Citrus Sinensis ID: 025237

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAASS
ccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHcccccccccccEEcccHHHHHHHHHccccEEccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEccccccccccHHHcccccccHcccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEcccccccccccccccccccccccccccEccccEccHHHHHHHHHHHccccccccccHHccccHHHHHHHHHHHHcccccccccccEEEEccccccccccHcccccc
MKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGkkvcikgwecptwskfccnetISDYFQVYQFEnffskrntpvahavgfwdyqSFITATvkyqplgfgttgtkLDKMKEICAFLAHVgcktscgygvatggplawglcynhemspsqsycddsykytypctpgaeyygrgaipiywnynygatgeALKADLvcgqgdidamNNIVSHYLYYLDLLgvgreqagpneelscaeqkafnpntapsaass
MKMKNGSVAMTLTVALVLALAVslangdesekVIVKklkgkkvcikgwecptwskfCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELscaeqkafnpntapsaass
MKMKNGsvamtltvalvlalavslaNGDESEkvivkklkgkkvcikgWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAASS
*******VAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVG*****************************
*****GS*AMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNP*********
MKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN**********
**MKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN**********
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAASS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q9MA41321 Chitinase-like protein 1 yes no 0.773 0.616 0.686 4e-81
Q9LSP9333 Chitinase-like protein 2 no no 0.699 0.537 0.718 4e-78
P85084243 Endochitinase OS=Carica p N/A no 0.546 0.576 0.406 2e-25
Q05537246 Basic endochitinase (Frag N/A no 0.589 0.613 0.410 1e-24
P19171335 Basic endochitinase B OS= no no 0.531 0.405 0.392 4e-24
Q09023322 Endochitinase CH25 OS=Bra N/A no 0.531 0.422 0.392 2e-23
P36361327 Endochitinase CH5B OS=Pha N/A no 0.800 0.626 0.330 2e-23
Q5NB11290 Chitinase 10 OS=Oryza sat no no 0.492 0.434 0.410 4e-23
P06215328 Endochitinase OS=Phaseolu N/A no 0.542 0.423 0.4 9e-23
Q39799324 Endochitinase 1 OS=Gossyp N/A no 0.496 0.391 0.424 2e-22
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 165/201 (82%), Gaps = 3/201 (1%)

Query: 1   MKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNE 60
           + +++GS+   + V L ++    +ANG E + + VKK++G KVC +GWEC  WSK+CCN+
Sbjct: 2   VTIRSGSI--VILVLLAVSFLALVANG-EDKTIKVKKVRGNKVCTQGWECSWWSKYCCNQ 58

Query: 61  TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 120
           TISDYFQVYQFE  FSKRNTP+AHAVGFWDYQSFITA   ++PLGFGTTG KL   KE+ 
Sbjct: 59  TISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMA 118

Query: 121 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 180
           AFL HV  KTSCGYGVATGGPLAWGLCYN EMSP QSYCD+S+K+ YPC+PGAEYYGRGA
Sbjct: 119 AFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKYPCSPGAEYYGRGA 178

Query: 181 IPIYWNYNYGATGEALKADLV 201
           +PIYWN+NYGA GEALKADL+
Sbjct: 179 LPIYWNFNYGAAGEALKADLL 199
No chitinase activity. Essential for normal plant growth and development. Regulates cell expansion extent and differentiation at least in roots and hypocotyls. Prevents lignin accumulation in the pith. May modulate ethylene-mediated regulation during development. Probably required to establish thermotolerance acclimation. Plays a role for controlled anisotropic cell expansion in the regulation of waving during root gravitropism and thigmotropism. Involved in the root system architecture adaptation to multiple environmental conditions such as nitrate. Contributes to salt tolerance and possibly to drought by preventing the overaccumulation of sodium ions.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LSP9|CTL2_ARATH Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1 Back     alignment and function description
>sp|P85084|CHIT_CARPA Endochitinase OS=Carica papaya PE=1 SV=1 Back     alignment and function description
>sp|Q05537|CHID_SOLLC Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1 Back     alignment and function description
>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3 Back     alignment and function description
>sp|Q09023|CHI2_BRANA Endochitinase CH25 OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P36361|CHI5_PHAVU Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1 Back     alignment and function description
>sp|Q5NB11|CHI10_ORYSJ Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1 Back     alignment and function description
>sp|P06215|CHIT_PHAVU Endochitinase OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|Q39799|CHI1_GOSHI Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
255549220321 chitinase, putative [Ricinus communis] g 0.742 0.591 0.742 9e-83
225433728316 PREDICTED: chitinase-like protein 2 [Vit 0.683 0.553 0.8 2e-81
34016877316 chitinase-like protein [Gossypium hirsut 0.746 0.604 0.740 3e-81
34016875318 chitinase-like protein [Gossypium hirsut 0.734 0.591 0.728 4e-80
119657124316 CLT4 [Gossypium barbadense] 0.746 0.604 0.735 5e-80
119657122316 CLT3 [Gossypium barbadense] 0.726 0.588 0.741 7e-80
297848858321 pom-pom1 [Arabidopsis lyrata subsp. lyra 0.773 0.616 0.686 7e-80
224131456295 predicted protein [Populus trichocarpa] 0.679 0.589 0.788 1e-79
118488092319 unknown [Populus trichocarpa] 0.683 0.548 0.788 1e-79
225897882321 hypothetical protein [Arabidopsis thalia 0.773 0.616 0.686 2e-79
>gi|255549220|ref|XP_002515664.1| chitinase, putative [Ricinus communis] gi|223545207|gb|EEF46716.1| chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 165/190 (86%)

Query: 12  LTVALVLALAVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQF 71
           +  AL++A    L NGD+SEK +VK ++GKKVC +GWEC +WS++CCN+TISD+FQ YQF
Sbjct: 10  IIAALLVANWGLLTNGDDSEKTVVKMVRGKKVCTRGWECASWSEYCCNQTISDFFQTYQF 69

Query: 72  ENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTS 131
           EN FSKRN PVAHA+GFWDYQSFITA+  +QPLGF TTG KL +MKE+ AF +HVG KTS
Sbjct: 70  ENLFSKRNAPVAHAIGFWDYQSFITASALFQPLGFCTTGGKLMQMKELAAFFSHVGSKTS 129

Query: 132 CGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGA 191
           CGYGVATGGPLA+GLCYN EMSPSQSYCDD YK+TYPCTPGAEYYGRGA+PIYWNYNYGA
Sbjct: 130 CGYGVATGGPLAYGLCYNREMSPSQSYCDDFYKFTYPCTPGAEYYGRGALPIYWNYNYGA 189

Query: 192 TGEALKADLV 201
           TGEALK +L+
Sbjct: 190 TGEALKVNLL 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433728|ref|XP_002269474.1| PREDICTED: chitinase-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|34016877|gb|AAQ56599.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|34016875|gb|AAQ56598.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|119657124|gb|ABL86686.1| CLT4 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|119657122|gb|ABL86685.1| CLT3 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|297848858|ref|XP_002892310.1| pom-pom1 [Arabidopsis lyrata subsp. lyrata] gi|297338152|gb|EFH68569.1| pom-pom1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224131456|ref|XP_002321089.1| predicted protein [Populus trichocarpa] gi|222861862|gb|EEE99404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488092|gb|ABK95866.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225897882|dbj|BAH30273.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2198688321 POM1 "POM-POM1" [Arabidopsis t 0.601 0.479 0.792 1.6e-96
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.476 0.448 0.444 1.2e-28
TAIR|locus:2133412280 AT4G01700 [Arabidopsis thalian 0.492 0.45 0.403 1.6e-24
UNIPROTKB|Q9FRV1321 rsca "Basic endochitinase A" [ 0.546 0.436 0.386 2.9e-23
UNIPROTKB|Q7DNA1340 Cht2 "Chitinase 2" [Oryza sati 0.546 0.411 0.372 3.8e-23
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.585 0.563 0.361 7.8e-23
UNIPROTKB|P24626320 Cht3 "Chitinase 3" [Oryza sati 0.546 0.437 0.376 4.9e-21
UNIPROTKB|P25765326 Cht12 "Chitinase 12" [Oryza sa 0.546 0.429 0.371 8e-21
UNIPROTKB|Q42993323 Cht1 "Chitinase 1" [Oryza sati 0.546 0.433 0.353 3.5e-20
UNIPROTKB|O04138285 Cht4 "Chitinase 4" [Oryza sati 0.437 0.392 0.378 2.7e-18
TAIR|locus:2198688 POM1 "POM-POM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 720 (258.5 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
 Identities = 122/154 (79%), Positives = 135/154 (87%)

Query:    48 WECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFG 107
             WEC  WSK+CCN+TISDYFQVYQFE  FSKRNTP+AHAVGFWDYQSFITA   ++PLGFG
Sbjct:    46 WECSWWSKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFG 105

Query:   108 TTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTY 167
             TTG KL   KE+ AFL HV  KTSCGYGVATGGPLAWGLCYN EMSP QSYCD+S+K+ Y
Sbjct:   106 TTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKY 165

Query:   168 PCTPGAEYYGRGAIPIYWNYNYGATGEALKADLV 201
             PC+PGAEYYGRGA+PIYWN+NYGA GEALKADL+
Sbjct:   166 PCSPGAEYYGRGALPIYWNFNYGAAGEALKADLL 199
GO:0004568 "chitinase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0009408 "response to heat" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0009809 "lignin biosynthetic process" evidence=IGI
GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP
GO:0010167 "response to nitrate" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0030244 "cellulose biosynthetic process" evidence=IMP
GO:0030247 "polysaccharide binding" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=IMP;RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016051 "carbohydrate biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|O04138 Cht4 "Chitinase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9MA41CTL1_ARATHNo assigned EC number0.68650.77340.6168yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 4e-55
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 3e-35
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-06
smart0057163 smart00571, DDT, domain in different transcription 0.003
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information 
 Score =  176 bits (449), Expect = 4e-55
 Identities = 62/135 (45%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 66  FQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAH 125
                FE  FS RN     A GF+ Y +FITA   +   GFGTTG    + +EI AF AH
Sbjct: 1   VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAH 58

Query: 126 VGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 185
              +T  G  +A  GP AWG C   E  P  SYCD +    +PC PG +YYGRG I + W
Sbjct: 59  TSHETGGGCYIAPDGPYAWGYCDKSETGPPSSYCDPA---QWPCAPGKKYYGRGPIQLSW 115

Query: 186 NYNYGATGEALKADL 200
           NYNYG  G+AL  DL
Sbjct: 116 NYNYGPAGKALGFDL 130

Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG4742286 consensus Predicted chitinase [General function pr 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
COG3179206 Predicted chitinase [General function prediction o 99.52
cd00442105 lysozyme_like lysozyme_like domain. This contains 98.98
PF0018740 Chitin_bind_1: Chitin recognition protein; InterPr 95.38
smart0027038 ChtBD1 Chitin binding domain. 93.57
cd0003540 ChtBD1 Chitin binding domain, involved in recognit 86.79
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-63  Score=450.40  Aligned_cols=211  Identities=41%  Similarity=0.719  Sum_probs=193.0

Q ss_pred             HHHhhCCCCcchhhhhhccCCcCCCCCCCCCCCCccccCCCcccccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhh
Q 025237           21 AVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVK  100 (256)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~g~~~c~~~~ccs~~~~yc~~~~v~~iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~  100 (256)
                      +..++..++.....++...++..|..| +|++++++|++..|+++||++||++||++++...|++++||||++||.|++.
T Consensus        22 ~~~~~~~q~~~~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~s  100 (286)
T KOG4742|consen   22 SSSTVASQNCGASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARS  100 (286)
T ss_pred             HHHhhhcccCCCCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHh
Confidence            344555444323336778899999999 9999999999999999999999999999999998999999999999999999


Q ss_pred             cCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCCccccccceeeccCC-CCCCCCCCCCCCCCCCCCCccccCC
Q 025237          101 YQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRG  179 (256)
Q Consensus       101 f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G~~~wglcy~~E~~~-~~~YC~~~~~~~yPC~pGk~Y~GRG  179 (256)
                      ||  +|+++|+..+.||||||||||++|||++||..+++|++.|+|||++|+.. ...||+.+++..|||++||.|||||
T Consensus       101 fp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG  178 (286)
T KOG4742|consen  101 FP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRG  178 (286)
T ss_pred             cc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcccccC
Confidence            99  99999999999999999999999999999999999999999999999998 7899999864339999999999999


Q ss_pred             ccccccccchHHHHhhhcCCc----------------------------------------------------cCCCCC-
Q 025237          180 AIPIYWNYNYGATGEALKADL----------------------------------------------------VCGQGD-  206 (256)
Q Consensus       180 pIQLSwNyNYg~ag~aLg~DL----------------------------------------------------ECg~g~-  206 (256)
                      +||||||||||+||++|++||                                                    ||++++ 
T Consensus       179 ~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~  258 (286)
T KOG4742|consen  179 PIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWMTPVRPVLNDFAAYDTPGFGATTRAINGDLECGGGNL  258 (286)
T ss_pred             cccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeeccCCchhhhhhhcccCCCcchhhhhhccceeccCCCC
Confidence            999999999999999999998                                                    999887 


Q ss_pred             chhHHHHHHHHHHHHHHhCCCCcCCCCCCCCCc
Q 025237          207 IDAMNNIVSHYLYYLDLLGVGREQAGPNEELSC  239 (256)
Q Consensus       207 ~~~~~~RI~~Yk~yc~~lGV~~e~~G~~~nL~C  239 (256)
                      ++.+++||+||++||++|||+   |||  ||+|
T Consensus       259 ~~~~~~Ri~~y~~~c~~fGv~---pG~--nLsC  286 (286)
T KOG4742|consen  259 DGVKARRIKYYLAYCGLFGVN---PGP--NLSC  286 (286)
T ss_pred             CcchhHHHHHHHHHHHhhCCC---CCC--CCCC
Confidence            556667999999999999999   995  4999

>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e Back     alignment and domain information
>smart00270 ChtBD1 Chitin binding domain Back     alignment and domain information
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 3e-27
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 9e-22
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 1e-21
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 2e-21
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 1e-20
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 2e-20
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 2e-20
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 3e-20
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 1e-19
2dkv_A309 Crystal Structure Of Class I Chitinase From Oryza S 5e-18
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 5e-16
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 6e-11
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 3e-09
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 3e-09
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 62  ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 121
           I        F+     RN P   A GF+ Y +FI A   +    FGTTG+   + +EI A
Sbjct: 2   IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 122 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 181
           FL     +T+ G+  A  GP AWG C+  E +PS +YC  S +Y  PC PG  YYGRG I
Sbjct: 60  FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPI 117
Query: 182 PIYWNYNYGATGEALKADLVCGQGDIDAMNNIVS 215
            + WNYNYG  GEAL+ +L+ G  D+ A + ++S
Sbjct: 118 QLSWNYNYGPCGEALRVNLL-GNPDLVATDRVIS 150
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
2z37_A244 Chitinase; family 19, conformational changes, hydr 3e-35
2z37_A244 Chitinase; family 19, conformational changes, hydr 1e-08
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 2e-33
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 1e-07
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 5e-32
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 8e-07
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 6e-26
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 3e-21
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 8e-08
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 3e-20
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 2e-16
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  125 bits (314), Expect = 3e-35
 Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 62  ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 121
           +S      QF       N    HAVGF+ Y +FITA   +    FG TG    + KEI A
Sbjct: 2   LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAA 59

Query: 122 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 181
           F      +T+ G+  A  G   WG CY  E+  S  +CD +    +PC PG  YYGRG +
Sbjct: 60  FFGQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNL-EWPCAPGKFYYGRGPM 118

Query: 182 PIYWNYNYGATGEALKADLV 201
            + WNYNYG  G  L  +L+
Sbjct: 119 MLSWNYNYGPCGRDLGLELL 138
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 96.12
1mmc_A30 AC-AMP2, antimicrobial peptide 2; antifungal antim 95.59
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 95.37
2kus_A35 SM-AMP-1.1A; plant antimicrobial peptide, chitin-b 94.65
1p9g_A41 EAFP 2; antifungal peptide, atomic resolution, ant 92.41
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 87.24
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 86.84
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 81.94
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 80.95
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
Probab=100.00  E-value=1.4e-68  Score=480.28  Aligned_cols=175  Identities=38%  Similarity=0.777  Sum_probs=170.2

Q ss_pred             CcccccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCC
Q 025237           61 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGG  140 (256)
Q Consensus        61 ~v~~iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G  140 (256)
                      +|++|||+++||+||||||+..||+++||||++||+|+++||  +|++||+++++|||||||||||+|||+|||.+||+|
T Consensus         2 ~v~~ivt~~~f~~~~~~rn~~~c~~~~fYty~~fi~Aa~~fp--~F~~tg~~~~~krElAaFlA~~~hET~gg~~~a~~g   79 (242)
T 3w3e_A            2 EVGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFA--AFGTTGDSNTRKREVAAFLAQTSHETTGGAATSPDG   79 (242)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSSCTTCSCHHHHHHHHHTST--TTTCSSSHHHHHHHHHHHHHHHHHHTCCCCTTSTTC
T ss_pred             chHhhCCHHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhhh--hhcCCCCchhhHHHHHHHHhhcccccCCCcccCCCC
Confidence            699999999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             ccccccceeeccCCCCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCCc--------------------
Q 025237          141 PLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADL--------------------  200 (256)
Q Consensus       141 ~~~wglcy~~E~~~~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~DL--------------------  200 (256)
                      |++|||||+||+++...||+    .+|||++|++|||||+|||||||||+++|++|+.||                    
T Consensus        80 ~~~wg~~~~~E~~~~~~YC~----~~~Pc~dG~~Y~GRG~IQLTg~~NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA~w  155 (242)
T 3w3e_A           80 PYAWGYCFVTERDKSNRYCD----GSGPCSAGKSYYGRGPIQLTHNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALW  155 (242)
T ss_dssp             GGGCTTCCSBCSCCSCCCCC----SSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHH
T ss_pred             ccceEEEEeecccCcccccc----cCCCCCCCCceecCCcccCCcHHHHHHHHHHhCCccccCHHHHhhCHHHHHHHHHh
Confidence            99999999999998889998    269999999999999999999999999999999998                    


Q ss_pred             ----------------------------------------------cCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCCC
Q 025237          201 ----------------------------------------------VCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPN  234 (256)
Q Consensus       201 ----------------------------------------------ECg~g~~~~~~~RI~~Yk~yc~~lGV~~e~~G~~  234 (256)
                                                                    ||++++..++++||+||++||++|||+   ||  
T Consensus       156 fW~t~~~~kps~h~vi~g~w~p~~aD~~agr~~gfg~tt~iINGGlECg~~~~~~~~dRi~~Y~r~~~~Lgv~---~G--  230 (242)
T 3w3e_A          156 FWMTPQGNKPSCHDVITNRWTPSAADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVS---YG--  230 (242)
T ss_dssp             HHHCCBTTBCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCC---CC--
T ss_pred             hheeCCCCCCchhhhhhccCCCccchhhhcccCChhhheeeecCccccCCCCchHHHHHHHHHHHHHHHhCCC---CC--
Confidence                                                          999999999999999999999999999   99  


Q ss_pred             CCCCcccCcccC
Q 025237          235 EELSCAEQKAFN  246 (256)
Q Consensus       235 ~nL~C~~q~pf~  246 (256)
                      +||+|++||||+
T Consensus       231 ~nl~C~~q~~f~  242 (242)
T 3w3e_A          231 PNLNCRDQRPFG  242 (242)
T ss_dssp             SCCCCTTCCCCC
T ss_pred             CCcCcccCCCCC
Confidence            889999999996
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Back     alignment and structure
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Back     alignment and structure
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media} Back     alignment and structure
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 1e-40
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 7e-08
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 1e-39
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  138 bits (348), Expect = 1e-40
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 61  TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 120
           ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ 
Sbjct: 1   SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58

Query: 121 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 180
           AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG  YYGRG 
Sbjct: 59  AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116

Query: 181 IPIYWNYNYGATGEALKADLV 201
           I +  NYNYG  G A+  DL+
Sbjct: 117 IQLSHNYNYGPAGRAIGVDLL 137
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
d1q9ba_43 Hevein {Hevea brasiliensis [TaxId: 3981]} 95.62
d9wgaa234 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 95.14
d9wgaa343 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.95
d1mmca_30 Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth 94.63
d1en2a145 Isolectin VI {Stinging nettle (Urtica dioica), UDA 94.5
d9wgaa442 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.39
d9wgaa152 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.27
d1uhaa142 Lectin-D {American pokeweed (Phytolacca americana) 94.25
d1ulka241 Lectin-C {American pokeweed (Phytolacca americana) 94.16
d1uhaa240 Lectin-D {American pokeweed (Phytolacca americana) 93.62
d1en2a241 Isolectin VI {Stinging nettle (Urtica dioica), UDA 87.49
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.5e-64  Score=452.77  Aligned_cols=177  Identities=39%  Similarity=0.832  Sum_probs=171.6

Q ss_pred             CcccccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCC
Q 025237           61 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGG  140 (256)
Q Consensus        61 ~v~~iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G  140 (256)
                      +|++|||+++||+|||||+++.||+++||||++||+|+++||  +|+++|+.+++||||||||||++|||+++|..+|++
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp--~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~   78 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDG   78 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTST--TTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTC
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhch--hhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCC
Confidence            589999999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             ccccccceeeccCCCCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCCc--------------------
Q 025237          141 PLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADL--------------------  200 (256)
Q Consensus       141 ~~~wglcy~~E~~~~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~DL--------------------  200 (256)
                      +++||||+++|+++...||+++  .+|||++|++|||||||||||||||+++|++|+.||                    
T Consensus        79 ~~~~g~~~~~e~~~~~~yc~~~--~~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~w  156 (243)
T d2baaa_          79 AFAWGYCFKQERGASSDYCTPS--AQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIW  156 (243)
T ss_dssp             GGGCTTCCSBCCSCCCCCCCCC--SSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHH
T ss_pred             chhhcccchhccCCccccccCC--CCCCCCCCCcccCCCcccccchhhHHHHHHHhCCCccccccceeeccHHHHHHHHH
Confidence            9999999999999989999975  379999999999999999999999999999999998                    


Q ss_pred             ----------------------------------------------cCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCCC
Q 025237          201 ----------------------------------------------VCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPN  234 (256)
Q Consensus       201 ----------------------------------------------ECg~g~~~~~~~RI~~Yk~yc~~lGV~~e~~G~~  234 (256)
                                                                    ||++++++++++||+|||+||++|||+   ||  
T Consensus       157 fW~t~~~~~~s~~~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~ec~~~~~~~~~dRi~~Y~~~~~~lgv~---~g--  231 (243)
T d2baaa_         157 FWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVG---YG--  231 (243)
T ss_dssp             HHHCCCTTSCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCC---CC--
T ss_pred             HHhcCCCCCccHHHHHhccCCcccchhhhccCCCcceEEEEEECcccCCCCCchHHHHHHHHHHHHHHHhCCC---CC--
Confidence                                                          999999999999999999999999999   89  


Q ss_pred             CCCCcccCcccC
Q 025237          235 EELSCAEQKAFN  246 (256)
Q Consensus       235 ~nL~C~~q~pf~  246 (256)
                      +||+|++|+||.
T Consensus       232 ~nl~C~~q~~f~  243 (243)
T d2baaa_         232 NNLDCYSQRPFA  243 (243)
T ss_dssp             SCCCCTTSCCCC
T ss_pred             CCcCCcCCCCCC
Confidence            889999999994
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1en2a2 g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (Urtica dioica), UDA [TaxId: 3501]} Back     information, alignment and structure