   23334468899999873

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0029  Score=51.99  Aligned_cols=115  Identities=20%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal   94 (256)
                      .+.+.|+||++-+|..+|..|+++|.  +|++.|++.  +.....++.......++..+..+ ++   +       .+.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            34678889999999999999999998  999999983  33333444332111123222211 11   1       1234


Q ss_pred             CCCCEEEEecCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHhC--CCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKYC--PNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~~r~d~~~~N~----~i~~~i~~~i~~~~--p~~~iiv~tN  146 (256)
                      -..|++|..||.....  +..+.+..|+    ...+..++.+.+..  ..+.||+++.
T Consensus        81 G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          81 GRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             SCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence            5799999999876432  3344455554    45566667766554  3467777764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.94  E-value=0.0003  Score=54.42  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      +..||.|||+ |.+|..++..|...|. .++.++.+...  .+.++.... ......   -.++.+++.++|+||.+.+.
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~--ka~~l~~~~-~~~~~~---~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYE--RAVELARDL-GGEAVR---FDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHH--HHHHHHHHH-TCEECC---GGGHHHHHHTCSEEEECCSS
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHH--HHHHHHHhh-hccccc---chhHHHHhccCCEEEEecCC
Confidence            4569999998 9999999999998875 57999987622  222222211 111111   13667789999999999765


Q ss_pred             C
Q 025206          107 P  107 (256)
Q Consensus       107 ~  107 (256)
                      +
T Consensus        95 ~   95 (159)
T d1gpja2          95 P   95 (159)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.007  Score=49.48  Aligned_cols=118  Identities=20%  Similarity=0.297  Sum_probs=73.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Ccc----------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQL----------GQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~----------~eal   94 (256)
                      .+.+.|+||++-+|..++..|+++|.  .|++.|+++  ++..+.++....  .++..+.++ +|.          .+.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            34677889999999999999999998  999999983  334444444321  122222211 121          1345


Q ss_pred             CCCCEEEEecCCCCCCCC--CH----HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 025206           95 EDSDVVIIPAGVPRKPGM--TR----DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~--~r----~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~  150 (256)
                      ...|++|.+||.......  ..    .+.+.-|    ...++.+.+.+.+.. .+.||+++.....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhc
Confidence            679999999987543221  11    2233444    455667777776654 5677777765443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.92  E-value=0.0035  Score=51.68  Aligned_cols=157  Identities=16%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  ++....++....  .++..+..+ ++          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  999999983  333334444322  122222211 11          1233


Q ss_pred             cCCCCEEEEecCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHh
Q 025206           94 LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~  162 (256)
                      +...|++|..||.....+    .+.   ...+..|+.    ..+.+.+.+.+. ..+.||+++....           ..
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~  147 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------VK  147 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HS
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------cc
Confidence            468999999998643222    222   223445543    456666666554 4567777763211           11


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                      + .|..-.++.+.--...|-+.+|..++  +..|++-.+-
T Consensus       148 ~-~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         148 G-PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             C-CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             C-CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence            1 22111222221123456677888875  5566654443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.91  E-value=0.0058  Score=50.45  Aligned_cols=123  Identities=20%  Similarity=0.169  Sum_probs=73.3

Q ss_pred             cCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc---hhHHHHHhcccCCCcEEEEec-CCc------
Q 025206           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ------   89 (256)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d------   89 (256)
                      ++.+.+.+.+++.|+||++-+|..++..|+..|.  +|++.|.+..   +.....+.....  ++..+.. ..+      
T Consensus        10 ~~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~   85 (272)
T d1g0oa_          10 GPQSASLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVR   85 (272)
T ss_dssp             SGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHH
T ss_pred             CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHH
Confidence            3444555667899999999999999999999998  9999998732   222233332221  1222211 111      


Q ss_pred             ----cccccCCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           90 ----LGQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        90 ----~~eal~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                          ..+.+...|++|..+|......   .+   ..+.+..|+.-...+.+.+.++- ..+.+++++.
T Consensus        86 ~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          86 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence                2234567899999998654321   12   23345566655555555555554 4455555543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.0045  Score=43.46  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=54.2

Q ss_pred             CCCCCCCceEEEEcCCCCcHH-HHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           22 SSESVPDRKVAVLGAAGGIGQ-PLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~-~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ++.+.+.+||-+||- |-+|. ++|..|.++|+  +|...|.... .....|.+..    +.++.+. + .+.++++|+|
T Consensus         2 ~~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G----i~v~~g~-~-~~~i~~~d~v   71 (96)
T d1p3da1           2 IPEMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG----AKIYIGH-A-EEHIEGASVV   71 (96)
T ss_dssp             CCCCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT----CEEEESC-C-GGGGTTCSEE
T ss_pred             CccchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC----CeEEECC-c-cccCCCCCEE
Confidence            355667789999998 88885 67999999999  9999998632 2223444432    2333322 2 3567999999


Q ss_pred             EEecCCCC
Q 025206          101 IIPAGVPR  108 (256)
Q Consensus       101 Ii~ag~~~  108 (256)
                      |.+.+.|.
T Consensus        72 V~S~AI~~   79 (96)
T d1p3da1          72 VVSSAIKD   79 (96)
T ss_dssp             EECTTSCT
T ss_pred             EECCCcCC
Confidence            99987763

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.86  E-value=0.0083  Score=48.97  Aligned_cols=115  Identities=18%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---c-------ccccC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQALE   95 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~eal~   95 (256)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++.+.....++...  .++..+..+ ++   +       .+.+-
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            345678899999999999999999998  999999875332222222221  122222211 11   1       12345


Q ss_pred             CCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..|++|..||......   .+.   ...+..|    ....+.+++.+.+.. .+.||+++.
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS  139 (247)
T d2ew8a1          80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  139 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCcccccc
Confidence            7999999998753221   122   2234445    345566777777665 466667763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.85  E-value=0.011  Score=48.73  Aligned_cols=114  Identities=18%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~ea   93 (256)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|++.  ++....++....   .+..+..+ ++   +       .+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            445788999999999999999999998  999999984  333334443321   22222211 11   1       123


Q ss_pred             cCCCCEEEEecCCCCC-C----CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRK-P----GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~-~----g~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|..||.... +    ..+.   ...+..|+    ...+.+++.+.+.. .+.+|+++.
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss  143 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTAS  143 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccc
Confidence            4578999999986432 1    1222   22344453    45566666666554 455555653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.85  E-value=0.0048  Score=50.95  Aligned_cols=115  Identities=15%  Similarity=0.236  Sum_probs=70.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-C---cc-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-D---QL-------GQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~---d~-------~ea   93 (256)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|++.   ++....++....  .++..+..+ +   ++       .+.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            34778889999999999999999998  999999873   223333343321  122222111 1   11       122


Q ss_pred             cCCCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|..||......   .+.   ...+..|    ....+.+++.+.+....+.|+++|.
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS  145 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence            457899999998754221   222   2234555    4456777788877766666776654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.84  E-value=0.0061  Score=50.06  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      .+.+.|+||++.+|..++..|++.|.  +|++.|++.  +.....++.... ..++..+..+ ++          ..+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35778999999999999999999998  999999984  222333332211 1112222211 11          12335


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|..||......   .+.   ...+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            67999999998653221   222   22345554    455667777766666666666543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.82  E-value=0.0076  Score=49.95  Aligned_cols=115  Identities=15%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecC-Cc---c-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGN-DQ---L-------GQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t-~d---~-------~ea   93 (256)
                      .+.+.|+||++.+|..+|..|++.|.  .|++.|+++  ++....++...... .++..+..+ ++   +       .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999998  999999983  33444445433221 123333211 11   1       122


Q ss_pred             cCCCCEEEEecCCCCCCC-----CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKPG-----MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-----~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +...|++|..||.....+     ++..   ..+..|+    ...+.+.+.+.+. +.+.+++.|
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence            347899999998643222     1222   2334453    3556666666544 456666654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.00039  Score=52.69  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=48.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCCCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~~~~  110 (256)
                      |++||+ |.+|++++..|...+.  .+.+++++.  ....++.+.... .      ..+..++++.+|+||++...    
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~~-~------~~~~~~~~~~~DiVil~v~d----   65 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYGG-K------AATLEKHPELNGVVFVIVPD----   65 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTCC-C------CCSSCCCCC---CEEECSCT----
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhcccc-c------ccchhhhhccCcEEEEeccc----
Confidence            689998 9999999987765443  334677653  223334432211 0      11345789999999998521    


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          111 GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       111 g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      .            .+.++++++.  .++.+++-.+++..
T Consensus        66 ~------------~i~~v~~~l~--~~~~ivi~~s~~~~   90 (153)
T d2i76a2          66 R------------YIKTVANHLN--LGDAVLVHCSGFLS   90 (153)
T ss_dssp             T------------THHHHHTTTC--CSSCCEEECCSSSC
T ss_pred             h------------hhhHHHhhhc--ccceeeeecccchh
Confidence            1            1234455443  25667777776544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.78  E-value=0.0015  Score=51.92  Aligned_cols=99  Identities=21%  Similarity=0.321  Sum_probs=64.2

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      .....++|+|||. |.||+.++..+..-|.  +|..+|............       +..   ..++++.++.||+|+++
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~  111 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLH  111 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEEC
T ss_pred             eeeeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEe
Confidence            3445679999998 9999999999987787  999999864322212111       111   23677889999999998


Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          104 AGVP-RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       104 ag~~-~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      .... ...+.     +  |.+       .+....|++++|+++=  =+|
T Consensus       112 ~plt~~T~~l-----i--~~~-------~l~~mk~~a~lIN~sRG~ivd  146 (193)
T d1mx3a1         112 CGLNEHNHHL-----I--NDF-------TVKQMRQGAFLVNTARGGLVD  146 (193)
T ss_dssp             CCCCTTCTTS-----B--SHH-------HHTTSCTTEEEEECSCTTSBC
T ss_pred             ecccccchhh-----h--hHH-------HHhccCCCCeEEecCCceEEc
Confidence            6432 11121     1  111       1333457899999973  355

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.01  Score=48.84  Aligned_cols=122  Identities=16%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             cCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C--------
Q 025206           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D--------   88 (256)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~--------   88 (256)
                      .|-+++.+.+++.|+||++.+|..+|..|+.+|.  +|++.|++.  ++....++.... ......+... .        
T Consensus         6 ~f~~~~L~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~   82 (269)
T d1xu9a_           6 EFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQF   82 (269)
T ss_dssp             CCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHH
T ss_pred             cCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHH
Confidence            3545555667899999999999999999999998  999999983  333333332211 1112211111 0        


Q ss_pred             --ccccccCCCCEEEEecCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           89 --QLGQALEDSDVVIIPAGVPRKPG---MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        89 --d~~eal~~aDvVIi~ag~~~~~g---~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                        ...+.....|+++..||......   .+..   ..+..|    ....+.+.+.+++.  ++.+++++.
T Consensus        83 ~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS  150 (269)
T d1xu9a_          83 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS  150 (269)
T ss_dssp             HHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred             HHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence              11123457899999887643211   1222   234444    34556666766543  456666653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.0031  Score=47.90  Aligned_cols=61  Identities=18%  Similarity=0.148  Sum_probs=39.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ||++||. |.+|+.++..|+..++  .++ ++....+  ..++......  .   .   +..+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~--~~~~~~~~~~--~---~---~~~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEK--ALRHQEEFGS--E---A---VPLERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHH--HHHHHHHHCC--E---E---CCGGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHH--HHHHHHHcCC--c---c---cccccccceeEEEecc
Confidence            8999998 9999999999998886  554 4443322  2222221110  1   1   1135677899999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.75  E-value=0.014  Score=47.73  Aligned_cols=112  Identities=20%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccccCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQALED   96 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~~   96 (256)
                      .+.|+||++.+|..++..|+..|.  +|++.|+++  ++....++.....  ++..+..+ ++          ..+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            456779999999999999999998  999999873  3334444543221  22222211 11          1233468


Q ss_pred             CCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           97 SDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        97 aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .|++|..||......   .+.   ...+..|    ....+.+++.+.+.. .+.||++|.
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS  146 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  146 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECC
Confidence            999999998654322   121   2234445    344566667776654 567777763

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.74  E-value=0.00025  Score=56.93  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |.......++|+|+|. |.+|+.++..|..-|.  +|..||.....+.         ......    .++++.++.||+|
T Consensus        38 ~~~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~~----~~l~~l~~~~D~v  101 (199)
T d1dxya1          38 FIGKELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD---------HPDFDY----VSLEDLFKQSDVI  101 (199)
T ss_dssp             CCCCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC---------CTTCEE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeeec-ccccccccccccccce--eeeccCCccchhh---------hcchhH----HHHHHHHHhcccc
Confidence            4445555679999998 9999999999987787  9999998632111         001111    2566788999999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ++.....  +. ++ .++  |    ++   .+....+++++|+++=
T Consensus       102 ~~~~plt--~~-T~-~li--~----~~---~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         102 DLHVPGI--EQ-NT-HII--N----EA---AFNLMKPGAIVINTAR  134 (199)
T ss_dssp             EECCCCC--GG-GT-TSB--C----HH---HHHHSCTTEEEEECSC
T ss_pred             eeeeccc--cc-cc-ccc--c----HH---HhhccCCceEEEeccc
Confidence            9985322  11 10 111  1    12   2333457899999984

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.74  E-value=0.011  Score=48.50  Aligned_cols=159  Identities=12%  Similarity=0.077  Sum_probs=85.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+++.|+||++.+|..++..|+++|.  +|++.|+++  ++....++.....  .+..+..+ ++          +.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999984  2233333332221  12222111 11          1122


Q ss_pred             cC-CCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHh
Q 025206           94 LE-DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (256)
Q Consensus        94 l~-~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~  162 (256)
                      +. .-|++|.+||......   .+.   ...+..|    ...++.+.+.+.+.. .+.+|+++-....           .
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~-----------~  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGF-----------S  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGT-----------S
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-ccccccccccccc-----------c
Confidence            32 4789999998754321   122   2233344    344556666666554 5566666543321           0


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCcee--EEEEeCC
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN--VPVVGGH  204 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~--~~v~G~H  204 (256)
                      + .|..-.++.+.---..|-+.+|..++  +..|+  +..-|-.
T Consensus       149 ~-~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~PG~i  189 (258)
T d1ae1a_         149 A-LPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVAPGVI  189 (258)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEECSB
T ss_pred             c-cccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEEeeCcc
Confidence            1 22111111211112346677888886  44454  5555544

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.74  E-value=0.00059  Score=52.97  Aligned_cols=67  Identities=21%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      |+++||+|+|. |.+|+.++..+.+.+-+.-+.++|.+...         ........   ..+..+...+.|+|+++.+
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeCC
Confidence            46789999998 99999988888776544334456665311         00111221   2355567789999999853

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0086  Score=49.06  Aligned_cols=110  Identities=19%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++.+|..++..|+..|.  +|++.|+++  ++....++.+.      ..+..+ ++          ..+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~------~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA------VFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE------EEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEccCCCHHHHHHHHHHHHHh
Confidence            345788999999999999999999998  999999873  22222222221      111100 11          1233


Q ss_pred             cCCCCEEEEecCCCCCCC----CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g----~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +...|++|..||.....+    .+.   ...+..|    ....+...+.+++.  .+.||+++.
T Consensus        77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS  138 (250)
T d1ydea1          77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  138 (250)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCccccc
Confidence            457899999998543222    122   2234445    34567777777665  366777763

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.72  E-value=0.00083  Score=53.72  Aligned_cols=70  Identities=26%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +.......++|+|+|. |.||+.+|..|..-|.  +|..||.........   + .    ..    ..++.+.++.||+|
T Consensus        36 ~~g~el~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~----~~----~~~l~~~l~~sDii  100 (197)
T d1j4aa1          36 TIGREVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-G----YY----VDSLDDLYKQADVI  100 (197)
T ss_dssp             CCBCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-T----CB----CSCHHHHHHHCSEE
T ss_pred             CcCccccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-e----ee----eccccccccccccc
Confidence            3344445679999998 9999999999987787  999999764321111   1 1    11    12567889999999


Q ss_pred             EEecC
Q 025206          101 IIPAG  105 (256)
Q Consensus       101 Ii~ag  105 (256)
                      +++..
T Consensus       101 ~~~~p  105 (197)
T d1j4aa1         101 SLHVP  105 (197)
T ss_dssp             EECSC
T ss_pred             cccCC
Confidence            99863

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.015  Score=47.30  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      .+.+.|+||++.+|..++..|++.|.  +|++.|+++  ++....++...     ...+..+ ++          ..+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHh
Confidence            34678889999999999999999998  999999983  33333444321     1111100 11          12334


Q ss_pred             CCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 025206           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ...|++|..||......   .+.   .+.+..|+    ...+.+.+.+.+. +.+.||+++..
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~  140 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI  140 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccc
Confidence            67999999998753221   122   23344553    3445566666655 35677777643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.70  E-value=0.016  Score=47.45  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-CchhHHHHHhcccCCCcEEEEecC--Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGN--DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-~~~g~~~dl~~~~~~~~v~~~~~t--~d----------~~ea   93 (256)
                      +.+.|.|+||++.+|..+|..|+.+|.  .|++++.+ +......++........+..+..+  .+          ..+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999997  77777544 222122223221111122222211  01          1123


Q ss_pred             cCCCCEEEEecCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHh--CCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKY--CPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g~~r~d~~~~N~----~i~~~i~~~i~~~--~p~~~iiv~t  145 (256)
                      +...|++|..||....  ++-...+..|+    ...+.+++.+.+.  .+.+.||+++
T Consensus        82 ~g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          82 LKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             HSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             cCCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            4689999999996533  23344556664    3567777777554  3567787775

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.69  E-value=0.0096  Score=48.90  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---c-------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---Q-------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d-------~~eal   94 (256)
                      .+.+.|+||++-+|..++..|+.+|.  +|++.|++.  +.....++..     ++..+..+ +   +       ..+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999998  999999873  2222233321     12111110 1   1       11234


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ...|++|..||......   .+   ....+..|+    ...+.+++.+.+.. .+.||+++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            67999999998753221   12   223455554    45566666666554 567777764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.68  E-value=0.0011  Score=53.86  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -||.|+||+|.+|..++..|++.|.  +|+++|++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~   35 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLS   35 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECC
Confidence            4899999999999999999999998  99999987

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.68  E-value=0.0096  Score=49.45  Aligned_cols=77  Identities=13%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~   95 (256)
                      +.+.|+||+|.+|..+|..|+..|.  +|++.|++.  +...+.++.... ......+..+ .+          ..+...
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            4578899999999999999999998  999999983  333344443221 1112222111 11          123346


Q ss_pred             CCCEEEEecCCCC
Q 025206           96 DSDVVIIPAGVPR  108 (256)
Q Consensus        96 ~aDvVIi~ag~~~  108 (256)
                      ..|++|.+||...
T Consensus       103 ~iDilvnnAg~~~  115 (294)
T d1w6ua_         103 HPNIVINNAAGNF  115 (294)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             ccchhhhhhhhcc
Confidence            7999999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.67  E-value=0.00084  Score=53.73  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..+||+|||| |..|.+.|+.|.++|+  +|.++|.+
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGY--SVHILARD   38 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            3469999998 9999999999999999  99999974

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.66  E-value=0.012  Score=48.64  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecC-Cc----------cccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t-~d----------~~ea   93 (256)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ++....++.+.... .++..+..+ ++          ..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999999998  999999983  33444455443221 123333211 11          1123


Q ss_pred             cCCCCEEEEecCCCCCCC-------CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKPG-------MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-------~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +...|++|..||......       ++.   ...+..|+    ...+.+.+.+.+. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            457899999998753211       111   22334454    3556666666554 445555554

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00069  Score=55.73  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-------CccccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-------DQLGQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-------~d~~eal~~aDvV  100 (256)
                      .+.+.|+||++.+|..++..|+.+|.  +|++.|+++..  ..++.+..   .++....+       ....+.+...|++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc---CCceeeeeccccccccccccccccceeE
Confidence            34678889999999999999999998  99999987311  11122211   11111111       1122345789999


Q ss_pred             EEecCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcE
Q 025206          101 IIPAGVPRKPG---MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (256)
Q Consensus       101 Ii~ag~~~~~g---~~r~---d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kv  170 (256)
                      |.++|.+....   .+..   ..+.-|    ....+.+.+.+.+. +.+.+++++......          .+ ++..-.
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~----------~~-~~~~~~  146 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV----------KG-VVNRCV  146 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------BC-CTTBHH
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc----------CC-ccchhH
Confidence            99998764321   2222   223334    34556666666555 456666675433210          00 111111


Q ss_pred             EEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                      ++.+.---..+-+.+|..++  +..|++-.+-
T Consensus       147 Y~~sKaal~~l~r~lA~e~~--~~gIrvN~I~  176 (245)
T d2ag5a1         147 YSTTKAAVIGLTKSVAADFI--QQGIRCNCVC  176 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            11211112456677888886  5566654443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.011  Score=48.37  Aligned_cols=114  Identities=15%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      +.+.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++....++....  .++..+..+ ++          ..+.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  999999873  333334444322  122222211 11          1223


Q ss_pred             cCCCCEEEEecCCCCCC--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~--g~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +..-|++|..||.....  ..+..   ..+..|+    ...+.+++.+.+.. .+.||+++
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            46899999999875322  12222   2344453    45566777777665 44555555

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.61  E-value=0.00059  Score=56.26  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .++...+++||+|||| |..|.+.|..|+++|+  +|+++|..
T Consensus        23 ~~~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~   62 (370)
T d2iida1          23 GLKATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEAS   62 (370)
T ss_dssp             CSCCCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             CCCCCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            3455567789999998 9999999999999998  99999975

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.61  E-value=0.0048  Score=50.66  Aligned_cols=112  Identities=20%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             eE-EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccccC
Q 025206           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE   95 (256)
Q Consensus        30 KI-~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~   95 (256)
                      || .|+||++-+|..+|..|+++|.  +|++.|+++  ++....++.+..  .++..+..+ ++          ..+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 5789999999999999999998  999999983  333344454322  122222211 11          123346


Q ss_pred             CCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEec
Q 025206           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMIS  145 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-----~p~~~iiv~t  145 (256)
                      ..|++|..||......   .+   -.+.+..|+.-...+.+.+-++     ...+.||+++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            7999999999754321   12   2344566665555555544332     2335666664

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.0018  Score=53.31  Aligned_cols=116  Identities=18%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEec----CCccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~----t~d~~eal~~aDvVIi  102 (256)
                      .+.+.|+||++.+|..++..|+++|.  +|++.|+++. ......+.......++.....    -....+.+...|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            34788999999999999999999998  9999999842 222222221111111110000    0012234568999999


Q ss_pred             ecCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206          103 PAGVPRKPG---MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       103 ~ag~~~~~g---~~r~---d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .||......   .+..   ..+..|+    ...+.+.+.+.+.. .+.||+++.
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS  135 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVAS  135 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECC
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-ccccccccc
Confidence            998753211   1222   2344553    45566666666543 567777764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0015  Score=50.52  Aligned_cols=74  Identities=23%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccC--CCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      ..+||+|+|++|.+|+.++..+.+.+-+.=+..+|.........|+.....  ...+..   +.++++.++++|+||=-
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            457999999999999999998877653222344565421111122222111  112222   23566788899988653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.013  Score=47.65  Aligned_cols=151  Identities=18%  Similarity=0.249  Sum_probs=84.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEec-CCc----------cccccC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~eal~   95 (256)
                      +.+.|+||++.+|..++..|++.|.  .|++.|+++  ++....++...     ...+.. -++          ..+.+.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhcccC
Confidence            4677889999999999999999998  999999873  23333333211     111110 011          123345


Q ss_pred             CCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCC
Q 025206           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~  165 (256)
                      ..|++|..||......   .+.   ...+..|    ....+.+.+.+.+.. .+.||++|....           ..+ .
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~-----------~~~-~  144 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG-----------TMG-N  144 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-C
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh-----------cCC-C
Confidence            7999999998754322   122   2234445    345566777766654 567777763211           112 2


Q ss_pred             CCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEE
Q 025206          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (256)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (256)
                      |..-.++.+.--...|-+.+|..++  +..|++-.+
T Consensus       145 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I  178 (243)
T d1q7ba_         145 GGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVV  178 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            2222222222223456677888875  455654433

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.005  Score=49.85  Aligned_cols=159  Identities=15%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHH-hcccCC--CcEEEEecCCcccccc--CCCCEEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTR--SEVAGYMGNDQLGQAL--EDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl-~~~~~~--~~v~~~~~t~d~~eal--~~aDvVIi  102 (256)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|.++........ .+....  ......  .....+.+  ...|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            35899999999999999999999998  99999986311000000 000000  000000  00111122  24799999


Q ss_pred             ecCCCC--CCC-CCH----HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEe
Q 025206          103 PAGVPR--KPG-MTR----DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (256)
Q Consensus       103 ~ag~~~--~~g-~~r----~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t  174 (256)
                      +||...  .+- +..    ...+..|+.....+++.+.++- +.+.|++++.-...           .+ .|..-.++.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-----------~~-~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL-----------DG-TPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc-----------CC-ccCCcccHHH
Confidence            998522  111 222    2235566555545555544443 45777777632211           01 1111111111


Q ss_pred             echHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          175 TLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                      .---..|-+.+|..++-.+..|++..+.
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            1112456667777776445677766554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.56  E-value=0.013  Score=47.62  Aligned_cols=157  Identities=16%  Similarity=0.086  Sum_probs=89.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC----Cc-------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQ-------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d-------~~eal   94 (256)
                      .+++.|+||++.+|..+|..|+.+|.  +|++.+++.  +.....++..     ++..+..+    .+       ..+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998  999999873  2222222221     12111111    11       12334


Q ss_pred             CCCCEEEEecCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHhCCCCC
Q 025206           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~  167 (256)
                      ..-|++|..||.+....   .+   -.+.+..|+.....+.+...++. ....+++.|.....-.+-  .          
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~--~----------  145 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG--L----------  145 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH--H----------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC--c----------
Confidence            67999999987643221   12   23446677777777777766666 344555555443321111  0          


Q ss_pred             CcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEeCC
Q 025206          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGH  204 (256)
Q Consensus       168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~H  204 (256)
                       ..++.+.--...|-+.+|+.++-.--.|++..-|-.
T Consensus       146 -~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v  181 (241)
T d2a4ka1         146 -AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLI  181 (241)
T ss_dssp             -HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSB
T ss_pred             -cccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcC
Confidence             111223223346788899999643333444555543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.56  E-value=0.01  Score=48.61  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEec----CCcc-------cc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMG----NDQL-------GQ   92 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~----t~d~-------~e   92 (256)
                      +.+.+.|+||++-+|..+|..|+.+|.  +|++.|++.   ++....++.... ..++..+..    ..++       .+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            344678889999999999999999998  999999863   222222332111 011211110    0111       12


Q ss_pred             ccCCCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .+-..|++|..||......   .+.   ...+..|    ....+.+++.+.+.. .+.||+++.
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS  142 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccc
Confidence            3457999999999754321   122   2334455    445566777777654 466777764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.55  E-value=0.01  Score=48.79  Aligned_cols=114  Identities=12%  Similarity=0.071  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ++....++....  .+...+..+ ++          ..+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            44788999999999999999999998  999999983  333334443321  122222111 11          11223


Q ss_pred             C-CCCEEEEecCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 025206           95 E-DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        95 ~-~aDvVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      . ..|++|..||......   .+.   ...+..|+.    ..+...+.+.+. ..+.||+++.
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS  145 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  145 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccccc
Confidence            4 4899999998754322   222   234555543    345555555544 4566766653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.55  E-value=0.001  Score=50.95  Aligned_cols=70  Identities=21%  Similarity=0.407  Sum_probs=44.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      -||+|+||+|++|.-+...|..+++ ..++.++..++..|..  +....  .......   .......++|+++++++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~~--~~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFKD--QDITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEETT--EEEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--ccccC--Ccccccc---cchhhhhhhhhhhhccC
Confidence            3899999999999999999988864 5678877654322221  11111  1111111   12356789999999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.51  E-value=0.0093  Score=48.84  Aligned_cols=80  Identities=13%  Similarity=0.074  Sum_probs=51.2

Q ss_pred             CCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC---------Ccccccc
Q 025206           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQAL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t---------~d~~eal   94 (256)
                      +.+++.|+||+|  .+|.++|..|+..|.  +|++.|+++ +...+.++........+.....+         ....+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            345899999877  599999999999998  999999984 33334444432211111110001         1123445


Q ss_pred             CCCCEEEEecCCCC
Q 025206           95 EDSDVVIIPAGVPR  108 (256)
Q Consensus        95 ~~aDvVIi~ag~~~  108 (256)
                      ...|++|.++|...
T Consensus        82 g~id~lV~nag~~~   95 (274)
T d2pd4a1          82 GSLDFIVHSVAFAP   95 (274)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCCCeEEeeccccc
Confidence            78999999998643

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0024  Score=51.89  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             cccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC----------chhHHHHHhcccCCCcE
Q 025206           12 LAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----------TPGVAADVGHINTRSEV   81 (256)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~----------~~g~~~dl~~~~~~~~v   81 (256)
                      ||-.+.+-+-..+..+..||.+.|| |..|..++..|...+. ++++++|.+-          ......++.+.......
T Consensus        10 LAgll~a~~~~g~~l~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~   87 (222)
T d1vl6a1          10 SAAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL   87 (222)
T ss_dssp             HHHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC
T ss_pred             HHHHHHHHHHhCCChhhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchhh
Confidence            3333444343444456679999998 9999999999987764 6999999871          11112222221111111


Q ss_pred             EEEecCCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCch
Q 025206           82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (256)
Q Consensus        82 ~~~~~t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~  152 (256)
                           ..++.++++++++++-+..    +|.-+.              +.|++.++..+|+-.|||.....
T Consensus        88 -----~~~l~~~l~g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          88 -----SGDLETALEGADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             -----CSCHHHHHTTCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSC
T ss_pred             -----hcchHhhccCcceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchh
Confidence                 2366789999998776642    222111              24556688899999999977654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.48  E-value=0.0023  Score=50.72  Aligned_cols=104  Identities=22%  Similarity=0.275  Sum_probs=65.1

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      +........+|+|||. |.||+.++..+..-|.  ++..+|............. .    ..    ..++.+.++.||+|
T Consensus        40 ~~~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-~----~~----~~~l~~ll~~sD~v  107 (191)
T d1gdha1          40 LVGEKLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-A----TF----HDSLDSLLSVSQFF  107 (191)
T ss_dssp             TCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-C----EE----CSSHHHHHHHCSEE
T ss_pred             cccceecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhccc-c----cc----cCCHHHHHhhCCeE
Confidence            3334445679999998 9999999999987777  9999998643222111111 0    11    23567889999999


Q ss_pred             EEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCCC
Q 025206          101 IIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVNS  150 (256)
Q Consensus       101 Ii~ag~-~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~  150 (256)
                      ++.... +...+.     +  |    ++   .+....|++++||++=  -+|.
T Consensus       108 ~l~~plt~~T~~l-----i--~----~~---~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1         108 SLNAPSTPETRYF-----F--N----KA---TIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             EECCCCCTTTTTC-----B--S----HH---HHTTSCTTEEEEECSCGGGBCH
T ss_pred             EecCCCCchHhhe-----e--c----HH---HhhCcCCccEEEecCCccchhh
Confidence            997533 221121     1  1    11   2223457899999973  3553

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.0031  Score=49.58  Aligned_cols=101  Identities=26%  Similarity=0.373  Sum_probs=65.5

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      |.......++++|+|. |.+|+.++..+..-|.  +|..+|.........+..       ++    ..++++.++.||+|
T Consensus        37 ~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~----~~~l~ell~~sDiv  102 (184)
T d1ygya1          37 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IE----LLSLDDLLARADFI  102 (184)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CE----ECCHHHHHHHCSEE
T ss_pred             cccccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------ce----eccHHHHHhhCCEE
Confidence            4445556679999998 9999999999987676  999999864333222221       11    12456889999999


Q ss_pred             EEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          101 IIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       101 Ii~ag~-~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      +++... +...+.     +  |.       +.+....|++++|+++-  =+|
T Consensus       103 ~~~~Plt~~T~~l-----i--n~-------~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1         103 SVHLPKTPETAGL-----I--DK-------EALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             EECCCCSTTTTTC-----B--CH-------HHHTTSCTTEEEEECSCTTSBC
T ss_pred             EEcCCCCchhhhh-----h--hH-------HHHhhhCCCceEEEecchhhhh
Confidence            998642 211121     1  11       12233458899999983  355

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.40  E-value=0.021  Score=46.77  Aligned_cols=115  Identities=16%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCC-CcEEEEecC-Cc---c-------ccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGN-DQ---L-------GQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~-~~v~~~~~t-~d---~-------~ea   93 (256)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|++.  ++....++...... .++..+..+ ++   +       .+.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34567889999999999999999998  999999983  33444555433211 123333211 11   1       123


Q ss_pred             cCCCCEEEEecCCCCCCC-------CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 025206           94 LEDSDVVIIPAGVPRKPG-------MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-------~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      +...|++|..||......       .+.   ...+..|+    ...+.+.+.+++. ..++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            457999999998642111       122   22344453    3556667766654 344554444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0019  Score=50.88  Aligned_cols=94  Identities=24%  Similarity=0.352  Sum_probs=62.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...++|+|+|. |.+|..++..+..-|.  +|..+|.......    .+     ...    ..++++.++.||+|+++..
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~~-----~~~----~~~l~ell~~sDii~i~~p  105 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----GN-----ATQ----VQHLSDLLNMSDVVSLHVP  105 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----TT-----CEE----CSCHHHHHHHCSEEEECCC
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----hh-----hhh----hhhHHHHHhhccceeeccc
Confidence            45579999998 9999999999987787  9999997531100    00     111    2356788999999999865


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--CCC
Q 025206          106 VPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (256)
Q Consensus       106 ~~~-~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd  149 (256)
                      ... ..+.     +  |    ++.   ++...+++++|+++-  =+|
T Consensus       106 lt~~T~~l-----i--~----~~~---l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1         106 ENPSTKNM-----M--G----AKE---ISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             SSTTTTTC-----B--C----HHH---HHHSCTTEEEEECSCSSSBC
T ss_pred             CCcchhhh-----c--c----HHH---HhhCCCCCEEEEcCcHHhhh
Confidence            332 1121     1  1    122   233467899999983  355

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.38  E-value=0.0011  Score=54.23  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--h---hHHHHHhcccCCCcEEEEecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~---g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|++..  +   ....|+.+..   .++..  -....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHH--HHHHHHhcCCceEEE
Confidence            345789999999999999999999998  9999998731  1   1112222211   00000  001233456899999


Q ss_pred             EecCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 025206          102 IPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (256)
Q Consensus       102 i~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~~~iiv~tNPv  148 (256)
                      ..||.....   ..+.   ...+..|+.    ..+.+++.+.+.. .+.||+++.-.
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~  134 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVS  134 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchh
Confidence            999875321   1222   233455543    4456666666554 45677776433

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.37  E-value=0.012  Score=48.20  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccC--CCcEEEEec----CCccccccCCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~--~~~v~~~~~----t~d~~eal~~aD   98 (256)
                      +.+.+.|+||++.+|..++..|+..|.  +|++.|+++  ++....++.....  ...+.....    -....+.+..-|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            345778889999999999999999998  999999873  2333333432110  111100000    001123346789


Q ss_pred             EEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206           99 VVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus        99 vVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ++|..||......   .+.   ...+..|    ....+.+.+.+++.  .+.||+++..
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~  139 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV  139 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence            9999999754221   122   2234445    34556666666543  4777777643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.012  Score=40.54  Aligned_cols=70  Identities=24%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           29 RKVAVLGAAGGIGQ-PLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        29 ~KI~IIGaaG~VG~-~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      |||-+||- |-+|+ ++|..|.++|+  +|.-.|.... .....|+...    ++++.+ .+ .+.++++|+||.+.+.|
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~t~~L~~~G----i~i~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEET-ERTAYLRKLG----IPIFVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCC-HHHHHHHHTT----CCEESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCC-hhHHHHHHCC----CeEEee-ec-ccccCCCCEEEEecCcC
Confidence            79999998 88888 68999999999  9999998742 2223466544    223332 23 35678999999998776


Q ss_pred             C
Q 025206          108 R  108 (256)
Q Consensus       108 ~  108 (256)
                      .
T Consensus        72 ~   72 (89)
T d1j6ua1          72 D   72 (89)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.35  E-value=0.028  Score=46.36  Aligned_cols=110  Identities=24%  Similarity=0.323  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-C---c-------ccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---Q-------LGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d-------~~eal   94 (256)
                      .+.+.|+||++.+|..++..|+.+|.  +|++.|++.  +.....++..     ++..+..+ +   +       ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  999999873  2222233322     11111110 1   1       12335


Q ss_pred             CCCCEEEEecCCCCCCC-------CC----HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKPG-------MT----RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g-------~~----r~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ...|++|..||......       +.    -...+..|    ....+.+.+.+.+.. ..+|++.|
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            68999999998632211       11    12234444    345666777776653 33444443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.037  Score=45.22  Aligned_cols=115  Identities=13%  Similarity=0.082  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---c-------ccc
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---L-------GQA   93 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~-------~ea   93 (256)
                      +.+.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++.....  ++..+..+ ++   +       .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  999999883  3333344443221  22222211 11   1       122


Q ss_pred             cC-CCCEEEEecCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 LE-DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l~-~aDvVIi~ag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      +. ..|++|..||.....   ..+.   ...+..|+    ...+.+.+.+++.. .+.||+++.
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS  145 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSS  145 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-ccccccccc
Confidence            33 479999999864321   1222   22344554    34566666666554 456777764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0052  Score=46.97  Aligned_cols=132  Identities=17%  Similarity=0.307  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +..+|.|+|+ |.||...+..+...|.  +++.+|.+..+ ..+..+-   .. .+-.+..........++.|+||.+.|
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---ad-~~i~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---AD-EVVNSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---CS-EEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---Cc-EEEECchhhHHHHhcCCCceeeeeee
Confidence            3468999998 9999998888888887  77788876422 2223332   11 11111101122234568999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE---eechHHHHH
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVVRAK  182 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~---t~lds~R~~  182 (256)
                      .+..               +.   ..+.-..|.+.++.++-|.+....+.  .....  +...+++|.   +.-|..++-
T Consensus       103 ~~~~---------------~~---~~~~~l~~~G~iv~~G~~~~~~~~~~--~~~l~--~k~~~i~Gs~~~~~~d~~e~l  160 (168)
T d1uufa2         103 APHN---------------LD---DFTTLLKRDGTMTLVGAPATPHKSPE--VFNLI--MKRRAIAGSMIGGIPETQEML  160 (168)
T ss_dssp             SCCC---------------HH---HHHTTEEEEEEEEECCCC-------C--HHHHH--TTTCEEEECCSCCHHHHHHHH
T ss_pred             cchh---------------HH---HHHHHHhcCCEEEEeccCCCCccccc--HHHHH--HCCcEEEEEeecCHHHHHHHH
Confidence            5421               11   11223347888888876554322111  11111  345688888   234555555


Q ss_pred             HHHHH
Q 025206          183 TFYAG  187 (256)
Q Consensus       183 ~~la~  187 (256)
                      .++++
T Consensus       161 ~l~a~  165 (168)
T d1uufa2         161 DFCAE  165 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.016  Score=46.91  Aligned_cols=160  Identities=14%  Similarity=0.141  Sum_probs=82.6

Q ss_pred             CCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEecC---------Ccccccc
Q 025206           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQAL   94 (256)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~~t---------~d~~eal   94 (256)
                      +.+++.|+||+|  -+|..+|..|+++|.  +|++.|.+. ....+.++..............+         ....+..
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            345889999966  588999999999998  999999873 33333333322111111100000         0112334


Q ss_pred             CCCCEEEEecCCCCCCCC-------CHHH----HHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCchHHHHHHHHHh
Q 025206           95 EDSDVVIIPAGVPRKPGM-------TRDD----LFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA  162 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g~-------~r~d----~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~i~~~~~~~~  162 (256)
                      ...|++|..++.......       ...+    .+.-|......+.+.+..+- +...++++|.....           .
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------~  150 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------R  150 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------S
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------c
Confidence            567889988865322110       0111    22334444455555555444 44556666543211           0


Q ss_pred             CCCCCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEEe
Q 025206          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (256)
Q Consensus       163 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (256)
                      + .|..-.++.+.--...+-+.+|..++  +..|++-.+-
T Consensus       151 ~-~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         151 A-IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             B-CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             C-CCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence            1 12111222221123457788899986  5667765553

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00016  Score=61.53  Aligned_cols=121  Identities=23%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             ccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHH----cCCCc-----cEEEEEeCCCc--hhHHHHHh--cccCCC
Q 025206           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMK----LNPLV-----SRLALYDIANT--PGVAADVG--HINTRS   79 (256)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~----~~~~~-----~eV~LiD~~~~--~g~~~dl~--~~~~~~   79 (256)
                      |-.+.+-+...+.....||++.|| |.-|..++..|.    ..|+-     +.|+++|.+-+  ++..-++.  +..+- 
T Consensus        10 AglinAlki~gk~l~d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a-   87 (294)
T d1pj3a1          10 AGLLAAQKVISKPISEHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT-   87 (294)
T ss_dssp             HHHHHHHHHHCCCGGGCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGC-
T ss_pred             HHHHHHHHHhCCCHHHcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhh-
Confidence            333333333344445569999998 999999888754    33441     46999998721  11100111  11110 


Q ss_pred             cEEEEecCCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           80 EVAGYMGNDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        80 ~v~~~~~t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      +-.......++.++++  +.|++|-+.+.+.-              +.+++++.|.+.+++.+|+-.|||..
T Consensus        88 ~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~--------------ft~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1          88 HSAPESIPDTFEDAVNILKPSTIIGVAGAGRL--------------FTPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             BCCCSSCCSSHHHHHHHHCCSEEEECCCSSCC--------------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             ccccccchhHHHHHHHhcCCceEEEecCCCCc--------------CCHHHHHHHHhcCCCcEEEEccCCCC
Confidence            0000001124666665  78888887654421              13677788888999999999999964

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.19  E-value=0.0056  Score=48.08  Aligned_cols=93  Identities=15%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ...+|+|+|. |.+|..++..|..-|.  +|..+|.... .....+..       +..   ..++.+.+++||+|++...
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhccc
Confidence            5579999998 9999999999987777  9999998642 22212111       111   2356788999999999864


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          106 VPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       106 ~~~-~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ... ..+.     +  |    +   +.+....+++++|+++-
T Consensus       110 lt~~T~~l-----i--~----~---~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         110 LHPETEHM-----I--N----D---ETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             CCTTTTTC-----B--S----H---HHHTTSCTTEEEEECSC
T ss_pred             ccccchhh-----h--H----H---HHHHhCCCCCEEEecCc
Confidence            321 1111     1  1    1   12233457889999974

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.17  E-value=0.0021  Score=51.75  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+||+|||| |..|.++|..|+.+|+  +|+++|..
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            469999998 9999999999999999  99999975

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.024  Score=42.32  Aligned_cols=100  Identities=11%  Similarity=0.053  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecC-Cc---c-ccccCCCCEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVV  100 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~-~eal~~aDvV  100 (256)
                      +.+|.|+|. |.+|..++..|...|.  +++++|.++-  .....++....    +....|. ++   | ...+++||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhccccCCEE
Confidence            457999998 9999999999999998  9999998742  22223332211    2222222 12   2 2246889999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCC
Q 025206          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVN  149 (256)
Q Consensus       101 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd  149 (256)
                      |++.+.         |  ..|+.+    +..+++.+|+..++.- .+|..
T Consensus        76 i~~~~~---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDN---------D--ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEcccc---------H--HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            998421         1  234433    3455667888655444 45655

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.09  E-value=0.0017  Score=52.22  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |||+|||| |.-|.+.|..|.++|+  +|++++..
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESS   32 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecC
Confidence            68999998 9999999999999998  99999875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.027  Score=47.31  Aligned_cols=114  Identities=18%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC-------c----hhHHHHHhcccCCCcEEEEe-cCCc------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------T----PGVAADVGHINTRSEVAGYM-GNDQ------   89 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~-------~----~g~~~dl~~~~~~~~v~~~~-~t~d------   89 (256)
                      .+.+.|+||++.+|..+|..|+.+|.  .|++.|++.       .    +....++.....  ...... ...+      
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc--ccccccchHHHHHHHHH
Confidence            34678889999999999999999998  999998762       1    111222221111  111111 0111      


Q ss_pred             -cccccCCCCEEEEecCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 025206           90 -LGQALEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        90 -~~eal~~aDvVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                       ..+.+...|++|..||......   .+.   ...+..|+    ...+.+++.+.+.. .+.||+++.
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS  149 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  149 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCC
Confidence             1123457999999999754321   122   23344554    45667777777665 467777753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0061  Score=47.01  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=59.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~~  107 (256)
                      -++++|+|- |.||..+|..+...|.  .|..+|+++.+.... ..+..   .+      ..+++++..+|+||.+-|..
T Consensus        24 Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          24 GKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTTTCSEEEECSSCS
T ss_pred             CCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhhhccEEEecCCCc
Confidence            358999998 9999999999998887  999999986433211 12211   11      14568999999999987643


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       108 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      .-  .            -   .+.+++..+.+++.+++
T Consensus        91 ~v--I------------~---~eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          91 DI--I------------L---GRHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             CS--B------------C---HHHHTTCCTTEEEEECS
T ss_pred             cc--h------------h---HHHHHhccCCeEEEEec
Confidence            21  0            1   12334445678888876

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.03  E-value=0.018  Score=46.86  Aligned_cols=111  Identities=13%  Similarity=0.043  Sum_probs=65.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCc-------cccccCCCCEEE
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ-------LGQALEDSDVVI  101 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d-------~~eal~~aDvVI  101 (256)
                      ...|+||++.+|..+|..|++.|.  +|++.|++.. ......+........+.   ...+       ..+.+-..|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~---~~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPM---SEQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEEC---CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            357999999999999999999998  9999998731 11111111111111111   0112       123445799999


Q ss_pred             EecCCCCCCC----CCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206          102 IPAGVPRKPG----MTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus       102 i~ag~~~~~g----~~r~d---~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      ..||.....+    .+..|   .+..|    ....+.+++.+.+.. .+.||++|.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS  131 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  131 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccc
Confidence            9988532221    22222   23334    445677788887665 456667764

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.015  Score=44.00  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=40.7

Q ss_pred             CceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCchh--HHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++||+|||+ |.+|.. ....+...+-+.-+.++|.+....  ...+..       +..   .+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------IPY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------CCB---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------ccc---cccchhhhhhcccccccc
Confidence            479999998 999975 566666554443456778874322  222221       111   224456678999999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.91  E-value=0.055  Score=40.77  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCch-hHHHHHhcccCCCcEEEEecCCccc---ccc-----CCCCE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLG---QAL-----EDSDV   99 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~---eal-----~~aDv   99 (256)
                      .+|.|+|+ |.||...+..+...|.  +|+.+|.++.+ ..+.++..   ...+.......+..   +.+     .++|+
T Consensus        28 ~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          28 TTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCce
Confidence            48999997 9999999988888886  89999987422 22333321   10010000011111   111     46899


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ||.++|.+               ..+...   ++-..|.+.+++++.|.+
T Consensus       102 vid~~g~~---------------~~~~~a---~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         102 TIDCSGNE---------------KCITIG---INITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             EEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCSS
T ss_pred             eeecCCCh---------------HHHHHH---HHHHhcCCceEEEecCCC
Confidence            99998643               111222   223358899998987643

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.81  E-value=0.0065  Score=52.34  Aligned_cols=93  Identities=17%  Similarity=0.255  Sum_probs=59.3

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHH-cCCCccEEEEEeCCC--chhHHHHHhcccCCCcE
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~-~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v   81 (256)
                      .|-.++|-|--+-+-+++... ....++|||+ |..+...+..+. ..+ +.+|.++|+++  ....+.++.+. ....+
T Consensus       106 ~LTa~RTaA~salaa~~LA~~-da~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~-~g~~v  181 (340)
T d1x7da_         106 IATALRTAATSLMAAQALARP-NARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY-SGLTI  181 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC-TTCEE
T ss_pred             hhhhhHHHHHHHHHHHHhhcc-CCceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhc-cCCCc
Confidence            444555655555555566554 3458999998 988886665443 345 67999999984  23344445431 12233


Q ss_pred             EEEecCCccccccCCCCEEEEec
Q 025206           82 AGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        82 ~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..   ..++++++++||+|+.+-
T Consensus       182 ~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         182 RR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             EE---CSSHHHHHTTCSEEEECC
T ss_pred             ee---cCCHHHHHhcCCceeecc
Confidence            32   457789999999998754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.80  E-value=0.0041  Score=52.67  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .+||+|||| |.-|.+.|..|+++|+  +|.+++.+.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            569999998 9999999999999998  999999873

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.79  E-value=0.037  Score=44.68  Aligned_cols=113  Identities=18%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC-----ccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------ccc
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQ   92 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~-----~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~e   92 (256)
                      |.|+||++-+|..++..|+.+|.     ...|+++|++.  ++....++....  .+...+..+ ++          ..+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            46889999999999999999885     11388899873  333444454322  122222111 11          223


Q ss_pred             ccCCCCEEEEecCCCCCCC---CC---HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      .+...|++|..||......   .+   -...+..|    +...+.+.+.+++.. .+.+|+++.
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS  144 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITS  144 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEec
Confidence            3567999999998754221   12   22344555    345677777776654 566777764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.79  E-value=0.0037  Score=50.00  Aligned_cols=32  Identities=31%  Similarity=0.586  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +||+|||| |.-|.+.|+.|++.|+  +|+++|..
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~   33 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAE   33 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCC
Confidence            58999998 9999999999999999  99999965

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.76  E-value=0.0047  Score=44.44  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.....|.||+|||| |++|.-+|..+...|.  +|++++..
T Consensus        16 l~~~~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~   54 (117)
T d1ebda2          16 LNLGEVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGA   54 (117)
T ss_dssp             HTCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             hChhhcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEec
Confidence            344445679999999 9999999999999998  99999876

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.69  E-value=0.0035  Score=48.30  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.||+|||| |..|...|..|...|+ ++|.++|..
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQ   37 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEec
Confidence            469999998 9999999999999997 359999976

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.62  E-value=0.062  Score=43.42  Aligned_cols=153  Identities=20%  Similarity=0.254  Sum_probs=84.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc----------cccccC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE   95 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal~   95 (256)
                      -|.|+||++.+|..++..|+..|.  +|++.|.+.   ++....++....  .++..+..+ ++          ..+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            367889999999999999999998  899887753   222223333211  122222111 11          122346


Q ss_pred             CCCEEEEecCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCC
Q 025206           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (256)
Q Consensus        96 ~aDvVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~  165 (256)
                      ..|++|..||......   .+.   ...+..|    ....+.+++.+.+. ..+.||++|.-..           ..+ .
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~-----------~~~-~  145 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG-----------LIG-N  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-C
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh-----------cCC-C
Confidence            7999999998754321   121   2234445    34566677777665 4567777764221           112 2


Q ss_pred             CCCcEEEEeechHHHHHHHHHHHcCCCCCceeEEEE
Q 025206          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (256)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (256)
                      |..-.++.+.---..|-+.+|..++  +..|++-.+
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            2222222222223456777888875  455655444

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.55  E-value=0.0072  Score=43.72  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++.||+|||| |++|.-+|..|...|.  +|++++..
T Consensus        21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~   54 (117)
T d1onfa2          21 ESKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARG   54 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSS
T ss_pred             CCCEEEEECC-chHHHHHHHHHHhccc--cceeeehh
Confidence            3679999998 9999999999998887  99999875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.016  Score=44.67  Aligned_cols=70  Identities=13%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeCCCchhHHHHHhc-ccCCCcEEEEecCCcccccc--CCCCEEEEe
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~eal--~~aDvVIi~  103 (256)
                      ++||+|||+ |.+|...+..+...+.+ +|+ ++|.+....  .++.. ...+...+.+   +++++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKA--KAFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHH--HHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCcccc--ccchhccccccceeec---CcHHHhhhccccceeeec
Confidence            369999998 99999988887765433 655 568763221  11211 1122223333   2555554  578999987


Q ss_pred             c
Q 025206          104 A  104 (256)
Q Consensus       104 a  104 (256)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.51  E-value=0.0059  Score=49.13  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |+||+|||| |..|.++|..|.+.|+ ..|.+++..
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~   34 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESS   34 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCC
Confidence            689999998 9999999999999994 288999876

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.46  E-value=0.0027  Score=46.39  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..+|+|||| |++|.-+|..|...|.  +|.+++..
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~   62 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQ   62 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeec
Confidence            468999998 9999999999999998  99999976

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0071  Score=43.55  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|.||+|||+ |++|.-+|..|...|.  +|.+++..
T Consensus        20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~   53 (116)
T d1gesa2          20 LPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMF   53 (116)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeec
Confidence            4679999998 9999999999999998  99999876

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.019  Score=44.44  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..++|+|||.+.-||.+++..|.++|-  .|..++..
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~   72 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK   72 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEecc
Confidence            456999999988999999999999987  88888764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0075  Score=43.87  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .....|.|++|||| |++|.-+|..|...|.  +|.+++..
T Consensus        18 ~l~~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~   55 (122)
T d1v59a2          18 SLKEIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQ   55 (122)
T ss_dssp             TCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CcccCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEec
Confidence            33345679999998 9999999999999998  99999876

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.36  E-value=0.005  Score=49.97  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|+|||| |.+|.++|+.|+++|.  +|+++|.+
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESG   36 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            4999998 9999999999999998  99999975

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.061  Score=43.56  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             eEE-EEcCCCCcHHHHHHHHHc---CCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc---cccc------
Q 025206           30 KVA-VLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (256)
Q Consensus        30 KI~-IIGaaG~VG~~la~~l~~---~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~ea------   93 (256)
                      ||+ |+||++.+|..+|..|+.   +|.  .|++.|++.  ++....++.......++..+..+ ++   +++.      
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            555 559999999999999985   576  999999873  33344445432222233333221 12   1111      


Q ss_pred             -----cCCCCEEEEecCCCCC--CC----CCH---HHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 025206           94 -----LEDSDVVIIPAGVPRK--PG----MTR---DDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISN  146 (256)
Q Consensus        94 -----l~~aDvVIi~ag~~~~--~g----~~r---~d~~~~N~~i~~~i~~~i~~~~-----p~~~iiv~tN  146 (256)
                           .-+.|++|..||....  .+    .+.   ...+..|+.....+.+.+.++-     +.+.||+++.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                 1245677777775321  11    122   2345566555444444444332     2456776653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.04  Score=40.99  Aligned_cols=35  Identities=17%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.++|.|||| |.+|..-+..|+..|-  +|++++..
T Consensus        11 l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            35569999999 9999999999999987  99999643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.24  E-value=0.0086  Score=43.58  Aligned_cols=40  Identities=18%  Similarity=0.009  Sum_probs=33.6

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |......|.|++|||| |++|.-+|..+...|.  +|.++..+
T Consensus        13 ~~~l~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~   52 (122)
T d1h6va2          13 LFSLPYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRS   52 (122)
T ss_dssp             HTTCSSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred             HhCcccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEec
Confidence            4444556679999998 9999999999999897  99999765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.014  Score=45.03  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      ..++|+|||.+.-||.+++..|.++|.  .|...+.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~   69 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHR   69 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECS
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--ccccccc
Confidence            456999999988899999999999887  7777764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.22  E-value=0.0079  Score=43.11  Aligned_cols=38  Identities=16%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .....|.|++|+|| |++|.-+|..|...|.  +|.+++..
T Consensus        16 ~~~~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~   53 (115)
T d1lvla2          16 APKALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEAR   53 (115)
T ss_dssp             CCSSCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             CcccCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeee
Confidence            33345679999998 9999999999999998  99999875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.21  E-value=0.013  Score=42.63  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..+|+|||| |++|.-+|..|...|.  +|++++..
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~   62 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDIL   62 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEec
Confidence            3469999998 9999999999999998  99999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.20  E-value=0.031  Score=42.64  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..||.|+|+ |..+.++++.|.+.|. .+|.+++++.
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccH
Confidence            358999998 9999999999998885 5899998873

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.20  E-value=0.0068  Score=47.18  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |||+|||| |++|..+|..|...+.-.+|++++..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            79999998 99999999999775444489999865

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.18  E-value=0.0018  Score=55.10  Aligned_cols=117  Identities=17%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             ccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHH----cCCCc-----cEEEEEeCCCc-hhHHHHHhccc--CCCcEE
Q 025206           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMK----LNPLV-----SRLALYDIANT-PGVAADVGHIN--TRSEVA   82 (256)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~----~~~~~-----~eV~LiD~~~~-~g~~~dl~~~~--~~~~v~   82 (256)
                      .+.+-+...+.....||+|.|| |.-|..++..|+    ..|+-     +.++++|.+-+ ...-.|+....  +-....
T Consensus        12 linAlki~gk~l~d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~   90 (308)
T d1o0sa1          12 LLTCTRVTKKLVSQEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMP   90 (308)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSC
T ss_pred             HHHHHHHhCCCHHHcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcc
Confidence            3333333334445569999998 999999887654    34542     35999998721 10001232211  110110


Q ss_pred             EEecCCccccccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           83 GYMGNDQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        83 ~~~~t~d~~eal~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                         ...++.+.++  .-+++|-+.+.+   |-     +      .+++++.|.+.+++.+|+-.|||..
T Consensus        91 ---~~~~l~~~i~~~kptvliG~s~~~---g~-----f------t~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1          91 ---ETTSILEVIRAARPGALIGASTVR---GA-----F------NEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             ---CCCCHHHHHHHHCCSEEEECSSCT---TC-----S------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             ---cCCcHHHHHhccccccEEeccccc---CC-----C------CHHHHHHHHhhCCCcEEEEccCCCC
Confidence               1123334443  235666554443   21     1      3566778888999999999999975

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.18  E-value=0.0098  Score=50.13  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +++||+|||| |.-|.+.|..|+..+...+|++++..
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            3468999998 99999999999887766699999876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.043  Score=41.82  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +.++|.|+|+ |-.+.++++.|...|.  +|.+++++..  +..+..+.+..   .++..  +.+ .....++|+||.|-
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~-~~~~~~~dliIN~T   87 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTG---SIQAL--SMD-ELEGHEFDLIINAT   87 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSG-GGTTCCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhcc---ccccc--ccc-cccccccceeeccc
Confidence            3458999998 9999999999999887  7999988732  22222222211   23322  111 12346899999984

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.17  E-value=0.022  Score=43.16  Aligned_cols=65  Identities=25%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHcCCCccEEEEEeCCCc--hhHHHHHhcccCCCcEEEEecCCccccccC-CCCEEEEec
Q 025206           29 RKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~LiD~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~eal~-~aDvVIi~a  104 (256)
                      +||+|||+ |.+|+. ....+...+.+ +++++|.+..  ...+.++..   +   ..   .+++++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~---~---~~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRV---S---AT---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTC---C---CC---CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccc---c---cc---cccHHHhcccccceecccc
Confidence            69999998 999975 45556554432 8889998742  222222211   1   11   124445554 789999974

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.17  E-value=0.041  Score=44.52  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCCC-chhHHHHHhcccCCCcEEEEe-cCC---c-------ccc
Q 025206           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GND---Q-------LGQ   92 (256)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~~-~~g~~~dl~~~~~~~~v~~~~-~t~---d-------~~e   92 (256)
                      +.+++.|+||+|  -+|..+|..|+..|.  +|++.|.++ ....+.++......  ...+. .-+   +       ..+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGG--ALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCc--ccccccccCCHHHHHHHHHHHHH
Confidence            345788999976  599999999999998  899999873 22222222221111  11111 011   1       122


Q ss_pred             ccCCCCEEEEecCCCCCC-------CCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           93 ALEDSDVVIIPAGVPRKP-------GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        93 al~~aDvVIi~ag~~~~~-------g~~r~d---~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      .+...|++|..||.....       ..+..+   .+..|+.....+++.....- ..+.+|+++.
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS  147 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEee
Confidence            345789999999864211       122222   34455554555555444332 3466777763

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.15  E-value=0.011  Score=47.30  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..+.||+|||| |..|.+.|..|.++|+  ++.++|..
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeec
Confidence            35679999998 9999999999999999  99999976

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.043  Score=44.92  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             ceEE-EEcCCCCcHHHHHHHHHcC-CCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecC-Cc----------cccc
Q 025206           29 RKVA-VLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (256)
Q Consensus        29 ~KI~-IIGaaG~VG~~la~~l~~~-~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~ea   93 (256)
                      ++|+ |+||++-+|..+|..|+.. |.  .|++.+++.  ++..+.+|......  +..+..+ ++          +.+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCc--EEEEEEecCCHHHHHHHHHHHHHh
Confidence            4674 7799999999999999864 66  899999983  33334445432211  2212111 11          2233


Q ss_pred             cCCCCEEEEecCCCCCCC-C--CHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 025206           94 LEDSDVVIIPAGVPRKPG-M--TRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (256)
Q Consensus        94 l~~aDvVIi~ag~~~~~g-~--~r~---d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~tN  146 (256)
                      +..-|++|..||...... .  +..   ..+..|+.-...+.+.+-+.- +.+.+|+++.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            467999999999743221 1  121   235556555555555554443 4577887774

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0092  Score=48.14  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +..||+|||| |.-|.+.|+.|.+.|+  +|.+++..
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCC
Confidence            4568999998 9999999999999999  99999765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.087  Score=39.77  Aligned_cols=34  Identities=32%  Similarity=0.413  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .+|.|+|+ |.+|...+..+...|. ..|+.+|.++
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCH
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCH
Confidence            48999998 9999999888888874 5799999874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.04  E-value=0.007  Score=46.95  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +||+|||| |..|.+.|..|.+.|+ .+|++++..
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~   33 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGI-TDLLILEAT   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECC
Confidence            48999998 9999999999999995 269999875

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.019  Score=44.27  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             CCCceEEEEcCCCCcHHH-HHHHHHcCCCccEEE-EEeCCCchhHHHHHhcccCCCcEEEEecCCccccccC--CCCEEE
Q 025206           26 VPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVI  101 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~-LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~--~aDvVI  101 (256)
                      |+++||+|||+ |.+|.. ....+...+..-+|+ ++|.++...  ..+.+.. . ....+   +++++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~-~-~~~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMV-G-NPAVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHH-S-SCEEE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhccc-c-cccee---eeeeccccccccceee
Confidence            46789999998 999986 466666543322555 678874221  1222111 1 11222   25556664  689999


Q ss_pred             Eec
Q 025206          102 IPA  104 (256)
Q Consensus       102 i~a  104 (256)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            873

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.023  Score=44.85  Aligned_cols=74  Identities=19%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEEEE---------------------ec
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGY---------------------MG   86 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~---------------------~~   86 (256)
                      +||.|||. |.-|..++..+...++ .-+.+.+|.+.     .+|.+.....++.+-                     ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999998 9999999998887765 23778888762     122222111111100                     00


Q ss_pred             CCccccccCCCCEEEEecCCCC
Q 025206           87 NDQLGQALEDSDVVIIPAGVPR  108 (256)
Q Consensus        87 t~d~~eal~~aDvVIi~ag~~~  108 (256)
                      ...+.+.++++|+||++||...
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGG   96 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGG   96 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTS
T ss_pred             HHHHHHHhcCCCeEEEEEecCC
Confidence            1135567889999999988653

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.077  Score=43.82  Aligned_cols=115  Identities=15%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             ceEE-EEcCCCCcHHHHHHHHHcCCCccEEEEEeCC----CchhHHHHHh-ccc-CCCcEEEEecC-Ccc---c----cc
Q 025206           29 RKVA-VLGAAGGIGQPLALLMKLNPLVSRLALYDIA----NTPGVAADVG-HIN-TRSEVAGYMGN-DQL---G----QA   93 (256)
Q Consensus        29 ~KI~-IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~----~~~g~~~dl~-~~~-~~~~v~~~~~t-~d~---~----ea   93 (256)
                      +||+ |+||++-+|..+|..|++.|.  .+++++..    +..+...+.. ... ...++..+..+ ++.   .    +.
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            4776 559999999999999999986  55555432    1111111111 111 11223322211 111   0    11


Q ss_pred             c-CCCCEEEEecCCCCCCC---CC---HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 025206           94 L-EDSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (256)
Q Consensus        94 l-~~aDvVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~i~~~~p~~~iiv~tN  146 (256)
                      . ...|++|..+|......   .+   -...++.|    +...+.+.+.|.+.. .+.||++|.
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS  142 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEec
Confidence            1 46899999998654321   11   22234455    346677778787765 456666653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.99  E-value=0.019  Score=44.25  Aligned_cols=72  Identities=18%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCC---cEEEEecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS---EVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~---~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +.++|.|+|+ |.++.++++.|...+   +|.+++++.  ++..+.++.......   .+..    .++...+.++|+||
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dliI   88 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDIII   88 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhhc
Confidence            4469999998 989999988886544   899998873  333344444322111   1221    13455678999999


Q ss_pred             EecCC
Q 025206          102 IPAGV  106 (256)
Q Consensus       102 i~ag~  106 (256)
                      .+-..
T Consensus        89 n~tp~   93 (177)
T d1nvta1          89 NATPI   93 (177)
T ss_dssp             ECSCT
T ss_pred             cCCcc
Confidence            98544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.93  E-value=0.0092  Score=44.72  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +||+|||| |++|..+|..|...+.-.+|+++|.+
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            59999998 99999999999877643499999876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.015  Score=42.30  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=32.6

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ....-|.||+|||+ |++|.-+|..|...|.  +|.+++..
T Consensus        17 ~l~~~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~   54 (125)
T d3grsa2          17 QLEELPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRH   54 (125)
T ss_dssp             TCCSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             ChhhcCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeec
Confidence            33334679999998 9999999999999998  99999876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.91  E-value=0.013  Score=43.16  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++.||+|||| |++|.-+|..|...|.  +|.+++..
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~   67 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTA   67 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeec
Confidence            3569999998 9999999999999998  99999976

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.91  E-value=0.026  Score=46.35  Aligned_cols=116  Identities=23%  Similarity=0.258  Sum_probs=75.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      ...||++||-     .++...+..++.  ++..+|.++..+   |+.             ....++.+..||+||+|+  
T Consensus       121 ~g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g---d~p-------------~~~~~~lLp~aD~viiTG--  175 (251)
T d2h1qa1         121 KGKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG---DYP-------------LPASEFILPECDYVYITC--  175 (251)
T ss_dssp             TTSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT---CEE-------------GGGHHHHGGGCSEEEEET--
T ss_pred             CCCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC---CCC-------------chHHHHhhhcCCEEEEEe--
Confidence            3469999987     366777777776  999999874221   111             113356889999999996  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEEeechHHHHHHHHH
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~t~lds~R~~~~la  186 (256)
                                     ..++..-.+.|-+.++++..+++.-|...|.|   ++++ .|   -+.+=|+-..|..++.+.++
T Consensus       176 ---------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P---~lf~-~G---v~~lag~~v~d~~~~~~~i~  233 (251)
T d2h1qa1         176 ---------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAP---VLFE-HG---LQELSGFMVKDNARAFRIVA  233 (251)
T ss_dssp             ---------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCG---GGGG-TT---CSEEEEEEESCHHHHHHHHT
T ss_pred             ---------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCH---HHHh-cC---CceEeEEEEeCHHHHHHHHH
Confidence                           23344455555566877654555668877666   3443 33   34555566789888888886


Q ss_pred             HHc
Q 025206          187 GKA  189 (256)
Q Consensus       187 ~~l  189 (256)
                      +--
T Consensus       234 ~Gg  236 (251)
T d2h1qa1         234 GAE  236 (251)
T ss_dssp             TSS
T ss_pred             cCC
Confidence            543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.011  Score=39.78  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++|+|+|+ |+.|+.++.....-|+  +++.+|.+
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLD   33 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTT
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCC
Confidence            58999998 9999999999888888  99999976

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.78  E-value=0.045  Score=41.92  Aligned_cols=70  Identities=21%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      +..+|.|+|+ |..+.++++.|.+.+  .+|++++++.  ++..+..+....   .+....  .+ ...+.++|+||.|.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPYG---NIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhcc---ccchhh--hc-cccccccceeeecc
Confidence            4458999998 999999999988755  4999999873  333334443211   233221  12 23578999999995


Q ss_pred             C
Q 025206          105 G  105 (256)
Q Consensus       105 g  105 (256)
                      .
T Consensus        88 p   88 (171)
T d1p77a1          88 S   88 (171)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.77  E-value=0.0074  Score=47.62  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC----ccEEEEEeC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDI   62 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~----~~eV~LiD~   62 (256)
                      |||+|||| |-+|.++|+.|+++|+    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999998 9999999999998874    346777764

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.75  E-value=0.0028  Score=53.65  Aligned_cols=107  Identities=20%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHc----CCC-----ccEEEEEeCCCc-hhHHHHHhccc--CCCcEEEEecCCcccc
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIANT-PGVAADVGHIN--TRSEVAGYMGNDQLGQ   92 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~----~~~-----~~eV~LiD~~~~-~g~~~dl~~~~--~~~~v~~~~~t~d~~e   92 (256)
                      ..+..||+|.|| |.-|..++..|+.    .|+     ...|+++|.+-+ ...-.|+.+..  +.....   ...++.+
T Consensus        22 ~l~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~---~~~~l~~   97 (298)
T d1gq2a1          22 RLSDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHC---EMKNLED   97 (298)
T ss_dssp             CGGGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCC---CCCCHHH
T ss_pred             CHHHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhh---hhhhhHH
Confidence            334459999998 9999998887652    343     237999999721 11111222111  000000   0123334


Q ss_pred             ccC--CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           93 ALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        93 al~--~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      .++  ..+++|-+.+.+   |-           +.+++++.|.+.+++.+|+-.|||..
T Consensus        98 ~i~~vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1          98 IVKDIKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             HHHHHCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             HhhccChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCC
Confidence            443  356666665544   21           13556677888899999999999965

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.75  E-value=0.022  Score=41.01  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.....|.||+|||+ |++|.-+|..+...|.  +|.++...
T Consensus        16 l~l~~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~   54 (119)
T d3lada2          16 LDFQNVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAM   54 (119)
T ss_dssp             TSCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             hCcccCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEee
Confidence            344456789999998 9999999999999998  99999765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.016  Score=44.91  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hh----HHHHHhcccCCCcEEEEe--cCCccccccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG----VAADVGHINTRSEVAGYM--GNDQLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g----~~~dl~~~~~~~~v~~~~--~t~d~~eal~~aDv   99 (256)
                      +..+|.|+|+ |..|.++++.|...+. .+|++++++.. ..    .+.++... ....+....  ...++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            3459999998 9999999999998874 69999998742 11    22222221 122222211  11234456789999


Q ss_pred             EEEecC
Q 025206          100 VIIPAG  105 (256)
Q Consensus       100 VIi~ag  105 (256)
                      ||.+-.
T Consensus        94 iIN~Tp   99 (182)
T d1vi2a1          94 LTNGTK   99 (182)
T ss_dssp             EEECSS
T ss_pred             eccccC
Confidence            999853

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.70  E-value=0.2  Score=39.95  Aligned_cols=115  Identities=16%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH---cCCCccEEEEEeCCCchh-HHHHHhcccCCCcEEEEecC-Cc---ccc-------
Q 025206           28 DRKVAVLGAAGGIGQPLALLMK---LNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGN-DQ---LGQ-------   92 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~---~~~~~~eV~LiD~~~~~g-~~~dl~~~~~~~~v~~~~~t-~d---~~e-------   92 (256)
                      |++|.|+||++-+|..+|..|+   .+|.  .|++.++++... ...++....  .++..+..+ +|   +++       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            3469999999999999998886   4566  899999884221 122332211  123322211 11   111       


Q ss_pred             --ccCCCCEEEEecCCCCCCC----CCH---HHHHHHHH----HHHHHHHHHHHHhC----------CCcEEEEecC
Q 025206           93 --ALEDSDVVIIPAGVPRKPG----MTR---DDLFNINA----GIVKDLCSAIAKYC----------PNAIVNMISN  146 (256)
Q Consensus        93 --al~~aDvVIi~ag~~~~~g----~~r---~d~~~~N~----~i~~~i~~~i~~~~----------p~~~iiv~tN  146 (256)
                        .....|++|..||.....+    .+.   .+.+..|+    ...+.+.+.+.+..          ..+.+|+++.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S  154 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS  154 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence              1235899999998743322    122   22344553    34555666665431          2456666653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.66  E-value=0.029  Score=42.98  Aligned_cols=89  Identities=24%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag~  106 (256)
                      .-++++|+|- |.+|..+|..+...|-  .|..+++++..+... ..|.     .+.    ..++++++.+|++|.+-|.
T Consensus        22 aGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG-----f~v----~~~~~a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          22 SGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG-----FNV----VTLDEIVDKGDFFITCTGN   88 (163)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT-----CEE----CCHHHHTTTCSEEEECCSS
T ss_pred             cCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC-----Ccc----CchhHccccCcEEEEcCCC
Confidence            3458999999 9999999999998887  999999986543311 2221     111    2456899999999998665


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus       107 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      ..-              +-.   +.++.....+++.+++
T Consensus        89 ~~v--------------I~~---~h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          89 VDV--------------IKL---EHLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SSS--------------BCH---HHHTTCCTTCEEEECS
T ss_pred             Ccc--------------ccH---HHHHHhhCCeEEEecc
Confidence            421              011   2233334578888887

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.65  E-value=0.064  Score=43.52  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecC-Cc----------ccccc
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~eal   94 (256)
                      +.+.|+||++-+|..+|..|+..|.  +|++.+...   ++.....+.+...  ++..+..+ ++          ..+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999998  888865542   2222333333221  22222111 11          12234


Q ss_pred             CCCCEEEEecCCC
Q 025206           95 EDSDVVIIPAGVP  107 (256)
Q Consensus        95 ~~aDvVIi~ag~~  107 (256)
                      -.-|++|..||..
T Consensus        83 g~idilinnag~~   95 (259)
T d1ja9a_          83 GGLDFVMSNSGME   95 (259)
T ss_dssp             SCEEEEECCCCCC
T ss_pred             CCCcEEEeccccc
Confidence            5799999999874

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.64  E-value=0.17  Score=40.44  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc-------ccc
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-------QAL   94 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-------eal   94 (256)
                      |+++.|.|+||++-+|..++..|+.+|..-.|++.+++....  .++.+.. ..++..+..+ ++   ++       +.+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   77 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence            345688999999999999999999998533677777763221  1222211 1223333211 11   11       111


Q ss_pred             --CCCCEEEEecCCCCCCC----CCH---HHHHHHH----HHHHHHHHHHHHHh
Q 025206           95 --EDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKY  135 (256)
Q Consensus        95 --~~aDvVIi~ag~~~~~g----~~r---~d~~~~N----~~i~~~i~~~i~~~  135 (256)
                        .+.|++|..||.....+    .+.   ...+..|    +...+.+.+.+++.
T Consensus        78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence              24899999999643211    222   2345555    34456666666654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.036  Score=48.90  Aligned_cols=34  Identities=32%  Similarity=0.538  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..||.|||+ |.+|+.++..|+..|+ ++|.|+|-+
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECC
Confidence            359999998 9999999999999996 689999976

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.026  Score=40.39  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..||+|+|+ |+.|..++......|+  +++.+|.+
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~   43 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRY   43 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESS
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCC
Confidence            359999998 9999999999998898  99999987

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.57  E-value=0.34  Score=35.58  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             CceEEEEcCC---CCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaa---G~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ++.|+||||+   +..|..++..|...|+  +|+.+..+..     ++.-      ...+   .++.+.-...|+|+++.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~G------~~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVLG------RKCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EETT------EECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccCC------Cccc---ccccccCccceEEEEEe
Confidence            4589999986   5788999999999998  8988865421     1111      1111   13333334689999884


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-ee-chHHH
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT-LDVVR  180 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~-lds~R  180 (256)
                      .                .+.+.++++++.+.++.++++..+.=.+    -..+..+..| +   +++|= |. .+..|
T Consensus        83 p----------------~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~g-i---~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 K----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAG-L---IIVANRCMMREHER  136 (139)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTT-C---EEEESCCHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHCC-C---EEEcCCcChhhhhh
Confidence            2                3456677777777787765543332222    3445566555 3   67775 63 34444

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.56  E-value=0.19  Score=40.30  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCC--cHHHHHHHHHcCCCccEEEEEeCCCc
Q 025206           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT   65 (256)
Q Consensus        27 ~~~KI~IIGaaG~--VG~~la~~l~~~~~~~eV~LiD~~~~   65 (256)
                      +.+++.|+||+|.  +|..+|..|+.+|.  +|+|.+.++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~   43 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRL   43 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            4568999997664  99999999999998  9999998753

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.0077  Score=46.80  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc----hhHHHHHhcccCCCcEEEEecCCccccccCCCCEE
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvV  100 (256)
                      ..+.++++|||-+.-||.+++.+|.++|-  .|...|.+..    ......+.+.... .+..+. .+.+++.+..||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHVE-DLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEEE-EEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeeccc-cccccc-hhHHhhccccCCEE
Confidence            34556999999977899999999999886  8888887621    1111111221100 111111 12355667789999


Q ss_pred             EEecCCCC
Q 025206          101 IIPAGVPR  108 (256)
Q Consensus       101 Ii~ag~~~  108 (256)
                      |..+|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99988764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.46  E-value=0.012  Score=48.45  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+|+|||| |-+|.++|+.|+.+|. .+|+|+|.+
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~   34 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQG   34 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCC
Confidence            38999998 9999999999999884 279999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.40  E-value=0.0093  Score=48.78  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ||+|||| |-+|.++|..|...|+  +|.++|..
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~   34 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQ   34 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            7999999 9999999999999999  99999976

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.33  E-value=0.012  Score=50.03  Aligned_cols=89  Identities=13%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             hhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHHhcccCCCcEEE
Q 025206            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (256)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl~~~~~~~~v~~   83 (256)
                      |-.++|-|-.+-+-+++... ....++|||+ |..+...+..+...-.+.+|.++|++.  .+..+.++.+...  .+. 
T Consensus       104 lT~~RTaA~sala~~~la~~-~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~--~~~-  178 (320)
T d1omoa_         104 TTSLRTGAAGGIAAKYLARK-NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI--SAS-  178 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC--CEE-
T ss_pred             cccccchhHHHHHHHHhccC-CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCC--ccc-
Confidence            33444544444444455443 3458999998 998887766555433368999999873  3333444443221  122 


Q ss_pred             EecCCccccccCCCCEEEEe
Q 025206           84 YMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        84 ~~~t~d~~eal~~aDvVIi~  103 (256)
                       .   +..+++.+||+|+.+
T Consensus       179 -~---~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         179 -V---QPAEEASRCDVLVTT  194 (320)
T ss_dssp             -E---CCHHHHTSSSEEEEC
T ss_pred             -c---chhhhhccccEEEEe
Confidence             1   235788999999776

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.27  E-value=0.038  Score=44.10  Aligned_cols=70  Identities=16%  Similarity=0.084  Sum_probs=40.3

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHcCCCccEEE-EEeCCCc--hhHHHHHhcccCC-CcEEEEecCCccccccC--CCCE
Q 025206           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANT--PGVAADVGHINTR-SEVAGYMGNDQLGQALE--DSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-la~~l~~~~~~~eV~-LiD~~~~--~g~~~dl~~~~~~-~~v~~~~~t~d~~eal~--~aDv   99 (256)
                      ++.||+|||+ |.+|.. +...+...+.+ +|+ ++|++..  +..+...   ..+ ..+..   .+|+++.++  +.|+
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~---~i~~~~~~~---~~d~~ell~~~~iD~  103 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEY---GVDPRKIYD---YSNFDKIAKDPKIDA  103 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHT---TCCGGGEEC---SSSGGGGGGCTTCCE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhh---ccccccccc---cCchhhhccccccee
Confidence            4579999998 999974 55555544333 555 7898742  2222211   111 12222   235566664  6899


Q ss_pred             EEEec
Q 025206          100 VIIPA  104 (256)
Q Consensus       100 VIi~a  104 (256)
                      |+++.
T Consensus       104 V~I~t  108 (221)
T d1h6da1         104 VYIIL  108 (221)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            99874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.015  Score=47.11  Aligned_cols=36  Identities=25%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +..||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus        29 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            3459999998 9999999999999996 7999999873

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.15  E-value=0.022  Score=41.13  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+|+|||| |++|.-+|..|...|.  +|++++..
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccc--eEEEEecc
Confidence            358999998 9999999999999998  99999876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.12  E-value=0.037  Score=42.98  Aligned_cols=74  Identities=20%  Similarity=0.168  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCCchhHHHHHh-ccc----C-------CCcEEEEecCCcccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVG-HIN----T-------RSEVAGYMGNDQLGQAL   94 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~~~g~~~dl~-~~~----~-------~~~v~~~~~t~d~~eal   94 (256)
                      |.||+|.|- |.+|..++..+.+++-+ ||+.+ |.........-+. +..    .       ...+..   ..++.+.+
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~~~   75 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV---AGTVEDLI   75 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC---CCCHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec---CCchhhhh
Confidence            469999997 99999999999887644 55554 5543211111011 100    0       011111   22455667


Q ss_pred             CCCCEEEEecCC
Q 025206           95 EDSDVVIIPAGV  106 (256)
Q Consensus        95 ~~aDvVIi~ag~  106 (256)
                      .++|+||.|-|.
T Consensus        76 ~~vDiViecTG~   87 (178)
T d1b7go1          76 KTSDIVVDTTPN   87 (178)
T ss_dssp             HHCSEEEECCST
T ss_pred             hcCCEEEECCCC
Confidence            899999999653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.93  E-value=0.022  Score=43.73  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.--|+|||| |.-|.+.|..|+..|+  +|.++|.+
T Consensus         4 ~~yDviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~   37 (297)
T d2bcgg1           4 TDYDVIVLGT-GITECILSGLLSVDGK--KVLHIDKQ   37 (297)
T ss_dssp             CBCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CcCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCC
Confidence            3345899998 9999999999999998  99999986

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.92  E-value=0.024  Score=41.70  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA   58 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~   58 (256)
                      |||+|.|++|.+|+.++..+..+++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            7999999999999999988888887  654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.87  E-value=0.019  Score=46.63  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|+|||| |.+|.++|+.|+++|+  +|+++|..
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAF   35 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            4899998 9999999999999998  99999875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.80  E-value=0.11  Score=41.65  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=29.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..|+||++.+|..++..|+++|.  +|++.|.+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            46899999999999999999998  999999873

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.02  Score=47.73  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |.+|+|||| |..|.++|+.|++.|.  +|.++|.+
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~   33 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKR   33 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECC
Confidence            357999998 9999999999999998  99999986

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.053  Score=43.51  Aligned_cols=44  Identities=20%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHH
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADV   72 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl   72 (256)
                      +.+.+.|+||++.+|..++..|+++|.  .|++.|++.  ++....++
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l   49 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKL   49 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh
Confidence            444667999999999999999999998  999999884  33333444

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.75  E-value=0.015  Score=45.89  Aligned_cols=36  Identities=11%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCc-----cEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~-----~eV~LiD~~   63 (256)
                      +|.||+|||+ |--|.+.|+.|+..|+-     -+|.++|..
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            3579999998 99999999999887741     279999986

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.70  E-value=0.042  Score=39.11  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+|+|+|+ |++|.-+|..|...+.  ++.+++..
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~   54 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRT   54 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeecc
Confidence            469999998 9999999999998887  99999875

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.69  E-value=0.055  Score=43.06  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~   63 (256)
                      .||.|||. |.-|..++..+...++ .-+.+.+|.+
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD   50 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTD   50 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESB
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCC
Confidence            69999998 9999999999888775 3477888876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.62  E-value=0.023  Score=44.84  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +||+|||| |.-|.+.|..|...+.-.+|+++|..
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            59999998 99999999988765322299999976

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.56  E-value=0.095  Score=41.33  Aligned_cols=52  Identities=27%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             hhhhhhhcccccccccCCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      |...++...+..|    .. ..+..+|+|-|. |.||+.++..|.+.|.  .|+..|++.
T Consensus         9 v~~~~~~~~~~~g----~~-~L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1           9 VFEAMKATVAHRG----LG-SLDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             HHHHHHHHHHHTT----CC-CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             HHHHHHHHHHHhC----CC-CCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            3445555544433    21 234569999998 9999999999999997  999999973

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.49  E-value=0.026  Score=40.79  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=33.8

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ++.....|.+++|||+ |++|.-+|..+...|.  +|.++...
T Consensus        18 ~l~l~~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~   57 (123)
T d1dxla2          18 ALALSEIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFA   57 (123)
T ss_dssp             HTTCSSCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             hhCccccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEc
Confidence            4444456789999998 9999999999998897  99999775

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.44  E-value=0.1  Score=39.99  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhc-cc----CCCcEE-----EEecCCccccccCCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-IN----TRSEVA-----GYMGNDQLGQALEDSD   98 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~-~~----~~~~v~-----~~~~t~d~~eal~~aD   98 (256)
                      +||+|.|- |.+|..+...+.+++-+.-|.+.|.........-+.. ..    ......     .+....++.+.+.++|
T Consensus         3 irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            69999998 9999999988887765433444465432111110110 00    000000     0001234556678999


Q ss_pred             EEEEecCCC
Q 025206           99 VVIIPAGVP  107 (256)
Q Consensus        99 vVIi~ag~~  107 (256)
                      +|+.|-|..
T Consensus        82 vViEcTG~f   90 (172)
T d2czca2          82 IIVDATPGG   90 (172)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCCC
Confidence            999997643

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=93.43  E-value=0.16  Score=40.65  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC-----CchhHHHHHhcccCCCcEEEEecC-Cc---c---cccc---
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-----NTPGVAADVGHINTRSEVAGYMGN-DQ---L---GQAL---   94 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~-----~~~g~~~dl~~~~~~~~v~~~~~t-~d---~---~eal---   94 (256)
                      .+.|+||+|.+|..++..|+++|. ..|+|+..+     .+.....++....  .++..+..+ +|   +   .+.+   
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhcccccc
Confidence            688999999999999999999985 358888654     1233334444322  233333211 11   1   1112   


Q ss_pred             CCCCEEEEecCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 025206           95 EDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (256)
Q Consensus        95 ~~aDvVIi~ag~~~~~g---~~r~---d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t  145 (256)
                      -..|.||+++|......   .+..   ..+.-|+.....+.+.+... +.+.++++|
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence            25788999998754322   2222   22445666655566555443 445666665

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.29  E-value=0.043  Score=39.85  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             CCCCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.....|.+++|||+ |++|.-+|..+...|.  +|.+++..
T Consensus        19 ~l~l~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~   58 (125)
T d1ojta2          19 ALALKEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMM   58 (125)
T ss_dssp             HTTCCCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             hhCccccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEee
Confidence            3344455789999998 9999999999998888  99999765

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.28  E-value=0.041  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI-~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ||| .|+||++.+|..+|..|++.|.  +|++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            454 7889999999999999999998  999999873

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.89  E-value=0.063  Score=40.35  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=42.7

Q ss_pred             CceEEEEcC--CCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGa--aG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      ..||+++|-  .+.|..+++..+..-|.  ++++.......   .  ..    ..+..+   .++.++++++|+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~~---~--~~----~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEWQ---D--EE----NTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchhh---c--cc----cceeEE---EechhccccCceeeeeE
Confidence            469999997  45688899888887787  77777543210   0  00    123332   36678999999998763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.79  E-value=0.21  Score=35.75  Aligned_cols=102  Identities=14%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecC-Cc---cc-cccCCCCEEEEec
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-QALEDSDVVIIPA  104 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-eal~~aDvVIi~a  104 (256)
                      +|.|+|. |.+|..++..|.  +.  +++++|.++....  .+....    +..+.++ ++   |. ..+.+|+.+|++.
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSG----ANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTT----CEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcC----ccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            6889998 999999999884  43  6788888753222  222222    1112222 12   21 2378999999974


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCCchHHHHHHHHHhC
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAG  163 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~t-NPvd~~~~i~~~~~~~~~  163 (256)
                      ..         |  ..|+.    ++..+++.+|+..++..+ +|-.      ...++..|
T Consensus        71 ~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~------~~~l~~~G  109 (129)
T d2fy8a1          71 ES---------D--SETIH----CILGIRKIDESVRIIAEAERYEN------IEQLRMAG  109 (129)
T ss_dssp             SS---------H--HHHHH----HHHHHHHHCSSSCEEEECSSGGG------HHHHHHHH
T ss_pred             cc---------h--hhhHH----HHHHHHHHCCCceEEEEEcCHHH------HHHHHHCC
Confidence            21         1  23433    344567788987555555 4554      23455555

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.58  E-value=0.1  Score=39.53  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC--chhHHHHH-hc-c-cCCCcEEEEecCCccccccCCCCEEE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADV-GH-I-NTRSEVAGYMGNDQLGQALEDSDVVI  101 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~--~~g~~~dl-~~-~-~~~~~v~~~~~t~d~~eal~~aDvVI  101 (256)
                      +..||+++|-...|..+++..+..-|.  ++.+.-...  ......+. .+ . .....+..   +.|+.+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            456999999855666777777777787  899886652  11111111 11 0 01123443   347788999999998


Q ss_pred             Eec
Q 025206          102 IPA  104 (256)
Q Consensus       102 i~a  104 (256)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.35  E-value=0.093  Score=40.04  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=28.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..+|+|+|+ |.||...+..+...|. .+|+.+|.++
T Consensus        28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCH
T ss_pred             CCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchh
Confidence            458999998 9999998888887774 4799999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.27  E-value=0.047  Score=45.55  Aligned_cols=32  Identities=22%  Similarity=0.149  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..|+|||| |..|...|..|.+.|+  +++++|..
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~   39 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETA   39 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcC
Confidence            47999998 9999999999999998  89999864

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.18  E-value=0.072  Score=42.00  Aligned_cols=103  Identities=18%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCCCchhHHHHHhcccCCCcEE-------EE--------------ecC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVA-------GY--------------MGN   87 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~~~~g~~~dl~~~~~~~~v~-------~~--------------~~t   87 (256)
                      +|-|||- |.-|..++..+...++ --+++.+|.+.   +  +|.......++.       +.              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~--~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---Q--ALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---H--HHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---H--HHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6778998 8889999999988876 23777777762   1  112111100010       00              001


Q ss_pred             CccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 025206           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (256)
Q Consensus        88 ~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd  149 (256)
                      ..+.+.++++|+||++||.....|   .    --.+++.++++..   ..- .+-++|-|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG---t----GaaPviA~iake~---g~l-~v~ivt~PF~  127 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG---T----GGAPVVASIARKL---GAL-TVGVVTRPFS  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHH---TCE-EEEEEEECCG
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC---c----chHHHHHHHHHHc---CCc-EEEEEecChH
Confidence            245578899999999998764322   1    1256666666654   322 3455666755

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.12  E-value=0.11  Score=40.11  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             CCceEEEEcC-CCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hhH---HHHHhcccCCCcEEEEecCCccccccCCCCE
Q 025206           27 PDRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGa-aG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      +..||+++|= ...|..+++..+..-|.  +|.++-...  . ...   +.++.... ...++.   +++++++++++|+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTL---TEDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEE---ESCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEE---EeChhhccccccE
Confidence            3469999995 13677788888887887  999996542  1 111   12222111 123443   4577899999999


Q ss_pred             EEEec
Q 025206          100 VIIPA  104 (256)
Q Consensus       100 VIi~a  104 (256)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.047  Score=44.57  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |+|||| |..|.+.|..|++.|+  +|+++|..
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEAR   31 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecC
Confidence            789998 9999999999999998  99999865

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.10  E-value=0.054  Score=42.84  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +.+.|+||++.+|..+|..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3677889999999999999999998  999999873

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.09  E-value=0.05  Score=43.07  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      -|+|||| |..|...|..|++.|+  +|+|+|.++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999998  999999763

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.07  E-value=0.8  Score=36.58  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      =..|+||++.+|..+|..|+..|.  +|++.|.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCC
Confidence            345779989999999999999998  99998775

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.82  E-value=0.19  Score=38.08  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .+|.|+|| |.||...+..+...|. ..|+.+|.++
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCH
T ss_pred             CEEEEECC-Cccchhheeccccccc-cccccccccc
Confidence            58999998 9999998888888874 4799999874

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.53  E-value=0.26  Score=36.62  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=41.5

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHcCCCccEEEEEeCCC---chhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        28 ~~KI~IIGaaG~--VG~~la~~l~~~~~~~eV~LiD~~~---~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      ..||+++|-..+  |..+++..+..-|.  +++++=...   ......  ..  ....+..   ++|+.+++++||+|..
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~--~~--~~~~~~~---~~d~~eai~~aDvvy~   73 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEIL--DE--LNYPVKE---VENPFEVINEVDVLYV   73 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHH--TT--CCSCEEE---ESCGGGTGGGCSEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhc--cc--CCCeEEE---EeCHHHHhhcCCeEEE
Confidence            469999998333  88888888887776  655543321   111111  11  1223544   3477899999999887


Q ss_pred             e
Q 025206          103 P  103 (256)
Q Consensus       103 ~  103 (256)
                      +
T Consensus        74 ~   74 (153)
T d1pg5a2          74 T   74 (153)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.16  E-value=0.083  Score=39.16  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=25.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ||+|||| |++|..+|..|.. +.  +|.+++..
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEecc
Confidence            8999998 9999999998864 44  89999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.99  E-value=0.053  Score=43.46  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..|.|||| |..|...|..|++.|+  +|.++|..+
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            46999998 9999999999999998  999999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.98  E-value=0.11  Score=36.77  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHc---CCCccEEEEEeCC
Q 025206           24 ESVPDRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIA   63 (256)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~la~~l~~---~~~~~eV~LiD~~   63 (256)
                      ....|.|++|||| |++|.-+|..+..   .|.  +|.+++..
T Consensus        14 l~~~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~--~Vtli~~~   53 (117)
T d1feca2          14 LDEAPKRALCVGG-GYISIEFAGIFNAYKARGG--QVDLAYRG   53 (117)
T ss_dssp             CSSCCSEEEEECS-SHHHHHHHHHHHHHSCTTC--EEEEEESS
T ss_pred             ccccCCeEEEECC-ChHHHHHHHHhHhhccccc--ccceeccc
Confidence            3334679999998 9999999876543   354  99999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.77  E-value=0.15  Score=38.26  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=45.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccc-cccCCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLG-QALEDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~-eal~~aDvVIi~a  104 (256)
                      +..+|.|+|+ |.+|...+..+...|.  +|+.+|.++. ...+.++-   .. .+-.+....++. ......|+|+.+.
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~-~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---AD-HYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CS-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---Cc-EEeeccchHHHHHhhhcccceEEEEe
Confidence            3458999998 9999998888877887  8999998743 22333332   11 111111111222 3345789999987


Q ss_pred             CCC
Q 025206          105 GVP  107 (256)
Q Consensus       105 g~~  107 (256)
                      +.+
T Consensus       100 ~~~  102 (168)
T d1piwa2         100 SSL  102 (168)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.76  E-value=0.13  Score=36.44  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCC-ccEEEEEeCC
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA   63 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~-~~eV~LiD~~   63 (256)
                      ...+.+|+|||| |++|.-+|..+...+. ..+|.+++..
T Consensus        17 ~~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          17 PEPPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             SSCCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             hhcCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            334679999998 9999998876543222 2389999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.72  E-value=0.56  Score=35.42  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCC-cccc-----ccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGND-QLGQ-----ALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~-d~~e-----al~~aDv   99 (256)
                      +..+|+|+|+ |.||...+..+...|. ..|+..|.++. ...+.++-....   +. ..... ..++     .=.++|+
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~~---i~-~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATDC---LN-PRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSEE---EC-GGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCcc---cC-CccchhhhhhhHhhhhcCCCcE
Confidence            3358999998 9999999888887774 47888998742 233344431110   00 00000 1111     1257999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVN  149 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-~~iiv~tNPvd  149 (256)
                      ||.+.|.+               ..   +-..++-..|. +.++++..|.+
T Consensus       102 vie~~G~~---------------~~---~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         102 SLDCAGTA---------------QT---LKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             EEESSCCH---------------HH---HHHHHHTBCTTTCEEEECCCSSS
T ss_pred             EEEecccc---------------hH---HHHHHHHhhcCCeEEEecCCCCC
Confidence            99998754               11   12222233464 78888887655

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.49  E-value=1.6  Score=31.28  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             CCCceEEEEcCC---CCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           26 VPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        26 ~~~~KI~IIGaa---G~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      .++..|+||||+   +..|..+...|...+ -.+|+.+.....     ++..      +..+.   ++.+.=...|.+++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~G------~~~y~---sl~dlp~~vDlvvi   70 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQG------VKAYK---SVKDIPDEIDLAII   70 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EETT------EECBS---STTSCSSCCSEEEE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccCC------eEeec---chhhcCCCCceEEE
Confidence            366799999997   788888887876554 358888865421     1111      11111   23233346899999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025206          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (256)
Q Consensus       103 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~  144 (256)
                      +..                .+.+.++++++.+.+-.+.++..
T Consensus        71 ~vp----------------~~~~~~~~~~~~~~g~~~~vi~s   96 (129)
T d2csua1          71 VVP----------------KRFVKDTLIQCGEKGVKGVVIIT   96 (129)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHTCCEEEECC
T ss_pred             ecC----------------hHHhHHHHHHHHHcCCCEEEEec
Confidence            842                34456677777777766655433

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.35  E-value=0.21  Score=37.66  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCcccccc-----CCCCEEE
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDVVI  101 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal-----~~aDvVI  101 (256)
                      ..+|.|+|+ |.+|...+..+...|. ..|+..|.++. ...+.++--   . .+- ...+.++.+.+     .+.|+||
T Consensus        29 g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga---~-~~i-~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          29 ASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA---T-HVI-NSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC---S-EEE-ETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC---e-EEE-eCCCcCHHHHHHHHcCCCCcEEE
Confidence            458999998 9999999888877775 36677787632 222333321   1 111 01122333322     2489999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       102 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      .+.|.+               ..+.+..+   -..|.+.+++++.|
T Consensus       102 d~~G~~---------------~~~~~~~~---~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         102 ESTGSP---------------EILKQGVD---ALGILGKIAVVGAP  129 (174)
T ss_dssp             ECSCCH---------------HHHHHHHH---TEEEEEEEEECCCC
T ss_pred             EcCCcH---------------HHHHHHHh---cccCceEEEEEeec
Confidence            998643               11222222   23478888887643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.13  E-value=0.073  Score=38.63  Aligned_cols=88  Identities=15%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCcccccc-CCCCEEEEec
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal-~~aDvVIi~a  104 (256)
                      ++.+|+|+|| |..|..++..+....-+.-+.++|.++. .|..  +.      .+.++. ..++++.. +..++++++.
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~--I~------Gi~V~~-~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP--VR------GGVIEH-VDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE--ET------TEEEEE-GGGHHHHSTTTCCEEEECS
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE--EC------CEEEec-HHHHHHHHhhcccEEEEeC
Confidence            3458999998 9999999876654443455777888742 2210  11      133332 23444433 3456666653


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 025206          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI  140 (256)
Q Consensus       105 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~  140 (256)
                        |              ....+++++.+.+++-.++
T Consensus        72 --~--------------~~~~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          72 --P--------------REAAQKAADLLVAAGIKGI   91 (126)
T ss_dssp             --C--------------HHHHHHHHHHHHHHTCCEE
T ss_pred             --C--------------HHHHHHHHHHHHHcCCCEE
Confidence              2              1234667778888775543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.07  Score=40.74  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..+|+|||+ |..|..-|..++..|+  +++++|..
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            458999999 9999999999999998  89999854

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.09  E-value=0.14  Score=40.32  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCc-cEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~-~eV~LiD~~   63 (256)
                      +|-|||- |.-|..++..+...++- -+++.+|.+
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD   36 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTD   36 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESB
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCc
Confidence            6889998 99999999999888752 378888876

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.04  E-value=0.36  Score=36.74  Aligned_cols=74  Identities=14%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEE-eCCCchhHHHHHh-ccc----CC--------CcEEEEecCCccccc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVG-HIN----TR--------SEVAGYMGNDQLGQA   93 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~Li-D~~~~~g~~~dl~-~~~----~~--------~~v~~~~~t~d~~ea   93 (256)
                      |.||+|-|- |.+|..+...+..++.+ ||+.+ |.........-+. +..    ..        ..+..   ..++.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v---~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV---AGTVDDM   75 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC---CEEHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCccc---CCChhHh
Confidence            469999998 99999999888777644 55544 5543221111111 100    00        00110   1234556


Q ss_pred             cCCCCEEEEecCC
Q 025206           94 LEDSDVVIIPAGV  106 (256)
Q Consensus        94 l~~aDvVIi~ag~  106 (256)
                      +.++|+||.|-|.
T Consensus        76 ~~~vDvViEcTG~   88 (171)
T d1cf2o1          76 LDEADIVIDCTPE   88 (171)
T ss_dssp             HHTCSEEEECCST
T ss_pred             hcCCCEEEEccCC
Confidence            7899999999654

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.94  E-value=0.12  Score=38.88  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             CCceEEEEcC-CCCcHHHHHHHHHcCCCccEEEEEeCCC--c-hhHH---HHHhcccCCCcEEEEecCCccccccCCCCE
Q 025206           27 PDRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGVA---ADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGa-aG~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g~~---~dl~~~~~~~~v~~~~~t~d~~eal~~aDv   99 (256)
                      +..||+++|= ...|-.+++..+..-|.  ++++.-...  . ....   .+.... ....+..   ++|++++++++|+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~-~~~~i~~---~~d~~~ai~~aDv   75 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKE-TDGSVSF---TSNLEEALAGADV   75 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHH-HCCEEEE---ESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhh-cCCceEE---EecHHHhhhhhhh
Confidence            3469999994 24577777777777787  888885431  1 1111   111111 1224443   4577899999999


Q ss_pred             EEEec
Q 025206          100 VIIPA  104 (256)
Q Consensus       100 VIi~a  104 (256)
                      |....
T Consensus        76 iyt~~   80 (161)
T d1vlva2          76 VYTDV   80 (161)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            99863

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=89.92  E-value=1.1  Score=32.54  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             CCceEEEEcCC---CCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEe
Q 025206           27 PDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (256)
Q Consensus        27 ~~~KI~IIGaa---G~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~  103 (256)
                      +++.|+||||+   +..|..+...|...|+  .+.++..+....   ++..      ...+   .++.+.=...|+|+++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~---~i~g------~~~~---~~l~~i~~~iD~v~v~   77 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGE---ELFG------EEAV---ASLLDLKEPVDILDVF   77 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTS---EETT------EECB---SSGGGCCSCCSEEEEC
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccc---eeec------eecc---cchhhccCCCceEEEe
Confidence            34589999986   4678888889999998  888886642110   0111      1111   1333333467999998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCchHHHHHHHHHhCCCCCCcEEEE-ee-chHHHH
Q 025206          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT-LDVVRA  181 (256)
Q Consensus       104 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i~~~~~~~~~~~~~~kviG~-t~-lds~R~  181 (256)
                      ..                .+.+.++++++.+.+..++++...--.+    =..+..++.| +   ++|+= |. ++..|+
T Consensus        78 ~p----------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~----e~~~~a~~~G-i---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          78 RP----------------PSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEAG-I---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             SC----------------HHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHTT-C---CEEESCCHHHHHHHH
T ss_pred             cc----------------HHHHHHHHHHHHhhCCCeEEEecCccCH----HHHHHHHHcC-C---EEEcCCccHHHHHHh
Confidence            42                3344556666666677766543332222    2345566666 4   56664 63 444443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.76  E-value=0.11  Score=42.71  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-----cCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMK-----LNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~-----~~~~~~eV~LiD~~   63 (256)
                      .-|+|||| |-+|.++|..|+     ..|+  +|+++|..
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~   44 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKR   44 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCC
Confidence            35899999 999999999996     4688  99999976

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.63  E-value=0.12  Score=41.84  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             cccccCCCCCCC--CceEEEEcCCCCcHHHHHHHHHc-CCCccEEEEEeCC
Q 025206           16 AGARGYSSESVP--DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIA   63 (256)
Q Consensus        16 ~~~~~~~~~~~~--~~KI~IIGaaG~VG~~la~~l~~-~~~~~eV~LiD~~   63 (256)
                      .-.|+|..+.++  ..-|+|||| |..|...|..|++ .|+  +|+++|..
T Consensus        19 ~~~~~~~~~~~~~~e~DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~   66 (278)
T d1rp0a1          19 EMTRRYMTDMITYAETDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQS   66 (278)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESS
T ss_pred             HHHHhhhcccccccCCCEEEECC-CHHHHHHHHHHHHccCC--eEEEEecC
Confidence            344566666653  235999998 9999999999987 488  99999976

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.48  E-value=0.4  Score=36.62  Aligned_cols=71  Identities=11%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCCC--c-hhH---HHHHhcccCCCcEEEEecCCccccccCCCC
Q 025206           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN--T-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (256)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~~--~-~g~---~~dl~~~~~~~~v~~~~~t~d~~eal~~aD   98 (256)
                      +..||+++|= |  .|..+++..+..-|.  +|+++-...  . ...   +.+.... ....+..   +.+++++++++|
T Consensus         4 ~~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aD   76 (183)
T d1duvg2           4 NEMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGAD   76 (183)
T ss_dssp             GGCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCS
T ss_pred             CCCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCC
Confidence            4569999995 5  466777777766687  999986542  1 111   1111111 1223443   347788999999


Q ss_pred             EEEEec
Q 025206           99 VVIIPA  104 (256)
Q Consensus        99 vVIi~a  104 (256)
                      +|....
T Consensus        77 vvyt~~   82 (183)
T d1duvg2          77 FIYTDV   82 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            998863

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.15  Score=39.47  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      -|+|||| |..|.+.|..+++.|+  +|.++|..+
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899998 9999999999999998  999999764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.32  E-value=1  Score=33.87  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..|+|+|+ |-+|...+..+...|. .+|+.+|.++
T Consensus        31 ~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCG
T ss_pred             CEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcH
Confidence            47999998 9999999888888874 4899999984

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.29  E-value=0.1  Score=39.95  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..+|+|||| |..|...|..++..|+  +++++|..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            358999998 9999999999999998  88998854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.23  E-value=0.57  Score=35.28  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +..+|.|+|+ |.+|...+..+...|. .+|+..|.++
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCG
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChH
Confidence            3458999998 9999998888887774 4899999974

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.16  E-value=0.15  Score=38.44  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             CCCceEEEEcCCCCcHHHHH-HHHHcCCCccEEEEE-eCC
Q 025206           26 VPDRKVAVLGAAGGIGQPLA-LLMKLNPLVSRLALY-DIA   63 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la-~~l~~~~~~~eV~Li-D~~   63 (256)
                      .+++||+|||+ |.+|..+. ..|...+.+ |++++ |++
T Consensus         2 ~kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~   39 (157)
T d1nvmb1           2 NQKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGID   39 (157)
T ss_dssp             CSCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSC
T ss_pred             CCCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecc
Confidence            35689999996 99998654 455445544 66555 765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.71  E-value=0.14  Score=38.11  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..+|.|.|+ |.+|...+..+...|.  +|+.+|.++
T Consensus        28 g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCH
Confidence            358999997 9999998888888887  899998863

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.06  E-value=0.17  Score=41.29  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=28.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|+|||+ |..|.+.|..|++.|.  +|+|+|..
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKE   48 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecC
Confidence            5999998 9999999999999998  99999875

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.21  Score=36.29  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHc----CCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKL----NPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~----~~~~~eV~LiD~~   63 (256)
                      ..+|+|||| |++|.-+|..|..    .|.  +|.+++..
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPE   73 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEeccc
Confidence            358999998 9999988887753    455  99999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.79  E-value=0.2  Score=38.73  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      --|+|||+ |..|.+.|..+++.|.  +|.++|..
T Consensus         6 yDviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~   37 (233)
T d1v59a1           6 HDVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKR   37 (233)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEec
Confidence            46899998 9999999999999998  99999975

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.2  Score=37.43  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=27.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      -|+|||| |..|...|..+...|+  ++.++|.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEE
Confidence            4899998 9999999999999998  8999975

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.42  E-value=0.82  Score=36.44  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      .+..+.++|+|-|- |.||+.++..|.+.|-  .|+..|.++
T Consensus        34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~   72 (230)
T d1leha1          34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNK   72 (230)
T ss_dssp             SCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccH
Confidence            34446679999998 9999999999999997  899999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.36  E-value=0.3  Score=36.29  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      ..+|+|||+ |.+|.-+|..|...+.-..|++++.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            358999998 9999999999998887334555543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.25  E-value=3.4  Score=28.77  Aligned_cols=81  Identities=12%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        29 ~KI~IIGaa---G~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      ++|+|||++   +..|..+...|.+.|+  +|+.+..+..     ++.-      +..+   .++.+.=...|+++++..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~-----~i~G------~~~y---~sl~~lp~~~D~vvi~vp   65 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD-----EIEG------LKCY---RSVRELPKDVDVIVFVVP   65 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EETT------EECB---SSGGGSCTTCCEEEECSC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc-----cccC------cccc---ccchhccccceEEEEEeC
Confidence            479999985   5678888999999998  8888864311     0111      2212   133333346799998732


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~i  141 (256)
                                      .+.+.++++++.+.++.+++
T Consensus        66 ----------------~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          66 ----------------PKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCceEE
Confidence                            34455666666677776544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.00  E-value=0.18  Score=38.77  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      =|+|||+ |..|.+.|..+++.|.  +++++|..
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKR   35 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEec
Confidence            4899998 9999999999999998  99999975

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=86.78  E-value=0.92  Score=35.77  Aligned_cols=69  Identities=14%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             CCceEEEEcCCCCc----HHHHHHHHHcC-CCccEEE-EEeCCCch--hHHHHHhcccCCCcEEEEecCCcccccc--CC
Q 025206           27 PDRKVAVLGAAGGI----GQPLALLMKLN-PLVSRLA-LYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQAL--ED   96 (256)
Q Consensus        27 ~~~KI~IIGaaG~V----G~~la~~l~~~-~~~~eV~-LiD~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~eal--~~   96 (256)
                      +++||+|||+ |..    +......+... +.+ +|+ ++|.+...  .....+   ..+ ....+   .++++.+  .+
T Consensus        15 k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~---~~~-~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          15 RPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQL---QLK-HATGF---DSLESFAQYKD   85 (237)
T ss_dssp             CCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHT---TCT-TCEEE---SCHHHHHHCTT
T ss_pred             CCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhc---ccc-cceee---cchhhcccccc
Confidence            6789999998 764    34344445433 322 655 77887322  111111   111 12223   2445555  46


Q ss_pred             CCEEEEec
Q 025206           97 SDVVIIPA  104 (256)
Q Consensus        97 aDvVIi~a  104 (256)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            88888873

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.77  E-value=0.37  Score=36.17  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=43.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCcccccc------CCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal------~~aDvVIi  102 (256)
                      .+|.|.||+|.||...+..+...|.  +++..+.++.  ....+...... .+-.+ .+.++.+.+      ++.|+|+-
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~Ga~-~vi~~-~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLGVE-YVGDS-RSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTCCS-EEEET-TCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccccc-ccccC-CccCHHHHHHHHhCCCCEEEEEe
Confidence            5899999889999999888888887  7777765421  11122222211 11111 123443433      56999999


Q ss_pred             ecC
Q 025206          103 PAG  105 (256)
Q Consensus       103 ~ag  105 (256)
                      +.|
T Consensus       101 ~~g  103 (183)
T d1pqwa_         101 SLA  103 (183)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.75  E-value=0.33  Score=35.55  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEE-EEeC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDI   62 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~-LiD~   62 (256)
                      ||+|+|++|.+|+.++..+...+-+ +++ .+|.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEec
Confidence            7999999999999998877665432 433 3454

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.64  E-value=0.82  Score=34.01  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ...|.|+|+ |.+|...+..+...|. ..|+..|.++
T Consensus        33 g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSH
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchh
Confidence            357999997 9999988887776664 3778888863

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.58  E-value=0.44  Score=35.75  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEecC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~ag  105 (256)
                      +..+|.|.||+|.||+..+..+...|.  +|+..+.++. ...+.++   ... .+-.+....+....-+++|+|+-+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga~-~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GAE-EAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TCS-EEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---ccc-eeeehhhhhhhhhccccccccccccc
Confidence            345899999889999999888888897  8888876532 1222222   111 11111100011123478999998765


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 025206          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (256)
Q Consensus       106 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP  147 (256)
                      ..          +       .   ..++-..|.+.++.+.+|
T Consensus       101 ~~----------~-------~---~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         101 KE----------V-------E---ESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             TT----------H-------H---HHHTTEEEEEEEEEC---
T ss_pred             hh----------H-------H---HHHHHHhcCCcEEEEeCC
Confidence            11          1       1   123333578888888654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=86.24  E-value=0.28  Score=36.67  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +|++|+|+|++|+||.....-+.+..--=+|..+--+
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            3679999999999999988777665421167766544

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=0.27  Score=39.84  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             HHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHH
Q 025206          180 RAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRT  234 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v  234 (256)
                      -+.+.||+.+|++.++|+..+.| ||     +.|+..++..+   ++-+++|.+..
T Consensus         5 ~~~~~la~~lg~~~~~v~~~~~GlNH-----~~w~~~~~~~G---~D~~p~l~~~~   52 (253)
T d1up7a2           5 NFIREIAEMFSARLEDVFLKYYGLNH-----LSFIEKVFVKG---EDVTEKVFENL   52 (253)
T ss_dssp             HHHHHHHHHTTCCGGGEEEEEEEETT-----EEEEEEEEETT---EECHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHcEEEEEEECC-----hhheEeeEECC---EechHHHHHHH
Confidence            46788999999999999999999 99     78999888742   23334454444

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.02  E-value=0.5  Score=38.17  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CCceEEEEcCCC--CcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      +.+++.|+||+|  -+|..+|..|++.|.  +|++.|.+
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCc
Confidence            456899999966  699999999999998  99998875

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.92  E-value=0.29  Score=37.84  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..|.|||+ |..|...|..++..|.  +|.|+|...
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36899998 9999999999999998  999999764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.84  E-value=0.76  Score=33.51  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=26.6

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVL--GAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~II--GaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .+.|+  |+ |++|..+|..|+..|.  +|.++...
T Consensus        41 ~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~   73 (156)
T d1djqa2          41 RVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGV   73 (156)
T ss_dssp             EEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             ceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecC
Confidence            44444  87 9999999999999998  99999876

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.77  E-value=0.26  Score=42.14  Aligned_cols=31  Identities=35%  Similarity=0.502  Sum_probs=28.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc------CCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKL------NPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~------~~~~~eV~LiD~~   63 (256)
                      =|+|||| |--|++.|+.|++      +|+  +|+|+|..
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~   70 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKA   70 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCC
Confidence            6999999 9999999999986      788  99999976

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.59  E-value=0.26  Score=41.05  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=27.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      -|.|||+ |+-|+.+|..|++.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3789998 9999999999999998  9999975

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.49  E-value=0.36  Score=39.51  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             eechHHHHHHHHHHHcCCCC-CceeEEEEe-CCCCCceeecccccc
Q 025206          174 TTLDVVRAKTFYAGKANVNV-AEVNVPVVG-GHAGITILPLFSQAT  217 (256)
Q Consensus       174 t~lds~R~~~~la~~l~v~~-~~v~~~v~G-~Hg~~~~vp~~s~~~  217 (256)
                      |+... -+++.+|+.||++| ++|+..+.| ||     +.|+..+.
T Consensus         2 C~~p~-~~~~~ia~~Lgv~~~~ev~~~~~GLNH-----~~w~~~v~   41 (276)
T d1u8xx2           2 CDMPV-GIEDRMAQILGLSSRKEMKVRYYGLNH-----FGWWTSIQ   41 (276)
T ss_dssp             CSHHH-HHHHHHHHHHTCSCGGGEEEEEEEETT-----EEEEEEEE
T ss_pred             CCchH-HHHHHHHHHcCCCchhceEEEEEeecc-----HHHHhhee
Confidence            44333 56788999999987 579999999 99     78888886

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.32  E-value=0.26  Score=38.41  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|+|||| |..|.+.|..+++.|+  +|.++|..
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFV   35 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            3889998 9999999999999999  99999953

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.24  E-value=0.27  Score=36.89  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEe
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD   61 (256)
                      .||+|||+ |++|..+|..|...+.-.+|+++.
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEe
Confidence            36999998 999999999998877633566554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.98  E-value=0.31  Score=40.02  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=28.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      -|+|||+ |..|.+.|..|+++|+  +|+|++..
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGA--KVILLEKE   55 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            5999998 9999999999999998  99999875

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.74  E-value=0.27  Score=40.18  Aligned_cols=47  Identities=13%  Similarity=0.072  Sum_probs=35.1

Q ss_pred             HHHHHHHHHcCCCCCceeEEEEe-CCCCCceeecccccccCCCCCHHHHHHHHHHH
Q 025206          180 RAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKANLADEDIKALTKRT  234 (256)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G-~Hg~~~~vp~~s~~~~~~~~~~~~~~~i~~~v  234 (256)
                      -+.+.+|+.||+++++|+..+.| ||     +.|+..++..+   ++-+++|.+.+
T Consensus         5 ~~~~~la~~Lg~~~~~i~~~~~GlNH-----~~W~~~~~~~G---~D~~p~l~e~~   52 (270)
T d1s6ya2           5 GMRMGVAKLLGVDADRVHIDFAGLNH-----MVFGLHVYLDG---VEVTEKVIDLV   52 (270)
T ss_dssp             HHHHHHHHHHTSCGGGEEEEEEEETT-----EEEEEEEEETT---EECHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHcEEEEEeeCC-----HhHeeeeEECC---ccccHHHHHHH
Confidence            35678999999999999999999 99     77888887642   22234444444

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.61  E-value=0.49  Score=37.65  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~   65 (256)
                      +.|||+ |..|...|..+++.|.  +|.|+|..+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~~   35 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSRL   35 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSST
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCCC
Confidence            789998 9999999999999998  9999997643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.36  Score=37.57  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      ..++|||| |+.|..+|..|.+.+.-.+|++++..
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            35889998 99999999999888876689999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.13  E-value=0.4  Score=37.29  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      -|+|||+ |..|.+.|..+++.|+  +|.++|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899998 9999999999999998  999999753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=1  Score=33.40  Aligned_cols=35  Identities=23%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      ..+|.|+||+|.+|...+..+...|.  +|+..|.++
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~   63 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTA   63 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSH
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC--eEeecccch
Confidence            35899999988899999888888887  899998873

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.38  Score=36.88  Aligned_cols=31  Identities=23%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      |+|||+ |..|.+.|..++..|.  +|+++|..+
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789998 9999999999999998  999999764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.80  E-value=0.38  Score=39.63  Aligned_cols=30  Identities=30%  Similarity=0.507  Sum_probs=27.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      -++|||+ |.-|..+|..|++.|+  +|.+++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            4899998 9999999999999998  9999974

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=1.1  Score=36.68  Aligned_cols=109  Identities=18%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHH---HHHhccc-CCCcEEEEecCC--ccccccCCC
Q 025206           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVA---ADVGHIN-TRSEVAGYMGND--QLGQALEDS   97 (256)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~---~dl~~~~-~~~~v~~~~~t~--d~~eal~~a   97 (256)
                      ..++.+|.|+|+ |. | .++..+....-..+|.++|+++. ...+   .+..+.. ...+++++.++.  -+.+.-+.-
T Consensus        76 ~~~pk~vLiiGg-G~-G-~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y  152 (285)
T d2o07a1          76 HPNPRKVLIIGG-GD-G-GVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF  152 (285)
T ss_dssp             SSSCCEEEEEEC-TT-S-HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CcCcCeEEEeCC-Cc-h-HHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence            335679999998 63 2 44555555444569999999841 1111   1111111 134677665321  111222346


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t  145 (256)
                      |+||+-.-.|..+.   ..+      ..++..+.+++. .|+++++.=+
T Consensus       153 DvIi~D~~~p~~~~---~~L------~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         153 DVIITDSSDPMGPA---ESL------FKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEEECC--------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcc---ccc------ccHHHHHHHHHhcCCCCeEEEec
Confidence            99999754332111   111      234455555544 4888775443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.09  E-value=0.64  Score=35.36  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      -|.|||+ |..|.+.|..++..|.  ++++++...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4889998 9999999999999998  999998764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.05  E-value=1  Score=34.54  Aligned_cols=65  Identities=25%  Similarity=0.314  Sum_probs=42.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEEec
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi~a  104 (256)
                      .++|+|||= |.-|.+-|..|...|+  +|++==.........--.+ .    ++.    .+++|+.+.||+|.+..
T Consensus        16 ~k~IaViGY-GsQG~AhAlNLrDSG~--~V~VGLr~gs~s~~~A~~~-G----f~v----~~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH-G----LKV----ADVKTAVAAADVVMILT   80 (182)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT-T----CEE----ECHHHHHHTCSEEEECS
T ss_pred             CCEEEEEee-CcHhHHHHhhhhhcCC--CEEEEcCCCCccHHHHhhh-c----ccc----ccHHHHhhhcCeeeeec
Confidence            469999998 9999999999999998  6554322211111111111 1    222    24578999999999984

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=82.97  E-value=0.94  Score=36.34  Aligned_cols=44  Identities=23%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             CCccccccCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 025206           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (256)
Q Consensus        87 t~d~~eal~~aDvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~~~iiv~t  145 (256)
                      ++|..|++++||+||++...+               +.+.++++.|.++. |+++++..|
T Consensus       132 ~~d~~Eav~~ADiII~~vP~~---------------~~v~~Vi~~I~~~l~~g~Iiid~S  176 (242)
T d2b0ja2         132 TSDDREAVEGADIVITWLPKG---------------NKQPDIIKKFADAIPEGAIVTHAC  176 (242)
T ss_dssp             ESCHHHHHTTCSEEEECCTTC---------------TTHHHHHHHHGGGSCTTCEEEECS
T ss_pred             ECCHHHHHhcCCeEEEeeecH---------------HHHHHHHHHHHhhCCCCcEEEecC
Confidence            346689999999999985322               12455667777777 456655444

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.91  E-value=0.34  Score=37.01  Aligned_cols=31  Identities=32%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      =|+|||+ |.-|.+.|..+++.|+  +|.++|..
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~   35 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKY   35 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            4899998 9999999999999998  99999964

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.72  E-value=0.8  Score=33.73  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +..+|.|+|+ |.+|...+..+...|.  +|+.+|.++
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchh
Confidence            3458999998 9999999988888886  899999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.43  E-value=1.5  Score=32.30  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~   64 (256)
                      +..+|.|+|++|.+|...+..+...|. .+|+..|.++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccch
Confidence            345899999779999988877776664 3899999873

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=82.40  E-value=5.2  Score=31.36  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=39.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCC-----ccEEEEEeCC-CchhHHHHHhcccCCCcEEEEecCCccccccCCCCEEEE
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~-----~~eV~LiD~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~eal~~aDvVIi  102 (256)
                      +||+|||- |.-|.+-|..|...|+     +.-++-+... +....+.  .+..........    +.+|+.+.||+|.+
T Consensus        45 KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~v~----~v~EAv~~ADiVmi  117 (226)
T d1qmga2          45 KQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGTLG----DMWETISGSDLVLL  117 (226)
T ss_dssp             SEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTCEE----EHHHHHHTCSEEEE
T ss_pred             CEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCccc----CHHHHHhhCCEEEE
Confidence            58999998 9999999999998552     1112222222 2222221  111100111111    34679999999999


Q ss_pred             ec
Q 025206          103 PA  104 (256)
Q Consensus       103 ~a  104 (256)
                      ..
T Consensus       118 Ll  119 (226)
T d1qmga2         118 LI  119 (226)
T ss_dssp             CS
T ss_pred             ec
Confidence            84

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=82.16  E-value=0.48  Score=38.74  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        31 I~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |.|||+ |.-|.+.|..++++|.  +|+|++..
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLI   37 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecC
Confidence            899998 9999999999999998  89999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.94  E-value=1.6  Score=32.25  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~   65 (256)
                      ...|.|+|+ |-+|...+..+...+. .+|+..|.++.
T Consensus        29 GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~   64 (176)
T d2jhfa2          29 GSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKD   64 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHH
Confidence            358999998 8899988888887763 48999998853

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.73  Score=34.32  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        28 ~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      |+||+|+|++|+||......+.+.+--=+|+.+--+
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            457999999999999988877766421166666433

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.93  E-value=0.28  Score=36.88  Aligned_cols=36  Identities=22%  Similarity=0.136  Sum_probs=25.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .++||+|||+ |.+|...+..+...+....+.++|..
T Consensus         6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            5679999998 99999887776543322345555543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.88  E-value=2.6  Score=34.92  Aligned_cols=107  Identities=16%  Similarity=0.270  Sum_probs=51.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHHHHH---hccc-CCCcEEEEecCC--ccccccCCCCE
Q 025206           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADV---GHIN-TRSEVAGYMGND--QLGQALEDSDV   99 (256)
Q Consensus        27 ~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~~dl---~~~~-~~~~v~~~~~t~--d~~eal~~aDv   99 (256)
                      ++.||.|||+ |. | .++..++...-..+|.++|+++. ...+...   .+.. ...++++..++.  -+.+.-+.-|+
T Consensus       106 ~pk~VLIiGg-G~-G-~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         106 DPKRVLIIGG-GD-G-GILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SCCEEEEESC-TT-S-HHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCeEEEeCC-Cc-h-HHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            5679999998 63 2 34445555444568999999841 1111111   1111 134666654221  11122234799


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 025206          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (256)
Q Consensus       100 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~t  145 (256)
                      ||+-.-.|..+   ...+      ..+++.+.+++. .|+++++.=+
T Consensus       183 II~D~~dp~~~---~~~L------~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         183 IITDSSDPVGP---AESL------FGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEECCC----------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCc---chhh------hhHHHHHHHHhhcCCCcEEEEec
Confidence            99865433211   1112      234455555544 4888876544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.73  E-value=1.7  Score=35.54  Aligned_cols=110  Identities=21%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCCCc-hhHH---HHHh-cccCCCcEEEEecCC--ccccccC-CC
Q 025206           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVA---ADVG-HINTRSEVAGYMGND--QLGQALE-DS   97 (256)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~~~-~g~~---~dl~-~~~~~~~v~~~~~t~--d~~eal~-~a   97 (256)
                      .++.||.|+|+ |.  ..++..++...-..+|.++|+++. ...+   .... ......+++.+.++.  -+.+.-+ .-
T Consensus        79 ~~pk~VLiiGg-G~--G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          79 PNPKKVLVIGG-GD--GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SCCCEEEEETC-SS--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCcceEEecC-Cc--hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            35679999998 63  334455555544568999999841 1111   1111 111234566654321  1212222 57


Q ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe-cCC
Q 025206           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMI-SNP  147 (256)
Q Consensus        98 DvVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~~~iiv~-tNP  147 (256)
                      |+||+-+-.|..+   ...++      .++..+.+++. .|+++++.= .+|
T Consensus       156 DvIi~D~~dp~~~---~~~L~------t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         156 DAVIVDSSDPIGP---AKELF------EKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEEEECCCCTTSG---GGGGG------SHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cEEEEcCCCCCCc---chhhC------CHHHHHHHHHhcCCCcEEEEecCCc
Confidence            9999865443221   11222      23444444443 488877543 345

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=0.57  Score=41.95  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .||+|+|+ |.+|+.++..|+..|+ ++++|+|-+
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d   58 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGN   58 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCC
Confidence            49999998 9999999999999995 699999976

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.54  E-value=0.52  Score=39.22  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=27.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeC
Q 025206           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (256)
Q Consensus        30 KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~   62 (256)
                      =+.|||+ |.-|..+|..|++.|+  +|++++.
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   38 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGI--PTQIVEM   38 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeC
Confidence            4789998 9999999999999998  9999974

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.46  E-value=0.42  Score=39.25  Aligned_cols=32  Identities=34%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHcCCCccEEEEEeCC
Q 025206           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (256)
Q Consensus        29 ~KI~IIGaaG~VG~~la~~l~~~~~~~eV~LiD~~   63 (256)
                      .-|+|||+ |..|.+.|..+++.|.  +|+|++..
T Consensus        20 ~DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~   51 (317)
T d1qo8a2          20 TQVLVVGA-GSAGFNASLAAKKAGA--NVILVDKA   51 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHTC--CEEEECSS
T ss_pred             cCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            46999998 9999999999999998  99999875