Citrus Sinensis ID: 025209

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSLTN
cEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEEEcccccccccccEEEEcc
cEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccccccccccEEEEEEEEEEEEEEEEEcccccccccccccEEEEEc
miafishtknkpkkrkrKRKRKRLLSRCACGFAVLSVFSVSLQIIVtgfpmakdtgvaehgsysakdytdpppeplfdaveLTKWSFYRALIAEFIATLLFLYVTVLTVIGyksqtdpaknvdgcagVGILGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYytryggganeladgystGVGLAAEIIGTFVLVYTVFsatdpkrsardshvpvsltn
miafishtknkpkkrkrkrkrkrllsrcacgfaVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKsqtdpaknvDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSAtdpkrsardshvpvsltn
MIAFISHTknkpkkrkrkrkrkrLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAtllflyvtvltvIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSLTN
***********************LLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVA****************PLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA******************
**AF********************LSRCACGFAVLSVFSVSLQIIV****************************PLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSLTN
************************LSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATD****************
MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGF****************KDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV*LT*
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSLTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q9SV31286 Probable aquaporin PIP2-5 yes no 0.785 0.702 0.836 9e-95
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.789 0.701 0.810 9e-91
Q6K215288 Probable aquaporin PIP2-2 yes no 0.789 0.701 0.791 1e-90
Q9ATM7289 Aquaporin PIP2-3 OS=Zea m N/A no 0.757 0.671 0.831 1e-90
P43287285 Aquaporin PIP2-2 OS=Arabi no no 0.781 0.701 0.801 2e-89
Q9FF53291 Probable aquaporin PIP2-4 no no 0.789 0.694 0.792 7e-89
P43286287 Aquaporin PIP2-1 OS=Arabi no no 0.789 0.703 0.787 9e-89
Q7XUA6290 Probable aquaporin PIP2-3 no no 0.742 0.655 0.817 1e-88
P30302285 Aquaporin PIP2-3 OS=Arabi no no 0.781 0.701 0.797 4e-88
Q9XF58285 Aquaporin PIP2-5 OS=Zea m N/A no 0.781 0.701 0.774 6e-87
>sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 169/202 (83%), Positives = 181/202 (89%), Gaps = 1/202 (0%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           M K+  V +  S+S KDY DPPPEPLFDA EL KWSFYRALIAEFIATLLFLYVT++TVI
Sbjct: 1   MTKEV-VGDKRSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVI 59

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           GYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV
Sbjct: 60  GYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKV 119

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           +LVRAVMYMVAQCLGAI GV LVKAFQ +Y+TRYGGGAN L+DGYS G G+AAEIIGTFV
Sbjct: 120 TLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFV 179

Query: 231 LVYTVFSATDPKRSARDSHVPV 252
           LVYTVFSATDPKRSARDSHVPV
Sbjct: 180 LVYTVFSATDPKRSARDSHVPV 201
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM7|PIP23_MAIZE Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XUA6|PIP23_ORYSJ Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|P30302|PIP23_ARATH Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF58|PIP25_MAIZE Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
373501939287 plasma membrane intrinsic protein [Malus 0.789 0.703 0.896 1e-100
13486942287 plasma membrane intrinsic protein 2-2 [P 0.789 0.703 0.896 1e-100
300119934285 aquaporin [Fragaria x ananassa] 0.789 0.708 0.891 7e-99
444300798285 aquaporin protein 5 [Camellia sinensis] 0.789 0.708 0.866 8e-98
383479030285 aquaporin PIP2;2 [Quercus petraea] 0.789 0.708 0.876 9e-98
444300796287 aquaporin protein 4 [Camellia sinensis] 0.789 0.703 0.871 3e-97
255557012288 Aquaporin PIP2.2, putative [Ricinus comm 0.789 0.701 0.852 2e-96
224113031285 aquaporin, MIP family, PIP subfamily [Po 0.781 0.701 0.881 2e-96
224097915285 aquaporin, MIP family, PIP subfamily [Po 0.781 0.701 0.881 2e-96
3158476287 aquaporin 2 [Samanea saman] 0.789 0.703 0.861 5e-96
>gi|373501939|gb|AEY75242.1| plasma membrane intrinsic protein [Malus hupehensis] Back     alignment and taxonomy information
 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/202 (89%), Positives = 186/202 (92%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           MAKD  V E GS+SAKDY DPPP PL DA ELTKWSFYRALIAEF+ATLLFLYVTVLTVI
Sbjct: 1   MAKDMEVGERGSFSAKDYQDPPPAPLIDAAELTKWSFYRALIAEFVATLLFLYVTVLTVI 60

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           GYKSQTDPA N D C GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61  GYKSQTDPATNADACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           SLVRAVMYMVAQ LGAI+GV LVKAFQKSYY +YGGGAN L+DGYSTGVGLAAEIIGTFV
Sbjct: 121 SLVRAVMYMVAQSLGAIAGVALVKAFQKSYYIKYGGGANSLSDGYSTGVGLAAEIIGTFV 180

Query: 231 LVYTVFSATDPKRSARDSHVPV 252
           LVYTVFSATDPKRSARDSHVPV
Sbjct: 181 LVYTVFSATDPKRSARDSHVPV 202

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|13486942|dbj|BAB40143.1| plasma membrane intrinsic protein 2-2 [Pyrus communis] Back     alignment and taxonomy information
>gi|300119934|gb|ADJ67992.1| aquaporin [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|444300798|gb|AGD98708.1| aquaporin protein 5 [Camellia sinensis] Back     alignment and taxonomy information
>gi|383479030|gb|AFH36337.1| aquaporin PIP2;2 [Quercus petraea] Back     alignment and taxonomy information
>gi|444300796|gb|AGD98707.1| aquaporin protein 4 [Camellia sinensis] Back     alignment and taxonomy information
>gi|255557012|ref|XP_002519539.1| Aquaporin PIP2.2, putative [Ricinus communis] gi|223541402|gb|EEF42953.1| Aquaporin PIP2.2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224113031|ref|XP_002316367.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118480985|gb|ABK92446.1| unknown [Populus trichocarpa] gi|222865407|gb|EEF02538.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097915|ref|XP_002311092.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118487660|gb|ABK95655.1| unknown [Populus trichocarpa] gi|222850912|gb|EEE88459.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|3158476|gb|AAC17529.1| aquaporin 2 [Samanea saman] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.785 0.702 0.787 1.2e-81
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.777 0.698 0.758 3.4e-77
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.785 0.700 0.743 7.1e-77
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.785 0.690 0.753 1.1e-76
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.777 0.698 0.748 6.3e-76
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.785 0.695 0.712 7.5e-73
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.753 0.694 0.727 2.3e-71
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.757 0.692 0.709 3.3e-70
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.765 0.682 0.642 3e-62
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.761 0.681 0.637 2.1e-61
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 159/202 (78%), Positives = 169/202 (83%)

Query:    51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
             M K+  V +  S+S KDY DPPPEPLFDA EL KWSFYRALIAEFIA            I
Sbjct:     1 MTKEV-VGDKRSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVI 59

Query:   111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
             GYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV
Sbjct:    60 GYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKV 119

Query:   171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
             +LVRAVMYMVAQCLGAI GV LVKAFQ +Y+TRYGGGAN L+DGYS G G+AAEIIGTFV
Sbjct:   120 TLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFV 179

Query:   231 LVYTVFSATDPKRSARDSHVPV 252
             LVYTVFSATDPKRSARDSHVPV
Sbjct:   180 LVYTVFSATDPKRSARDSHVPV 201
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0006833 "water transport" evidence=RCA;IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84RL7PIP21_MAIZENo assigned EC number0.77290.78900.6965N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.76610.77730.6909N/Ano
Q08451PIP1_SOLLCNo assigned EC number0.70050.70700.6328N/Ano
P42767PIP1_ATRCANo assigned EC number0.71780.750.6808N/Ano
Q6K215PIP22_ORYSJNo assigned EC number0.79120.78900.7013yesno
Q9SV31PIP25_ARATHNo assigned EC number0.83660.78510.7027yesno
Q9XF58PIP25_MAIZENo assigned EC number0.77450.78120.7017N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.76580.78510.7003N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.81060.78900.7013N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.83160.75780.6712N/Ano
Q9ATM8PIP22_MAIZENo assigned EC number0.77510.78900.6917N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-65
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-47
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 4e-40
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-25
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-23
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 3e-21
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 5e-17
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-15
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-13
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-08
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 7e-08
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-07
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-06
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-04
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  202 bits (515), Expect = 3e-65
 Identities = 81/171 (47%), Positives = 103/171 (60%), Gaps = 12/171 (7%)

Query: 81  ELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
           EL   SF+RA+IAEF+ATLLF++  V + +G K               G+L +A AFG  
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----------GLLAVALAFGLA 49

Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
           +F LVYCT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAI G  L+K      
Sbjct: 50  LFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG- 108

Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP 251
             R GG AN LA G + G     EII TF LVYTVF+ TD  R+    HV 
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHVA 159

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.97
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.97
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.97
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.97
PTZ00016294 aquaglyceroporin; Provisional 99.96
PLN00026298 aquaporin NIP; Provisional 99.96
PLN00184296 aquaporin NIP1; Provisional 99.96
PLN00167256 aquaporin TIP5; Provisional 99.95
PRK05420231 aquaporin Z; Provisional 99.95
PLN00182283 putative aquaporin NIP4; Provisional 99.95
PLN00166250 aquaporin TIP2; Provisional 99.95
PLN00027252 aquaporin TIP; Provisional 99.95
PLN00183274 putative aquaporin NIP7; Provisional 99.94
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.94
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.93
PLN00182283 putative aquaporin NIP4; Provisional 99.69
PLN00183274 putative aquaporin NIP7; Provisional 99.67
PLN00026298 aquaporin NIP; Provisional 99.66
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.65
PRK05420231 aquaporin Z; Provisional 99.6
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.59
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.59
PLN00184296 aquaporin NIP1; Provisional 99.58
PLN00166250 aquaporin TIP2; Provisional 99.53
PLN00027252 aquaporin TIP; Provisional 99.49
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.47
PTZ00016294 aquaglyceroporin; Provisional 99.47
PLN00167256 aquaporin TIP5; Provisional 99.4
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.37
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.22
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=99.97  E-value=7.6e-32  Score=241.91  Aligned_cols=163  Identities=26%  Similarity=0.437  Sum_probs=144.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q 025209           84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG  163 (256)
Q Consensus        84 ~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla  163 (256)
                      ...+.|++++||+||++++++++++++....+..        ....++.+.++||+++++.+++.+.+||||+|||||++
T Consensus        28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--------~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a   99 (316)
T KOG0224|consen   28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--------TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLA   99 (316)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--------CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHH
Confidence            4568999999999999999999998886654432        33456778899999999999999999999999999999


Q ss_pred             HHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCC--------------ccccCCCCchHHHHHHHHHHHH
Q 025209          164 LFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGG--------------ANELADGYSTGVGLAAEIIGTF  229 (256)
Q Consensus       164 ~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~--------------~~~~~~~~s~~~af~~E~v~Tf  229 (256)
                      +++.|+++|.++++|+++|++||++|++.+|.+|++.++++.++              ++.|++..+..++|+.|+++|.
T Consensus       100 ~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa  179 (316)
T KOG0224|consen  100 MCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTA  179 (316)
T ss_pred             HHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988876554              1346788899999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCcccc
Q 025209          230 VLVYTVFSATDPKRSARDSHVPVSL  254 (256)
Q Consensus       230 iLv~~il~~~d~k~~~~~~~~P~l~  254 (256)
                      +|++++++++|+||..+.+..|+++
T Consensus       180 ~L~~~l~aI~D~rN~~p~g~~p~~i  204 (316)
T KOG0224|consen  180 MLVLCLFAITDKRNPIPTGLHPLVI  204 (316)
T ss_pred             HHHhheeEEecCCCCCCcchhHHHH
Confidence            9999999999999988888888753

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
2b5f_A 303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-71
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-71
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-71
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-71
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-71
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 8e-24
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 7e-21
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 6e-19
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 6e-19
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 7e-19
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-18
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-15
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-14
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 7e-14
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 8e-14
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 7e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 1e-07
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-06
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-06
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-06
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-06
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-06
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 7e-06
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 8e-06
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-05
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 6e-05
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-04
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-04
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 6e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 148/202 (73%), Gaps = 6/202 (2%)
Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
           M+K+           KDY DPPP P FD  EL  WSF+RA IAEFIA            I
Sbjct: 1   MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           G+  +T        C  VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61  GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           SL+RA++YM+AQCLGAI GVGLVKAF K  Y ++GGGAN +A GY+ G  L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPV 252
           LVYTVFSATDPKRSARDSHVP+
Sbjct: 175 LVYTVFSATDPKRSARDSHVPI 196
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 6e-94
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-04
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 1e-77
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-04
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 3e-70
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-04
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-69
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-68
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-04
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-68
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 9e-68
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 9e-68
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 6e-04
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-66
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-64
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-50
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 7e-05
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 3e-32
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-29
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  277 bits (710), Expect = 6e-94
 Identities = 142/202 (70%), Positives = 158/202 (78%), Gaps = 6/202 (2%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           M+K+           KDY DPPP P FD  EL  WSF+RA IAEFIATLLFLY+TV TVI
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           G+  +T        C  VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84  GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
            L+RA++YM+AQCLGAI GVGLVKAF K  Y ++GGGAN +A GY+ G  L AEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197

Query: 231 LVYTVFSATDPKRSARDSHVPV 252
           LVYTVFSATDPKRSARDSHVP+
Sbjct: 198 LVYTVFSATDPKRSARDSHVPI 219
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.97
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.97
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.97
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.97
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.97
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.97
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.97
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.96
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.7
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.69
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.69
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.57
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.56
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.53
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.53
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.52
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.52
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.51
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.49
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.47
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.45
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=2.8e-39  Score=294.63  Aligned_cols=198  Identities=72%  Similarity=1.178  Sum_probs=145.6

Q ss_pred             CCCCccccccCccCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcch
Q 025209           51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGI  130 (256)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~  130 (256)
                      |.+|.|.++|+.++.+||.||+|.+.++.+|+++++++|++++||+||++|+|++++++........      .....++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~------~~~~~g~   97 (304)
T 3cn5_A           24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VCGSVGL   97 (304)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS------TTCSCHH
T ss_pred             HHHHhhccccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccC------CCCCCCc
Confidence            5566543222345679999999999999999999999999999999999999999998775432211      1245678


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccc
Q 025209          131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANE  210 (256)
Q Consensus       131 l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~  210 (256)
                      +.+++++|+++++.+++++++||||+|||||+++++.|+++|.++++||+||++||++|+++++.+++++++..+.+.+.
T Consensus        98 l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~  177 (304)
T 3cn5_A           98 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS  177 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCC
T ss_pred             eeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999887776666666


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 025209          211 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSL  254 (256)
Q Consensus       211 ~~~~~s~~~af~~E~v~TfiLv~~il~~~d~k~~~~~~~~P~l~  254 (256)
                      +.++++..++|+.|+++||+|+++|+.++|++|....++.|.++
T Consensus       178 ~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~la  221 (304)
T 3cn5_A          178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILA  221 (304)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEEC
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccch
Confidence            77889999999999999999999999999977765555444443
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-39
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 7e-32
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-25
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-23
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  134 bits (339), Expect = 3e-39
 Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 3/173 (1%)

Query: 79  AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFG 138
           A E  K  F+RA++AEF+A +LF+++++ + +G+        N    A    + ++ AFG
Sbjct: 2   ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPI--KSNQTTGAVQDNVKVSLAFG 59

Query: 139 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK 198
             I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++     
Sbjct: 60  LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119

Query: 199 SYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP 251
           S       G N LA G ++G GL  EIIGT  LV  V + TD +R       P
Sbjct: 120 SLP-DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGP 171
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.96
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.96
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.6
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.53
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.47
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.35
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.8e-31  Score=232.90  Aligned_cols=155  Identities=34%  Similarity=0.541  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209           85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL  164 (256)
Q Consensus        85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~  164 (256)
                      .++||++++||+||++++|++++++.....           ...+.+.+++++|++++..+++++++||||+|||||+++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~-----------~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~   70 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAP-----------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAF   70 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC------------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------CCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHH
Confidence            578999999999999999999997653321           234567899999999999999999999999999999999


Q ss_pred             HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 025209          165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS  244 (256)
Q Consensus       165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~d~k~~  244 (256)
                      ++.|+++|.+++.|+++|++||++|+++++.++++++... ...+.+.++.+..++++.|++.|++|+++++.+.|+++.
T Consensus        71 ~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~  149 (234)
T d1ymga1          71 LVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGN-LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRN  149 (234)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTT-TTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             HhccCCChhheeeeeehHHHHHHHHHHHHHHHcCcccccc-ccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCcc
Confidence            9999999999999999999999999999999998876542 334556788899999999999999999999999998877


Q ss_pred             CCCCCCc
Q 025209          245 ARDSHVP  251 (256)
Q Consensus       245 ~~~~~~P  251 (256)
                      ......|
T Consensus       150 ~~~~~~~  156 (234)
T d1ymga1         150 GRLGSVA  156 (234)
T ss_dssp             SCCCCHH
T ss_pred             CcCccee
Confidence            6655443
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure