Citrus Sinensis ID: 025227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHHHHHHHHccccccccHHHHcccHHHHHHHcccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEEcccccccHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLCFQSRLREAAADAVKQLlpesadndlgsvctwadhvkfhyhwssalhfidtpdnlctyqynrdckdedgvkgrCVAGAINNYTTQLLSynsassshseyNLTEALLFLSHFigdihqplhvgftsdrggntidvHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWEtcsanntacpdvyaseGIKAACDWAykgvsegsvledeyfnsrLPIVKLRLAQGGVRLAATLNRIFG
Flexible Loop (DISEMBL)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKlrlaqggvrlAATLNRIFG
Low Complexity Region (SEG)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLsynsassshsEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered region (IsUnstruct)
*************************NDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSAS**HSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI**
Disordered Region (DISOPRED)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLS********SEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered Region (DISEMBL)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Disordered Region (DISPRO)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9C9G4	290	Endonuclease 2 OS=Arabido	yes	no	0.976	0.862	0.753	1e-113
F4JJL0	299	Endonuclease 4 OS=Arabido	no	no	0.980	0.839	0.581	1e-84
Q9SXA6	305	Endonuclease 1 OS=Arabido	no	no	0.972	0.816	0.535	6e-76
Q8LDW6	294	Endonuclease 3 OS=Arabido	no	no	0.960	0.836	0.537	2e-75
F4JJL3	296	Endonuclease 5 OS=Arabido	no	no	0.941	0.814	0.532	2e-72
P24021	287	Nuclease S1 OS=Aspergillu	yes	no	0.890	0.794	0.317	4e-19
P24504	270	Nuclease PA3 OS=Penicilli	N/A	no	0.765	0.725	0.32	3e-15
P24289	270	Nuclease P1 OS=Penicilliu	N/A	no	0.765	0.725	0.32	6e-15

>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 219/252 (86%), Gaps = 2/252 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD  C+YQYNR
Sbjct: 41  QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDE G KGRCVAGAI NYTTQLLSY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV 
Sbjct: 100 DCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVS 159

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           + SD+GGNTI+VHWYTRK  LHH+WD+NIIETAE   YNS ++G+VDA+++NITT+WAD 
Sbjct: 160 YASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQ 219

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           VK+WETC+   TACPD+YASEGI+AACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGG
Sbjct: 220 VKRWETCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 279 VRLAATLNRIFG 290

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: 1

>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1

 Score =  312 bits (800), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 183/253 (72%), Gaps = 2/253 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSALHFIDTPDNLCTYQY 62
           +S   E    AVK+LLP+SAD DL SVC+W D +K H+ W  +S LH++DTPD  C Y+Y
Sbjct: 38  ESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLHYVDTPDYRCNYEY 97

Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
            RDC D    + RCV GAI NYT QL+S +  S +   YNLTEAL+FLSHFIGDIHQPLH
Sbjct: 98  CRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALMFLSHFIGDIHQPLH 157

Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
           VGF  D GGNTI V WY RK  LHHVWDN IIE+A + +YN ++  +++A+Q N+T DW+
Sbjct: 158 VGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLMIEALQANLTNDWS 217

Query: 183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
           + V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D+YF SRLPIV+ RLAQ
Sbjct: 218 NDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYFLSRLPIVEKRLAQ 277

Query: 243 GGVRLAATLNRIF 255
           GG+RLAATLNRIF
Sbjct: 278 GGIRLAATLNRIF 290

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 136/254 (53%), Positives = 172/254 (67%), Gaps = 5/254 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
           Q+ L    A  V+ LLP+    DL ++C W D ++  + Y W+S LH+IDTPD  C+Y+Y
Sbjct: 42  QNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTSHLHYIDTPDQACSYEY 101

Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
           +RDC D+ G+K  CV GAI N+T+QL  Y   +S    YN+TEALLFLSHF+GDIHQP+H
Sbjct: 102 SRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSD-RRYNMTEALLFLSHFMGDIHQPMH 160

Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
           VGFTSD GGNTID+ WY  K  LHHVWD  II TA +  Y+ N+D L + +++NIT   W
Sbjct: 161 VGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNLDLLQEDLEKNITNGLW 220

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
            D +  W  C+ +  ACP  YASE IK AC W YKGV  G  L +EYFN+RLPIV  R+ 
Sbjct: 221 HDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLSEEYFNTRLPIVMKRIV 279

Query: 242 QGGVRLAATLNRIF 255
           QGGVRLA  LNR+F
Sbjct: 280 QGGVRLAMILNRVF 293

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 173/253 (68%), Gaps = 7/253 (2%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
           QS   E    AVK+LLPESA+ +L +VC+W D +K    + W+SALHF DTPD  C Y+Y
Sbjct: 38  QSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALHFADTPDYKCNYEY 97

Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
           +RDC      K  CV GAI NYT QL+S +  S S   YNLTEAL+FLSH++GDIHQPLH
Sbjct: 98  SRDCP-----KDWCVTGAIFNYTNQLMSTSENSQSIVHYNLTEALMFLSHYMGDIHQPLH 152

Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
            GF  D GGN I VHWY ++  LH VWD+ IIE+A E +YNS++  ++  +Q  +   W+
Sbjct: 153 EGFIGDLGGNKIKVHWYNQETNLHRVWDDMIIESALETYYNSSLPRMIHELQAKLKNGWS 212

Query: 183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
           + V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D YF SRLP+V+ RLAQ
Sbjct: 213 NDVPSWESCQLNQTACPNPYASESIDLACKYAYRNATAGTTLGDYYFVSRLPVVEKRLAQ 272

Query: 243 GGVRLAATLNRIF 255
           GG+RLA TLNRIF
Sbjct: 273 GGIRLAGTLNRIF 285

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/244 (53%), Positives = 170/244 (69%), Gaps = 3/244 (1%)

Query: 15  AVKQLLPESADND-LGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDG 71
           AVK+LLPES D   L   C+W D +K    + W+S LH+++TP+  C Y+Y RDC D   
Sbjct: 44  AVKKLLPESVDGGGLADFCSWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHK 103

Query: 72  VKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGG 131
            K  CV GAI NYT QL+S +  S +   YNLTEALLFLSH++GD+HQPLH GF  D GG
Sbjct: 104 HKDWCVTGAIFNYTNQLMSASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGG 163

Query: 132 NTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETC 191
           NTI V+WY  K  LHHVWDN II++A E +YNS++  ++ A+Q  +   W++ V  W++C
Sbjct: 164 NTIIVNWYHNKSNLHHVWDNMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSC 223

Query: 192 SANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATL 251
             +  ACP++YASE I  AC +AY+  + G+ L DEYF SRLP+V+ RLAQGG+RLAATL
Sbjct: 224 HFHQKACPNLYASESIDLACKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATL 283

Query: 252 NRIF 255
           NRIF
Sbjct: 284 NRIF 287

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 120/271 (44%), Gaps = 43/271 (15%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNL---CT 59
           QS +  +     + +L + + + L +V TWAD  K+     +S   HFID  DN    C 
Sbjct: 34  QSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYHFIDAQDNPPQSCG 93

Query: 60  YQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQ 119
             Y+RDC    G  G C   AI NYT  LL   + S +        AL F+ H IGDIHQ
Sbjct: 94  VDYDRDC----GSAG-CSISAIQNYTNILLESPNGSEA------LNALKFVVHIIGDIHQ 142

Query: 120 PLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT 179
           PLH     + GGN IDV +      LHH+WD N+ E A   +  S      D + + I T
Sbjct: 143 PLH-DENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKT 201

Query: 180 --------DWADLVKKWETCS--------ANNTACPDVYASEGIKAACDWAYKGVSEGSV 223
                    W D +   +  S        AN   C  V   +G+      AY   ++   
Sbjct: 202 GTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVL-DDGL------AYINSTD--- 251

Query: 224 LEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 254
           L  EY++   P+ +  +A+ G RLAA L+ I
Sbjct: 252 LSGEYYDKSQPVFEELIAKAGYRLAAWLDLI 282

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 108/250 (43%), Gaps = 54/250 (21%)

Query: 34  WADHVKFHY--HWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 88
           WAD  +      WS++LHFID  DN    C   Y RDC    G  G C   AI NYT ++
Sbjct: 43  WADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV 97

Query: 89  LSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148
                + SS S  N  EAL FL HFIGD+ QPLH    +  GGN I+V +      LH  
Sbjct: 98  -----SDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSD 151

Query: 149 WD--------------------NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVK 186
           WD                      +++  E   Y +   G +  D I + ITT       
Sbjct: 152 WDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQATGWIKGDNISEPITT-----AT 206

Query: 187 KWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVR 246
           +W +  AN   C  V    G  A          +   L   Y++S +  ++L++A+GG R
Sbjct: 207 RWAS-DANALVCT-VVMPHGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYR 255

Query: 247 LAATLNRIFG 256
           LA  +N I G
Sbjct: 256 LANWINEIHG 265

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium sp (taxid: 5081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 108/250 (43%), Gaps = 54/250 (21%)

Query: 34  WADHVKFHY--HWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 88
           WAD  +      WS++LHFID  DN    C   Y RDC    G  G C   AI NYT ++
Sbjct: 43  WADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV 97

Query: 89  LSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148
                + SS S  N  EAL FL HFIGD+ QPLH    +  GGN I+V +      LH  
Sbjct: 98  -----SDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSD 151

Query: 149 WD--------------------NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVK 186
           WD                      +++  E   Y +   G +  D I + ITT       
Sbjct: 152 WDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITT-----AT 206

Query: 187 KWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVR 246
           +W +  AN   C  V    G  A          +   L   Y++S +  ++L++A+GG R
Sbjct: 207 RWAS-DANALVCT-VVMPHGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYR 255

Query: 247 LAATLNRIFG 256
           LA  +N I G
Sbjct: 256 LANWINEIHG 265

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium citrinum (taxid: 5077)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
225424003	285	PREDICTED: nuclease S1 isoform 1 [Vitis	0.972	0.873	0.769	1e-116
225424005	293	PREDICTED: nuclease S1 isoform 2 [Vitis	0.968	0.846	0.768	1e-115
224111668	290	predicted protein [Populus trichocarpa]	0.976	0.862	0.787	1e-115
255572090	291	Nuclease S1 precursor, putative [Ricinus	0.933	0.821	0.796	1e-114
4099833	280	bifunctional nuclease [Zinnia violacea]	0.972	0.889	0.765	1e-112
449434608	288	PREDICTED: endonuclease 2-like [Cucumis	0.980	0.871	0.753	1e-112
15221343	290	endonuclease 2 [Arabidopsis thaliana] gi	0.976	0.862	0.753	1e-111
297838585	290	hypothetical protein ARALYDRAFT_475947 [	0.976	0.862	0.75	1e-111
21554516	290	putative bifunctional nuclease [Arabidop	0.976	0.862	0.75	1e-111
356575560	284	PREDICTED: nuclease S1-like [Glycine max	0.968	0.873	0.730	1e-108

>gi|225424003|ref|XP_002282829.1| PREDICTED: nuclease S1 isoform 1 [Vitis vinifera] gi|297737807|emb|CBI27008.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/252 (76%), Positives = 222/252 (88%), Gaps = 3/252 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL + AADAVK+LLP SAD+DL S+C+WAD VKF YHWSS LHF++TPD+LCTYQY R
Sbjct: 37  QSRLSDVAADAVKELLPASADDDLASLCSWADRVKFRYHWSSPLHFLNTPDDLCTYQYTR 96

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDEDGVKGRCVAGAINNYT+QLL+Y S   S ++YNLTEALLFLSH +GD+HQPLHVG
Sbjct: 97  DCKDEDGVKGRCVAGAINNYTSQLLTYGS---SQADYNLTEALLFLSHLMGDVHQPLHVG 153

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FT+D+GGNTIDV WY RK VLHHVWD NIIETAEE+FY+SN+D ++DAI++NITT+WAD 
Sbjct: 154 FTTDKGGNTIDVKWYNRKTVLHHVWDTNIIETAEEQFYDSNVDDMIDAIEKNITTEWADQ 213

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           V KWE C  N TACPD+YASEGIKAACDW+YKGV E SVLED+YF SRLPI+  RLAQGG
Sbjct: 214 VPKWEICGGNKTACPDIYASEGIKAACDWSYKGVREDSVLEDDYFLSRLPIITFRLAQGG 273

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 274 VRLAATLNRIFG 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424005|ref|XP_002282886.1| PREDICTED: nuclease S1 isoform 2 [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/251 (76%), Positives = 221/251 (88%), Gaps = 3/251 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL + AADAVK+LLP SAD+DL S+C+WAD VKF YHWSS LHF++TPD+LCTYQY R
Sbjct: 37  QSRLSDVAADAVKELLPASADDDLASLCSWADRVKFRYHWSSPLHFLNTPDDLCTYQYTR 96

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDEDGVKGRCVAGAINNYT+QLL+Y S   S ++YNLTEALLFLSH +GD+HQPLHVG
Sbjct: 97  DCKDEDGVKGRCVAGAINNYTSQLLTYGS---SQADYNLTEALLFLSHLMGDVHQPLHVG 153

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FT+D+GGNTIDV WY RK VLHHVWD NIIETAEE+FY+SN+D ++DAI++NITT+WAD 
Sbjct: 154 FTTDKGGNTIDVKWYNRKTVLHHVWDTNIIETAEEQFYDSNVDDMIDAIEKNITTEWADQ 213

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           V KWE C  N TACPD+YASEGIKAACDW+YKGV E SVLED+YF SRLPI+  RLAQGG
Sbjct: 214 VPKWEICGGNKTACPDIYASEGIKAACDWSYKGVREDSVLEDDYFLSRLPIITFRLAQGG 273

Query: 245 VRLAATLNRIF 255
           VRLAATLNRIF
Sbjct: 274 VRLAATLNRIF 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111668|ref|XP_002315936.1| predicted protein [Populus trichocarpa] gi|222864976|gb|EEF02107.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/254 (78%), Positives = 222/254 (87%), Gaps = 4/254 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL EAAADAVKQLLPE A +DLGSVC+WAD V+F YHWS+ LHFI+TPD +C Y+Y R
Sbjct: 37  QSRLSEAAADAVKQLLPEYAGSDLGSVCSWADEVRFRYHWSAPLHFINTPD-VCNYKYTR 95

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHS---EYNLTEALLFLSHFIGDIHQPL 121
           DC+D+ G KGRCVAGAINNYTTQLL+YNS SS        NLTEALLFLSHF+GDIHQPL
Sbjct: 96  DCEDDTGEKGRCVAGAINNYTTQLLTYNSGSSQADIDLSDNLTEALLFLSHFMGDIHQPL 155

Query: 122 HVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDW 181
           HVGF SD+GGNTIDVHWY RKQVLHH+WD +IIETAEER YNSN+D LVDA+Q+NIT DW
Sbjct: 156 HVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERLYNSNVDDLVDAVQKNITNDW 215

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
           ADL+  WETCS N TACPD+YASEGIKAACDWAYKG +EG+VLED+YF SRLPIVKLRLA
Sbjct: 216 ADLIPGWETCSLNKTACPDIYASEGIKAACDWAYKGAAEGTVLEDDYFLSRLPIVKLRLA 275

Query: 242 QGGVRLAATLNRIF 255
           QGGVRLAATLNRIF
Sbjct: 276 QGGVRLAATLNRIF 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572090|ref|XP_002526985.1| Nuclease S1 precursor, putative [Ricinus communis] gi|223533620|gb|EEF35357.1| Nuclease S1 precursor, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 219/246 (89%), Gaps = 7/246 (2%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL +AAADAVK+LLPE A+NDLGS+C+WADHVKF YHWSSALH+IDTPD+LC YQY+R
Sbjct: 39  QSRLSDAAADAVKELLPEYANNDLGSICSWADHVKFRYHWSSALHYIDTPDSLCNYQYHR 98

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DC DE+G KGRCVAGAINNYT+QLL+YNSASS  +EYNLTEALLFLSHF+GDIHQPLHVG
Sbjct: 99  DCMDENGEKGRCVAGAINNYTSQLLTYNSASS-QAEYNLTEALLFLSHFVGDIHQPLHVG 157

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FTSDRGGNTIDVHWYTRKQVLHHVWD NIIETAEERFYNSN+D ++DAIQQNITT+W +L
Sbjct: 158 FTSDRGGNTIDVHWYTRKQVLHHVWDANIIETAEERFYNSNVDDMIDAIQQNITTEWVNL 217

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGS------VLEDEYFNSRLPIVKL 238
           V +WETCS N T CPD+YASEGIKAACDWAYKG +EGS      +L D+YF SR PIV L
Sbjct: 218 VPRWETCSGNKTTCPDIYASEGIKAACDWAYKGANEGSKQLSKKLLADDYFLSRKPIVTL 277

Query: 239 RLAQGG 244
           RLAQ G
Sbjct: 278 RLAQAG 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4099833|gb|AAD00694.1| bifunctional nuclease [Zinnia violacea]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/252 (76%), Positives = 214/252 (84%), Gaps = 3/252 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           Q RL + A DAV  LLPE A+ DL S+C+WADHVKF YHWSSALH+IDTPDNLCTYQY R
Sbjct: 32  QGRLSQTAVDAVNSLLPEYAEGDLASLCSWADHVKFRYHWSSALHYIDTPDNLCTYQYRR 91

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDEDGV GRCVAGAI NYTTQLL Y   +S   +YNLTEALLFLSHF+GDIHQPLHVG
Sbjct: 92  DCKDEDGVMGRCVAGAIMNYTTQLLDYGKQTS---QYNLTEALLFLSHFMGDIHQPLHVG 148

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FTSDRGGNTIDVHW+TRK VLHHVWD++IIETAEERFY SN++ L+DAI+ NIT  W D 
Sbjct: 149 FTSDRGGNTIDVHWFTRKAVLHHVWDDSIIETAEERFYGSNVENLIDAIETNITNVWGDQ 208

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           VK WE CSAN   CP++YA+EGIKAAC+WAYKGV+ GSVLED+YF SRLPIV  RLAQGG
Sbjct: 209 VKAWENCSANQKTCPNIYATEGIKAACNWAYKGVTNGSVLEDDYFLSRLPIVNWRLAQGG 268

Query: 245 VRLAATLNRIFG 256
           VRLAA LNRIFG
Sbjct: 269 VRLAANLNRIFG 280

Source: Zinnia violacea

Species: Zinnia violacea

Genus: Zinnia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434608|ref|XP_004135088.1| PREDICTED: endonuclease 2-like [Cucumis sativus] gi|449519637|ref|XP_004166841.1| PREDICTED: endonuclease 2-like [Cucumis sativus]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 218/252 (86%), Gaps = 1/252 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL +AAADAV++LLPESA  DL SVC WAD VKF Y WS  LHFIDTPD+LCTYQY+R
Sbjct: 37  QSRLSKAAADAVQELLPESAQGDLASVCIWADRVKFRYRWSPPLHFIDTPDSLCTYQYDR 96

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDE G KGRCVAGAINNYT+QLL+YN A  S+SEYNLTEALLFLSHF+GDIHQPLHVG
Sbjct: 97  DCKDEAGEKGRCVAGAINNYTSQLLTYN-AQPSNSEYNLTEALLFLSHFMGDIHQPLHVG 155

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FT DRGGNTIDVHWYTRKQ LHH+WD+NIIETAE +FY+ ++DGLVDAIQ NI  +WAD 
Sbjct: 156 FTGDRGGNTIDVHWYTRKQNLHHIWDSNIIETAEGKFYDFSVDGLVDAIQTNIKNEWADQ 215

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           V++WE C ++   C ++YASE I+AACDWAYKGVSEGS L ++YF SR+P++KLRLAQGG
Sbjct: 216 VEEWEKCGSDEVPCTEIYASESIQAACDWAYKGVSEGSTLAEKYFASRVPVLKLRLAQGG 275

Query: 245 VRLAATLNRIFG 256
           VRLAA LNRIFG
Sbjct: 276 VRLAAALNRIFG 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221343|ref|NP_176996.1| endonuclease 2 [Arabidopsis thaliana] gi|75169708|sp|Q9C9G4.1|ENDO2_ARATH RecName: Full=Endonuclease 2; Short=AtENDO2; AltName: Full=Deoxyribonuclease ENDO2; AltName: Full=Single-stranded-nucleate endonuclease ENDO2; Flags: Precursor gi|12325316|gb|AAG52597.1|AC016447_6 putative bifunctional nuclease; 47147-45601 [Arabidopsis thaliana] gi|332196656|gb|AEE34777.1| endonuclease 2 [Arabidopsis thaliana]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 219/252 (86%), Gaps = 2/252 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD  C+YQYNR
Sbjct: 41  QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDE G KGRCVAGAI NYTTQLLSY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV 
Sbjct: 100 DCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVS 159

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           + SD+GGNTI+VHWYTRK  LHH+WD+NIIETAE   YNS ++G+VDA+++NITT+WAD 
Sbjct: 160 YASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQ 219

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           VK+WETC+   TACPD+YASEGI+AACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGG
Sbjct: 220 VKRWETCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 279 VRLAATLNRIFG 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838585|ref|XP_002887174.1| hypothetical protein ARALYDRAFT_475947 [Arabidopsis lyrata subsp. lyrata] gi|297333015|gb|EFH63433.1| hypothetical protein ARALYDRAFT_475947 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/252 (75%), Positives = 221/252 (87%), Gaps = 2/252 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD  C+YQYNR
Sbjct: 41  QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDE G KGRCVAGAI NYT+QLLSYN+A+SS S+YNLTEALLF+SHF+GDIHQPLHVG
Sbjct: 100 DCKDEAGEKGRCVAGAIYNYTSQLLSYNTAASSQSQYNLTEALLFVSHFMGDIHQPLHVG 159

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           + SD+GGNTI+VHWY+RK  LHH+WD+NIIETAE   YNS ++G+VDA+++NITT+WAD 
Sbjct: 160 YASDKGGNTIEVHWYSRKANLHHIWDSNIIETAEADLYNSELEGMVDALKKNITTEWADQ 219

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           VK+WE+C+   TACPD+YASEGI+AACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGG
Sbjct: 220 VKRWESCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 279 VRLAATLNRIFG 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554516|gb|AAM63596.1| putative bifunctional nuclease [Arabidopsis thaliana]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/252 (75%), Positives = 219/252 (86%), Gaps = 2/252 (0%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD  C+YQYNR
Sbjct: 41  QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKDE G KGRCVAGAI NYTTQLLSY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV 
Sbjct: 100 DCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVS 159

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           + SD+GGNTI+VHWYTRK  LHH+WD+NIIETAE   YNS ++G+VDA+++NITT+WAD 
Sbjct: 160 YASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQ 219

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           VK+W+TC+   TACPD+YASEGI+AACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGG
Sbjct: 220 VKRWDTCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 279 VRLAATLNRIFG 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575560|ref|XP_003555908.1| PREDICTED: nuclease S1-like [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/252 (73%), Positives = 213/252 (84%), Gaps = 4/252 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
           QSRL ++AA+AVK LLPE A NDLG+VC+WAD V+F+ HWS+ LHF DTPDNLC YQY+R
Sbjct: 37  QSRLSDSAANAVKNLLPEYAQNDLGNVCSWADRVRFYLHWSAPLHFADTPDNLCNYQYDR 96

Query: 65  DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
           DCKD+DGVKGRCV GAI NYT QLL Y      +++ NLT+AL+FLSHF+GD+HQPLHVG
Sbjct: 97  DCKDQDGVKGRCVVGAIKNYTDQLLDY----GKNTQNNLTQALMFLSHFMGDVHQPLHVG 152

Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
           FTSDRG N+I+VHWYTRKQ LHHVWD NIIETAEERFY+SNID   +AIQ+NIT  W+D 
Sbjct: 153 FTSDRGANSINVHWYTRKQNLHHVWDVNIIETAEERFYDSNIDEFTNAIQENITKTWSDQ 212

Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
           V  WETC +  TACPD+YASEG++AAC WAYKG  EGSVLED+YF SRLP+V LRLAQGG
Sbjct: 213 VLGWETCDSKETACPDIYASEGVQAACQWAYKGAPEGSVLEDDYFLSRLPVVSLRLAQGG 272

Query: 245 VRLAATLNRIFG 256
           VRLAATLNRIFG
Sbjct: 273 VRLAATLNRIFG 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2199297	290	ENDO2 "AT1G68290" [Arabidopsis	0.976	0.862	0.730	1.6e-102
TAIR|locus:504955531	299	ENDO4 "endonuclease 4" [Arabid	0.980	0.839	0.573	4.2e-79
TAIR|locus:2202114	305	BFN1 "bifunctional nuclease i"	0.972	0.816	0.527	1.1e-71
TAIR|locus:2119687	294	ENDO3 "endonuclease 3" [Arabid	0.960	0.836	0.525	4.3e-70
TAIR|locus:2119612	296	ENDO5 "endonuclease 5" [Arabid	0.941	0.814	0.524	3.8e-69
UNIPROTKB|G5EHU9	306	MGCH7_ch7g611 "Nuclease PA3" [	0.867	0.725	0.301	6.1e-23

TAIR|locus:2199297 ENDO2 "AT1G68290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 184/252 (73%), Positives = 211/252 (83%)

Query:     5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
             Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD  C+YQYNR
Sbjct:    41 QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99

Query:    65 DCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVG 124
             DCKDE G KGRCVAGAI NYTTQLL          +YNLTEALLF+SHF+GDIHQPLHV 
Sbjct:   100 DCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVS 159

Query:   125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
             + SD+GGNTI+VHWYTRK  LHH+WD+NIIETAE   YNS ++G+VDA+++NITT+WAD 
Sbjct:   160 YASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQ 219

Query:   185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
             VK+WETC+   TACPD+YASEGI+AACDWAYKGV+EG  LEDEYF SRLPIV  RLAQGG
Sbjct:   220 VKRWETCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278

Query:   245 VRLAATLNRIFG 256
             VRLAATLNRIFG
Sbjct:   279 VRLAATLNRIFG 290

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:504955531 ENDO4 "endonuclease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 145/253 (57%), Positives = 179/253 (70%)

Query:     5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSALHFIDTPDNLCTYQY 62
             +S   E    AVK+LLP+SAD DL SVC+W D +K H+ W  +S LH++DTPD  C Y+Y
Sbjct:    38 ESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLHYVDTPDYRCNYEY 97

Query:    63 NRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLH 122
              RDC D    + RCV GAI NYT QL+           YNLTEAL+FLSHFIGDIHQPLH
Sbjct:    98 CRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALMFLSHFIGDIHQPLH 157

Query:   123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
             VGF  D GGNTI V WY RK  LHHVWDN IIE+A + +YN ++  +++A+Q N+T DW+
Sbjct:   158 VGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLMIEALQANLTNDWS 217

Query:   183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
             + V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D+YF SRLPIV+ RLAQ
Sbjct:   218 NDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYFLSRLPIVEKRLAQ 277

Query:   243 GGVRLAATLNRIF 255
             GG+RLAATLNRIF
Sbjct:   278 GGIRLAATLNRIF 290

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2202114 BFN1 "bifunctional nuclease i" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 134/254 (52%), Positives = 169/254 (66%)

Query:     5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
             Q+ L    A  V+ LLP+    DL ++C W D ++  + Y W+S LH+IDTPD  C+Y+Y
Sbjct:    42 QNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTSHLHYIDTPDQACSYEY 101

Query:    63 NRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLH 122
             +RDC D+ G+K  CV GAI N+T+QL            YN+TEALLFLSHF+GDIHQP+H
Sbjct:   102 SRDCHDQHGLKDMCVDGAIQNFTSQL-QHYGEGTSDRRYNMTEALLFLSHFMGDIHQPMH 160

Query:   123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
             VGFTSD GGNTID+ WY  K  LHHVWD  II TA +  Y+ N+D L + +++NIT   W
Sbjct:   161 VGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNLDLLQEDLEKNITNGLW 220

Query:   182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
              D +  W  C+ +  ACP  YASE IK AC W YKGV  G  L +EYFN+RLPIV  R+ 
Sbjct:   221 HDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLSEEYFNTRLPIVMKRIV 279

Query:   242 QGGVRLAATLNRIF 255
             QGGVRLA  LNR+F
Sbjct:   280 QGGVRLAMILNRVF 293

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0080187 "floral organ senescence" evidence=IEP

TAIR|locus:2119687 ENDO3 "endonuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 133/253 (52%), Positives = 169/253 (66%)

Query:     5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQY 62
             QS   E    AVK+LLPESA+ +L +VC+W D +K    + W+SALHF DTPD  C Y+Y
Sbjct:    38 QSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALHFADTPDYKCNYEY 97

Query:    63 NRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLH 122
             +RDC      K  CV GAI NYT QL+           YNLTEAL+FLSH++GDIHQPLH
Sbjct:    98 SRDCP-----KDWCVTGAIFNYTNQLMSTSENSQSIVHYNLTEALMFLSHYMGDIHQPLH 152

Query:   123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
              GF  D GGN I VHWY ++  LH VWD+ IIE+A E +YNS++  ++  +Q  +   W+
Sbjct:   153 EGFIGDLGGNKIKVHWYNQETNLHRVWDDMIIESALETYYNSSLPRMIHELQAKLKNGWS 212

Query:   183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
             + V  WE+C  N TACP+ YASE I  AC +AY+  + G+ L D YF SRLP+V+ RLAQ
Sbjct:   213 NDVPSWESCQLNQTACPNPYASESIDLACKYAYRNATAGTTLGDYYFVSRLPVVEKRLAQ 272

Query:   243 GGVRLAATLNRIF 255
             GG+RLA TLNRIF
Sbjct:   273 GGIRLAGTLNRIF 285

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2119612 ENDO5 "endonuclease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 128/244 (52%), Positives = 166/244 (68%)

Query:    15 AVKQLLPESADND-LGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDG 71
             AVK+LLPES D   L   C+W D +K    + W+S LH+++TP+  C Y+Y RDC D   
Sbjct:    44 AVKKLLPESVDGGGLADFCSWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHK 103

Query:    72 VKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGG 131
              K  CV GAI NYT QL+           YNLTEALLFLSH++GD+HQPLH GF  D GG
Sbjct:   104 HKDWCVTGAIFNYTNQLMSASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGG 163

Query:   132 NTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETC 191
             NTI V+WY  K  LHHVWDN II++A E +YNS++  ++ A+Q  +   W++ V  W++C
Sbjct:   164 NTIIVNWYHNKSNLHHVWDNMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSC 223

Query:   192 SANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATL 251
               +  ACP++YASE I  AC +AY+  + G+ L DEYF SRLP+V+ RLAQGG+RLAATL
Sbjct:   224 HFHQKACPNLYASESIDLACKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATL 283

Query:   252 NRIF 255
             NRIF
Sbjct:   284 NRIF 287

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|G5EHU9 MGCH7_ch7g611 "Nuclease PA3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 79/262 (30%), Positives = 126/262 (48%)

Query:    16 VKQLLPESADNDLGSVCTWADHVKFHY--HWSSALHFIDTPDN---LCTYQYNRDCKDED 70
             +++LL    D  L  V TWAD +++    H++   HFID  D+    C+   +RDCKD+ 
Sbjct:    46 LQRLLRNDTDAYLAGVATWADSIRYTKWGHFTGVFHFIDAKDDPPRSCSVDMDRDCKDQG 105

Query:    71 GVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRG 130
                  CV  A+ NYT++++          E+   +A  F+ HF+GD+HQPLH    + RG
Sbjct:   106 -----CVVTALQNYTSRMMDLDRLR----EWERAQAAKFVVHFVGDMHQPLHDEDVA-RG 155

Query:   131 GNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWET 190
             GN I V W+ R+  LH VWD+ I E            G+ DA +      WAD +++   
Sbjct:   156 GNGIHVLWHGREYNLHSVWDSAIAEQLRGGVRRGR--GMYDAAKV-----WADELEREVK 208

Query:   191 CS---ANNTACPD-VYASEGIKAACDWAYKGVS--------------EGSVLEDEYFNSR 232
                  A + A  D V  ++ +  A  WA +G +              +G  L  +Y+   
Sbjct:   209 AGRFRAESEAWLDGVDLADPVGTALIWARQGNAFVCSHVLPEGPEAIKGQELSGKYYEEA 268

Query:   233 LPIVKLRLAQGGVRLAATLNRI 254
              P+++ ++A+ G RLA  L+ I
Sbjct:   269 APVIESQVARAGFRLARWLDLI 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       246    0.0010  113 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  233 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.58u 0.09s 18.67t   Elapsed:  00:00:01
  Total cpu time:  18.58u 0.09s 18.67t   Elapsed:  00:00:01
  Start:  Thu May  9 22:12:18 2013   End:  Thu May  9 22:12:19 2013

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9G4	ENDO2_ARATH	3, ., 1, ., 3, 0, ., 1	0.7539	0.9765	0.8620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30.1	0.824
3rd Layer	3.1.30	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam02265	251	pfam02265, S1-P1_nuclease, S1/P1 Nuclease	1e-107
cd11010	249	cd11010, S1-P1_nuclease, S1/P1 nucleases and relat	5e-76
cd10981	238	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C	4e-06

>gnl|CDD|216953 pfam02265, S1-P1_nuclease, S1/P1 Nuclease

 Score =  309 bits (793), Expect = e-107
 Identities = 115/255 (45%), Positives = 141/255 (55%), Gaps = 20/255 (7%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQY 62
           +  L   A  AV++LLP   D DL  V TWAD ++    Y W+S  H+IDTPDN      
Sbjct: 14  ERHLSPKARKAVQRLLPGL-DGDLAQVATWADDIRSDGKYRWTSPWHYIDTPDNPP---- 68

Query: 63  NRDCKD-EDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPL 121
            RDC D ED  K  CV  AINNYT+QL    +     S     EAL FL HF+GDIHQPL
Sbjct: 69  PRDCHDAEDCPKEGCVVSAINNYTSQLKDTTA-----SSDQRAEALKFLVHFVGDIHQPL 123

Query: 122 HVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDW 181
           H G   DRGGN I V W+ RK  LH VWD+ IIETA   +Y S++    DA++  IT   
Sbjct: 124 HAGRAGDRGGNDIKVRWFGRKTNLHSVWDSGIIETALGDYYRSSLSEWADALEATITFGE 183

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
                            P  +A E    AC   Y GV+ G+ L DEY++S LP+V+L+LA
Sbjct: 184 YKDAW-------EPGTTPLDWAEESNALACKVVYPGVTNGATLSDEYYDSALPVVELQLA 236

Query: 242 QGGVRLAATLNRIFG 256
           + G RLAA LNRIF 
Sbjct: 237 KAGYRLAALLNRIFD 251

This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. Length = 251

>gnl|CDD|211382 cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes

 Score =  230 bits (589), Expect = 5e-76
 Identities = 89/255 (34%), Positives = 122/255 (47%), Gaps = 23/255 (9%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQY 62
           +  L   A  AV +LL   +   L    TWAD ++    Y W++  H+++ PDN C +  
Sbjct: 14  EQYLTPKARKAVDRLLGGLSGESLAEAATWADDIRSDPAYKWTAPWHYVNIPDNPCKFYD 73

Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
            RDC         CV  AI NYT +L        S S+    EAL FL HF+GDIHQPLH
Sbjct: 74  ERDCPPGG-----CVVSAIKNYTARL-----KDPSLSDAERAEALKFLIHFVGDIHQPLH 123

Query: 123 VGFTSDRGGNTIDVH-WYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDW 181
           VG   D GGN  DV  W+ RK  LH VWD+ +I+ A+  +       L   + + I T  
Sbjct: 124 VGSREDGGGNDGDVGGWFGRKTNLHSVWDSGLIDKAKGSYTELAAALLAALLAEAIETGL 183

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGS-VLEDEYFNSRLPIVKLRL 240
                      A+    P  +A E  + AC+  Y  +   +  L   Y+    P+V+ +L
Sbjct: 184 ---------EEADAEGDPADWAQESYELACEIYYPNLPGDTLELSYAYYYKAKPVVEEQL 234

Query: 241 AQGGVRLAATLNRIF 255
           A+ G RLAA LN IF
Sbjct: 235 AKAGYRLAAVLNEIF 249

This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis. Length = 249

>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 33  TWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYN 92
              D  ++     +  H +D  D   +   ++  +D  G  G      I  +  Q L   
Sbjct: 40  VAPDKRRYDDDGEAQNHVLDVDDYGDSAL-DKYGEDTLGYWG-GAPWQIQEWY-QRLVD- 95

Query: 93  SASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNN 152
            A       ++  A   LSH+IGD H PLH                 T +  +H  W+  
Sbjct: 96  -AFRRKDWKDIAFAAGVLSHYIGDAHVPLHTTQN--------YNGQLTGQDGIHRAWETR 146

Query: 153 IIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKW 188
           I E   E +  ++  G     + +      + +   
Sbjct: 147 IPELYAELYALTDAFGDPFVGKADYIKWPKEYIWDA 182

This model describes both the bacterial and archeal zinc-dependent phospholipase C, a domain found in the alpha toxin of Clostridium perfringens, as well as S1/P1 nucleases, which predominantly act on single-stranded DNA and RNA. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PF02265	252	S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR00315	100.0
smart00770	241	Zn_dep_PLPC Zinc dependent phospholipase C (alpha	94.73

>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3

Probab=100.00  E-value=2.8e-66  Score=452.95  Aligned_cols=236  Identities=38%  Similarity=0.698  Sum_probs=182.5

Q ss_pred             hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc---cCCCCCccccccCCC--CCCCcccCCCCccCCCCCCCc
Q 025227            2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF---HYHWSSALHFIDTPD--NLCTYQYNRDCKDEDGVKGRC   76 (256)
Q Consensus         2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~---~~~~~~~wHy~~~p~--~~~~~~~~~dc~~~~~~~~~c   76 (256)
                      +||+++|+|++++.|++||+.....+|+++|+|||+||+   +++++++|||+|+|.  ..|++.+..+|     ++++|
T Consensus        11 ~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~-----~~~~~   85 (252)
T PF02265_consen   11 EIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC-----PNGGC   85 (252)
T ss_dssp             HHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS------TT--
T ss_pred             HHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC-----CCCCc
Confidence            699999999999999999996556899999999999998   579999999999998  45566555778     56999


Q ss_pred             HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCc-ccCCCCCCCCceEEEecCccCCchhhhhhhhHh
Q 025227           77 VAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH-VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIE  155 (256)
Q Consensus        77 vv~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH-~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~  155 (256)
                      |+++|.+++++|++.+.+     .++++++|||||||||||||||| ++++||+|||+++|+|+|+++|||+|||++|++
T Consensus        86 ~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nLH~~WD~~l~~  160 (252)
T PF02265_consen   86 VVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNLHSVWDSGLIN  160 (252)
T ss_dssp             HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcHHHHHHHHHHH
Confidence            999999999999998766     44899999999999999999999 678999999999999999999999999999998


Q ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHhchHHH
Q 025227          156 TAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPI  235 (256)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~~~~~~  235 (256)
                      +.....+..++.++++.|.+.++.   +..+.|.+      .+|.+|+.||++++|+++|+.+..+.+|+++|+.+++++
T Consensus       161 ~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~------~~~~~Wa~ES~~la~~~~y~~~~~~~~l~~~Y~~~~~~~  231 (252)
T PF02265_consen  161 YMIKNKYQSSWQEYADELDRKITK---ESFKSWQP------GDPEDWANESHELACNIVYPGIKNGTELSDEYYTKARPV  231 (252)
T ss_dssp             HHHS--SHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHHHHHHTTSTT-SGGGS-TTHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHHHhhccc---hhhhhhhh------hhHHHHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHH
Confidence            765433333466788888766653   45566754      489999999999999999988888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhC
Q 025227          236 VKLRLAQGGVRLAATLNRIFG  256 (256)
Q Consensus       236 ~~~ql~~AG~RLA~~Ln~i~~  256 (256)
                      +++||++||+|||.+||+||+
T Consensus       232 ~~~ql~~AG~RLA~~Ln~i~~  252 (252)
T PF02265_consen  232 AEEQLAKAGYRLAAVLNEIFD  252 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999985

1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.

>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin)

Probab=94.73  E-value=0.036  Score=48.14  Aligned_cols=79  Identities=23%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             ChhhhccccccccccCCCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHHHHHHHHHHh----ccCCCCCCCccccc
Q 025227           27 DLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQL----LSYNSASSSHSEYN  102 (256)
Q Consensus        27 ~~~~~a~WaD~ik~~~~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ai~~~~~~L----~~~~~~~~~~~~~~  102 (256)
                      .|..-.+|||.-...+.. ..+||.|...+ .+|-+          ...........+...-    +.+...       .
T Consensus        72 ~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~----------~~~~A~~~~~ky~~~A~~~~~~g~~~-------~  132 (241)
T smart00770       72 ELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLP----------GFSNAKDTGRKYFKLALNEWKKGNYK-------K  132 (241)
T ss_pred             HHHcCCcccccCcccccc-ccccccCCCCC-CCCCC----------CCCcHHHHHHHHHHHHHHHHHcCCHH-------H
Confidence            577778899986654442 37799985332 23211          1122333333333322    222211       2


Q ss_pred             HHHHHHHHHHHhhcCCCCCccc
Q 025227          103 LTEALLFLSHFIGDIHQPLHVG  124 (256)
Q Consensus       103 ~~~aLk~LiHlvGDiHQPLH~~  124 (256)
                      --+.|-.-+|+++|+-||+|++
T Consensus       133 A~~~LG~a~Hy~~D~~~P~Ha~  154 (241)
T smart00770      133 AFFYLGRACHYLGDLSTPYHAN  154 (241)
T ss_pred             HHHHHHHHHHHHHhcCCccccc
Confidence            3466888899999999999986

This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
3sng_A	277	X-ray Structure Of Fully Glycosylated Bifunctional		2e-74
4dj4_A	277	X-ray Structure Of Mutant N211d Of Bifunctional Nuc		8e-74
1ak0_A	270	P1 Nuclease In Complex With A Substrate Analog Leng		1e-14

>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/255 (53%), Positives = 168/255 (65%), Gaps = 5/255 (1%)
Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
           Q  L + AA AVK LLPE  + DL ++C W D V+  + Y W+S LHFIDTPD  C + Y
Sbjct: 14  QGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDY 73
Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLH 122
            RDC D+ GVK  CVAGAI N+TTQL            YN+TEALLFLSHF+GDIHQP+H
Sbjct: 74  ERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLFLSHFMGDIHQPMH 132
Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
           VGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L + I+ N T   W
Sbjct: 133 VGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIW 192
Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
           +D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+YFNSRLPIV  R+A
Sbjct: 193 SDDLASWREC-GNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVA 251
Query: 242 QGGVRLAATLNRIFG 256
           QGG+RLA  LN +FG
Sbjct: 252 QGGIRLAMLLNNVFG 266

>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  273 bits (697), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 135/255 (52%), Positives = 168/255 (65%), Gaps = 5/255 (1%)
Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
           Q  L + AA AVK LLPE  + DL ++C W D V+  + Y W+S LHFIDTPD  C + Y
Sbjct: 14  QGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDY 73
Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLH 122
            RDC D+ GVK  CVAGAI N+TTQL            YN+TEALLFLSHF+GDIHQP+H
Sbjct: 74  ERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLFLSHFMGDIHQPMH 132
Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
           VGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L + I+ + T   W
Sbjct: 133 VGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGDFTDGIW 192
Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
           +D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+YFNSRLPIV  R+A
Sbjct: 193 SDDLASWREC-GNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVA 251
Query: 242 QGGVRLAATLNRIFG 256
           QGG+RLA  LN +FG
Sbjct: 252 QGGIRLAMLLNNVFG 266

>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog Length = 270

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 104/250 (41%), Gaps = 54/250 (21%)
Query: 34  WADHVKFHY--HWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 88
           WAD  +      WS++LHFID  DN    C   Y RDC    G  G C   AI NYT ++
Sbjct: 43  WADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV 97
Query: 89  LXXXXXXXXXXEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148
                        N  EAL FL HFIGD+ QPLH    +  GGN I+V +      LH  
Sbjct: 98  -----SDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSD 151
Query: 149 WD--------------------NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVK 186
           WD                      +++  E   Y +   G +  D I + ITT       
Sbjct: 152 WDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITT-----AT 206
Query: 187 KWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVR 246
           +W +  AN   C  V    G  A          +   L   Y++S +  ++L++A+GG R
Sbjct: 207 RWAS-DANALVCT-VVMPHGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYR 255
Query: 247 LAATLNRIFG 256
           LA  +N I G
Sbjct: 256 LANWINEIHG 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	2e-73
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	3e-63
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	2e-04

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} Length = 277

 Score =  224 bits (571), Expect = 2e-73
 Identities = 138/255 (54%), Positives = 170/255 (66%), Gaps = 5/255 (1%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQY 62
           Q  L + AA AVK LLPE  + DL ++C W D V+    Y W+S LHFIDTPD  C + Y
Sbjct: 14  QGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDY 73

Query: 63  NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
            RDC D+ GVK  CVAGAI N+TTQL  Y    +S   YN+TEALLFLSHF+GDIHQP+H
Sbjct: 74  ERDCHDQHGVKDMCVAGAIQNFTTQLSHYRE-GTSDRRYNMTEALLFLSHFMGDIHQPMH 132

Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
           VGFTSD GGN+ID+ W+  K  LHHVWD  II TA + +Y  +I+ L + I+ N T   W
Sbjct: 133 VGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIW 192

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
           +D +  W  C  N  +C + +A+E I  AC W YKGV  G  L D+YFNSRLPIV  R+A
Sbjct: 193 SDDLASWRECG-NVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVA 251

Query: 242 QGGVRLAATLNRIFG 256
           QGG+RLA  LN +FG
Sbjct: 252 QGGIRLAMLLNNVFG 266

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2 Length = 270

 Score =  198 bits (503), Expect = 3e-63
 Identities = 78/263 (29%), Positives = 113/263 (42%), Gaps = 22/263 (8%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFH--YHWSSALHFIDTPDNL---CT 59
           Q  +   AA   + +L  S+ + L S+ +WAD  +      WS++LHFID  DN    C 
Sbjct: 14  QHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCN 73

Query: 60  YQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQ 119
             Y RDC         C   AI NYT ++     + SS S  N  EAL FL HFIGD+ Q
Sbjct: 74  VDYERDCGSSG-----CSISAIANYTQRV-----SDSSLSSENHAEALRFLVHFIGDMTQ 123

Query: 120 PLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT 179
           PLH       GGN I+V +      LH  WD  + +        S+ +     + QNI +
Sbjct: 124 PLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIES 182

Query: 180 D-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYK---GVSEGSVLEDEYFNSRL 233
             +      W               +AS+     C           +   L   Y++S +
Sbjct: 183 GNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDSVI 242

Query: 234 PIVKLRLAQGGVRLAATLNRIFG 256
             ++L++A+GG RLA  +N I G
Sbjct: 243 DTIELQIAKGGYRLANWINEIHG 265

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A Length = 245

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 25/168 (14%)

Query: 91  YNSASSSHSEYNLTEALLFL---SHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHH 147
           +  A  S+   ++ +A  +L    H++GD++QP+H            +    +  Q  H 
Sbjct: 94  FKLAGESYKNKDMKQAFFYLGLSLHYLGDVNQPMHAA----------NFTNLSYPQGFHS 143

Query: 148 VWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGI 207
            ++N +    +   Y           +     +W                      S  +
Sbjct: 144 KYENFVDTIKDN--YKVTDGNGYWNWKGTNPEEWIH----------GAAVVAKQDYSGIV 191

Query: 208 KAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 255
                  +   +      D++     P+   RL       A  +   F
Sbjct: 192 NDNTKDWFVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWF 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	100.0
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	100.0
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	100.0
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	93.35
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	90.93

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*

Probab=100.00  E-value=1.1e-75  Score=516.71  Aligned_cols=253  Identities=54%  Similarity=1.028  Sum_probs=229.3

Q ss_pred             hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc--cCCCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHH
Q 025227            2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAG   79 (256)
Q Consensus         2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~--~~~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~   79 (256)
                      +||+++|+|++++.|++||+.+.+.+|+++|+|||+||+  .++|+++|||+|+|++.|++++.+||++..+++++||++
T Consensus        11 ~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~~~~~~~cvv~   90 (277)
T 3sng_A           11 RIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQHGVKDMCVAG   90 (277)
T ss_dssp             HHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCTTCCBTCSHHH
T ss_pred             HHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccccCCCcchHHH
Confidence            699999999999999999997778899999999999996  789999999999999999999999997655567999999


Q ss_pred             HHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHHHH
Q 025227           80 AINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEE  159 (256)
Q Consensus        80 ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~  159 (256)
                      ||.+++++|++.+.... .+.+++++|||||||||||||||||+++.+|+|||+|+|.|+|+++|||+|||++|+++..+
T Consensus        91 aI~~~t~~L~~~~~~~~-~~~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NLH~vWDs~ii~~~~~  169 (277)
T 3sng_A           91 AIQNFTTQLSHYREGTS-DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAK  169 (277)
T ss_dssp             HHHHHHHHHTTTTTCCC-CTTCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccc-CChHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCchHHHHHhhhhhhhhc
Confidence            99999999998751000 01458999999999999999999999999999999999999999999999999999998777


Q ss_pred             hccCCCHHHHHHHHHHhhhhh-hHHHHHhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHhchHHHHHH
Q 025227          160 RFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKL  238 (256)
Q Consensus       160 ~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~  238 (256)
                      .++..++.+|++.|.+.|+.+ |+++.++|..|.+ ...||.+|+.||+++||++||+..++|.+|+++|+.++.|++|+
T Consensus       170 ~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~~-~~~~~~~Wa~ES~~la~~~vY~~~~~~~~L~~~Y~~~~~~i~e~  248 (277)
T 3sng_A          170 DYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGN-VFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMK  248 (277)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCCS-HHHHHHHHHHHHHHHHHHTTSTTCCTTCEECHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHhhcccchhHHHHHhhccc-ccCCHHHHHHHHHHHHHHHhccCCCCCCccCHHHHHHHHHHHHH
Confidence            777778899999998888875 8888889988753 56799999999999999999998888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q 025227          239 RLAQGGVRLAATLNRIFG  256 (256)
Q Consensus       239 ql~~AG~RLA~~Ln~i~~  256 (256)
                      ||++||||||.+||.||+
T Consensus       249 qla~aG~RLA~~LN~i~~  266 (277)
T 3sng_A          249 RVAQGGIRLAMLLNNVFG  266 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999999985

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2

Probab=100.00  E-value=1.6e-68  Score=470.40  Aligned_cols=244  Identities=30%  Similarity=0.488  Sum_probs=214.5

Q ss_pred             hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc--cCCCCCccccccCC---CCCCCcccCCCCccCCCCCCCc
Q 025227            2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTP---DNLCTYQYNRDCKDEDGVKGRC   76 (256)
Q Consensus         2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~--~~~~~~~wHy~~~p---~~~~~~~~~~dc~~~~~~~~~c   76 (256)
                      +||+++|+|++++.|++||+.....+|+++|+|||+||+  .++|+++|||+|+|   ...|++++.+||     ++++|
T Consensus        11 ~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc-----~~~~c   85 (270)
T 1ak0_A           11 YVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC-----GSSGC   85 (270)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS-----CTTCC
T ss_pred             HHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC-----CCccc
Confidence            699999999999999999997656679999999999997  57999999999996   456999889999     45899


Q ss_pred             HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhH
Q 025227           77 VAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIET  156 (256)
Q Consensus        77 vv~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~  156 (256)
                      |+++|++++++|++.+.+     .+++++|||||||||||||||||++ .+|+|||+|+|.|+|+++|||+|||++|+++
T Consensus        86 v~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH~vWDs~i~~~  159 (270)
T 1ak0_A           86 SISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLHSDWDTYMPQK  159 (270)
T ss_dssp             HHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccHHHHhccchhh
Confidence            999999999999997765     5689999999999999999999999 6899999999999999999999999999987


Q ss_pred             HHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhhhhccC--CCCCChHHHHHHHHHHHHhhhcCCC---CCCCCCCHHHHh
Q 025227          157 AEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYKGV---SEGSVLEDEYFN  230 (256)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~--~~~~~~~~Wa~Es~~~a~~~vY~~~---~~~~~l~~~Y~~  230 (256)
                      ..+.++..+...|++.|.+.++.+ |+++.+.|..|..  +...||.+|+.||++++|+.||+..   .++.+|+++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~la~~~vY~~~~~~~~~~~l~~~Y~~  239 (270)
T 1ak0_A          160 LIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYD  239 (270)
T ss_dssp             HHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGSSSBCTTHHHH
T ss_pred             hccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHHHHHHHhcccCcccccCCCCCHHHHH
Confidence            655544334667888887777766 8888889987632  3356899999999999999999753   346789999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhC
Q 025227          231 SRLPIVKLRLAQGGVRLAATLNRIFG  256 (256)
Q Consensus       231 ~~~~~~~~ql~~AG~RLA~~Ln~i~~  256 (256)
                      +++|++++||++||+|||.+||.||+
T Consensus       240 ~~~~v~e~qla~aG~RLA~~Ln~i~~  265 (270)
T 1ak0_A          240 SVIDTIELQIAKGGYRLANWINEIHG  265 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999984

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A

Probab=100.00  E-value=3.3e-41  Score=292.48  Aligned_cols=179  Identities=19%  Similarity=0.243  Sum_probs=137.7

Q ss_pred             hhhhccccccccc-cC-CCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHH
Q 025227           28 LGSVCTWADHVKF-HY-HWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTE  105 (256)
Q Consensus        28 ~~~~a~WaD~ik~-~~-~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ai~~~~~~L~~~~~~~~~~~~~~~~~  105 (256)
                      |...|+|||+ |. .+ +++++|||+|+|.+ |++.+.++|.      .+|++.+|.++++.|++.+       ..++.+
T Consensus        47 i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-------~~~~~~  111 (245)
T 1ah7_A           47 LENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA------KETGAKYFKLAGESYKNKD-------MKQAFF  111 (245)
T ss_dssp             HHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH------HHHHHHHHHHHHHHHHTTC-------HHHHHH
T ss_pred             HHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc------chHHHHHHHHHHHHHHcCC-------HHHHHH
Confidence            4445556666 53 23 78999999999875 9988888994      3499999999999999865       237899


Q ss_pred             HHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHH
Q 025227          106 ALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLV  185 (256)
Q Consensus       106 aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  185 (256)
                      +|+||+|||||||||||       |||.+.   +|+.+|||++|| .+++..... +..            ...   .+.
T Consensus       112 aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~~WD-~~i~~~~~~-y~~------------~~~---~~~  164 (245)
T 1ah7_A          112 YLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHSKYE-NFVDTIKDN-YKV------------TDG---NGY  164 (245)
T ss_dssp             HHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHHHHH-HHHHHHGGG-GCC------------CSS---CCC
T ss_pred             HHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchHHHH-HHHHHHhhc-ccc------------cch---HHH
Confidence            99999999999999999       677776   578899999999 788653221 111            000   111


Q ss_pred             HhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHh---------c----hHHHHHHHHHHHHHHHHHHHH
Q 025227          186 KKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFN---------S----RLPIVKLRLAQGGVRLAATLN  252 (256)
Q Consensus       186 ~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~---------~----~~~~~~~ql~~AG~RLA~~Ln  252 (256)
                      ..|.      ..||.+|+.||+++ |..+|+.+..+.. +.+|+.         +    ++|++++||++||+|||.+||
T Consensus       165 ~~~~------~~~~~~W~~Es~~~-a~~~Y~~~~~~~~-~~~Y~~~~~~~~~~~~~~~~~~~v~~~qL~~aG~RLA~~Ln  236 (245)
T 1ah7_A          165 WNWK------GTNPEEWIHGAAVV-AKQDYSGIVNDNT-KDWFVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQ  236 (245)
T ss_dssp             TTCS------CSCHHHHHHHHHHH-HHHTGGGTSSHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh------cCCHHHHHHHHHHH-HHHHhccccCCCc-ccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2232      36999999999999 6679987655544 566763         5    999999999999999999999


Q ss_pred             HhhC
Q 025227          253 RIFG  256 (256)
Q Consensus       253 ~i~~  256 (256)
                      .||+
T Consensus       237 ~i~~  240 (245)
T 1ah7_A          237 LWFD  240 (245)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9983

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=93.35  E-value=0.29  Score=43.93  Aligned_cols=118  Identities=21%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             cHHHHHHHHHHHhhcCCCCCccc--CCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhh
Q 025227          102 NLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT  179 (256)
Q Consensus       102 ~~~~aLk~LiHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~  179 (256)
                      .-.+.|-..+|+|+|+.||+|+.  ..-|.+|              |+..+.-+.... ..+...+ ...      ....
T Consensus       116 ~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~g--------------H~~fE~~V~~~~-~~y~~~t-~g~------~~~~  173 (370)
T 2wxu_A          116 QATFYLGEAMHYFGDIDTPYHPANVTAVDSAG--------------HVKFETFAEERK-EQYKINT-AGC------KTNE  173 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTTTTCCTTTCTH--------------HHHHHHHHHHHG-GGGCCSC-CSS------CTTS
T ss_pred             HHHHHHHHHHHHhhcCCCCcccccccccCCcC--------------HHHHHHHHHHhh-hheeecc-CCc------cccc
Confidence            34688999999999999999995  1112221              777777544321 1111000 000      0000


Q ss_pred             h-hHHHHHhhhhccCCCCCChHHHHHHHHHH----HHhhhcCCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 025227          180 D-WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI  254 (256)
Q Consensus       180 ~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~----a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i  254 (256)
                      . |.+.   +      ...++.+|+.|....    |.+.-|+... ......+|    ..+++.+|..|=..+|..|-..
T Consensus       174 ~~y~~~---~------~~~~~~~Wv~e~ak~~Ak~a~~~Y~~~~~-~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f  239 (370)
T 2wxu_A          174 AFYTDI---L------KNKDFNAWSKEYARGFAKTGKSIYYSHAS-MSHSWDDW----DYAAKVTLANSQKGTAGYIYRF  239 (370)
T ss_dssp             HHHHHH---H------HCSCHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecc---c------ccCCHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            0 1110   1      125788899887774    5542233221 11233455    5566677777777777777654


Q ss_pred             h
Q 025227          255 F  255 (256)
Q Consensus       255 ~  255 (256)
                      |
T Consensus       240 ~  240 (370)
T 2wxu_A          240 L  240 (370)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=90.93  E-value=0.26  Score=44.26  Aligned_cols=117  Identities=17%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCccc--CCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh
Q 025227          103 LTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD  180 (256)
Q Consensus       103 ~~~aLk~LiHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  180 (256)
                      -.+.|-..+|+|+|+.||+|+.  ..-|.+              -|+..+.-+.... ..+...+ ..      ......
T Consensus       117 A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~--------------gH~~yE~~V~~~~-~~y~i~t-~g------~~~~~~  174 (370)
T 1olp_A          117 AAWYLGQGMHYFGDLNTPYHAANVTAVDSP--------------GHVKFETYAEERK-DTYRLDT-TG------YNTDDA  174 (370)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTCCTTTCH--------------HHHHHHHHHHHHG-GGGCCSC-CS------SCTTSH
T ss_pred             HHHHHHHHHHHhhcCCCCcccccccccCCc--------------CHHHHHHHHHHhh-hheeecc-CC------cccccc
Confidence            4688999999999999999995  111111              1776666544321 1110000 00      000000


Q ss_pred             -hHHHHHhhhhccCCCCCChHHHHHHHHHH----HHhhhcCCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 025227          181 -WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  255 (256)
Q Consensus       181 -~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~----a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~  255 (256)
                       |.+   .      ....++.+|+.|....    |.+ .|-..........+|    ..+++++|..|=..+|..|-..|
T Consensus       175 ~y~~---~------~~~~~~~~Wi~e~a~~~Ak~a~~-~Y~~~~~~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~  240 (370)
T 1olp_A          175 FYKD---T------LKNDNFNEWSKGYCKYWAKKAKN-LYYSHATMSNSWDDW----EYAASHGVGNAQKGVAGYLYRFL  240 (370)
T ss_dssp             HHHG---G------GSCSCHHHHHHHHHHHHHHHHHH-HHHHHCSTTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeec---c------cccCCHHHHHHHHHHHHHHHHHH-HHHhcccccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence             000   0      1235788999987764    433 332101111223344    56777888888888888876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1ak0a_	264	a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [	3e-67
d1ah7a_	245	a.124.1.1 (A:) Bacterial phosholipase C {Bacillus	5e-43

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]} Length = 264

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

 Score =  206 bits (526), Expect = 3e-67
 Identities = 75/262 (28%), Positives = 111/262 (42%), Gaps = 22/262 (8%)

Query: 5   QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPD---NLCT 59
           Q  +   AA   + +L  S+ + L S+ +WAD  +      WS++LHFID  D     C 
Sbjct: 14  QHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCN 73

Query: 60  YQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQ 119
             Y RDC         C   AI NYT ++        S S  N  EAL FL HFIGD+ Q
Sbjct: 74  VDYERDCGSSG-----CSISAIANYTQRVSDS-----SLSSENHAEALRFLVHFIGDMTQ 123

Query: 120 PLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT 179
           PLH       GGN I+V +      LH  WD  + +        S+ +     + QNI +
Sbjct: 124 PLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIES 182

Query: 180 D-WADLVKKWETCS--ANNTACPDVYASEGIKAACDWAYKGVS---EGSVLEDEYFNSRL 233
             +      W      +        +AS+     C       +   +   L   Y++S +
Sbjct: 183 GNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDSVI 242

Query: 234 PIVKLRLAQGGVRLAATLNRIF 255
             ++L++A+GG RLA  +N I 
Sbjct: 243 DTIELQIAKGGYRLANWINEIH 264

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]} Length = 245

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

 Score =  144 bits (364), Expect = 5e-43
 Identities = 34/254 (13%), Positives = 69/254 (27%), Gaps = 39/254 (15%)

Query: 5   QSRLREAAADAVKQLLP--ESADNDLGSVCTWADHVKFHY-HWSSALHFIDTPDNLCTYQ 61
              +        +  +        +L +    AD+   +Y + + A HF D  +   TY 
Sbjct: 22  IDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYI 80

Query: 62  YNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPL 121
                  E G K          +     SY +     + + L        H++GD++QP+
Sbjct: 81  PFAKQAKETGAK---------YFKLAGESYKNKDMKQAFFYLG----LSLHYLGDVNQPM 127

Query: 122 HVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDW 181
           H            +    +  Q  H  ++N +    +   Y           +     +W
Sbjct: 128 HAA----------NFTNLSYPQGFHSKYENFVDTIKDN--YKVTDGNGYWNWKGTNPEEW 175

Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
                               Y+   +       +   +      D++     P+   RL 
Sbjct: 176 ---------IHGAAVVAKQDYSGI-VNDNTKDWFVKAAVSQEYADKWRAEVTPMTGKRLM 225

Query: 242 QGGVRLAATLNRIF 255
                 A  +   F
Sbjct: 226 DAQRVTAGYIQLWF 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1ak0a_	264	P1 nuclease {Penicillium citrinum [TaxId: 5077]}	100.0
d1ah7a_	245	Bacterial phosholipase C {Bacillus cereus [TaxId:	100.0
d1ca1a1	249	Alpha-toxin, N-terminal domain {Clostridium perfri	96.61
d1olpa1	249	Alpha-toxin, N-terminal domain {Clostridium absonu	93.16

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

Probab=100.00  E-value=5.6e-68  Score=463.46  Aligned_cols=243  Identities=30%  Similarity=0.488  Sum_probs=210.5

Q ss_pred             hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc--cCCCCCccccccCCC---CCCCcccCCCCccCCCCCCCc
Q 025227            2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPD---NLCTYQYNRDCKDEDGVKGRC   76 (256)
Q Consensus         2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~--~~~~~~~wHy~~~p~---~~~~~~~~~dc~~~~~~~~~c   76 (256)
                      +||+++|+|+++++|++||+.+...+|+++|+|||+||+  .++++.+|||+|+|.   ..|.+.+.++|     +.++|
T Consensus        11 ~iA~~~L~~~~~~~v~~iL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyvn~p~~~~~~~~~~~~~~~-----~~~~~   85 (264)
T d1ak0a_          11 YVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC-----GSSGC   85 (264)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS-----CTTCC
T ss_pred             HHHHHhCCHHHHHHHHHHhCCCCCCCceeeeeChHhhcCCCccchhhccccCCCCCCCCccccccccccC-----CCCcc
Confidence            699999999999999999997767789999999999996  678999999999975   35667777889     56999


Q ss_pred             HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhH
Q 025227           77 VAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIET  156 (256)
Q Consensus        77 vv~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~  156 (256)
                      |++||++++++|++++.+     .+++++|||||||||||||||||++ ..|+|||+++|.|+|+++|||+||||+|+++
T Consensus        86 i~~ai~~~~~~l~~~~~s-----~~~~~~aL~~LvHlvGDiHQPLH~~-~~D~GGN~i~V~~~g~~~NLH~vWDs~~~~~  159 (264)
T d1ak0a_          86 SISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLHSDWDTYMPQK  159 (264)
T ss_dssp             HHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHhhcccccccc-CcCCCCCeeEEEECCccCcHHHHHhhhHHhh
Confidence            999999999999998765     4589999999999999999999987 7899999999999999999999999999988


Q ss_pred             HHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhhhhccCC--CCCChHHHHHHHHHHHHhhhcCCCC---CCCCCCHHHHh
Q 025227          157 AEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSAN--NTACPDVYASEGIKAACDWAYKGVS---EGSVLEDEYFN  230 (256)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~--~~~~~~~Wa~Es~~~a~~~vY~~~~---~~~~l~~~Y~~  230 (256)
                      .+..+.......+++.|.+++... +.++...|..+...  +..+|.+|+.||++++|+++|+...   .+.+|+++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Es~~la~~~~y~~~~~~~~~~~l~~~Y~~  239 (264)
T d1ak0a_         160 LIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYD  239 (264)
T ss_dssp             HHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGSSSBCTTHHHH
T ss_pred             hccccccchHHHHHHHHHHhccccccHHHhhhhhccccccccccCHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHH
Confidence            765544333456778787777654 67778888765432  3468999999999999999887543   34579999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhh
Q 025227          231 SRLPIVKLRLAQGGVRLAATLNRIF  255 (256)
Q Consensus       231 ~~~~~~~~ql~~AG~RLA~~Ln~i~  255 (256)
                      ++++++++||++||+|||.+||+||
T Consensus       240 ~~~~i~~~ql~~AG~RLA~~LN~if  264 (264)
T d1ak0a_         240 SVIDTIELQIAKGGYRLANWINEIH  264 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=7.8e-40  Score=281.68  Aligned_cols=218  Identities=15%  Similarity=0.098  Sum_probs=157.2

Q ss_pred             hhhhhcCCHHHH---HHHHhhCCCCCCCChhhhccccccccccC-CCCCccccccCCCCCCCcccCCCCccCCCCCCCcH
Q 025227            2 LCFQSRLREAAA---DAVKQLLPESADNDLGSVCTWADHVKFHY-HWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCV   77 (256)
Q Consensus         2 ~IA~~~Lt~~a~---~~v~~lL~~~~~~~~~~~a~WaD~ik~~~-~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cv   77 (256)
                      .+|+++|++++.   +.+-++|... ..+|.+.++|||+++..+ .++.+|||+|+|.+ |++....+|      ..+++
T Consensus        19 ~~A~~~L~~d~~~~~~~~~~~l~~y-~~~l~~g~~waD~~~~~~~~~~~~~Hf~~~~~~-~~~~~~~~~------~~~~~   90 (245)
T d1ah7a_          19 NRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYIPFAKQ------AKETG   90 (245)
T ss_dssp             HHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTTSTTTTTTTTCGGGCCBTTTT-BCSSTTCCC------HHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHhcCcCccccccccccccCCceeeeCCCC-CCcCCCCCC------hHHHH
Confidence            578899977653   3333444421 357999999999999744 47899999997655 666554443      35778


Q ss_pred             HHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHH
Q 025227           78 AGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETA  157 (256)
Q Consensus        78 v~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~  157 (256)
                      +..++...+.+++.+..       ...++|++++|||||||||||++          .|.++|..+|||++||+.|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~-------~~~~~l~~~~h~~~d~~qP~H~~----------~v~~~~~~~NLH~~WDs~i~~~~  153 (245)
T d1ah7a_          91 AKYFKLAGESYKNKDMK-------QAFFYLGLSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTIK  153 (245)
T ss_dssp             HHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHTSTTTTT----------TCCTTSSSTTHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHhhcCCCcccc----------ccccCCCCCCcHHHHHhhHHHhh
Confidence            88999988889886533       46789999999999999999997          26678889999999999998653


Q ss_pred             HHhccCCCHHHHHHHHHHhhhhhhHHHHHhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHhchHHHHH
Q 025227          158 EERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVK  237 (256)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~~~~~~~~  237 (256)
                      . .+.......+...+ ....   .+....+..      .++.+|+.||+.+++. +|.....+..++++|..++.|+++
T Consensus       154 ~-~~~~~~~~~~~~~~-~~~~---~~~i~~~~~------~~~~~w~~es~~~~~~-~Y~~~~~~~~l~~~Y~~~~~~~v~  221 (245)
T d1ah7a_         154 D-NYKVTDGNGYWNWK-GTNP---EEWIHGAAV------VAKQDYSGIVNDNTKD-WFVKAAVSQEYADKWRAEVTPMTG  221 (245)
T ss_dssp             G-GGCCCSSCCCTTCS-CSCH---HHHHHHHHH------HHHHTGGGTSSHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHHHHHHh-ccCH---HHHHHHHhh------cCHHHHHHHHHHHHHH-HhccCCCCCCcCHHHHHHHHHHHH
Confidence            1 11110100000000 0000   011111222      3678899999998876 787777777899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q 025227          238 LRLAQGGVRLAATLNRIFG  256 (256)
Q Consensus       238 ~ql~~AG~RLA~~Ln~i~~  256 (256)
                      +||.+||+|||.+||.+|+
T Consensus       222 ~rL~~ag~rlAg~Ln~~Fd  240 (245)
T d1ah7a_         222 KRLMDAQRVTAGYIQLWFD  240 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999984

>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=96.61  E-value=0.013  Score=47.85  Aligned_cols=90  Identities=20%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             ChhhhccccccccccCCCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHHHHHHHHHHhc-cCCCCCCCcccc-cHH
Q 025227           27 DLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL-SYNSASSSHSEY-NLT  104 (256)
Q Consensus        27 ~~~~~a~WaD~ik~~~~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ai~~~~~~L~-~~~~~~~~~~~~-~~~  104 (256)
                      .|..-+.|||.=...|+ +-..||.|...+ .++.....-.-.+ .-.......+..+...-. .....     .+ .-.
T Consensus        47 ~~~~G~~~~D~~~~~y~-~f~~HFy~p~~~-k~~~g~~~~~~~~-~~~~~a~~~~~ky~~~A~~~~~~~-----~~~~a~  118 (249)
T d1ca1a1          47 ELQLGSTYPDYDKNAYD-LYQDHFWDPDTD-NNFSKDNSWYLAY-SIPDTGESQIRKFSALARYEWQRG-----NYKQAT  118 (249)
T ss_dssp             HHHHHHHGGGTCTTCCT-TCGGGCCCTTTC-SSTTTCSCCCCSS-CCCCCHHHHHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred             HHhcCCcCcccCCccCc-ccccccccCCCC-CCccCcccccccc-cccchHHHHHHHHHHHHHHHHHcc-----cHHHHH
Confidence            46678899996554443 345699985332 2332211000000 112234444444443222 11111     11 234


Q ss_pred             HHHHHHHHHhhcCCCCCccc
Q 025227          105 EALLFLSHFIGDIHQPLHVG  124 (256)
Q Consensus       105 ~aLk~LiHlvGDiHQPLH~~  124 (256)
                      +.|-...|+|+|+-||+|++
T Consensus       119 ~~LG~a~Hy~~D~~~P~Ha~  138 (249)
T d1ca1a1         119 FYLGEAMHYFGDIDTPYHPA  138 (249)
T ss_dssp             HHHHHHHHHHHHHTSSTTTT
T ss_pred             HHHHHHHHHHhcCCCccccc
Confidence            77999999999999999986

>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=93.16  E-value=0.017  Score=47.12  Aligned_cols=121  Identities=16%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhH
Q 025227          103 LTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA  182 (256)
Q Consensus       103 ~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  182 (256)
                      -.+.|-...|+|+|+-||+|++       |...|     ..+.|+..++-+-... ..+. ......      ....  .
T Consensus       117 a~~~LG~a~Hy~~D~~qP~Haa-------N~t~v-----~~~~H~~yE~yV~~~~-~~Y~-v~~~g~------~~~~--~  174 (249)
T d1olpa1         117 AAWYLGQGMHYFGDLNTPYHAA-------NVTAV-----DSPGHVKFETYAEERK-DTYR-LDTTGY------NTDD--A  174 (249)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHT-------TCCTT-----TCHHHHHHHHHHHHHG-GGGC-CSCCSS------CTTS--H
T ss_pred             HHHHHHhHhHHhhcCCCCcccc-------ccccc-----ccccHHHHHHHHHhhh-hhhe-eccccc------cccc--c
Confidence            3478999999999999999985       22211     1235777766543211 1110 000000      0000  0


Q ss_pred             HHHHhhhhccCCCCCChHHHHHHHHHHHHhh---hcCCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 025227          183 DLVKKWETCSANNTACPDVYASEGIKAACDW---AYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF  255 (256)
Q Consensus       183 ~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~---vY~~~~~~~~l~~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~  255 (256)
                      .....|      ...+|.+|..|....+...   +|-........    ..+..+++.+.|..|-.=.|..|...|
T Consensus       175 ~~~~~~------~~~~~~ewi~e~a~~~a~~a~~iy~~~~~~~~~----~~~~~~~~~~~L~~Aq~~TAGfi~~f~  240 (249)
T d1olpa1         175 FYKDTL------KNDNFNEWSKGYCKYWAKKAKNLYYSHATMSNS----WDDWEYAASHGVGNAQKGVAGYLYRFL  240 (249)
T ss_dssp             HHHGGG------SCSCHHHHHHHHHHHHHHHHHHHHHHHCSTTSC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc------cCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc----HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            011112      2257888888777665442   23211112122    234567888888888888887777654