Citrus Sinensis ID: 025234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MEEEKHPPADHLHHHHHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVKGKSRRNLFECVCLSGKFQN
cccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEEEEEEccccHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHccccEEEEEcccccccccEEccccHHHHHHHccccccEEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccc
cccccccccccccccccccEEEEccccccccEEEcccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccEEcccccccHHHHHHccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccEEEEEcccccc
meeekhppadhlhhhhhhsvqycsarimsPEIVEIgedhsrsigaasrdaaASDVYVAVGKDDLHVLKWALDhavspgarIYLVHVfspvtyintpvgrLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLvmgtklsprsrlftkklskgefvkknapdycevtivhdgkkvvdgQKVAEaelarssspspsspgtgrpqvkgksrrnlFECVCLSGKFQN
meeekhppadhlhhhhHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRvyvneennrrrNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSlvmgtklsprsrlftkklskgefvkknapdyceVTIVHDGKKVVDGQKVAEAelarssspspsspgtgrpqvkgksrrnLFECVCLSGKFQN
MEEEKHPPADhlhhhhhhSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLnqeqvrvyvneennrrrnllqKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARssspspsspGTGRPQVKGKSRRNLFECVCLSGKFQN
**************************************************AASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVV************************************************
*******************************************************YVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVG*********E*******EENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPR*R*****LSKGEFVKKNAPDYCEVTIVHDGK*******************************************CLSGKF**
**********************CSARIMSPEIVEIGEDHSRSI********ASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAE*************************RRNLFECVCLSGKFQN
*****HPPADHLHHHHHHSVQYCSARIMSPEIVEIGE*************AASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQK*****************************RNLFECVCLSGK***
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEEKHPPADHLHHHHHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVKGKSRRNLFECVCLSGKFQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q8GUH1 834 U-box domain-containing p no no 0.644 0.197 0.271 2e-12
Q8GZ84 435 U-box domain-containing p no no 0.527 0.310 0.305 5e-10
Q9FKG6 845 U-box domain-containing p no no 0.539 0.163 0.314 7e-10
Q9LQ92 308 U-box domain-containing p no no 0.691 0.574 0.297 2e-08
Q9SW11 835 U-box domain-containing p no no 0.539 0.165 0.272 2e-07
Q683D5 400 U-box domain-containing p no no 0.488 0.312 0.253 2e-06
Q9FGD7 765 Putative U-box domain-con no no 0.480 0.160 0.254 4e-05
P0C6E7 568 Putative U-box domain-con no no 0.617 0.278 0.247 5e-05
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2 Back     alignment and function desciption
 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 19/184 (10%)

Query: 55  VYVAVGKDDLHVLK------WALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
           ++VAV K   HV K      WAL +  + G +I L+HV  P   I     +     + +E
Sbjct: 47  IFVAVDK---HVAKSKSTLIWALQN--TGGKKICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMG 168
           +VRV+  +E  +   +L  Y+R+C    V  E M +E ++    I+ LIS   +  LVMG
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161

Query: 169 TKLSPRSRLFTKKLS-----KGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSS 223
              +   R ++++++     K  FV++ AP  C++     G  +   +   +   +  +S
Sbjct: 162 ---AAADRHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYAS 218

Query: 224 PSPS 227
           P PS
Sbjct: 219 PRPS 222
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1 Back     alignment and function description
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function description
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1 Back     alignment and function description
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
255540535315 ATP binding protein, putative [Ricinus c 0.937 0.761 0.643 2e-84
449440638239 PREDICTED: U-box domain-containing prote 0.917 0.983 0.636 4e-80
359491215240 PREDICTED: U-box domain-containing prote 0.933 0.995 0.614 2e-79
224121762234 predicted protein [Populus trichocarpa] 0.914 1.0 0.611 2e-78
224135933236 predicted protein [Populus trichocarpa] 0.917 0.995 0.605 4e-78
147863738230 hypothetical protein VITISV_010065 [Viti 0.792 0.882 0.646 1e-71
449445772240 PREDICTED: U-box domain-containing prote 0.859 0.916 0.607 1e-69
449523760342 PREDICTED: U-box domain-containing prote 0.746 0.558 0.664 3e-66
356564962305 PREDICTED: uncharacterized protein LOC10 0.832 0.698 0.524 3e-54
224089553289 predicted protein [Populus trichocarpa] 0.742 0.657 0.381 2e-31
>gi|255540535|ref|XP_002511332.1| ATP binding protein, putative [Ricinus communis] gi|223550447|gb|EEF51934.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/258 (64%), Positives = 196/258 (75%), Gaps = 18/258 (6%)

Query: 1   MEEEKHPPADHLHHHHHHSVQYC-SARIMSPEIVEIGEDHSRSIGAASRDAAAS-DVYVA 58
           MEEEK   A  ++     S QYC SARIMS EIVEIG+D SRSI A+SRD     DVYVA
Sbjct: 1   MEEEKPSCALPVN-----STQYCNSARIMSSEIVEIGDD-SRSI-ASSRDGGCFLDVYVA 53

Query: 59  VGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEEN 118
           VGKDDLHVLKWALD AVSPG R++LVHVF P+TYI TPVGRL+RSQL+Q+QVR Y+NEE+
Sbjct: 54  VGKDDLHVLKWALDRAVSPGTRVFLVHVFPPITYIPTPVGRLSRSQLSQDQVRFYINEEH 113

Query: 119 NRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLF 178
           NRRR++LQKYIRLCNDAKVTV+TML+ES  TAKAILDLI V N+T+LVMGT   PRSRL 
Sbjct: 114 NRRRSILQKYIRLCNDAKVTVDTMLIESNETAKAILDLIPVLNITNLVMGTTRPPRSRLL 173

Query: 179 TKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVKG 238
            K+L+K EFVKKNAPDYCEVT+VHD KK+ + ++V  + L+ S         T RP +  
Sbjct: 174 RKRLAKAEFVKKNAPDYCEVTVVHDEKKIAESKEVVHSSLSSS---------TRRPDITR 224

Query: 239 KSRRNLFECVCLSGKFQN 256
            S R  FECVC S +F +
Sbjct: 225 NSDRKFFECVCFSSRFNS 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440638|ref|XP_004138091.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] gi|449522187|ref|XP_004168109.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359491215|ref|XP_003634243.1| PREDICTED: U-box domain-containing protein 54-like [Vitis vinifera] gi|297733717|emb|CBI14964.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121762|ref|XP_002318666.1| predicted protein [Populus trichocarpa] gi|222859339|gb|EEE96886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224135933|ref|XP_002322197.1| predicted protein [Populus trichocarpa] gi|222869193|gb|EEF06324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147863738|emb|CAN79356.1| hypothetical protein VITISV_010065 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445772|ref|XP_004140646.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523760|ref|XP_004168891.1| PREDICTED: U-box domain-containing protein 52-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564962|ref|XP_003550714.1| PREDICTED: uncharacterized protein LOC100816919 [Glycine max] Back     alignment and taxonomy information
>gi|224089553|ref|XP_002308753.1| predicted protein [Populus trichocarpa] gi|222854729|gb|EEE92276.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.589 0.191 0.267 8.8e-08
TAIR|locus:2198190 308 PUB54 "plant U-box 54" [Arabid 0.566 0.470 0.268 6.3e-06
TAIR|locus:2098816 435 AT3G61390 [Arabidopsis thalian 0.535 0.314 0.283 6.9e-06
TAIR|locus:2050669 834 AT2G45910 [Arabidopsis thalian 0.632 0.194 0.270 3.1e-05
TAIR|locus:504954932 789 AT5G57035 [Arabidopsis thalian 0.527 0.171 0.292 6.5e-05
TAIR|locus:2149244 394 AT5G20310 "AT5G20310" [Arabido 0.558 0.362 0.251 0.00016
TAIR|locus:2117343 835 AT4G25160 [Arabidopsis thalian 0.539 0.165 0.244 0.00035
TAIR|locus:2050659 400 AT2G45920 [Arabidopsis thalian 0.273 0.175 0.333 0.00037
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 146 (56.5 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 41/153 (26%), Positives = 64/153 (41%)

Query:    55 VYVAVGKD--DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLXXXXXXX 112
             V VA+ KD    H LKWA+D+ +  G  + LVHV    + +N      A S         
Sbjct:    20 VAVAIDKDKSSQHALKWAVDNLLQRGQSVILVHVKLRPSPLNNSASLHASSAKLSQDSSL 79

Query:   113 XXXXXXXXXXXXXXKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS 172
                            +   C    +  + +L+E    AKA+++ ++ A +  LV+G+   
Sbjct:    80 VCRDPEGISKEIFLPFRCFCTRKDIQCQDVLLEESDVAKALVEYVNQAAIEVLVVGSSSK 139

Query:   173 PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205
                  F K       + KNAPD+C V I+  GK
Sbjct:   140 GGFLRFNKPTDIPGSITKNAPDFCTVYIISKGK 172
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0002238 "response to molecule of fungal origin" evidence=RCA
TAIR|locus:2198190 PUB54 "plant U-box 54" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149244 AT5G20310 "AT5G20310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050659 AT2G45920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 1e-29
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 3e-10
pfam00582139 pfam00582, Usp, Universal stress protein family 2e-05
COG0589154 COG0589, UspA, Universal stress protein UspA and r 0.003
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score =  108 bits (272), Expect = 1e-29
 Identities = 53/152 (34%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 55  VYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRV 112
           V VAV KD    + LKWALD+  + G  I LVHV  P+T I +  G         E    
Sbjct: 2   VAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASA 54

Query: 113 YVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS 172
           Y  EE+   + LL  Y   C+   V  E +++E    AKAI++ ++   +T LVMG    
Sbjct: 55  YKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD 114

Query: 173 PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204
               +  KK      V K APD+C V +V  G
Sbjct: 115 NHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.94
PRK15456142 universal stress protein UspG; Provisional 99.91
PRK15005144 universal stress protein F; Provisional 99.9
PRK09982142 universal stress protein UspD; Provisional 99.89
PRK15118144 universal stress global response regulator UspA; P 99.88
PRK10116142 universal stress protein UspC; Provisional 99.86
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.86
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.85
PRK11175 305 universal stress protein UspE; Provisional 99.85
cd01987124 USP_OKCHK USP domain is located between the N-term 99.84
PRK11175305 universal stress protein UspE; Provisional 99.77
cd00293130 USP_Like Usp: Universal stress protein family. The 99.75
COG0589154 UspA Universal stress protein UspA and related nuc 99.75
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.45
PRK10490 895 sensor protein KdpD; Provisional 99.23
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.07
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.08
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.78
PLN03159832 cation/H(+) antiporter 15; Provisional 96.12
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 95.61
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 94.32
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 93.75
PRK12342254 hypothetical protein; Provisional 92.86
PRK03359256 putative electron transfer flavoprotein FixA; Revi 92.04
COG2086260 FixA Electron transfer flavoprotein, beta subunit 90.25
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 88.22
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 85.43
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 82.78
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 81.96
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 81.4
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 81.15
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 80.95
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 80.73
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.94  E-value=1.9e-25  Score=180.35  Aligned_cols=144  Identities=37%  Similarity=0.577  Sum_probs=118.7

Q ss_pred             eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234           54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL  131 (256)
Q Consensus        54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~  131 (256)
                      +||||+|+|+  ..||+||+++|...+++|++|||.++........+.       .+....+.+..++.+++.|+++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGK-------LEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccc-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999  999999999999999999999999864322211110       1122334455667778889999888


Q ss_pred             hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234          132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG  204 (256)
Q Consensus       132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~  204 (256)
                      +...+++++..++.|+++.++|+++|++.++|+||||+|+++++.++|++||++.+|++++++.||||||++|
T Consensus        74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~~  146 (146)
T cd01989          74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG  146 (146)
T ss_pred             HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeCc
Confidence            8778999999999887789999999999999999999999998887775447999999999999999999875

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 3e-11
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 5e-06
3olq_A 319 Universal stress protein E; structural genomics, P 8e-06
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 1e-05
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 5e-05
3fdx_A143 Putative filament protein / universal stress PROT; 7e-05
3fg9_A156 Protein of universal stress protein USPA family; A 8e-05
3tnj_A150 Universal stress protein (USP); structural genomic 1e-04
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 1e-04
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 4e-04
3s3t_A146 Nucleotide-binding protein, universal stress PROT 4e-04
3loq_A294 Universal stress protein; structural genomics, PSI 6e-04
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 65  HVLKWALDHAVSPG---ARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRR 121
              +W L+  V       +I L+HV          V  +  S  +   +R     +    
Sbjct: 29  RAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK---G 85

Query: 122 RNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTK-LSPRSRLFTK 180
            +LL+ ++  C++  V  E  +         I   +       LV+G++ L    ++F  
Sbjct: 86  LHLLEFFVNKCHEIGVGCEAWIKTGDP-KDVICQEVKRVRPDFLVVGSRGLGRFQKVF-- 142

Query: 181 KL-SKGEFVKKNAPDYCEVTIVHDGKK 206
            + +   F  K+A   C V  +     
Sbjct: 143 -VGTVSAFCVKHAE--CPVMTIKRNAD 166
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.92
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.92
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.9
3fg9_A156 Protein of universal stress protein USPA family; A 99.9
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.9
3dlo_A155 Universal stress protein; unknown function, struct 99.9
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.9
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.89
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.89
3tnj_A150 Universal stress protein (USP); structural genomic 99.89
2z08_A137 Universal stress protein family; uncharacterized c 99.88
3fdx_A143 Putative filament protein / universal stress PROT; 99.87
3olq_A 319 Universal stress protein E; structural genomics, P 99.85
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.84
3loq_A294 Universal stress protein; structural genomics, PSI 99.83
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.81
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.81
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.8
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.79
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.78
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.77
3loq_A294 Universal stress protein; structural genomics, PSI 99.77
3olq_A319 Universal stress protein E; structural genomics, P 99.77
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.66
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 90.51
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 89.13
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 87.03
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 81.89
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.92  E-value=1.7e-24  Score=172.18  Aligned_cols=141  Identities=15%  Similarity=0.238  Sum_probs=118.3

Q ss_pred             CCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234           49 DAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ  126 (256)
Q Consensus        49 ~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~  126 (256)
                      ++.+++||||+|+|+  ..|++||+.+|...+++|++|||+++........+         .....+.+...+.+++.|+
T Consensus         2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~   72 (146)
T 3s3t_A            2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALD---------PVLSELLDAEAAHAKDAMR   72 (146)
T ss_dssp             CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGH---------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc---------cccHHHHHHHHHHHHHHHH
Confidence            367999999999999  99999999999999999999999997542211100         0123344566777888999


Q ss_pred             HHHHHhhcCCC-cEEEEEEEcCChHHHHHH-HhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234          127 KYIRLCNDAKV-TVETMLVESKATAKAILD-LISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH  202 (256)
Q Consensus       127 ~~~~~~~~~gv-~v~~~lv~g~~v~eaIl~-~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~  202 (256)
                      ++.+.+...|+ +++..+..|+ +.++|++ ++++.++||||||+++++.+.+++ .||++++|+++++  |||||||
T Consensus        73 ~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~-~Gs~~~~vl~~~~--~pVlvV~  146 (146)
T 3s3t_A           73 QRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA-VGSTTSYVVDHAP--CNVIVIR  146 (146)
T ss_dssp             HHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS-SCHHHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceEE-EcchHHHHhccCC--CCEEEeC
Confidence            99998888899 9999888885 6999999 999999999999999998888776 4999999999999  9999996
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 6e-08
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 0.004
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.1 bits (116), Expect = 6e-08
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 10/161 (6%)

Query: 49  DAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
           +A+    Y           +W L+  V      + + +             +     + E
Sbjct: 9   NASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPE 68

Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMG 168
             R        +  +LL+ ++  C++  V  E  +         I   +       LV+G
Sbjct: 69  DFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDP-KDVICQEVKRVRPDFLVVG 127

Query: 169 TKLSPRSRLFTKKL---SKGEFVKKNAPDYCEVTIVHDGKK 206
           +    R     +K+   +   F  K+A   C V  +     
Sbjct: 128 S----RGLGRFQKVFVGTVSAFCVKHAE--CPVMTIKRNAD 162
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.94
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.92
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.91
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.89
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.86
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.82
d3clsc1262 Small, beta subunit of electron transfer flavoprot 92.15
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 90.56
d1efpb_246 Small, beta subunit of electron transfer flavoprot 89.96
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 89.41
d1efvb_252 Small, beta subunit of electron transfer flavoprot 84.67
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 82.63
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2e-26  Score=185.31  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCcc-----ccccccccCHHHHHHHHHHHHHHHH
Q 025234           50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPV-----GRLARSQLNQEQVRVYVNEENNRRR  122 (256)
Q Consensus        50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~-----g~~~~~~~~~e~~~~~~~~~~~~a~  122 (256)
                      +.|++||||+|+|+  ++|++||+.+|+..+++|+|+||+++........     +........++....+.+...++++
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            46899999999999  9999999999999999999999998753221110     1001111223334445566677788


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234          123 NLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH  202 (256)
Q Consensus       123 ~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~  202 (256)
                      +.|+++...+...|++++..+..| .+.++|++++++.++||||||+|+++.+.++|+ ||++++|+++++  |||||||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~-GS~a~~vl~~s~--~pVlvV~  156 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILL-GSVTENVIKKSN--KPVLVVK  156 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSS-CHHHHHHHHHCC--SCEEEEC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEec-cHHHHHhhhhhccccceEEeccCCCCccccccc-CcHHHHHHhcCC--CCEEEEc
Confidence            899999998988999999999988 569999999999999999999999998888774 999999999999  9999999


Q ss_pred             CC
Q 025234          203 DG  204 (256)
Q Consensus       203 ~~  204 (256)
                      +.
T Consensus       157 ~~  158 (160)
T d1mjha_         157 RK  158 (160)
T ss_dssp             CC
T ss_pred             CC
Confidence            74
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure