Citrus Sinensis ID: 025274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
ccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccEEEEEEEEccccEEEEccccccccccccccccccEEccccccccccccccEEEcccEEEEccccccccccccccEEEEEEEcccccccccccccEEEEEEEEEcccccEEEEEEEEcccccEEEEEEcccccccccccccEEEEccccccEEEcccccccEEEEccEEEEcccccEEEEEEEccccccEEEEccccccEEEEEEEEEEEEEcc
cccHHHHHcccccEEEEEccccccEEEEEcccccEEEEEEEccEEEEEcccccccEEEEcccccccccccEcccccccccccccccccccccccccccEEEEccccccccccccccEEEEEEEcccHcHcccccccEEEEEEEEEccccEEEEEEEEEccccccEEEHHHHHHHcEcccccEEEEEcccccHHHHcccccccccccccEEEEcccccEEEEccccEEEEEcccccHHHHHEEEEcEEEEEEEEcc
mkdsgaasdhRAAVEvtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTstkaifkpphavrggipicfpqfgnrgsleqhgfarnrswviddnppplkpsdsqgkVYVDLLlkpseedlkiwphSFEFRLRVSLAADGNLALISRirninckpfsfsIAYHTYFAISDISEVRIEGLETLDYLDNLCqrerfteqgdaltfESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
mkdsgaasdhraavevtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNppplkpsdsqGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
**************************V**********ISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVI**************KVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIR***
***************VTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIR***
*************VEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
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MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAFVSAFLFCRLIGFISVLQIRLQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.835 0.647 0.638 5e-78
Q03161297 Glucose-6-phosphate 1-epi yes no 0.756 0.649 0.293 1e-17
P39173294 Putative glucose-6-phosph N/A no 0.6 0.520 0.333 2e-17
P44160271 Putative glucose-6-phosph yes no 0.411 0.387 0.282 1e-05
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 138/216 (63%), Positives = 168/216 (77%), Gaps = 3/216 (1%)

Query: 15  EVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGG 74
           E+ K  +G+E+VVLR  R   A+I L+GGQ  SW+ + GEELLF S+KAIFKPP A+RGG
Sbjct: 25  ELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGG 84

Query: 75  IPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWP 134
           IPIC PQFG  G+LEQHGFARNR W ID++PPPL P +   K +VDL+L+P+EEDLKIWP
Sbjct: 85  IPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPL-PVNPAIKAFVDLILRPAEEDLKIWP 143

Query: 135 HSFEFRLRVSLAADGNLALISRIRNINC--KPFSFSIAYHTYFAISDISEVRIEGLETLD 192
           HSFEFRLRV+L   G+L+L SRIRN N   +PFS++ AYHTYF +SDISEVR+EGLET+D
Sbjct: 144 HSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMD 203

Query: 193 YLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIA 228
           YLDNL  +ERFTEQGDA+ FESEV    +     IA
Sbjct: 204 YLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIA 239

Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
255537695305 aldose 1-epimerase, putative [Ricinus co 0.847 0.708 0.824 1e-105
255541784317 aldose 1-epimerase, putative [Ricinus co 0.847 0.681 0.805 1e-100
225454434312 PREDICTED: putative glucose-6-phosphate 0.847 0.692 0.800 1e-100
357481487304 Apospory-associated protein C [Medicago 0.843 0.707 0.801 6e-99
388509736304 unknown [Medicago truncatula] 0.843 0.707 0.797 5e-98
449521465304 PREDICTED: putative glucose-6-phosphate 0.847 0.710 0.782 1e-97
224058411306 predicted protein [Populus trichocarpa] 0.843 0.702 0.808 4e-97
449464082304 PREDICTED: putative glucose-6-phosphate 0.847 0.710 0.777 8e-97
224064156317 predicted protein [Populus trichocarpa] 0.847 0.681 0.768 1e-95
356506036317 PREDICTED: putative glucose-6-phosphate 0.847 0.681 0.754 4e-93
>gi|255537695|ref|XP_002509914.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549813|gb|EEF51301.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/217 (82%), Positives = 200/217 (92%), Gaps = 1/217 (0%)

Query: 1   MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTS 60
           M  SGAA D +AAVEV KDRNGI+Q++LRNPRGASA++SLHGGQ LSW+T++GEELLFTS
Sbjct: 1   MNHSGAACDQKAAVEVIKDRNGIDQIILRNPRGASARVSLHGGQVLSWKTDQGEELLFTS 60

Query: 61  TK-AIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYV 119
           +K AIFKPPH VRGGIPICFPQFGNRGSLEQHGFAR + WVIDDNPPPL P++S GK YV
Sbjct: 61  SKQAIFKPPHPVRGGIPICFPQFGNRGSLEQHGFARKKIWVIDDNPPPLHPNESNGKAYV 120

Query: 120 DLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD 179
           DLLLKPS++DLKIWPH FEFRLRVSLAADGNL L+SRIRN+NCKP +FSIAYHTYF+ISD
Sbjct: 121 DLLLKPSDDDLKIWPHCFEFRLRVSLAADGNLTLLSRIRNVNCKPLAFSIAYHTYFSISD 180

Query: 180 ISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEV 216
           ISEVR+EGLETLDYLDNLCQ+ERFTEQGD LTFESEV
Sbjct: 181 ISEVRVEGLETLDYLDNLCQKERFTEQGDTLTFESEV 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541784|ref|XP_002511956.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549136|gb|EEF50625.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454434|ref|XP_002280220.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297745389|emb|CBI40469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481487|ref|XP_003611029.1| Apospory-associated protein C [Medicago truncatula] gi|355512364|gb|AES93987.1| Apospory-associated protein C [Medicago truncatula] Back     alignment and taxonomy information
>gi|388509736|gb|AFK42934.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449521465|ref|XP_004167750.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224058411|ref|XP_002299496.1| predicted protein [Populus trichocarpa] gi|222846754|gb|EEE84301.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449464082|ref|XP_004149758.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224064156|ref|XP_002301394.1| predicted protein [Populus trichocarpa] gi|118487620|gb|ABK95635.1| unknown [Populus trichocarpa] gi|222843120|gb|EEE80667.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506036|ref|XP_003521794.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.835 0.696 0.738 6.9e-86
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.815 0.656 0.754 4.4e-84
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.788 0.644 0.642 2.1e-70
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.764 0.637 0.590 1.4e-62
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.784 0.653 0.576 1.8e-62
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.807 0.647 0.519 4.6e-57
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.674 0.581 0.387 1.1e-25
TIGR_CMR|VC_2001296 VC_2001 "conserved hypothetica 0.674 0.581 0.387 1.1e-25
TAIR|locus:2154870307 AT5G66530 [Arabidopsis thalian 0.780 0.648 0.344 2.2e-25
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.752 0.609 0.330 3.8e-23
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 158/214 (73%), Positives = 184/214 (85%)

Query:     4 SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
             SG   + R  V++ KDRNG +Q++L+NPRGAS KISLHGGQ LSW+T++G+ELLF STKA
Sbjct:     5 SGTGPEKRPTVDLVKDRNGTDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTKA 64

Query:    64 IFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLL 123
               KPPH VRGGIPICFPQFG RGSLEQHGFARN+ W++++NPP L   DS GK YVDL+L
Sbjct:    65 NLKPPHPVRGGIPICFPQFGTRGSLEQHGFARNKMWLVENNPPALPSFDSTGKAYVDLVL 124

Query:   124 KPSEED-LKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182
             K S+ED ++IWP+SFEF LRVSLA DGNL LISR+RNIN KPFSFSIAYHTYF+ISDISE
Sbjct:   125 KSSDEDTMRIWPYSFEFHLRVSLALDGNLTLISRVRNINSKPFSFSIAYHTYFSISDISE 184

Query:   183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEV 216
             VR+EGLETLDYLDN+  RERFTEQGDALTFESE+
Sbjct:   185 VRLEGLETLDYLDNMHDRERFTEQGDALTFESEI 218
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2154870 AT5G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 1e-72
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 5e-42
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 5e-38
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 2e-25
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 1e-13
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 4e-12
COG2017308 COG2017, GalM, Galactose mutarotase and related en 1e-08
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score =  222 bits (569), Expect = 1e-72
 Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 12/194 (6%)

Query: 26  VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNR 85
           +VL +P GASA+I+L G Q LSW+ + G++LL+ S +A F    A+RGGIP+C+P FG  
Sbjct: 2   IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPH 60

Query: 86  G---SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLR 142
           G    L  HGFAR R W + +       S+ +  V V L L  ++E   IWPH+FE RL 
Sbjct: 61  GPNADLPAHGFARTRLWELLEV------SEDEDGVTVSLELDDTDETRAIWPHAFELRLT 114

Query: 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRER 202
           V+L  D  L L   + N   KPFSF+ A HTYF +SDI +VR+EGLE   YLD L  +  
Sbjct: 115 VTLGFDT-LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE 173

Query: 203 FTEQGDALTFESEV 216
              QG A+TF+ EV
Sbjct: 174 -KVQGGAVTFDGEV 186

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 99.97
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 99.96
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 99.94
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 99.94
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.9
PRK15172300 putative aldose-1-epimerase; Provisional 99.9
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.87
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.85
PLN00194337 aldose 1-epimerase; Provisional 99.8
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.77
PRK11055342 galM galactose-1-epimerase; Provisional 99.73
PTZ00485 376 aldolase 1-epimerase; Provisional 99.64
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.39
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 99.2
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 98.47
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 98.15
PF14315274 DUF4380: Domain of unknown function (DUF4380) 97.43
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 92.92
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 92.88
PRK01318 521 membrane protein insertase; Provisional 88.99
PF09095278 DUF1926: Domain of unknown function (DUF1926); Int 82.49
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 80.13
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-56  Score=387.93  Aligned_cols=226  Identities=65%  Similarity=1.066  Sum_probs=210.8

Q ss_pred             CCCCCCCCCCcceEEEEecCCCeeEEEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceecc
Q 025274            1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP   80 (255)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP   80 (255)
                      |+++..-+..+..+++.++.+|++.|.|+++.+.+|+|+++||+|+||+...|+|.||+|..|.+++.||||||||+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP   80 (305)
T KOG1594|consen    1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP   80 (305)
T ss_pred             CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence            66666667777889999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ccCCCCCCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeC
Q 025274           81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI  160 (255)
Q Consensus        81 ~fg~~~~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~  160 (255)
                      +||..+.+++|||||++.|+++....+.|   ..+...|.|.|.+++++++.|||+|++++++.|.+ +.|+++..|+|+
T Consensus        81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt  156 (305)
T KOG1594|consen   81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT  156 (305)
T ss_pred             ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence            99999999999999999999998865443   22468999999999999999999999999999996 789999999999


Q ss_pred             CCCeEEEeeeccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEEEE
Q 025274          161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQK  230 (255)
Q Consensus       161 g~~~~pf~~g~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~~~  230 (255)
                      +++||.|++++||||+|+|+..++|+||+|+.|+|++.++++++++.++|+|.+++||||+++|+++.+-
T Consensus       157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~  226 (305)
T KOG1594|consen  157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIF  226 (305)
T ss_pred             CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEE
Confidence            9999999999999999999999999999999999999888889999999999999999999999887753

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 1e-18
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-18
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-18
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 7e-12
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 5e-11
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 21  NGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP 80
           + ++ +V+ +P+   A  +L G   LSW+    EE+L+ S    FK   A+RGG+PIC+P
Sbjct: 39  DDLDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWP 97
Query: 81  QFG--NRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFE 138
            FG   +  L  HGFARN  W +  +      ++    V +   L+ SE   K WPH F 
Sbjct: 98  WFGPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTFELQSSEATRKYWPHDFT 151
Query: 139 FRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
              R  +     + L +         F+ + A H+YF + DI+ V++ GL
Sbjct: 152 LLARFKVGKTCEIELEAH------GEFATTSALHSYFNVGDIANVKVSGL 195
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 3e-60
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 2e-59
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 3e-58
1jov_A270 HI1317; hypothetical protein, structure 2 function 2e-41
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 2e-33
3q1n_A294 Galactose mutarotase related enzyme; structural ge 1e-31
3os7_A341 Galactose mutarotase-like protein; structural geno 7e-19
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 2e-17
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 1e-13
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 3e-07
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
 Score =  191 bits (486), Expect = 3e-60
 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 22/215 (10%)

Query: 13  AVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVR 72
            +  T DR     +         + +   GG    W   +G+ +L+   +    P  +VR
Sbjct: 3   NISFTPDRPLTYHLEDDQSLARLSLVPGRGGLVTEWTV-QGQPILYFDRERFQDPSLSVR 61

Query: 73  GGIPICFPQFGN-----------RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDL 121
           GGIPI FP  GN              L+QHGFAR+  W +           +Q    +DL
Sbjct: 62  GGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQ-------QTQDNARLDL 114

Query: 122 LLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDIS 181
            L  ++  L+ +P +FE      L     L +  RI N+  +   FS+ +H YF   +  
Sbjct: 115 RLSHNDATLEAFPFAFELVFSYQLQGHS-LRIEQRIANLGDQRMPFSLGFHPYFFCREKL 173

Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEV 216
            + +  +   DYLD     +     G       E+
Sbjct: 174 GITL-AIPANDYLDQK-TGDCHGYDGQLNLTSPEL 206
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 99.97
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 99.97
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 99.96
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 99.96
3os7_A341 Galactose mutarotase-like protein; structural geno 99.96
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 99.95
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 99.92
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.89
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.88
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.87
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.85
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.6
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 94.75
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 93.3
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
Probab=100.00  E-value=2e-39  Score=288.59  Aligned_cols=194  Identities=27%  Similarity=0.422  Sum_probs=160.4

Q ss_pred             cceEEEEecCCCeeEEEEECCCceEEEEecCCcEEEEEEeC-CCeEEEecCCccccCCCCcccCCcceeccccCCCCCCC
Q 025274           11 RAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLE   89 (255)
Q Consensus        11 ~~~~~~~~~~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~-~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~~~~   89 (255)
                      .+.+++.. ++|++.++|+++. .+|+|+++||+|+||++. +|.|+||+++.+.|+.+++||||+|+||||||+.. ++
T Consensus        10 ~~~~~~~~-~~~~~~~~l~~~~-~~a~i~~~Ga~l~s~~~~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~~-~~   86 (270)
T 1jov_A           10 TPELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK-QP   86 (270)
T ss_dssp             ETTEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS-SS
T ss_pred             CCceEEee-eCCceEEEEeCCC-cEEEEECCCCEEEEEEECCCCceEEEECcHHhcCCCCCccCccEEEEeccCCCC-CC
Confidence            45566654 8999999999986 799999999999999985 57899999999999999999999999999999854 69


Q ss_pred             CceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEee
Q 025274           90 QHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSI  169 (255)
Q Consensus        90 ~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~  169 (255)
                      +|||||+++|+|++.+      ++++...++|.|.+++       +.|+++++|+|.    |+++++|+|+|++  ||++
T Consensus        87 ~HGfaR~~~W~v~~~~------~~~~~v~l~~~l~~~~-------~~f~l~~~~~L~----l~~~~~v~N~g~~--p~~~  147 (270)
T 1jov_A           87 AHGTARIRLWQLSHYY------ISVHKVRLEFELFSDL-------NIIEAKVSMVFT----DKCHLTFTHYGEE--SAQA  147 (270)
T ss_dssp             TTBSGGGSBCEEEEEE------EETTEEEEEEEEECTT-------SCEEEEEEEEES----SSEEEEEEECCSS--CEEE
T ss_pred             CCceecCCCcEEeeec------cCCCcEEEEEEECCCc-------cccEEEEEEEEC----CeEEEEEEeCCch--hHhh
Confidence            9999999999999874      1123567788887653       348888999994    6777888999986  6899


Q ss_pred             eccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEEE
Q 025274          170 AYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQ  229 (255)
Q Consensus       170 g~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~~  229 (255)
                      |+||||+++|+.+++|+|+++ .|+|++.+....  +.+.+.|.+++||||...+..+.+
T Consensus       148 g~HpyF~v~d~~~~~v~g~~~-~~~d~l~~~~~~--~~~~~~~~~~~D~vy~~~~~~~~i  204 (270)
T 1jov_A          148 ALHTYFNIGDINQVEVQGLPE-TCFNSLNQQQEN--VPSPRHISENVDCIYSAENMQNQI  204 (270)
T ss_dssp             EECCEEECSCGGGEEEESCCS-EEEETTTTEEEE--CCSSBCCSSCEEEEEECSSSEEEE
T ss_pred             hcccceecCCcceEEEECCCC-cceeccCCcccc--cCCcccCCCCccceeCCCCCCEEE
Confidence            999999999999999999955 899987654322  346788999999999876544443
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 3e-48
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  158 bits (400), Expect = 3e-48
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 25/199 (12%)

Query: 19  DRNGIEQVVLRNPRGASAKISLHGGQALSWRTERG-EELLFTSTKAIFKPPHAVRGGIPI 77
             N I  + L++  G +AKISL G Q +SW+ +   +++L+ S    FK  +A+RGG+PI
Sbjct: 17  QHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPI 75

Query: 78  CFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSF 137
           C+P FG       HG AR R W +           S  KV ++        +L    +  
Sbjct: 76  CYPWFGGVK-QPAHGTARIRLWQLSHY------YISVHKVRLEF-------ELFSDLNII 121

Query: 138 EFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNL 197
           E ++ +             +   +    S   A HTYF I DI++V ++GL    +    
Sbjct: 122 EAKVSM------VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLN 175

Query: 198 CQRERFTEQGDALTFESEV 216
            Q+E              V
Sbjct: 176 QQQE---NVPSPRHISENV 191

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.67
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.67
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.63
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.56
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.1e-43  Score=313.45  Aligned_cols=197  Identities=26%  Similarity=0.380  Sum_probs=159.3

Q ss_pred             CCcceEEEEecCCCeeEEEEECCCceEEEEecCCcEEEEEEeC-CCeEEEecCCccccCCCCcccCCcceeccccCCCCC
Q 025274            9 DHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGS   87 (255)
Q Consensus         9 ~~~~~~~~~~~~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~-~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~~   87 (255)
                      ...+.+++.+ .++++.++|+|+. .+|+|+++||+|+||+++ ++.|+||+++.+.|+.+++|||||||||||||+. .
T Consensus         8 ~~~~~~~~~~-~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~-~   84 (269)
T d1jova_           8 TLTPELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-K   84 (269)
T ss_dssp             EEETTEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-S
T ss_pred             ccCCeEEeec-cCCccEEEEeCCC-EEEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCCC-C
Confidence            3457888888 7999999999996 899999999999999985 4579999999999999999999999999999984 5


Q ss_pred             CCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEE
Q 025274           88 LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSF  167 (255)
Q Consensus        88 ~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf  167 (255)
                      +|+|||||+++|+|++.+      ++.....+++++       ..|||.|+++++|+|+-    +  ++++|+++++|||
T Consensus        85 ~p~HGFAR~~~w~l~~~~------~~~~~~~l~~~l-------~~~~~~f~~~~~~~ltl----~--~~l~n~~~~~~pf  145 (269)
T d1jova_          85 QPAHGTARIRLWQLSHYY------ISVHKVRLEFEL-------FSDLNIIEAKVSMVFTD----K--CHLTFTHYGEESA  145 (269)
T ss_dssp             SSTTBSGGGSBCEEEEEE------EETTEEEEEEEE-------ECTTSCEEEEEEEEESS----S--EEEEEEECCSSCE
T ss_pred             CCCCccccccceEEEEEe------cCCceEEEEEEe-------ccCCCcceEEEEEEecc----E--EEEEEccCCCccc
Confidence            699999999999999875      222233333333       34788888888888742    2  3456777889999


Q ss_pred             eeeccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEEEE
Q 025274          168 SIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQK  230 (255)
Q Consensus       168 ~~g~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~~~  230 (255)
                      ++|+||||+++|++++.++|++++.|.++....   ..+.+.+.|.+++||||...+..+.+.
T Consensus       146 ~~g~HpyF~v~d~~~~~v~gl~~~~~~~~~~~~---~~~~~~~~~~~~~D~i~~~~~~~~~i~  205 (269)
T d1jova_         146 QAALHTYFNIGDINQVEVQGLPETCFNSLNQQQ---ENVPSPRHISENVDCIYSAENMQNQIL  205 (269)
T ss_dssp             EEEECCEEECSCGGGEEEESCCSEEEETTTTEE---EECCSSBCCSSCEEEEEECSSSEEEEE
T ss_pred             eecccceEecCCccceEEecCCccccccccccc---cccCCCcccCcCeeEEecCCCCcEEEE
Confidence            999999999999999999999998876554322   224467889999999999876654443
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure