Citrus Sinensis ID: 025240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPERETNSNDSRSQLGVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccHHccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTgklfefsssgmkrTLSRYNKCLDFSEVAVAEYKtekqdskevDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEElrgffpptecsvpayleyyplgrknslmnhssatpdvasdgavekgdsdttlhlglpsnlyhkrkaperetnsndsrsqlgvl
Flexible Loop (DISEMBL)
mgrgkieikrienansrqvtfsKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEyktekqdskevdgLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELrgffpptecsvPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSdttlhlglpsnlyhkrkaperetnsndsrsqlgvl
Low Complexity Region (SEG)
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDlnglslkelqlleqdlneglllvkekkekllmeqleQSRVQEQRAMLENETLRRQVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPERETNSNDSRSQLGVL
Disordered region (IsUnstruct)
************************RAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEY****************IAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVK********************************EELRGFFPPTECSVPAYLEYYPLG*************************************************************
Disordered Region (DISOPRED)
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYN*********************EVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQV****************************************************TLHLGL************************G*L
Disordered Region (DISEMBL)
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYK**********GLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKR*******************
Disordered Region (DISPRO)
*****IEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFF***********************************GAVEKGDSDTTLHLGLPSNL***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTxxxxxxxxxxxxxxxxxxxxxQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQxxxxxxxxxxxxxxxxxxxxxVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPERETNSNDSRSQLGVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q38847	268	Agamous-like MADS-box pro	yes	no	0.921	0.876	0.582	2e-70
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.917	0.886	0.589	4e-66
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.937	0.933	0.440	4e-44
Q6EU39	250	MADS-box transcription fa	yes	no	0.843	0.86	0.4	6e-36
Q7XUN2	249	MADS-box transcription fa	no	no	0.658	0.674	0.471	6e-35
Q0DEB8	225	MADS-box transcription fa	no	no	0.682	0.773	0.491	1e-34
A2Y9P0	225	MADS-box transcription fa	N/A	no	0.682	0.773	0.491	1e-34
Q0J466	249	MADS-box transcription fa	no	no	0.674	0.690	0.494	1e-34
P0C5B0	249	MADS-box transcription fa	N/A	no	0.674	0.690	0.494	1e-34
P29386	252	Agamous-like MADS-box pro	no	no	0.619	0.626	0.481	6e-34

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/249 (58%), Positives = 183/249 (73%), Gaps = 14/249 (5%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRIENANSRQVTFSKRR+GLLKKA+EL++LCDAEVAVI+FS +GKLFE+SS+
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GMK+TLSRY      S  + AE     +D  EVD LKD+++KLQ K L+L GK LN L+ 
Sbjct: 61  GMKQTLSRYGN-HQSSSASKAE-----EDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTF 114

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LEQ L   L+ V+E+KE+LL  QLE+SR++EQRA LENETLRRQV+ELR F P  
Sbjct: 115 KELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELRSFLPSF 174

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKR-KAP 239
              VP+Y++ + +  KN+L+NH S         +++  DSDTTL LGLP   + +R    
Sbjct: 175 THYVPSYIKCFAIDPKNALINHDSKC-------SLQNTDSDTTLQLGLPGEAHDRRTNEG 227

Query: 240 ERETNSNDS 248
           ERE+ S+DS
Sbjct: 228 ERESPSSDS 236

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score =  251 bits (640), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 141/239 (58%), Positives = 176/239 (73%), Gaps = 5/239 (2%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRIENANSRQVTFSKRRAGLLKKA EL++LCDAEVAVI+FS +GKLFEFSS+
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSST 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQ-DSKEVDGLKDEIAKLQMKQLRLLGKDLNGLS 119
            MK+TL RY      S+V     KTE Q +  EVD LKDEI+ LQ K L + GK LN LS
Sbjct: 61  SMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLS 120

Query: 120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPP 179
           LKELQ LE+ LN  L+ V+E+KE LL +QLE+SR++EQRA LENETLRRQV+ELR F P 
Sbjct: 121 LKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELRSFLPS 180

Query: 180 -TECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRK 237
             +   P+Y+  + +  KNSL+++ +   D+  + +++  +SDTTL LGLP   +  RK
Sbjct: 181 INQHYAPSYIRCFAIDPKNSLLSN-TCLGDI--NCSLQNTNSDTTLQLGLPGEAHDTRK 236

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/268 (44%), Positives = 166/268 (61%), Gaps = 29/268 (10%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG+IEIK+IEN NSRQVTFSKRR GL+KKA+EL+ILCDAEVA+IIFS+TGK+++FSS 
Sbjct: 1   MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDS-------------KEVDGLKDEIAKLQMKQ 107
            M++ LSRY         A  E+K +++               +  D +K E+ +LQ+  
Sbjct: 61  CMEQILSRYGYT-----TASTEHKQQREHQLLICASHGNEAVLRNDDSMKGELERLQLAI 115

Query: 108 LRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLR 167
            RL GK+L G+S  +L  LE  LNE L  VK++K ++L+ Q+E+SR+QE++A+ EN+ LR
Sbjct: 116 ERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILR 175

Query: 168 RQVEEL-RGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHL 226
           +QVE L RG       S P  L   P  + +S      ++     +   E+  SDT+L L
Sbjct: 176 KQVEMLGRG-------SGPKVLNERP--QDSSPEADPESSSSEEDENDNEEHHSDTSLQL 226

Query: 227 GLPSNLY-HKRKAPERETNSNDSRSQLG 253
           GL S  Y  KRK P+ E   ++S SQ+ 
Sbjct: 227 GLSSTGYCTKRKKPKIELVCDNSGSQVA 254

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 135/240 (56%), Gaps = 25/240 (10%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG++E+KRIEN  +RQVTFSKRR GLLKKA EL++LCDAEVA+IIFS+ GKL+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           G+ +TL RY  C   ++ +       +    E+  LK +   LQ  Q  LLG+DL  LS+
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LE+ L   L   +++K +L+MEQ+E+ R +E++    N  L+ ++E         
Sbjct: 121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLE--------V 172

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAV--------EKGDSDTTLHLGLPSNL 232
           E S   Y          ++   S A   V  +GA            DS+ TL +G P   
Sbjct: 173 EGSTSNY---------RAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQF 223

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 8/176 (4%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG++E+KRIEN  +RQVTFSKRR GLLKKA EL++LCDAEVA+IIFS+ GKL+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  GMKRTLSRYNKCL-----DFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDL 115
           G+ +TL +YN C        S +A  E+++  Q   E+  LK ++  LQ  Q  +LG+DL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQ---EMSRLKTKLECLQRSQRHMLGEDL 117

Query: 116 NGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVE 171
             LS+KELQ LE+ L   L   +++K +++MEQ++  R +E++    N+ L+ ++E
Sbjct: 118 GPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLE 173

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DEB8|MADS5_ORYSJ MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 5/179 (2%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFS-S 59
           MGRGK+E+KRIEN  SRQVTF+KRR GLLKKA EL++LCDAEVA+IIFS  G+LFEFS S
Sbjct: 1   MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60

Query: 60  SGMKRTLSRYNKC---LDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLN 116
           S M +TL RY  C   L+  E + A  +TE  + +E   LK  +  LQ  Q  LLG+DL 
Sbjct: 61  SCMYKTLERYRSCNYNLNSCEASAA-LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLV 119

Query: 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175
            LSLKEL+ LE  +   L+ ++  K + L++Q+ + + +EQ+    N+ L+R+++E  G
Sbjct: 120 PLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSG 178

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y9P0|MADS5_ORYSI MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 5/179 (2%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFS-S 59
           MGRGK+E+KRIEN  SRQVTF+KRR GLLKKA EL++LCDAEVA+IIFS  G+LFEFS S
Sbjct: 1   MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60

Query: 60  SGMKRTLSRYNKC---LDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLN 116
           S M +TL RY  C   L+  E + A  +TE  + +E   LK  +  LQ  Q  LLG+DL 
Sbjct: 61  SCMYKTLERYRSCNYNLNSCEASAA-LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLV 119

Query: 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175
            LSLKEL+ LE  +   L+ ++  K + L++Q+ + + +EQ+    N+ L+R+++E  G
Sbjct: 120 PLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSG 178

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 4/176 (2%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKL+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  -GMKRTLSRYNKC-LDFSEVAVAEYKTE--KQDSKEVDGLKDEIAKLQMKQLRLLGKDLN 116
             M +TL +Y KC     E AV   ++E  K    E   LK  +  LQ  Q  LLG+DL+
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172
            L +KEL+ LE+ L+  L  V+  + K L++QL + + +EQ     N  LRR++EE
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 176

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 4/176 (2%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKL+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  -GMKRTLSRYNKC-LDFSEVAVAEYKTE--KQDSKEVDGLKDEIAKLQMKQLRLLGKDLN 116
             M +TL +Y KC     E AV   ++E  K    E   LK  +  LQ  Q  LLG+DL+
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172
            L +KEL+ LE+ L+  L  V+  + K L++QL + + +EQ     N  LRR++EE
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 176

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 109/158 (68%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRG++E+KRIEN  +RQVTFSKRR GLLKKA EL++LCDAEVA+IIFS+ GKL+EF S 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           G++ T+ RYN+C + S       +T +   +EV  LK +   L      LLG+DL  + +
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQR 158
           KELQ LE+ L   L   +++K +++ME++E  R +E++
Sbjct: 121 KELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQ 158

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
342161739	254	MADS-box protein AGL15 [Dimocarpus longa	0.996	1.0	0.843	1e-121
52789958	254	MADS9 protein [Gossypium hirsutum]	0.996	1.0	0.772	1e-106
449464022	246	PREDICTED: agamous-like MADS-box protein	0.964	1.0	0.737	2e-99
291170380	213	MADS-box protein AGL15 [Dimocarpus longa	0.835	1.0	0.813	2e-96
359487231	253	PREDICTED: LOW QUALITY PROTEIN: agamous-	0.988	0.996	0.710	5e-91
296085099	248	unnamed protein product [Vitis vinifera]	0.968	0.995	0.721	2e-90
224106151	271	predicted protein [Populus trichocarpa]	0.890	0.837	0.729	3e-87
421958010	278	MADS-box protein AGL15 [Aquilegia coerul	0.972	0.892	0.656	1e-83
89574428	269	MADS-box protein 9 [Petunia x hybrida]	0.988	0.936	0.593	3e-78
351723725	235	AGL15 protein [Glycine max] gi|38326710|	0.874	0.948	0.668	4e-78

>gi|342161739|gb|AEL16646.1| MADS-box protein AGL15 [Dimocarpus longan]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/255 (84%), Positives = 241/255 (94%), Gaps = 1/255 (0%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVI+FSNTGKLFEFSSS
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSSS 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GMKRTLSRYNKCL+F+E AVAE+K EKQ++KEV+GLKDEI KLQ KQLRLLGKDLNGLSL
Sbjct: 61  GMKRTLSRYNKCLNFTETAVAEHKAEKQNTKEVNGLKDEITKLQAKQLRLLGKDLNGLSL 120

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQLLEQ+LN+GLLLVKEKKE+LLMEQLEQSR+QEQ+A+LENETLRRQVEELRGFFP T
Sbjct: 121 KELQLLEQELNDGLLLVKEKKEQLLMEQLEQSRLQEQQAVLENETLRRQVEELRGFFPST 180

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPE 240
           +CSVP +LEY PL R+N+LMNH SA+PD+ASD A++KGDSDTTL LG P++ YHKRKAPE
Sbjct: 181 DCSVPTFLEYCPLQRRNALMNH-SASPDIASDSAIDKGDSDTTLQLGPPTDNYHKRKAPE 239

Query: 241 RETNSNDSRSQLGVL 255
            ET+S+DSRSQLG+L
Sbjct: 240 GETHSHDSRSQLGLL 254

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52789958|gb|AAU87582.1| MADS9 protein [Gossypium hirsutum]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/255 (77%), Positives = 221/255 (86%), Gaps = 1/255 (0%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRIENANSRQVTFSKRRAGLLKKA+ELAILCDAEVAVIIFSNTGKLFEFSSS
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFEFSSS 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GM +T+SRY       E+A  E+K EKQDSKE D LKDEIAKLQMKQL+LLGK+L  +SL
Sbjct: 61  GMNKTISRYKSAQGSPEIAQVEHKAEKQDSKEADHLKDEIAKLQMKQLQLLGKNLTSMSL 120

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQLLEQ LNEGLL VKEKKE+LLM+QLEQSR+QEQRAMLENETLRRQVEELRGFFP T
Sbjct: 121 KELQLLEQQLNEGLLSVKEKKEQLLMQQLEQSRLQEQRAMLENETLRRQVEELRGFFPTT 180

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPE 240
           +  +  YLE YP+ RKNSLM+HS  +PD+  +  VEKGDSDTTL+LGLPS+ YHKRK PE
Sbjct: 181 DHPIQPYLECYPVERKNSLMSHSIPSPDLTCNCTVEKGDSDTTLYLGLPSD-YHKRKKPE 239

Query: 241 RETNSNDSRSQLGVL 255
            E++SN+S SQLG+L
Sbjct: 240 IESHSNESESQLGLL 254

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464022|ref|XP_004149728.1| PREDICTED: agamous-like MADS-box protein AGL15-like [Cucumis sativus]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/255 (73%), Positives = 213/255 (83%), Gaps = 9/255 (3%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GMK TL+RYNKC++ S+  V  +K E     EVD L++EI  LQMKQL+LLGKDL GL  
Sbjct: 61  GMKHTLARYNKCVESSDATVDVHKVE-----EVDILREEITTLQMKQLQLLGKDLTGLGF 115

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LEQ LNEGLLLVKEKKE+LLMEQLEQSRVQEQRAMLENETLRRQV ELR  FPP 
Sbjct: 116 KELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVNELRCLFPPV 175

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPE 240
           +C +PAYLEY  L +KN  +     +PD+A +  +E+GDSDTTLHLGLPS++Y KRK  E
Sbjct: 176 DCPLPAYLEYCSLEQKNIGIR----SPDMACNSEIERGDSDTTLHLGLPSHVYCKRKESE 231

Query: 241 RETNSNDSRSQLGVL 255
           R+T+SNDS +Q+G+L
Sbjct: 232 RDTHSNDSGAQMGIL 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291170380|gb|ADD82424.1| MADS-box protein AGL15 [Dimocarpus longan]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/214 (81%), Positives = 200/214 (93%), Gaps = 1/214 (0%)

Query: 42  EVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIA 101
           EVAVI+FSNTGKLFEFSSSGMKRTLSRYNKCL+F+E AVAE+K EKQ++KEV+GLKDEI 
Sbjct: 1   EVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLNFTETAVAEHKAEKQNTKEVNGLKDEIT 60

Query: 102 KLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAML 161
           KLQ KQLRLLGKDLNGLSLKELQLLEQ+LN+GLLLVKEKKE+LLMEQLEQSR+QEQ+A+L
Sbjct: 61  KLQAKQLRLLGKDLNGLSLKELQLLEQELNDGLLLVKEKKEQLLMEQLEQSRLQEQQAVL 120

Query: 162 ENETLRRQVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSD 221
           ENETLRRQVEELRGFFP T+CSVP +LEY PL R+N+LMNH SA+PD+ASD A++KGDSD
Sbjct: 121 ENETLRRQVEELRGFFPSTDCSVPTFLEYCPLQRRNALMNH-SASPDIASDSAIDKGDSD 179

Query: 222 TTLHLGLPSNLYHKRKAPERETNSNDSRSQLGVL 255
           TTL LG P++ YHKRKAPE ET+S+DSRSQLG+L
Sbjct: 180 TTLQLGPPTDNYHKRKAPEGETHSHDSRSQLGLL 213

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487231|ref|XP_003633540.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL15-like [Vitis vinifera]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 182/256 (71%), Positives = 210/256 (82%), Gaps = 4/256 (1%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIK+IENANSRQVTFSKRR GLLKKA ELAILCDA+V VIIFSNTGKLFEFSS+
Sbjct: 1   MGRGKIEIKKIENANSRQVTFSKRRVGLLKKASELAILCDAQVGVIIFSNTGKLFEFSST 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
            MKR +SRYNK LD SE A+ EYK E Q+ KEVD LKDEI KLQ +QL+LLGKDL+GLSL
Sbjct: 61  SMKRIISRYNK-LDSSEGALVEYKAE-QEPKEVDILKDEIRKLQTRQLQLLGKDLSGLSL 118

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LEQ LNE LL VKE+KE++LMEQLEQSRVQEQRA+LENETLRRQVEELRG  P +
Sbjct: 119 KELQNLEQQLNESLLSVKERKEQVLMEQLEQSRVQEQRAVLENETLRRQVEELRGLVPSS 178

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPE 240
           +  VP +LEY+PL RK+S+      +PDV  D AVE+ +SDTTL LGLP+ +  KRKAP 
Sbjct: 179 DRLVPPFLEYHPLERKDSITKSVVISPDVC-DFAVEREESDTTLQLGLPTEISRKRKAPA 237

Query: 241 R-ETNSNDSRSQLGVL 255
           + ET SN+S S + +L
Sbjct: 238 KMETRSNNSGSXIHLL 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085099|emb|CBI28594.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 207/251 (82%), Gaps = 4/251 (1%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIK+IENANSRQVTFSKRR GLLKKA ELAILCDA+V VIIFSNTGKLFEFSS+
Sbjct: 1   MGRGKIEIKKIENANSRQVTFSKRRVGLLKKASELAILCDAQVGVIIFSNTGKLFEFSST 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
            MKR +SRYNK LD SE A+ EYK E Q+ KEVD LKDEI KLQ +QL+LLGKDL+GLSL
Sbjct: 61  SMKRIISRYNK-LDSSEGALVEYKAE-QEPKEVDILKDEIRKLQTRQLQLLGKDLSGLSL 118

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LEQ LNE LL VKE+KE++LMEQLEQSRVQEQRA+LENETLRRQVEELRG  P +
Sbjct: 119 KELQNLEQQLNESLLSVKERKEQVLMEQLEQSRVQEQRAVLENETLRRQVEELRGLVPSS 178

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNLYHKRKAPE 240
           +  VP +LEY+PL RK+S+      +PDV  D AVE+ +SDTTL LGLP+ +  KRKAP 
Sbjct: 179 DRLVPPFLEYHPLERKDSITKSVVISPDVC-DFAVEREESDTTLQLGLPTEISRKRKAPA 237

Query: 241 R-ETNSNDSRS 250
           + ET SN+S S
Sbjct: 238 KMETRSNNSGS 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106151|ref|XP_002314062.1| predicted protein [Populus trichocarpa] gi|222850470|gb|EEE88017.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/244 (72%), Positives = 191/244 (78%), Gaps = 17/244 (6%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIK+IEN NSRQVTFSKRRAGLLKKAQELAILCDAEVAVI+FSNTGKLFEFSSS
Sbjct: 1   MGRGKIEIKKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSSS 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTE-------------KQDSKEVDGLKDEIAKLQMKQ 107
           GMKRTLSRYNK LD  E    EYK E             K D KEVD LK+EIAKLQ+KQ
Sbjct: 61  GMKRTLSRYNKFLDSPEQPKIEYKAEDHCPPQPPTQIKDKPDLKEVDVLKEEIAKLQVKQ 120

Query: 108 LRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLR 167
           LRL G DL GLSLKELQ LE  LNEGLL VKEKKE LLMEQLEQSRVQEQRAMLENETLR
Sbjct: 121 LRLSGMDLTGLSLKELQQLENQLNEGLLFVKEKKEHLLMEQLEQSRVQEQRAMLENETLR 180

Query: 168 RQ---VEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHSSATPDVASD-GAVEKGDSDTT 223
           RQ   +EELRGFFP T+  VP YLEYY   RKN  +++ + +P VA    ++EK DSDTT
Sbjct: 181 RQARIIEELRGFFPSTDHPVPTYLEYYATERKNPPIDNGATSPPVAHYICSIEKVDSDTT 240

Query: 224 LHLG 227
           LHLG
Sbjct: 241 LHLG 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421958010|gb|AFX72882.1| MADS-box protein AGL15 [Aquilegia coerulea]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/250 (65%), Positives = 196/250 (78%), Gaps = 2/250 (0%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIK+IENA SRQVTFSKRRAGL+KKAQEL+ILCDAEVA+IIFSNTGKLFEFSSS
Sbjct: 22  MGRGKIEIKKIENATSRQVTFSKRRAGLIKKAQELSILCDAEVALIIFSNTGKLFEFSSS 81

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GMKRTLSRYNK  D S+ ++ +Y TEKQ SKEV  LK+E++KL+M  LR++GK+L GLS 
Sbjct: 82  GMKRTLSRYNKSQDLSDNSLVQYDTEKQHSKEVTVLKEEVSKLRMAHLRMMGKELTGLSF 141

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LE  LNEG+L VK +KE+LLMEQLE SR+QE RAM+EN +LR+QVEELR   P  
Sbjct: 142 KELQHLENQLNEGILSVKGRKEQLLMEQLENSRLQEHRAMVENGSLRQQVEELRSMLPVA 201

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSS-ATPDVASDGAVEK-GDSDTTLHLGLPSNLYHKRKA 238
           E  V  YLE +   RK S   H   ++ +   +  VEK G+SDT+LHLGL S ++ KRKA
Sbjct: 202 ELPVRPYLELHHTERKPSHTKHDVISSSNAGCNCIVEKPGESDTSLHLGLSSEVHRKRKA 261

Query: 239 PERETNSNDS 248
           PER + SNDS
Sbjct: 262 PERASCSNDS 271

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89574428|gb|ABD77426.1| MADS-box protein 9 [Petunia x hybrida]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/268 (59%), Positives = 203/268 (75%), Gaps = 16/268 (5%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKI+IK IEN N+RQVTFSKRRAGLLKKA EL++LCDAEVAVIIFS+TGKLFEFSS+
Sbjct: 1   MGRGKIDIKLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTGKLFEFSST 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTE-------------KQDSKEVDGLKDEIAKLQMKQ 107
            MK+TLSRYN+CL  +E +  E K E             KQ+ KE+D LKDE++KL+M Q
Sbjct: 61  SMKQTLSRYNRCLASTETSAREKKLEDNEQPQPLQTYVPKQEQKEMDILKDELSKLKMDQ 120

Query: 108 LRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLR 167
           LRLLGKDL+G+ L EL+LLE  LNEGLL +K++KE+LL++QLEQSR QE+RA LE+ETLR
Sbjct: 121 LRLLGKDLSGMGLNELRLLEHQLNEGLLAIKDRKEELLIQQLEQSRRQEERAALESETLR 180

Query: 168 RQVEELRGFFPPTECSVPAYLEYYPLGRKNSLMNHS--SATPDVASDGAVEKGDSDTTLH 225
           RQ+EELRG FP +    P+YLEY+PL +K  ++     S   D A +  V+  DS+TTL 
Sbjct: 181 RQLEELRGLFPLSTSLPPSYLEYHPLEQKYPILKEGEESLDSDTACEDGVDDEDSNTTLQ 240

Query: 226 LGLPSNLYHKRKAPERETNSNDSRSQLG 253
           LGLP  +  KRK PE+++ S++S +Q+G
Sbjct: 241 LGLPI-VGRKRKKPEQDSPSSNSENQVG 267

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723725|ref|NP_001237033.1| AGL15 protein [Glycine max] gi|38326710|gb|AAR17483.1| AGL15 [Glycine max] gi|38326712|gb|AAR17484.1| AGL15 [Glycine max]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 184/232 (79%), Gaps = 9/232 (3%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           MGRGKIEIKRI+NA+SRQVTFSKRR GL KKAQEL+ILCDAEVAVI+FSNTGKLFEFSSS
Sbjct: 1   MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSS 60

Query: 61  GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSL 120
           GMKRTLSRYNKCL  ++ AVAE KT+K+DSK V+ L++EIAKL+ KQL+L+GKDL GL L
Sbjct: 61  GMKRTLSRYNKCLGSTDAAVAEIKTQKEDSKMVEILREEIAKLETKQLQLVGKDLTGLGL 120

Query: 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRGFFPPT 180
           KELQ LEQ LNEGLL VK +K       LEQSRVQEQR MLENETLRRQ+EELR  FP +
Sbjct: 121 KELQNLEQQLNEGLLSVKARK-------LEQSRVQEQRVMLENETLRRQIEELRCLFPQS 173

Query: 181 ECSVPAYLEYYPLGRKNSLMNHSSATPDVASDGAVEKGDSDTTLHLGLPSNL 232
           E  VP   +Y     KN+ ++  +   ++A++   EKG SDT+ HLGLP+ +
Sbjct: 174 ESMVP--FQYQHTEGKNTFVDTGARYLNLANNCGNEKGSSDTSFHLGLPAGV 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.419	0.399	0.681	6.9e-53
TAIR|locus:2082613	256	AGL18 "AGAMOUS-like 18" [Arabi	0.443	0.441	0.520	8.1e-35
UNIPROTKB|Q0DEB8	225	MADS5 "MADS-box transcription	0.443	0.502	0.567	2.5e-28
TAIR|locus:2143261	262	SEP1 "SEPALLATA1" [Arabidopsis	0.447	0.435	0.577	4.1e-28
UNIPROTKB|Q9ATF2	246	FBP5 "MADS-box transcription f	0.443	0.459	0.529	8.4e-28
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.447	0.473	0.555	1.1e-27
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.447	0.461	0.560	1.4e-27
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.447	0.454	0.563	2.2e-27
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.447	0.530	0.508	7.4e-27
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.443	0.461	0.517	9.4e-27

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 77/113 (68%), Positives = 92/113 (81%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
             MGRGKIEIKRIENANSRQVTFSKRR+GLLKKA+EL++LCDAEVAVI+FS +GKLFE+SS+
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

Query:    61 GMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGK 113
             GMK+TLSRY      S  + AE     +D  EVD LKD+++KLQ K L+L GK
Sbjct:    61 GMKQTLSRYGNHQS-SSASKAE-----EDCAEVDILKDQLSKLQEKHLQLQGK 107

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2082613 AGL18 "AGAMOUS-like 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 64/123 (52%), Positives = 85/123 (69%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
             MGRG+IEIK+IEN NSRQVTFSKRR GL+KKA+EL+ILCDAEVA+IIFS+TGK+++FSS 
Sbjct:     1 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query:    61 GMKRTLSRYNKCLDFSE---------VAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLL 111
              M++ LSRY      +E         +  A +  E     + D +K E+ +LQ+   RL 
Sbjct:    61 CMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRND-DSMKGELERLQLAIERLK 119

Query:   112 GKD 114
             GK+
Sbjct:   120 GKE 122

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q0DEB8 MADS5 "MADS-box transcription factor 5" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 293 (108.2 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 67/118 (56%), Positives = 83/118 (70%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
             MGRGK+E+KRIEN  SRQVTF+KRR GLLKKA EL++LCDAEVA+IIFS  G+LFEFS+S
Sbjct:     1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60

Query:    61 G-MKRTLSRYNKC---LDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
               M +TL RY  C   L+  E + A  +TE  + +E   LK  +  LQ  Q  LLG+D
Sbjct:    61 SCMYKTLERYRSCNYNLNSCEASAA-LETELSNYQEYLKLKTRVEFLQTTQRNLLGED 117

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143261 SEP1 "SEPALLATA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 67/116 (57%), Positives = 81/116 (69%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SS 59
             MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKL+EF SS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 SGMKRTLSRYNKCLDFS-EVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
             S M +TL RY KC   S EV     K  +   +E   LK     LQ +Q  LLG+D
Sbjct:    61 SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGED 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=IDA

UNIPROTKB|Q9ATF2 FBP5 "MADS-box transcription factor FBP5" [Petunia x hybrida (taxid:4102)]

 Score = 278 (102.9 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 63/119 (52%), Positives = 85/119 (71%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS- 59
             MGRG++E+K+IEN  +RQVTF+KRR GLLKKA EL++LC+AEVA+IIFSN GKL+EFSS 
Sbjct:     1 MGRGRVELKKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFSST 60

Query:    60 SGMKRTLSRYNKC----LDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
             S M +TL RY KC    L+ +  +V +   E++  +E   LK +   LQ  Q +LLG +
Sbjct:    61 SNMVKTLDRYQKCSYGTLEVNHRSVKD-NNEERIYREYLKLKAKYESLQRYQRQLLGDE 118

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 286 (105.7 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 65/117 (55%), Positives = 80/117 (68%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SS 59
             MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKL+EF SS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 SGMKRTLSRYNKC-LDFSEVAVAEYKT-EKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
             S M +TL RY KC     E  ++  +  E    +E   LK     LQ  Q  LLG+D
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGED 117

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 287 (106.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 65/116 (56%), Positives = 80/116 (68%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SS 59
             MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKLFEF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    60 SGMKRTLSRYNKCLDFS-EVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
             S M + L RY  C   S EV  +    E+   KE   LK +   LQ  Q +L G+D
Sbjct:    61 SNMLKMLERYQNCTYGSMEVDRSTPNAEQSSYKEYMKLKAKYESLQQYQRQLFGED 116

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 67/119 (56%), Positives = 80/119 (67%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SS 59
             MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFSN GKL+EF SS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 SGMKRTLSRYNKC-LDFSEVAVAEYKT---EKQDSKEVDGLKDEIAKLQMKQLRLLGKD 114
             S M RTL RY KC     E  V   +    E    +E   LK+    LQ  Q  LLG+D
Sbjct:    61 SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGED 119

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 258 (95.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
             M RGK +++RIENA SRQVTFSKRR GLLKKA EL++LCDAEV++IIFS  GKL+EFSSS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 GMKRTLSRYNK-CLDFSEVAVAEYKTEKQDSK-EVDGLKDEIAKLQMKQLRLLGKD 114
              M+  + RY +   D      A  +   Q+ K +   L  +I  L+  + +LLG+D
Sbjct:    61 SMQEIIERYRRHSEDVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGED 116

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 278 (102.9 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 60/116 (51%), Positives = 83/116 (71%)

Query:     1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SS 59
             MGRG++E+KRIEN  +RQVTF+KRR GLLKKA EL++LCDAEVA+IIFS+ GKL+EF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    60 SGMKRTLSRYNKCLDFSEVAVAEYKTEKQDS-KEVDGLKDEIAKLQMKQLRLLGKD 114
             S M +TL +Y +C  ++ +   +   + Q++  E   LK  +  LQ  Q  LLG+D
Sbjct:    61 SSMMKTLEKYQQC-SYASLDPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGED 115

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6EU39	MADS6_ORYSJ	No assigned EC number	0.4	0.8431	0.86	yes	no
Q38847	AGL15_ARATH	No assigned EC number	0.5823	0.9215	0.8768	yes	no
Q39295	AGL15_BRANA	No assigned EC number	0.5899	0.9176	0.8863	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-43
smart00432	59	smart00432, MADS, MADS domain	7e-34
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-32
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-28
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-21
pfam01486	100	pfam01486, K-box, K-box region	4e-18
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-12

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  141 bits (359), Expect = 1e-43
 Identities = 51/71 (71%), Positives = 62/71 (87%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GRGKIEIKRIEN+ +RQVTFSKRR GLLKKA EL++LCDAEVA+IIFS++GKL+EFSS  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 MKRTLSRYNKC 72
          M++ + RY K 
Sbjct: 61 MEKIIERYQKT 71

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  116 bits (293), Expect = 7e-34
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
          GR KIEIKRIEN  +RQVTFSKRR GL KKA EL++LCDAEVA+I+FS TGKL+EF+S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  113 bits (285), Expect = 1e-32
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
          GRGKIEIKRIEN  SRQVTFSKRR GL KKA EL++LCDAEVAVI+FS +GKL+EF SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  101 bits (254), Expect = 7e-28
 Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF-SSS 60
          GR KI+IKRIEN   R VTFSKRR GL KKA EL+ LC AEVAVI++S +GKL+ F  SS
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 61 GMKRTLSRYNK 71
           ++  +SR+  
Sbjct: 61 EVEGVISRFEV 71

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 83.6 bits (207), Expect = 3e-21
 Identities = 39/51 (76%), Positives = 47/51 (92%)

Query: 9  KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
          KRIEN ++RQVTFSKRR G+ KKA EL++LCDAEVAVIIFS+TGKL+E+SS
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 76.4 bits (189), Expect = 4e-18
 Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 76  SEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLL 135
           +++  ++Y+  +Q   E   LK +   LQ +Q  LLG+DL  LSLKELQ LEQ L  GL 
Sbjct: 7   NDLWESKYENLQQ---EAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLK 63

Query: 136 LVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172
            ++ +K +LL+ Q+E+ + +E+    EN  LR+++EE
Sbjct: 64  HIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           +   KI I  I N   R VTFSKR+ G+ KKA EL++L   EV +++ S  G +  F++ 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  GMKRTLS 67
            ++  + 
Sbjct: 141 KLESVVK 147

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.83
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.47
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.62
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.75
PRK13169	110	DNA replication intiation control protein YabA; Re	88.46
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	84.75
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.66
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	83.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.17
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.91
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.13
COG4467	114	Regulator of replication initiation timing [Replic	80.8

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=8.4e-39  Score=272.28  Aligned_cols=160  Identities=44%  Similarity=0.593  Sum_probs=128.5

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccc--ccccccccccccccchh
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG--MKRTLSRYNKCLDFSEV   78 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~s--m~~ileRY~~~~~~~~~   78 (255)
                      |||+||+|+||+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++  |..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999876  99999999876522110


Q ss_pred             hH---Hhhh--------------hh----hhhHHHHHhhHHHHHHHH---HHHhhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 025240           79 AV---AEYK--------------TE----KQDSKEVDGLKDEIAKLQ---MKQLRLLGKDLNGLSL-KELQLLEQDLNEG  133 (255)
Q Consensus        79 ~~---~~~~--------------~e----~~~~~e~~kLk~ei~~Lq---~~~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~  133 (255)
                      ..   ....              .+    .........++...+.++   ...+++.|++|.+++. .+|..++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            00   0000              00    012334555666666665   4488999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 025240          134 LLLVKEKKEKLLMEQLE-QSRVQEQRAM  160 (255)
Q Consensus       134 L~~VR~RK~qll~~qi~-~l~~ke~~l~  160 (255)
                      +..+|..+...+.+++. .++.++..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE  188 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence            99999999999988876 4454444443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=3.2e-33  Score=204.73  Aligned_cols=73  Identities=70%  Similarity=1.087  Sum_probs=71.1

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLD   74 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~~   74 (255)
                      ||+||+|++|||..+|++||+||+.||||||+||||||||+||||||||+|++|+|+++++++||+||...++
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998763

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=3.1e-30  Score=191.63  Aligned_cols=72  Identities=57%  Similarity=0.860  Sum_probs=69.3

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccc-cccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG-MKRTLSRYNKCL   73 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~s-m~~ileRY~~~~   73 (255)
                      ||+||+|++|+|..+|+|||+||+.||||||+||||||||+||+|||||+|+.|+|++++ +..+|+||...+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~   73 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS   73 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence            899999999999999999999999999999999999999999999999999999988766 999999998876

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.3e-29  Score=175.75  Aligned_cols=59  Identities=75%  Similarity=1.126  Sum_probs=57.7

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS   60 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~   60 (255)
                      ||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=6.1e-29  Score=172.55  Aligned_cols=59  Identities=80%  Similarity=1.159  Sum_probs=57.5

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS   60 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~   60 (255)
                      ||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|+++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999864

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1.7e-27  Score=160.20  Aligned_cols=51  Identities=61%  Similarity=0.983  Sum_probs=47.1

Q ss_pred             EEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccc
Q 025240            9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS   59 (255)
Q Consensus         9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s   59 (255)
                      |+|+|.+.|++||+||+.||||||+|||+||||+||||||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.83  E-value=6.3e-20  Score=140.95  Aligned_cols=86  Identities=42%  Similarity=0.597  Sum_probs=83.5

Q ss_pred             hhhHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240           87 KQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETL  166 (255)
Q Consensus        87 ~~~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~L  166 (255)
                      +.+..++.+|+.+++.|+..+|+++|++|++|+++||++||.+|+.+|.+||+||+++|+++|+.|++|+..+.++|..|
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L   94 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQL   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 025240          167 RRQVEE  172 (255)
Q Consensus       167 r~~~~~  172 (255)
                      +.+++|
T Consensus        95 ~~~~~e  100 (100)
T PF01486_consen   95 RQKIEE  100 (100)
T ss_pred             HHHhcC
Confidence            999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=7.1e-20  Score=161.33  Aligned_cols=67  Identities=39%  Similarity=0.654  Sum_probs=64.0

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSR   68 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileR   68 (255)
                      ||.||+|.+|||+..|.||||||+.|+||||+|||||.+.+|-|+|.|.+|-+|.|+.+-++.||..
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s  129 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITS  129 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccc
Confidence            7999999999999999999999999999999999999999999999999999999999888777754

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.47  E-value=2.5e-14  Score=131.62  Aligned_cols=67  Identities=36%  Similarity=0.561  Sum_probs=63.0

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccc
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLS   67 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ile   67 (255)
                      |||+||.|..|+|+.+|.|||+||+.|++|||+||+||.+.+|.|+|.|.+|+++.|+.+..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            7899999999999999999999999999999999999999999999999999999999876665553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.62  E-value=0.39  Score=34.59  Aligned_cols=51  Identities=27%  Similarity=0.393  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL  173 (255)
Q Consensus       118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~  173 (255)
                      ++++.|.+||..+..++..|.     +|..+++.|+.+-..|.++|..|+...+.+
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            578899999999999999884     455666777777555555555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.75  E-value=3.6  Score=31.90  Aligned_cols=51  Identities=35%  Similarity=0.457  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240          120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG  175 (255)
Q Consensus       120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~  175 (255)
                      ++.|.+||.+|..-+..|.+-|.++     ..|-..-..|.-||..||..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567778888887777776666554     34445556777888889988887654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.46  E-value=3.7  Score=31.99  Aligned_cols=51  Identities=31%  Similarity=0.360  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240          120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG  175 (255)
Q Consensus       120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~  175 (255)
                      ++.+.+||.+|..-+..+.+-|.++     ..|-..-..|.-||..||..+.+...
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567888888888888877766555     34545566788899999999988643

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=84.75  E-value=2.4  Score=29.15  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          143 KLLMEQLEQSRVQEQRAMLENETLRRQV  170 (255)
Q Consensus       143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~  170 (255)
                      +.+.++|..|..+...|+.||..||..+
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567788888888888888888888764

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.66  E-value=2.3  Score=29.44  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=25.4

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025240          109 RLLGKDLNGLSLKELQLLEQDLNEGLLLVKEK  140 (255)
Q Consensus       109 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~R  140 (255)
                      +..|+||+.||++||..--..|+.-+.++++-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999988777777666666543

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=83.17  E-value=2.3  Score=33.02  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240          150 EQSRVQEQRAMLENETLRRQVEELR  174 (255)
Q Consensus       150 ~~l~~ke~~l~~eN~~Lr~~~~~~~  174 (255)
                      ..++++.+.|+|||..|+-|++-+-
T Consensus        75 ~rlkkk~~~LeEENNlLklKievLL   99 (108)
T cd07429          75 LRLKKKNQQLEEENNLLKLKIEVLL   99 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888899999999999987654

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.17  E-value=16  Score=26.70  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENE  164 (255)
Q Consensus       118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~  164 (255)
                      ||++=|.+||..+..++..|     .+|.=+|+.|+.|-..|.+++.
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~   42 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999998887     4555667777776555555433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.91  E-value=15  Score=26.31  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE  172 (255)
Q Consensus       118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~  172 (255)
                      ||++=|.+||..+..++..|     .|+.=+|+.|+.|...|..|-..++...++
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea   50 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA   50 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence            56777888888888887776     455556677766655554444444443333

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.13  E-value=0.17  Score=28.35  Aligned_cols=13  Identities=38%  Similarity=0.853  Sum_probs=10.5

Q ss_pred             EEEEecCCCCccc
Q 025240           44 AVIIFSNTGKLFE   56 (255)
Q Consensus        44 alIvfS~~gkl~e   56 (255)
                      .+.+|||.|+||.
T Consensus         4 ~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    4 SITTFSPDGRLFQ   16 (23)
T ss_dssp             STTSBBTTSSBHH
T ss_pred             CceeECCCCeEEe
Confidence            3457999999986

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=80.80  E-value=8.2  Score=29.89  Aligned_cols=48  Identities=27%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE  172 (255)
Q Consensus       120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~  172 (255)
                      ++.+.+||.+|-.-+..|-+-|.++     ..|-..-..|+-||..||+.+.+
T Consensus         7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence            4677888888888887777766554     33434445677788888888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-17
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		5e-17
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		5e-17
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		7e-17
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-16
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-16
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		6e-10
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-07
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		2e-07

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 55/70 (78%)
Query: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
          MGR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF++  +LF+++S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 GMKRTLSRYN 70
           M R L +Y 
Sbjct: 61 DMDRVLLKYT 70

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 55/68 (80%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKRTLSRY 69
          M + L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 55/68 (80%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKRTLSRY 69
          M + L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 55/69 (79%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKRTLSRYN 70
          M + L +Y 
Sbjct: 61 MDKVLLKYT 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF++  +LF+++S+ 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 MKRTLSRYN 70
          M R L +Y 
Sbjct: 61 MDRVLLKYT 69

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 55/68 (80%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++L DAE+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 MKRTLSRY 69
          M + L +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 3  RGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
          R KIEIK IEN   R VTFSKR+ G++KKA EL++L   +V +++ S TG ++ FS+
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
          GR KI+++ I+N   R  TFSKR+ G++KKA EL+ L   +V +++ S TG ++ F++
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
          GR KI+++ I+N   R  TFSKR+ G++KKA EL+ L   +V +++ S TG ++ F++
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-40
1egw_A	77	MADS box transcription enhancer factor 2, polypept	6e-40
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-38
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-38
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-37
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  133 bits (337), Expect = 2e-40
 Identities = 39/90 (43%), Positives = 61/90 (67%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MKRTLSRYNKCLDFSEVAVAEYKTEKQDSK 91
          M + L +Y +  +  E        E  + K
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  132 bits (333), Expect = 6e-40
 Identities = 36/71 (50%), Positives = 56/71 (78%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MKRTLSRYNKC 72
          M + L +Y + 
Sbjct: 61 MDKVLLKYTEY 71

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  128 bits (324), Expect = 2e-38
 Identities = 24/72 (33%), Positives = 44/72 (61%)

Query: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA EL+ L   +V +++ S TG ++ F++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 GMKRTLSRYNKC 72
           ++  ++     
Sbjct: 70 KLQPMITSETGK 81

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  128 bits (323), Expect = 3e-38
 Identities = 29/72 (40%), Positives = 45/72 (62%)

Query: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
            R KIEIK IEN   R VTFSKR+ G++KKA EL++L   +V +++ S TG ++ FS+ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 GMKRTLSRYNKC 72
            +  +++    
Sbjct: 76 KFEPIVTQQEGR 87

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  127 bits (320), Expect = 1e-37
 Identities = 24/72 (33%), Positives = 44/72 (61%)

Query: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA EL+ L   +V +++ S TG ++ F++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 GMKRTLSRYNKC 72
           ++  ++     
Sbjct: 69 KLQPMITSETGK 80

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 9    KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKL-FEFSSSGMKRTLS 67
              I     +    +K R  L ++  +L      E          K   E   S ++  L 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 68   RYNKCLDFSEVAVAEYKTEKQD-SKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLL 126
            +  K     E    + + E  D  +++  L+ +IA+L+  QL    ++L     +    L
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK-AQLAKKEEELQAALAR----L 1104

Query: 127  EQDLNEGLLLVKEKKE-----KLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174
            E + ++    +K+ +E       L E LE  +    +A  +   L  ++E L+
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.69
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	89.43
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	83.16
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	80.27

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.8e-39  Score=234.62  Aligned_cols=72  Identities=50%  Similarity=0.879  Sum_probs=70.1

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL   73 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~   73 (255)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|+.||+||+.++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~   72 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN   72 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.7e-38  Score=236.01  Aligned_cols=74  Identities=49%  Similarity=0.851  Sum_probs=71.9

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDF   75 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~~~   75 (255)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+.++..
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~   74 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988743

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=4.4e-37  Score=232.24  Aligned_cols=71  Identities=41%  Similarity=0.637  Sum_probs=69.4

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccc
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNK   71 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~   71 (255)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999864

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=6.5e-37  Score=228.42  Aligned_cols=70  Identities=34%  Similarity=0.579  Sum_probs=68.5

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccccc
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYN   70 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~   70 (255)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2.5e-36  Score=229.51  Aligned_cols=69  Identities=35%  Similarity=0.585  Sum_probs=67.9

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccc
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRY   69 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY   69 (255)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..+|+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.69  E-value=2.9  Score=29.73  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENET  165 (255)
Q Consensus       118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~  165 (255)
                      +|++=|.+||..+..++..|     .++.-+|+.|+.|-..|..+|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999877     45666777777776665555544

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=89.43  E-value=2.4  Score=28.25  Aligned_cols=53  Identities=23%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          116 NGLSLKELQLLEQDLNEGLLLVKE--KKEKLLMEQLEQSRVQEQRAMLENETLRR  168 (255)
Q Consensus       116 ~~Ls~~EL~~LE~~Le~~L~~VR~--RK~qll~~qi~~l~~ke~~l~~eN~~Lr~  168 (255)
                      +..++.|..++.+.|-.+=.+|..  +-+.-+.+|+..|+++.+.|+.||..||.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            456788887777777666555532  33445678899999999999999999985

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=83.16  E-value=3.7  Score=28.37  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240          133 GLLLVKEKKEKLLME---QLEQSRVQEQRAMLENETLRRQVEELR  174 (255)
Q Consensus       133 ~L~~VR~RK~qll~~---qi~~l~~ke~~l~~eN~~Lr~~~~~~~  174 (255)
                      +-...|.||.+-|.+   ++..|......+..||..|+.++..+.
T Consensus        19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~   63 (70)
T 1gd2_E           19 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE   63 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777766544   455555555566778888888877654

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=80.27  E-value=2.6  Score=29.31  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240          143 KLLMEQLEQSRVQEQRAMLENETLRRQV  170 (255)
Q Consensus       143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~  170 (255)
                      +.|.++|..|..+...|+.||..||.-.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567888888888888999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	7e-36
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-34
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-34

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 7e-36
 Identities = 36/70 (51%), Positives = 56/70 (80%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
          GR KI+I RI +  +RQVTF+KR+ GL+KKA EL++LCD E+A+IIF+++ KLF+++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MKRTLSRYNK 71
          M + L +Y +
Sbjct: 61 MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-34
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 6/83 (7%)

Query: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA EL+ L   +V +++ S TG ++ F++ 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 GMKRTLSRYN------KCLDFSE 77
           ++  ++          CL+  +
Sbjct: 62 KLQPMITSETGKALIQTCLNSPD 84

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (293), Expect = 3e-34
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG 61
           R KIEIK IEN   R VTFSKR+ G++KKA EL++L   +V +++ S TG ++ FS+  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 MKRTLSRY------NKCLDFSE 77
           +  +++         CL+  +
Sbjct: 63 FEPIVTQQEGRNLIQACLNAPD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=223.20  Aligned_cols=71  Identities=51%  Similarity=0.906  Sum_probs=69.4

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKC   72 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~   72 (255)
                      ||+||+|++|||+..|+|||+|||+||||||+||||||||+||||||||+|++|+|+|+++++||+||..+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999753

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=218.65  Aligned_cols=71  Identities=34%  Similarity=0.566  Sum_probs=69.5

Q ss_pred             CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccc
Q 025240            1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNK   71 (255)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~   71 (255)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.+|++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999964

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=216.93  Aligned_cols=72  Identities=40%  Similarity=0.611  Sum_probs=69.8

Q ss_pred             CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccc
Q 025240            2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL   73 (255)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~   73 (255)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||....
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998543