Citrus Sinensis ID: 025279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Secondary Structure (PSIPRED)
ccccccHHHHHHccccHHHHHHHHHHHHHcEEEccccccccEEEHHHHcHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHEEEEEEEccccccccccccHHHHHHHHHHHEEEEEEEEEEHHHHccccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccHHcccccccccccccccc
Coil and Loop (DISEMBL)
mfganicnyryqiqlsdscfchgqldtGMEKVAIRSRSSQAKILGTVVSIAGAFIVSlykgppllgfsspsnsniqlpvseysnwALGGLLLTVTCFSSATWKIFQAAVLKeypdkinlVFFSCFFGTIQCAVVSIIVernpsawklqpgiQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLgetphlgsliGTVVIAFGFYAVIWAQgkesnmttgnvgsleslnqkipplknt
Flexible Loop (DISEMBL)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNmttgnvgsleslnqkipplknt
Low Complexity Region (SEG)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered region (IsUnstruct)
***ANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS**NSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Disordered Region (DISOPRED)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF*****************WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA***********************P****
Disordered Region (DISEMBL)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered Region (DISPRO)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS**************SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGANICNYRYQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.815	0.565	0.408	6e-42
F4KHA8	370	WAT1-related protein At5g	no	no	0.815	0.562	0.408	2e-40
Q94JU2	367	WAT1-related protein At3g	no	no	0.878	0.610	0.407	4e-39
F4JK59	347	WAT1-related protein At4g	no	no	0.784	0.576	0.432	1e-37
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.839	0.521	0.341	1e-36
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.847	0.555	0.355	2e-36
F4I5D5	375	WAT1-related protein At1g	no	no	0.807	0.549	0.370	1e-34
Q9M0B8	373	WAT1-related protein At4g	no	no	0.811	0.554	0.358	3e-34
Q9LV20	383	WAT1-related protein At3g	no	no	0.807	0.537	0.349	4e-33
F4J9A3	369	WAT1-related protein At3g	no	no	0.796	0.550	0.358	7e-32

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 133/213 (62%), Gaps = 5/213 (2%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYS 83
           ME+V +RS ++QAKI+G ++SI+GA +V LYKGP +L  +S     P+ +  Q   S  S
Sbjct: 133 MEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIES 192

Query: 84  NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 143
           +W +GGLLL    F  + W I Q  V++ YP++I +VFF   F T+    V +  E N +
Sbjct: 193 SWIIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLT 252

Query: 144 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 203
           +W L+P I   A+IY+ +  ++  +    W L  KGPV+++LF+PL  AIAV M  +FLG
Sbjct: 253 SWVLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLG 312

Query: 204 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 236
           +  HLGS+IG++++  GFY VIW + +E  + T
Sbjct: 313 DALHLGSVIGSMILCIGFYTVIWGKAREDTIKT 345

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 136/213 (63%), Gaps = 5/213 (2%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYS 83
           ME++ +RS ++QAKI+GT+VSI+GA +V LYKGP +L  +S     P+ S  Q   S  S
Sbjct: 134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query: 84  NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 143
           +W +GGLLL       + W I Q  V++ YP++I +VF      T+  A V +  E++ +
Sbjct: 194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query: 144 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 203
           ++ L+PG+   +V+Y+  + +   S I  W L  KGPV+++LFKPL   IAV M VMFLG
Sbjct: 254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query: 204 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 236
           +  +LGS+IG+++++ GFY VIW + +E ++ T
Sbjct: 314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKT 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 137/238 (57%), Gaps = 14/238 (5%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           ME V+ +  SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILG 182

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP-SAWKL 147
              L V  F    W I Q  +++EYP +  +V F     +   A+V++  E N   AWK+
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKI 242

Query: 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
           +P I   +++ + + G+ I ++I  W L+ KGP+FVA+FKPL  AIAV M V+FL ++ +
Sbjct: 243 KPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLY 302

Query: 208 LGSLIGTVVIAFGFYAVIWAQGKE---------SNMTTGNVGSLESL--NQKIPPLKN 254
           +GSLIG  VI  GFY V+W + KE         +N    N   L+S   +QK P L++
Sbjct: 303 IGSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLES 360

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 138/208 (66%), Gaps = 8/208 (3%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           ME+V +RS ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +G
Sbjct: 130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIG 181

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
           GLLL +     + W I Q  +++ YP++I +VF      T+    V ++VE++ ++W+L+
Sbjct: 182 GLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLK 241

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
           PG    +VIY+ +  T + S I  W L  KGPV+++LFKPL  AIAV MA +FLG+T HL
Sbjct: 242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query: 209 GSLIGTVVIAFGFYAVIWAQGKESNMTT 236
           GS+IG+V+++FGFY VIW + +E +  T
Sbjct: 302 GSVIGSVILSFGFYTVIWGKAREDSTKT 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 20/234 (8%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY------ 82
           +EKV I  R   AKI+GTV  ++GA I++LYKGPP+     P   N+++  S +      
Sbjct: 132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRP---NLEVTASYFKAFQGN 188

Query: 83  ------SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI 136
                  NW LG + L   C + + W + QA VLK YP ++++  F+CFFG IQ  +++ 
Sbjct: 189 DLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAA 248

Query: 137 IVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVF 196
             E +   WK+  G +   ++YA  V + I  S+  WC+ + GPVFVA+++P+ T     
Sbjct: 249 FFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAI 308

Query: 197 MAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIP 250
           MA + LGE  +LG + G ++I  G Y V+W + +E  +     G L++ +  +P
Sbjct: 309 MASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRL-----GLLQAKSSMVP 357

Pinus taeda (taxid: 3352)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 9/225 (4%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSE 81
           +EKV I  R   +KILGT + +AGA +++LYKGP +   +S        +NS +  P+  
Sbjct: 133 IEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGN 192

Query: 82  YS--NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVE 139
            +  NW LG + L   C S + W +FQA VLK YP ++++  ++CFFG IQ  +++   E
Sbjct: 193 AAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCE 252

Query: 140 RNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV 199
           R+  AW    G +   ++YA IV + I  ++  WC+ + GPVFVA+++P+ T +   MA 
Sbjct: 253 RDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMAS 312

Query: 200 MFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 244
           + LGE  +LG +IG V+I  G Y V++ + +E         +++S
Sbjct: 313 IALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 7/213 (3%)

Query: 28  GMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY----- 82
           G  K+  R+ S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +      
Sbjct: 127 GRSKLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYN 186

Query: 83  --SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVER 140
              NW LG + L V  FS + + + Q   +K+YP  + +  F    GTIQC + S+ +ER
Sbjct: 187 LPDNWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMER 246

Query: 141 NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM 200
           + SAWK+QP      +I     G+VIR+S+   C Q KGP +V LFKP G   A      
Sbjct: 247 DLSAWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTS 306

Query: 201 FLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN 233
           F   + H GS++G  +   G++ V W Q KES 
Sbjct: 307 FFVNSLHYGSVLGAAIAGVGYFTVSWGQLKESE 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 28  GMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQLPVSEYSNW 85
           G EK+ +R     AKI GT++ +AGA  ++L +GP +L   S  P   ++   + + + W
Sbjct: 114 GYEKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTW 173

Query: 86  ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAW 145
            +G L L  +    + W I Q  +   YPD ++L  + C FGTIQCAVV+  +E++P+AW
Sbjct: 174 LIGCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAW 233

Query: 146 KLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGET 205
            L    +    +YA I  + +  ++ AW + K+GPVF ALF PL T I   +A +F  E 
Sbjct: 234 ILHSYSEFATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEE 293

Query: 206 PHLGSLIGTVVIAFGFYAVIWAQGKESNM 234
            + GSLIG + +  G Y V+W + K+  M
Sbjct: 294 IYTGSLIGGLGVILGLYTVLWGKAKDVMM 322

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 115/206 (55%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           +E + +  +   AK+LGT+VSI GA +++LY+G P+            +      +  LG
Sbjct: 148 LEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLG 207

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
            L L   C S A W + QA VLK+YP K+ L  F+CFFG IQ  V+++ VE + + W + 
Sbjct: 208 WLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIV 267

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
              +   ++YA I+ + +   +  WC+ K GPVFVA+F+PL T +   MA + LG+  + 
Sbjct: 268 SWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYS 327

Query: 209 GSLIGTVVIAFGFYAVIWAQGKESNM 234
           G ++G V I  G Y V+W + +E  +
Sbjct: 328 GGIVGAVFIMLGLYLVLWGKNEERKL 353

Arabidopsis thaliana (taxid: 3702)

>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 124/212 (58%), Gaps = 9/212 (4%)

Query: 28  GMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS----NSNIQLPVSEYS 83
           G+EKV  + +   AK++GT+VS+AG+ +++LYKGP +     PS    N  I+   +E  
Sbjct: 122 GIEKVEWKRKDGIAKVVGTIVSVAGSLVITLYKGPTIY---QPSLNIVNQTIKPEEAEEE 178

Query: 84  N--WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN 141
           N  W LG L L   C   ++W + Q+ +LK+YP + + V +SCFF  IQ   +S   ER+
Sbjct: 179 NKNWTLGCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERD 238

Query: 142 PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF 201
              WK+  G +  A++Y  +VG+ +  +I  + +++ GP+FV+ + PL T IA  +A + 
Sbjct: 239 LERWKIISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYLPLQTLIAAVLATLA 298

Query: 202 LGETPHLGSLIGTVVIAFGFYAVIWAQGKESN 233
           LGE  +LG LIG ++I  G Y V+  +  E+ 
Sbjct: 299 LGEHFYLGGLIGAILIMSGLYLVVMGKSWENQ 330

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
147778659	335	hypothetical protein VITISV_034106 [Viti	0.882	0.671	0.506	7e-57
296086518	356	unnamed protein product [Vitis vinifera]	0.878	0.629	0.508	1e-56
224135771	355	predicted protein [Populus trichocarpa]	0.886	0.636	0.478	1e-56
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.878	0.645	0.486	8e-56
118483285	265	unknown [Populus trichocarpa]	0.866	0.833	0.475	4e-55
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.886	0.640	0.497	6e-55
356518605	350	PREDICTED: auxin-induced protein 5NG4-li	0.882	0.642	0.478	9e-54
255552656	358	conserved hypothetical protein [Ricinus	0.815	0.581	0.533	8e-53
224099697	355	predicted protein [Populus trichocarpa]	0.878	0.630	0.460	6e-51
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.874	0.638	0.451	4e-50

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 99  MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 157

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 158 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 217

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +A+ M V+FLG+T ++
Sbjct: 218 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAIAMGVIFLGDTFYM 277

Query: 209 GSLIGTVVIAFGFYAVIWAQGKESNMTTG-NVGSLESLNQKIPPLKN 254
           GSLIG  VI  GFY+V+W + KE  +     V SLES +QK P L+N
Sbjct: 278 GSLIGATVIVIGFYSVMWGKAKEEKIDEDIGVRSLESTSQKAPLLQN 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 156/228 (68%), Gaps = 4/228 (1%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 120 MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 178

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 179 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 238

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++
Sbjct: 239 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYM 298

Query: 209 GSLIGTVVIAFGFYAVIWAQGKESNMTTGNVG--SLESLNQKIPPLKN 254
           GSLIG  VI  GFY+V+W + KE  +   ++G  SLES +QK P L+N
Sbjct: 299 GSLIGATVIVIGFYSVMWGKAKEEKIDE-DIGMRSLESTSQKAPLLQN 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/228 (47%), Positives = 162/228 (71%), Gaps = 2/228 (0%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWAL 87
           MEK+  RS  S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +
Sbjct: 124 MEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWII 183

Query: 88  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 147
           GGL L       + +   QAA+LKEYP ++ +V F C FGTIQ ++VS+I ERNP+AWKL
Sbjct: 184 GGLFLVTADLCVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKL 243

Query: 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
           +P I+  ++IY+A+VG+V+   + AWC++KKGPVFVA+FKP+G A A F+ V+FLG+T H
Sbjct: 244 RPDIELISIIYSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGDTLH 303

Query: 208 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGNV-GSLESLNQKIPPLKN 254
           +GS++G ++I  GFY VIWAQ KE   +  N   +L+SL+QK P L++
Sbjct: 304 VGSIVGAIIIVAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQKTPLLES 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 153/226 (67%), Gaps = 2/226 (0%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 120 MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 178

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 179 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 238

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++
Sbjct: 239 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYM 298

Query: 209 GSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKN 254
           GS+IG  +I  G+Y ++W Q +E +M  G  G ++S  QK+P L+ 
Sbjct: 299 GSVIGAYIIGIGYYTLMWGQIREDDMKAGGEG-IDSSEQKVPLLQE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483285|gb|ABK93545.1| unknown [Populus trichocarpa]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 159/223 (71%), Gaps = 2/223 (0%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWAL 87
           MEK+  RS  S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +
Sbjct: 37  MEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWII 96

Query: 88  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 147
           GGL L       + +   QAA+LKEYP ++ +V F C FGTIQ ++VS+I ERNP+AWKL
Sbjct: 97  GGLFLVTADLCVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKL 156

Query: 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
           +P I+  ++IY+A+VG+V+   + AWC++KKGPVFVA+FKP+G A A F+ V+FLG+T H
Sbjct: 157 RPDIELISIIYSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGDTLH 216

Query: 208 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGNV-GSLESLNQKI 249
           +GS++G ++I  GFY VIWAQ KE   +  N   +L+SL+Q++
Sbjct: 217 VGSIVGAIIIVAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQRL 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 154/229 (67%), Gaps = 3/229 (1%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-PSNSN-IQLPVSEYSNWA 86
           MEK+   S  SQ KI+GTVVSI+GA IV+ YKG P+    + PS S      ++E SNW 
Sbjct: 126 MEKLDAGSSISQIKIVGTVVSISGALIVTFYKGAPISSIQTQPSTSQPFWSLLAETSNWV 185

Query: 87  LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK 146
           +GGL L     S A W I QA +L+ YP ++ +V F C FGTIQCA++S+IV ++P+AW 
Sbjct: 186 IGGLFLATASLSLAIWNIAQAEILRGYPSQLTIVAFYCLFGTIQCALLSLIVVKDPNAWN 245

Query: 147 LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETP 206
           L   I+  A+IY+AI G+ +  S++ WC+ +KGPVFV +FKP+G AIA FM+V FLGET 
Sbjct: 246 LSLDIELIAIIYSAIFGSAVTFSVLTWCIDRKGPVFVTMFKPVGIAIAAFMSVAFLGETL 305

Query: 207 HLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT 255
           H+GS+IG +VIA GFY V+WAQ KE N+    V  L S +   P L++T
Sbjct: 306 HVGSVIGALVIAIGFYTVMWAQSKEKNVKGLEVDRLPS-SSSAPLLEST 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518605|ref|XP_003527969.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/228 (47%), Positives = 156/228 (68%), Gaps = 3/228 (1%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
           MEK+  R  SS AK+LGT+VSIAGAFIV+LYKGP LL   S +N++ Q  +SE SNW L 
Sbjct: 119 MEKLDWRKLSSLAKLLGTIVSIAGAFIVTLYKGPALLMGVSSANTSQQPLLSEDSNWILA 178

Query: 89  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
           GL L   C  ++ + I QA++LK+YP ++ +VFF CFF  IQ AV  ++VER+ SAW L+
Sbjct: 179 GLFLAADCVMASAYIIVQASILKKYPAELIVVFFYCFFVAIQSAVTCLVVERDISAWSLE 238

Query: 149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
           P ++  AV+Y+ + G+  +  II WCL + GPVFV++FKPLG  I+V + V+FLG+  +L
Sbjct: 239 PKLRLLAVLYSGVFGSAFQVGIICWCLHQTGPVFVSMFKPLGILISVVLGVLFLGDAFYL 298

Query: 209 GSLIGTVVIAFGFYAVIWAQ--GKESNMTTGNVGSLESLNQKIPPLKN 254
           GS+IGT  +  G+Y V++ Q  G E   +  +  S +SL++KIP L+ 
Sbjct: 299 GSVIGTTTLGMGYYTVMYGQIKGNEEETSCDDCSS-DSLDKKIPLLQE 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552656|ref|XP_002517371.1| conserved hypothetical protein [Ricinus communis] gi|223543382|gb|EEF44913.1| conserved hypothetical protein [Ricinus communis]

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 112/210 (53%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 27  TGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQLPVSEYSN 84
           T ME + IR  SSQAK LG +VS+AGAF+V+LYKGP +L  +  SN   + QL  S+   
Sbjct: 121 TRMETLDIRRSSSQAKSLGAIVSVAGAFVVTLYKGPAVLMTTQTSNFHHHHQLLFSQKPE 180

Query: 85  WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA 144
           W  GG LL + C  SATW + Q A +KEY + + +VFF  FF TIQ AV S+I+ERNP+A
Sbjct: 181 WIFGGFLLLIVCLLSATWNVAQGATVKEYQEPMTIVFFFTFFITIQSAVFSLILERNPNA 240

Query: 145 WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGE 204
           W L+  I+  A+++ A+ G++ R +I  WCL+KKGPV+VA+FKPLG AIAVFM V+FLG+
Sbjct: 241 WILKSSIEIIAIVFTAVFGSIFRIAIHTWCLRKKGPVYVAMFKPLGIAIAVFMTVVFLGD 300

Query: 205 TPHLGSLIGTVVIAFGFYAVIWAQGKESNM 234
           T +LGS+IG+++IA GFY+V+W Q KE  M
Sbjct: 301 TLYLGSVIGSIIIALGFYSVMWGQMKEKKM 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/228 (46%), Positives = 152/228 (66%), Gaps = 4/228 (1%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLPVSEYSNWAL 87
           MEK+  +S S+  K  GT+VS+AGAFIV  YKGPPLL   +PS SN+    +S+  NW +
Sbjct: 125 MEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLL--MAPSTSNLPHELLSQQQNWII 182

Query: 88  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 147
           GGLLL V C  ++ W I QA +LK+YP ++ +VFF CF  TI   +V + +ER+P AW L
Sbjct: 183 GGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWSL 242

Query: 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
           +P ++  AV+Y+ + G+  +  +  WCL K GPVFVA+FKPLG  IA  ++++ L +T +
Sbjct: 243 KPTVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTLY 302

Query: 208 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGN-VGSLESLNQKIPPLKN 254
           LGSL+G  VI  GFY+V+W + KE  +   + V S ES +QK+P L++
Sbjct: 303 LGSLVGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSSQKVPLLQS 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 157/228 (68%), Gaps = 5/228 (2%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNIQLPVSEYSNWAL 87
           MEK+  R+ SS AK +GT++S+ GAFI++ YKGP +L   +PS NS+ QL +++ SNW +
Sbjct: 120 MEKLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQL-LTQPSNWII 176

Query: 88  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 147
           GGLLL   C  ++ W I QA +LK YP ++ +VFF CFF TI  A+V ++VER+PSAW L
Sbjct: 177 GGLLLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSL 236

Query: 148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
            P I+  +V+Y+ + G+ ++  I  WCL++ GPVFV++FKPLG  IA  + V+ LG+T +
Sbjct: 237 IPNIRLVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLY 296

Query: 208 LGSLIGTVVIAFGFYAVIWAQGKES-NMTTGNVGSLESLNQKIPPLKN 254
           LGS+IGTV+   G+Y V+W Q +E       +V   ++ ++K+P L++
Sbjct: 297 LGSIIGTVICGMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQD 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.784	0.576	0.432	1.9e-42
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.815	0.562	0.403	2.3e-39
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.850	0.591	0.416	2.9e-39
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.847	0.555	0.355	8e-37
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.839	0.521	0.341	2.1e-36
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.803	0.546	0.377	6.5e-35
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.811	0.554	0.358	2.2e-34
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.8	0.532	0.370	5.8e-34
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.788	0.569	0.392	7.4e-34
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.780	0.555	0.369	6.7e-33

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 90/208 (43%), Positives = 138/208 (66%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
             ME+V +RS ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +G
Sbjct:   130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIG 181

Query:    89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 148
             GLLL +     + W I Q  +++ YP++I +VF      T+    V ++VE++ ++W+L+
Sbjct:   182 GLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLK 241

Query:   149 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 208
             PG    +VIY+ +  T + S I  W L  KGPV+++LFKPL  AIAV MA +FLG+T HL
Sbjct:   242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query:   209 GSLIGTVVIAFGFYAVIWAQGKESNMTT 236
             GS+IG+V+++FGFY VIW + +E +  T
Sbjct:   302 GSVIGSVILSFGFYTVIWGKAREDSTKT 329

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 86/213 (40%), Positives = 138/213 (64%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQL--PVSEY-S 83
             ME++ +RS ++QAKI+GT+VSI+GA +V LYKGP +L  +S  P +  I L   ++ + S
Sbjct:   134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query:    84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 143
             +W +GGLLL       + W I Q  V++ YP++I +VF      T+  A V +  E++ +
Sbjct:   194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query:   144 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 203
             ++ L+PG+   +V+Y+  + +   S I  W L  KGPV+++LFKPL   IAV M VMFLG
Sbjct:   254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query:   204 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 236
             +  +LGS+IG+++++ GFY VIW + +E ++ T
Sbjct:   314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKT 346

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 92/221 (41%), Positives = 130/221 (58%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 88
             ME V+ +  SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG
Sbjct:   125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILG 182

Query:    89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP-SAWKL 147
                L V  F    W I Q  +++EYP +  +V F     +   A+V++  E N   AWK+
Sbjct:   183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKI 242

Query:   148 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 207
             +P I   +++ + + G+ I ++I  W L+ KGP+FVA+FKPL  AIAV M V+FL ++ +
Sbjct:   243 KPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLY 302

Query:   208 LGSLIGTVVIAFGFYAVIWAQGKESNMTTG-NVGSLESLNQ 247
             +GSLIG  VI  GFY V+W + KE  +    N  + E  N+
Sbjct:   303 IGSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANE 343

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 80/225 (35%), Positives = 130/225 (57%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSE 81
             +EKV I  R   +KILGT + +AGA +++LYKGP +   +S        +NS +  P+  
Sbjct:   133 IEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGN 192

Query:    82 YS--NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVE 139
              +  NW LG + L   C S + W +FQA VLK YP ++++  ++CFFG IQ  +++   E
Sbjct:   193 AAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCE 252

Query:   140 RNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV 199
             R+  AW    G +   ++YA IV + I  ++  WC+ + GPVFVA+++P+ T +   MA 
Sbjct:   253 RDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMAS 312

Query:   200 MFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 244
             + LGE  +LG +IG V+I  G Y V++ + +E         +++S
Sbjct:   313 IALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 80/234 (34%), Positives = 129/234 (55%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYS----- 83
             +EKV I  R   AKI+GTV  ++GA I++LYKGPP+     P   N+++  S +      
Sbjct:   132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRP---NLEVTASYFKAFQGN 188

Query:    84 -------NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI 136
                    NW LG + L   C + + W + QA VLK YP ++++  F+CFFG IQ  +++ 
Sbjct:   189 DLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAA 248

Query:   137 IVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVF 196
               E +   WK+  G +   ++YA  V + I  S+  WC+ + GPVFVA+++P+ T     
Sbjct:   249 FFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAI 308

Query:   197 MAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIP 250
             MA + LGE  +LG + G ++I  G Y V+W + +E  +     G L++ +  +P
Sbjct:   309 MASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRL-----GLLQAKSSMVP 357

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 80/212 (37%), Positives = 118/212 (55%)

Query:    28 GMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE----YS 83
             G  K+  R+ S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +    Y+
Sbjct:   127 GRSKLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYN 186

Query:    84 ---NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVER 140
                NW LG + L V  FS + + + Q   +K+YP  + +  F    GTIQC + S+ +ER
Sbjct:   187 LPDNWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMER 246

Query:   141 NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM 200
             + SAWK+QP      +I     G+VIR+S+   C Q KGP +V LFKP G   A      
Sbjct:   247 DLSAWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTS 306

Query:   201 FLGETPHLGSLIGTVVIAFGFYAVIWAQGKES 232
             F   + H GS++G  +   G++ V W Q KES
Sbjct:   307 FFVNSLHYGSVLGAAIAGVGYFTVSWGQLKES 338

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/209 (35%), Positives = 117/209 (55%)

Query:    28 GMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQLPVSEYSNW 85
             G EK+ +R     AKI GT++ +AGA  ++L +GP +L   S  P   ++   + + + W
Sbjct:   114 GYEKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTW 173

Query:    86 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAW 145
              +G L L  +    + W I Q  +   YPD ++L  + C FGTIQCAVV+  +E++P+AW
Sbjct:   174 LIGCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAW 233

Query:   146 KLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGET 205
              L    +    +YA I  + +  ++ AW + K+GPVF ALF PL T I   +A +F  E 
Sbjct:   234 ILHSYSEFATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEE 293

Query:   206 PHLGSLIGTVVIAFGFYAVIWAQGKESNM 234
              + GSLIG + +  G Y V+W + K+  M
Sbjct:   294 IYTGSLIGGLGVILGLYTVLWGKAKDVMM 322

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 77/208 (37%), Positives = 121/208 (58%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPV-SEYSN-WA 86
             +E + +  +   AK+LGT+VSI GA +++LY+G P+  F    N   +  V S+ S+   
Sbjct:   148 LEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPI--FDQGLNMQKEEVVGSDNSHSLT 205

Query:    87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK 146
             LG L L   C S A W + QA VLK+YP K+ L  F+CFFG IQ  V+++ VE + + W 
Sbjct:   206 LGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWI 265

Query:   147 LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETP 206
             +    +   ++YA I+ + +   +  WC+ K GPVFVA+F+PL T +   MA + LG+  
Sbjct:   266 IVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQL 325

Query:   207 HLGSLIGTVVIAFGFYAVIWAQGKESNM 234
             + G ++G V I  G Y V+W + +E  +
Sbjct:   326 YSGGIVGAVFIMLGLYLVLWGKNEERKL 353

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 82/209 (39%), Positives = 129/209 (61%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SN 84
             MEKV+ + RSS AK++GT++S+ GA +V LY GP +   SSP   N  QL  P+S   S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSD 186

Query:    85 WALGGLLLTVT-CFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-P 142
             W +GG LLT+   F S ++ I QA ++  YP    + F      +I  +++ ++VE+N P
Sbjct:   187 WLIGGALLTIRDIFVSVSF-ILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNP 245

Query:   143 SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFL 202
             S W ++  I    ++  AI+ T +   I +W ++ KGP+++A+FKPL   IAV M+ +FL
Sbjct:   246 SVWIIRFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFL 304

Query:   203 GETPHLGSLIGTVVIAFGFYAVIWAQGKE 231
              ++ +LG LIG ++I  GFYAV+W +  E
Sbjct:   305 NDSLYLGCLIGGLLITLGFYAVMWGKANE 333

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 78/211 (36%), Positives = 130/211 (61%)

Query:    29 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SN 84
             MEKV+ + RSS AK++GT++S+ GAF+V  Y GP +   SSP   N  QL  P+S   S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSD 186

Query:    85 WALGGLLLTVT-CFSSATWKIFQAAVLKEYPDK--INLVFFSCFFGTIQCAVVSIIVERN 141
             W +GG +LT+   F S ++ I Q  +++EYP+   +++++  C   +I  +++ ++VE+N
Sbjct:   187 WLIGGAILTIQGIFVSVSF-ILQTHIMREYPEAFTVSILYILCI--SIVTSMIGLVVEKN 243

Query:   142 -PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM 200
              PS W +   I    ++   I+ T +   I +W ++ K P+++A+FKPL   IAV M  +
Sbjct:   244 NPSIWIIHFDITLFTIVTTGII-TSVYYVIHSWAIRHKRPLYLAIFKPLSILIAVVMGTI 302

Query:   201 FLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231
             FL ++ +LG LIG ++I  GFY V+W +  E
Sbjct:   303 FLNDSLYLGCLIGGILITLGFYVVMWGKANE 333

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	4e-39
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-05
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.004

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  138 bits (350), Expect = 4e-39
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 29  MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLP---VSEYSN 84
           MEKV+ + RSS AK++GT++S+ GA +V  Y GP +   SSP   N  QL     S  S+
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSD 186

Query: 85  WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PS 143
           W +GG LLT+     +   I QA ++ EYP    + F      +I  +++ ++VE+N PS
Sbjct: 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246

Query: 144 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 203
            W +   I    ++  AI+ T +   I +W ++ KGP+++A+FKPL   IAV M  +FL 
Sbjct: 247 VWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 305

Query: 204 ETPHLGSLIGTVVIAFGFYAVIWAQGKE 231
           ++ +LG LIG ++I  GFYAV+W +  E
Sbjct: 306 DSLYLGCLIGGILITLGFYAVMWGKANE 333

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 97  FSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAV 156
            S A + +F   +L+     +    +      I   ++  ++ +  +   L+      A+
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGILLILLLFLLRKPFALLSLK---AILAL 56

Query: 157 IYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVV 216
           +Y  + GT +   +  + L+       ++   L     + ++V+ LGE   L  L+G V+
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 217 IAFGFYAVIW 226
           I  G   ++ 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 75  IQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVV 134
           I L        +L GLLL +   ++  W ++ A V +        +            ++
Sbjct: 141 ILLGGGGGGILSLLGLLLAL--AAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLL 198

Query: 135 SIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIA 194
              +    +    +  +    ++Y  +  T +   +  + L+  G   VAL   L    A
Sbjct: 199 LFFLSGFGAPILSRAWL---LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFA 255

Query: 195 VFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 231
             + V+ LGE      L+G  ++  G         + 
Sbjct: 256 ALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.9
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.89
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.88
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.86
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.77
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.76
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.65
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.64
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.63
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.62
COG2510	140	Predicted membrane protein [Function unknown]	99.61
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.58
KOG2765	416	consensus Predicted membrane protein [Function unk	99.57
COG2962	293	RarD Predicted permeases [General function predict	99.51
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.45
KOG2766	336	consensus Predicted membrane protein [Function unk	99.38
PRK15430	296	putative chloramphenical resistance permease RarD;	99.36
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.31
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.29
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.23
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.08
PLN00411	358	nodulin MtN21 family protein; Provisional	99.06
PRK11272	292	putative DMT superfamily transporter inner membran	99.05
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.04
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.03
KOG1580	337	consensus UDP-galactose transporter related protei	99.02
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.02
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.01
PRK11689	295	aromatic amino acid exporter; Provisional	98.98
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.9
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.87
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.86
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.82
COG2962	293	RarD Predicted permeases [General function predict	98.74
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.66
KOG1581	327	consensus UDP-galactose transporter related protei	98.64
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.58
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.5
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.5
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.5
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.46
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.46
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.37
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.26
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.2
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.18
KOG1582	367	consensus UDP-galactose transporter related protei	98.17
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.15
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.13
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.11
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.06
COG2076	106	EmrE Membrane transporters of cations and cationic	98.05
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.98
PRK11431	105	multidrug efflux system protein; Provisional	97.98
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.98
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.98
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.96
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.95
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.82
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.66
PRK13499	345	rhamnose-proton symporter; Provisional	97.58
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.41
PRK13499	345	rhamnose-proton symporter; Provisional	97.2
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.15
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.02
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.8
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.34
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.27
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.91
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.77
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.51
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.39
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.16
KOG2765	416	consensus Predicted membrane protein [Function unk	95.08
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.04
PRK02237	109	hypothetical protein; Provisional	94.21
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	93.58
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	93.44
COG2510	140	Predicted membrane protein [Function unknown]	93.19
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	93.09
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.91
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	91.23
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	91.02
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.9
KOG1580	337	consensus UDP-galactose transporter related protei	90.46
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.43
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	90.32
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	89.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	86.26
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	86.19
COG2076	106	EmrE Membrane transporters of cations and cationic	85.34
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.78
PRK09541	110	emrE multidrug efflux protein; Reviewed	83.63
PRK11431	105	multidrug efflux system protein; Provisional	82.76
PRK10650	109	multidrug efflux system protein MdtI; Provisional	81.88

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=6.4e-28  Score=216.03  Aligned_cols=214  Identities=36%  Similarity=0.653  Sum_probs=158.4

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCC--CCCCC-CCCCC-cccccchhhHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS--SPSNS-NIQLP-VSEYSNWALGGLLLTVTCFSS   99 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~G~~l~l~aa~~~   99 (255)
                      +++++.|++.+|||+++++++|++++++|+.++..+++......+  +.-|. ..+.+ .....+...|+++++.++++|
T Consensus       122 a~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~w  201 (358)
T PLN00411        122 AIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFV  201 (358)
T ss_pred             HHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence            455556666689999999999999999999988644443211000  00000 00000 011223467999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279          100 ATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       100 a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      |.|++++|+..+++|++...++|++.++.+.+.+.+...+.. ...|..........++|.+++ +.++|.+|++++++.
T Consensus       202 a~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~  280 (358)
T PLN00411        202 SVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHK  280 (358)
T ss_pred             HHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            999999999988987555778888888888877766655432 223322222234567888875 668999999999999


Q ss_pred             CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccccccCCC
Q 025279          179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGN  238 (255)
Q Consensus       179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~~~~~  238 (255)
                      +|++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.|+||.+++++.
T Consensus       281 ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~  340 (358)
T PLN00411        281 GPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLS  340 (358)
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence            999999999999999999999999999999999999999999999988776664444333

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=1.1e-23  Score=185.10  Aligned_cols=188  Identities=19%  Similarity=0.231  Sum_probs=148.1

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+..+.+++.+|||+++++++|++++++|+.++. .++..                 ..+....|+++++.++++|+.|.
T Consensus        98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~-~~~~~-----------------~~~~~~~G~~l~l~aal~~a~~~  159 (299)
T PRK11453         98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI-EDSLN-----------------GQHVAMLGFMLTLAAAFSWACGN  159 (299)
T ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc-cccCC-----------------CcchhHHHHHHHHHHHHHHHHHH
Confidence            5667789999999999999999999999999885 21110                 01123479999999999999999


Q ss_pred             HHHHHHHhhcCCc--chHHHHHHHHHHHHHHHHHHHhccCC---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279          104 IFQAAVLKEYPDK--INLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       104 vl~k~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      ++.||..++.+++  .....+++..+.+.....+...++..   ..+...+...|..++|+|+++++++|.+|++++++.
T Consensus       160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~  239 (299)
T PRK11453        160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRY  239 (299)
T ss_pred             HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999986655422  23445666666555554444333221   111122345689999999999999999999999999


Q ss_pred             CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      ++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus       240 ~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        240 ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999998877554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.90  E-value=1.1e-22  Score=178.50  Aligned_cols=188  Identities=12%  Similarity=0.046  Sum_probs=139.3

Q ss_pred             hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279           23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW  102 (255)
Q Consensus        23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~  102 (255)
                      ..+..+..++.+|||+++++++|++++++|++++. .++.....        .+.. ....+...|+++++.++++||.|
T Consensus       102 Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~-~~~~~~~~--------~~~~-~~~~~~~~G~~~~l~aa~~~A~~  171 (295)
T PRK11689        102 PSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL-GGDNGLSL--------AELI-NNIASNPLSYGLAFIGAFIWAAY  171 (295)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee-cCCccchh--------hhhh-hccccChHHHHHHHHHHHHHHHH
Confidence            45566778888999999999999999999999985 21110000        0000 00012346999999999999999


Q ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCcee
Q 025279          103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVF  182 (255)
Q Consensus       103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~  182 (255)
                      +++.||..++.+ +....   ...+.+.+.+.....+ ... .. .+...|..+++.++ +++++|.+|++++|+.++++
T Consensus       172 ~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~-~~~-~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~  243 (295)
T PRK11689        172 CNVTRKYARGKN-GITLF---FILTALALWIKYFLSP-QPA-MV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTL  243 (295)
T ss_pred             HHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhc-Ccc-cc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHH
Confidence            999999877765 45432   2333344333333222 111 11 22346777888885 89999999999999999999


Q ss_pred             hhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          183 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       183 ~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ++.+.+++|+++++++++++||++++.+++|+++|+.|+++....+
T Consensus       244 ~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        244 LATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            9999999999999999999999999999999999999998876544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=2.6e-22  Score=175.74  Aligned_cols=181  Identities=17%  Similarity=0.205  Sum_probs=148.0

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+..+...+ +|||+++++++|++++++|+.++. .++.                   .+....|+++.++++++||.|+
T Consensus       108 l~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~-~~~~-------------------~~~~~~G~l~~l~a~~~~a~~~  166 (292)
T PRK11272        108 LFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN-SGGN-------------------LSGNPWGAILILIASASWAFGS  166 (292)
T ss_pred             HHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh-cCcc-------------------cccchHHHHHHHHHHHHHHHHH
Confidence            445556665 699999999999999999998874 1110                   0123579999999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceeh
Q 025279          104 IFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFV  183 (255)
Q Consensus       104 vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~  183 (255)
                      +..||..++ + +...+.+++..+.+.+.+.....+.+...  ..+...|..+++++++++.++|.+|++++|+.+++++
T Consensus       167 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~  242 (292)
T PRK11272        167 VWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA  242 (292)
T ss_pred             HHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            999997544 3 36677889889888887776543322211  1234568899999999999999999999999999999


Q ss_pred             hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          184 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       184 s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      +.+.+++|+++++++++++||++++.+++|+.+|+.|+++..++++
T Consensus       243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999877554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.89  E-value=2e-22  Score=172.93  Aligned_cols=192  Identities=19%  Similarity=0.209  Sum_probs=154.1

Q ss_pred             ecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcc
Q 025279            7 CNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVS   80 (255)
Q Consensus         7 ~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~   80 (255)
                      .+|.++++++++..+.      ..+....+.+.+|||+++++++|++++++|++++. .+++                  
T Consensus        62 ~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~~------------------  122 (260)
T TIGR00950        62 VLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL-SDGN------------------  122 (260)
T ss_pred             HHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc-cCCc------------------
Confidence            4445566665554332      35666788888999999999999999999999984 2211                  


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHH
Q 025279           81 EYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYA  159 (255)
Q Consensus        81 ~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l  159 (255)
                       .+....|++++++++++|+.+.++.|+..++.+. +.....+++..+.+++.+.....++.. ..   +...|..++++
T Consensus       123 -~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~  197 (260)
T TIGR00950       123 -LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYL  197 (260)
T ss_pred             -ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHH
Confidence             1234689999999999999999999998877652 234455778888888888776543222 11   33467789999


Q ss_pred             HHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhh
Q 025279          160 AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFY  222 (255)
Q Consensus       160 gi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~  222 (255)
                      +++++.++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+.
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999863

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.88  E-value=1e-21  Score=172.05  Aligned_cols=169  Identities=13%  Similarity=0.059  Sum_probs=132.6

Q ss_pred             cccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025279           36 SRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPD  115 (255)
Q Consensus        36 e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~  115 (255)
                      ||++  +..++.++++|+.++. ..+...                 +.....|+++.++++++||.|++..||..++++ 
T Consensus       117 ~~~~--~~~~~~i~~~Gv~li~-~~~~~~-----------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-  175 (293)
T PRK10532        117 RRPV--DFVWVVLAVLGLWFLL-PLGQDV-----------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-  175 (293)
T ss_pred             CChH--HHHHHHHHHHHHheee-ecCCCc-----------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence            4554  4556788899998874 211110                 112357999999999999999999999877776 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHH
Q 025279          116 KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAV  195 (255)
Q Consensus       116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~  195 (255)
                      +... .+..+++++++.++....+..   .. .+...|..++++|++++.++|.+|++++|+.++++++.+.++||++++
T Consensus       176 ~~~~-~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~  250 (293)
T PRK10532        176 PATV-AIGSLIAALIFVPIGALQAGE---AL-WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA  250 (293)
T ss_pred             chHH-HHHHHHHHHHHHHHHHHccCc---cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence            4665 466677777777766543211   11 122346667899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          196 FMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       196 l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      +++++++||++++.+++|+++|+.|++...++++|
T Consensus       251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998766544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.87  E-value=7.8e-22  Score=173.44  Aligned_cols=198  Identities=13%  Similarity=0.135  Sum_probs=147.6

Q ss_pred             eeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccc
Q 025279           11 YQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSN   84 (255)
Q Consensus        11 ~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (255)
                      ++.+++++-+..      ..+..+.+++.+|||++++++.|++++++|+++.. . ++                   .+.
T Consensus        84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-~~-------------------~~~  142 (302)
T TIGR00817        84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS-D-TE-------------------LSF  142 (302)
T ss_pred             HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc-C-Cc-------------------ccc
Confidence            355554444332      36667789999999999999999999999998753 1 10                   122


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCC-C--cccc-----cchhHHH
Q 025279           85 WALGGLLLTVTCFSSATWKIFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNP-S--AWKL-----QPGIQRT  154 (255)
Q Consensus        85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~-----~~~~~~~  154 (255)
                      ...|++++++++++|++|+++.||..+  +.+ +...+.|++..+.+.++|+....++.. .  .+..     .....+.
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            457999999999999999999999877  677 699999999999999999887654311 0  0000     0000111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          155 AVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       155 ~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      ..++.+..+....+.++++++++.+|++++.+.+++|++++++|++++||++++.+++|+++++.|+++.++.|++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            1222222222233346668999999999999999999999999999999999999999999999999998876543

specificities overlap.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=5.9e-21  Score=167.52  Aligned_cols=194  Identities=13%  Similarity=0.164  Sum_probs=136.7

Q ss_pred             cceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 025279            4 ANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL   77 (255)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~   77 (255)
                      .++.+|.+++++++...+.      ..+..+.+++.+|||+++++++|++++++|++++. ..++               
T Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~-~~~~---------------  148 (296)
T PRK15430         85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL-WTFG---------------  148 (296)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHcC---------------
Confidence            3455666677765555443      36677789999999999999999999999999985 2100               


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhH-HHH
Q 025279           78 PVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQ-RTA  155 (255)
Q Consensus        78 ~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~  155 (255)
                           + .   ..++++++++||.|+++.||..++.. .....+.+...++.+...+..   ......+. ..+.. +..
T Consensus       149 -----~-~---~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~  215 (296)
T PRK15430        149 -----S-L---PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMG-QNPMSLNLL  215 (296)
T ss_pred             -----C-c---cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCccccc-CCcHHHHHH
Confidence                 0 1   14688899999999999988643221 112333444444444322211   11111111 11222 333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          156 VIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       156 ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      +++.|+ .+.++|.+|++++|+.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+...+
T Consensus       216 ~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        216 LIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            444555 68899999999999999999999999999999999999999999999999999998887776543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.86  E-value=1.8e-20  Score=165.30  Aligned_cols=196  Identities=20%  Similarity=0.248  Sum_probs=152.8

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+.+.+.++.+|+|.++.+++|+++++.|++++... + ...+          .+.+..++...|++++++++++||.++
T Consensus       117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s-D-~~~~----------~~~~~~~~~i~GDll~l~~a~lya~~n  184 (334)
T PF06027_consen  117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS-D-VLSG----------SDSSSGSNPILGDLLALLGAILYAVSN  184 (334)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee-c-cccc----------ccCCCCCccchhHHHHHHHHHHHHHHH
Confidence            455566777778888888999999999999988532 1 1110          001223567899999999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCcee
Q 025279          104 IFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVF  182 (255)
Q Consensus       104 vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~  182 (255)
                      ++.++..++.| +..+..+..+++.++..+...+.+.+ .....  ++.....++....++...-|.+....++..+|+.
T Consensus       185 V~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~  261 (334)
T PF06027_consen  185 VLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF  261 (334)
T ss_pred             HHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence            99999999988 68889999999999988887776653 22222  2223333333344466778888999999999999


Q ss_pred             hhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccccc
Q 025279          183 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM  234 (255)
Q Consensus       183 ~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~  234 (255)
                      ..+-..+..+++++++++++|++++|..++|.++|+.|+++.+..+++++++
T Consensus       262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~  313 (334)
T PF06027_consen  262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA  313 (334)
T ss_pred             eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence            9999999999999999999999999999999999999999998766555443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.84  E-value=6.1e-20  Score=159.88  Aligned_cols=177  Identities=12%  Similarity=0.085  Sum_probs=131.4

Q ss_pred             hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279           23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW  102 (255)
Q Consensus        23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~  102 (255)
                      ..+..+.+++.+|||+++++++|+.+++.|++++. .++.                   ...+..|..++++++++|+.|
T Consensus       100 p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~-~~~~-------------------~~~~~~g~~~~l~aal~~a~~  159 (281)
T TIGR03340       100 PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG-LSRF-------------------AQHRRKAYAWALAAALGTAIY  159 (281)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-cccc-------------------cccchhHHHHHHHHHHHHHHh
Confidence            35555678888999999999999999999999885 2111                   012246788999999999999


Q ss_pred             HHHHHHHHhhcCCcch----HHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279          103 KIFQAAVLKEYPDKIN----LVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       103 ~vl~k~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      +++.|+..++.+ +..    .+.+.++.+++.+.......+...  .. ..+..+..+++.+.+++.++|.+|++++++.
T Consensus       160 ~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~  235 (281)
T TIGR03340       160 SLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMTRL  235 (281)
T ss_pred             hhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999988655444 232    222333332222222221111111  11 1223456778889899999999999999999


Q ss_pred             CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279          179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  223 (255)
Q Consensus       179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l  223 (255)
                      ++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++
T Consensus       236 ~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       236 PVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             CceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=143.98  Aligned_cols=178  Identities=17%  Similarity=0.240  Sum_probs=137.1

Q ss_pred             HHHHhhhh-hhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccc-hhhHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEK-VAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSN-WALGGLLLTVTCFSSAT  101 (255)
Q Consensus        24 a~~~~~e~-~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~  101 (255)
                      .+.....+ +.+|||++++++.+++++++|++++. .++..                  ... ...|+++.++++++|+.
T Consensus       108 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~-~~~~~------------------~~~~~~~g~~~~l~a~~~~a~  168 (292)
T COG0697         108 LFTALLAVLLLLGERLSLLQILGILLALAGVLLIL-LGGGG------------------GGILSLLGLLLALAAALLWAL  168 (292)
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhee-cCCCc------------------chhHHHHHHHHHHHHHHHHHH
Confidence            44555665 55599999999999999999999985 21111                  011 46899999999999999


Q ss_pred             HHHHHHHHHhhcCCcchHHH-HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279          102 WKIFQAAVLKEYPDKINLVF-FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP  180 (255)
Q Consensus       102 ~~vl~k~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a  180 (255)
                      +.+..|+.. +.+ +..... +++.  ............ +..  .......+..+.+.|++++++++.+|++++++.++
T Consensus       169 ~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~  241 (292)
T COG0697         169 YTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLS-GFG--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA  241 (292)
T ss_pred             HHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhc-ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999887 554 355555 4444  222222221111 111  11233468889999999999999999999999999


Q ss_pred             eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .+++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+...+
T Consensus       242 ~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         242 SLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998866

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.76  E-value=1.2e-17  Score=149.91  Aligned_cols=182  Identities=13%  Similarity=0.154  Sum_probs=142.7

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+..+.+++.+|||++++++.+++++++|+++.. . ++                   .+.+..|.+++++|+++|+.++
T Consensus       152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~-~-~~-------------------~~~~~~G~~~~l~s~~~~a~~~  210 (350)
T PTZ00343        152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS-V-KE-------------------LHFTWLAFWCAMLSNLGSSLRS  210 (350)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee-c-cc-------------------chhHHHHHHHHHHHHHHHHHHH
Confidence            6667789999999999999999999999999985 1 11                   1224679999999999999999


Q ss_pred             HHHHHHHhhcC------CcchHHHHHHHHHHHHHHHHHHHhccCC--Cccc----ccchhHHHHHHHHHHHHHHHHHHHH
Q 025279          104 IFQAAVLKEYP------DKINLVFFSCFFGTIQCAVVSIIVERNP--SAWK----LQPGIQRTAVIYAAIVGTVIRSSII  171 (255)
Q Consensus       104 vl~k~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~~ll~lgi~~s~~~~~~~  171 (255)
                      ++.|+..++.+      ++.....++.+.+.++++|+....+...  ..+.    ......+..+++ .++.+++.|.+|
T Consensus       211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~  289 (350)
T PTZ00343        211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLY  289 (350)
T ss_pred             HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHH
Confidence            99999876532      1344555568889999988877554311  0010    001112234445 455789999999


Q ss_pred             HH----HHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          172 AW----CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       172 ~~----~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      +.    ++++++|.+.+...++.|++++++|++++||++++.+++|+++++.|++++++-
T Consensus       290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            95    999999999999999999999999999999999999999999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.65  E-value=3.3e-15  Score=124.15  Aligned_cols=166  Identities=13%  Similarity=0.106  Sum_probs=134.4

Q ss_pred             chhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHH
Q 025279           42 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVF  121 (255)
Q Consensus        42 ~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~  121 (255)
                      +..-+.+++.|+.++. ..+.+                 ....+..|..+++.++.||+.|.+..||..+..+. ..-+.
T Consensus       121 d~vwvaLAvlGi~lL~-p~~~~-----------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a  181 (292)
T COG5006         121 DFVWVALAVLGIWLLL-PLGQS-----------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVA  181 (292)
T ss_pred             hHHHHHHHHHHHHhhe-eccCC-----------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHH
Confidence            7777888999998884 21211                 12345789999999999999999999998766664 77788


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH
Q 025279          122 FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF  201 (255)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~  201 (255)
                      ..+..++++.+|+..-... +   ...++.-...-+.++++++.+.|.+-..++++.++...+.+..+||.++.+.++++
T Consensus       182 ~gm~vAaviv~Pig~~~ag-~---~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~  257 (292)
T COG5006         182 VGMLVAALIVLPIGAAQAG-P---ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF  257 (292)
T ss_pred             HHHHHHHHHHhhhhhhhcc-h---hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence            8999999999998863221 1   11233446667788999999999999999999999999999999999999999999


Q ss_pred             hCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          202 LGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       202 lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      +||++++.||+|...|+.+..=..+..+|
T Consensus       258 L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         258 LGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999999999887655554433

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.64  E-value=1e-15  Score=116.19  Aligned_cols=125  Identities=22%  Similarity=0.457  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025279           97 FSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ  176 (255)
Q Consensus        97 ~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~  176 (255)
                      ++||.+.+..|+..++.| |...+.++++.+.+ +.+.....++..  ....+...+...++.+++++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            479999999999999988 79999999999998 666665544332  12223446778888999889999999999999


Q ss_pred             ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          177 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       177 ~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      +.++++++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.63  E-value=3.3e-15  Score=130.79  Aligned_cols=195  Identities=14%  Similarity=0.137  Sum_probs=140.6

Q ss_pred             ecceeeecccchhhhh-----h--HHHHhhhhhhhhcccCccc----hhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCC
Q 025279            7 CNYRYQIQLSDSCFCH-----G--QLDTGMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI   75 (255)
Q Consensus         7 ~~~~~~~~~~~~~~~~-----~--a~~~~~e~~~~~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~   75 (255)
                      ++|..++++.....+.     .  .+..+...+.+|||+++++    ++|+++.++|++++...++....          
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~----------  143 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAG----------  143 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccc----------
Confidence            5555666664443332     1  3445678889999999999    99999999999887422111000          


Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH---HHHH-HHHHHHHHhccCCCcccccchh
Q 025279           76 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCF---FGTI-QCAVVSIIVERNPSAWKLQPGI  151 (255)
Q Consensus        76 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~  151 (255)
                         .++..+...|+++.++++++|+.|.+..|+.  +++ |...++.++.   ++++ +..+.   ...  ..+  ....
T Consensus       144 ---~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~~--~~~~  210 (290)
T TIGR00776       144 ---IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH---ILA--KPL--KKYA  210 (290)
T ss_pred             ---cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH---hcc--cch--HHHH
Confidence               0000223679999999999999999999975  466 6888555544   3333 33322   111  111  1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhh----hhHHHHHHhhhhhhc
Q 025279          152 QRTAVIYAAIVGTVIRSSIIAWCLQ-KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIW  226 (255)
Q Consensus       152 ~~~~ll~lgi~~s~~~~~~~~~~l~-~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~----lG~~lI~~gv~l~~~  226 (255)
                      .+..++ .|++ ..+++.+|..+.+ +.++++++.+.+++|+.+++++++++||+.+..++    +|+++|+.|+.+...
T Consensus       211 ~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       211 ILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            344444 8887 7999999999999 99999999999999999999999999999999999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=99.62  E-value=3.9e-15  Score=127.82  Aligned_cols=168  Identities=10%  Similarity=0.076  Sum_probs=114.8

Q ss_pred             cceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 025279            4 ANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL   77 (255)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~   77 (255)
                      .+..+|.++.|+++...+.      ..+..+.+++.+|||++++++++++++++|++++... +.               
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~---------------  145 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KG---------------  145 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cC---------------
Confidence            3455666777775555443      3677788999999999999999999999999987521 00               


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHH
Q 025279           78 PVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVI  157 (255)
Q Consensus        78 ~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll  157 (255)
                           +..    .++++++++||.|.+..||..++ + +....... +...+...+... ...+.......+...|..++
T Consensus       146 -----~~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  212 (256)
T TIGR00688       146 -----SLP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLV  212 (256)
T ss_pred             -----Cch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCchhHHHHHH
Confidence                 011    35788999999999999986543 3 22222111 111111111111 11111111111223688888


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH
Q 025279          158 YAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF  201 (255)
Q Consensus       158 ~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~  201 (255)
                      ++|++ +.++|.+|++++|+.++++++.+.|++|+++++++++.
T Consensus       213 ~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       213 LAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            89985 88999999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=1.5e-14  Score=108.42  Aligned_cols=135  Identities=17%  Similarity=0.123  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279           89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  168 (255)
Q Consensus        89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~  168 (255)
                      .++++++|+.+++-.+..|-..++.+ |...+..+.+...+.+..+....++. +.....++..|..++..|+ .++++.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHHH-HHHHHH
Confidence            67999999999999999999888888 68889999888888777776654432 1111124557888888896 899999


Q ss_pred             HHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          169 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       169 ~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      .+|++++++.+++++..+.-+.|+++++++++++||+++..+++|+.+|++|++++..
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            9999999999999999999999999999999999999999999999999999887643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.58  E-value=2.2e-15  Score=126.16  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=144.1

Q ss_pred             HhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 025279           27 TGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQ  106 (255)
Q Consensus        27 ~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~  106 (255)
                      ..+.|..+|||.++...++.++.+.|+++|+  ++++..+.    +. .+.+.+..+....|...++.+++..|.-.++.
T Consensus       138 ~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv--RPpFlFG~----~t-~g~~~s~~~~~~~gt~aai~s~lf~asvyIil  210 (346)
T KOG4510|consen  138 IIFAWAFLKEPFTKFEALGSLITLLGVVLIV--RPPFLFGD----TT-EGEDSSQVEYDIPGTVAAISSVLFGASVYIIL  210 (346)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHhhheEEEEe--cCCcccCC----Cc-cccccccccccCCchHHHHHhHhhhhhHHHHH
Confidence            3467777888888889999999999999995  45554422    11 11112223445678889999999999999999


Q ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhh
Q 025279          107 AAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ-PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  185 (255)
Q Consensus       107 k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~  185 (255)
                      |+..|+.+ .+....+..+++.+..++.....+    .+..+ ...+|+..+.+|+ .+.+++.+...++|+-.|..+++
T Consensus       211 R~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGv-fgfigQIllTm~lQiErAGpvai  284 (346)
T KOG4510|consen  211 RYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGV-FGFIGQILLTMGLQIERAGPVAI  284 (346)
T ss_pred             HHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehh-hhhHHHHHHHHHhhhhccCCeeh
Confidence            99988887 477777777777776655543322    22222 2346777778898 46699999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          186 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       186 ~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      +.+.+.++|.+|.++++||.|+++.|.|+++++.+...+..+|
T Consensus       285 m~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  285 MTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             hhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            9999999999999999999999999999999998866655433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.57  E-value=2.8e-14  Score=124.65  Aligned_cols=188  Identities=22%  Similarity=0.307  Sum_probs=140.4

Q ss_pred             hhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025279           31 KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVL  110 (255)
Q Consensus        31 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~  110 (255)
                      .+...||.++.|++++.+++.|+++++..  ++.+    +       +....+....|+++++++|+.||.|.++.||..
T Consensus       204 ~if~~e~ft~sKllav~~si~GViiVt~~--~s~~----~-------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~  270 (416)
T KOG2765|consen  204 AIFPVERFTLSKLLAVFVSIAGVIIVTMG--DSKQ----N-------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKI  270 (416)
T ss_pred             HHcCcchhhHHHHHHHHHhhccEEEEEec--cccc----c-------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33335555555999999999999999632  2111    0       011234578999999999999999999999876


Q ss_pred             hhcCCcchHH---HHHHHHHHHHHHHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhh
Q 025279          111 KEYPDKINLV---FFSCFFGTIQCAVVSIIVER-NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALF  186 (255)
Q Consensus       111 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~  186 (255)
                      .+...-+.+.   .+..++..+.+.|..++... ..+.+..++..+...++..+++++.++-++|.++.-.+.+..+.+-
T Consensus       271 ~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlg  350 (416)
T KOG2765|consen  271 GDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLG  350 (416)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheee
Confidence            5542113322   23334444444444443322 2344555565667778889999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          187 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       187 ~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      +.++.+.+++.+.++-|.++++.+++|.+.|+.|.+++++..+..
T Consensus       351 mSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  351 MSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS  395 (416)
T ss_pred             eeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence            999999999999999999999999999999999999998765443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.51  E-value=6.6e-13  Score=113.01  Aligned_cols=197  Identities=9%  Similarity=0.105  Sum_probs=147.2

Q ss_pred             ccceecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCC
Q 025279            3 GANICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ   76 (255)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~   76 (255)
                      +.|+..|.++.+-.-..-+.      .-+....+++.+|||+++.|++++.++.+|+...+...|.              
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~--------------  148 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS--------------  148 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence            45677776655543222222      2455568999999999999999999999999998644331              


Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHH
Q 025279           77 LPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAV  156 (255)
Q Consensus        77 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  156 (255)
                             -+.    ..+.-|++|+.|..+-|+.  +.+ +.+-.+.-++.-.++.+...+..+.+.+......+..+..+
T Consensus       149 -------lpw----val~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LL  214 (293)
T COG2962         149 -------LPW----VALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLL  214 (293)
T ss_pred             -------CcH----HHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHH
Confidence                   122    4566788999999987664  344 35555556555555555555544433321111234467778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          157 IYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       157 l~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      +..|. .|.+...++..+-++.+-+..+.++|.+|..-.+++++++||+++..++...+.|-.|+.+...+.
T Consensus       215 v~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         215 VLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88888 688999999999999999999999999999999999999999999999999999999999987654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.45  E-value=4.4e-12  Score=111.71  Aligned_cols=196  Identities=16%  Similarity=0.215  Sum_probs=148.3

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+.++.+.+.+|+|.+++++.++++..+|+++....+.....           ...........|+++++++.++-|...
T Consensus       102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~  170 (303)
T PF08449_consen  102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTG  170 (303)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHH
Confidence            556678999999999999999999999999998633211100           000111223349999999999999999


Q ss_pred             HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHH--hccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279          104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSII--VERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      ++++|..++++. +.+..++...++.+...+....  .++..+.  +....+..+..++...+ .+.++....++..++.
T Consensus       171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~  249 (303)
T PF08449_consen  171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKF  249 (303)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence            999999765432 5778888888988888777665  2221111  11122333444444444 6778888888999999


Q ss_pred             CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      ++...+....+--+++++++++++|+++++.+|+|.++++.|..+..+.|+|+
T Consensus       250 ~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  250 SALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999988877653

; GO: 0055085 transmembrane transport

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.38  E-value=8.3e-13  Score=110.13  Aligned_cols=198  Identities=16%  Similarity=0.120  Sum_probs=146.3

Q ss_pred             eecccchhhhhh------HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccch
Q 025279           12 QIQLSDSCFCHG------QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW   85 (255)
Q Consensus        12 ~~~~~~~~~~~~------a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (255)
                      +-|||+......      -.+....++++|.|.++.|+.|+++|..|+++++.. +-..            .+....++.
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s-DV~a------------gd~aggsnp  164 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS-DVHA------------GDRAGGSNP  164 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe-eecc------------ccccCCCCC
Confidence            667765544332      223446788888888999999999999999998632 1111            111224567


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHH-HHHHH
Q 025279           86 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYA-AIVGT  164 (255)
Q Consensus        86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l-gi~~s  164 (255)
                      ..|+++++++|-+||..++....+.|+.| ..++.....++|+++..+-.++-.++...  ..+  ++-...|+ ..++.
T Consensus       165 ~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~t--l~w--~~~i~~yl~f~L~M  239 (336)
T KOG2766|consen  165 VKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVST--LHW--DSAIFLYLRFALTM  239 (336)
T ss_pred             ccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceee--Eee--hHHHHHHHHHHHHH
Confidence            89999999999999999999999999988 58888999999999988774332222221  111  22222222 44456


Q ss_pred             HHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          165 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       165 ~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      .+-|.+.-..+|..+++...+-....-.|++++  ..||.+.+|...+..+.+..|.++...+++
T Consensus       240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            666777778899999999999999999999998  668999999999999999999999865443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.36  E-value=1.2e-11  Score=108.53  Aligned_cols=139  Identities=14%  Similarity=0.153  Sum_probs=111.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccc--ccchhHHHHHHHHHH
Q 025279           84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK--LQPGIQRTAVIYAAI  161 (255)
Q Consensus        84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~lgi  161 (255)
                      +...|.+++++++++|+...+..|.. .+.+ |....+++++++.+++.++.....+ ..+..  ..+...+ .....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence            45689999999999999999999875 6677 7999999999999877766543321 11100  0011122 2334666


Q ss_pred             HHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          162 VGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       162 ~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +.....+.++++++++.+++.++...++.|++..++++++++|+++..+++|.++.+.|+.++.+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999988653

>TIGR00688 rarD rarD protein

Probab=99.31  E-value=3.8e-11  Score=103.09  Aligned_cols=136  Identities=11%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCC---CcccccchhH-HHHHHHHHHH
Q 025279           87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQ-RTAVIYAAIV  162 (255)
Q Consensus        87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~ll~lgi~  162 (255)
                      .|.+++++++++|+...+..|.. .+.+ |.+..+++++++.+++.+......+..   .......... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            48899999999999999999974 5677 799999999999988776654432110   0111111112 3345555654


Q ss_pred             HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                       ..+.+.+++++++++++..++.+.++.|++++++++++++|+++..+++|..+.+.|+.++.
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             66889999999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.29  E-value=9.3e-11  Score=102.12  Aligned_cols=133  Identities=12%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279           89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  168 (255)
Q Consensus        89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~  168 (255)
                      .++.++++++||..++++|+..++.+ +.  ..+.+..+.+.+.++...... ...+... +..+...+..+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA-QVGWSRL-PATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCc-chhhHHHHHHHHHHHHHHH
Confidence            46789999999999999998776644 33  456666666666666543211 1122222 2234444455555788999


Q ss_pred             HHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          169 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       169 ~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      .++++++++.+++.++.+.+++|+++.+++++++||+++..+++|..+++.|+.+...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.23  E-value=3.8e-10  Score=86.88  Aligned_cols=122  Identities=13%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279           87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  166 (255)
Q Consensus        87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~  166 (255)
                      .|.++.+.+.++-+...++.|+..++.++ ...... .    +. .....           ..+   ...+++|++++++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~-~~~~~-----------~~p---~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IA-ALLAF-----------GLA---LRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HH-HHHHH-----------hcc---HHHHHHHHHHHHH
Confidence            36788899999999999999998887663 332221 1    10 00000           011   1246789999999


Q ss_pred             HHHHHHHHHhccCceehhhhhchHHHHHHHHHHH--HhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM--FLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~--~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      ++.+|.+++++.+++.+..+..+.++...+.++.  ++||++++.+++|..+|++|++++.+.++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999888888885  89999999999999999999999876443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.08  E-value=3.9e-09  Score=83.26  Aligned_cols=138  Identities=14%  Similarity=0.234  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------cCCcchHHHHHHHHHHHHHHHHHHHhccCCC-c-c-ccc------chhH
Q 025279           88 GGLLLTVTCFSSATWKIFQAAVLKE------YPDKINLVFFSCFFGTIQCAVVSIIVERNPS-A-W-KLQ------PGIQ  152 (255)
Q Consensus        88 G~~l~l~aa~~~a~~~vl~k~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~-~~~------~~~~  152 (255)
                      |.++++.+.++.|++.++.|+..++      ..++.....+....+.+.+++.....+.... . . ...      .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6788999999999999999998655      2236888889999999999998887765321 1 1 000      1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          153 RTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       153 ~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +..++..|+ ...+.....++.+++.+|...++...+-.+...+.+++++||++++.+++|..+.+.|+++++|
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            445555555 5557788889999999999999999999999999999999999999999999999999987654

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.06  E-value=5e-09  Score=94.27  Aligned_cols=140  Identities=11%  Similarity=0.120  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279           87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  166 (255)
Q Consensus        87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~  166 (255)
                      .-.+.+++.-++|+.+.++.|...++--+|....++++.++++++.+++...++... .+......|..+..+|+++ .+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~~   90 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-SM   90 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-HH
Confidence            446678888899999999999987764447999999999999999988876543211 1111233567777788877 56


Q ss_pred             HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHH------hCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF------LGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~------lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      .+.++++++++++++.++++.++.|+++.++++++      ++|+++..+++|.++-++|+.+....+
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            77789999999999999999999999999999999      699999999999999999998876533

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.05  E-value=6.1e-09  Score=91.23  Aligned_cols=131  Identities=7%  Similarity=-0.019  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025279           89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  168 (255)
Q Consensus        89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~  168 (255)
                      .+..++..+.|+...+..|...++.+ |...+++++.+++++++++.....+..     .+..++......|++.....+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL-----PTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999998877787 799999999999998887765432111     123356666778887777788


Q ss_pred             HHHHHHH-hccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          169 SIIAWCL-QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       169 ~~~~~~l-~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      .+++++. ++.+++.++.+.+++|++..+++++ +||+++..+++|..+.+.|+++...
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            8999999 9999999999999999999999986 7999999999999999999988764

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.5e-08  Score=88.82  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=129.2

Q ss_pred             eecccchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHH
Q 025279           12 QIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLL   91 (255)
Q Consensus        12 ~~~~~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l   91 (255)
                      .-|+-...|++      +.++.++||.+++||.++++.+.|+.++-...++.          +++.......+...|...
T Consensus       124 t~qlKI~tTA~------f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~----------~~a~~~~~~~n~~~G~~a  187 (345)
T KOG2234|consen  124 TYQLKILTTAI------FSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP----------TGAKSESSAQNPFLGLVA  187 (345)
T ss_pred             hhhHHHHHHHH------HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC----------CCccCCCcccchhhhHHH
Confidence            34445555555      45556777788889999999999999984111111          111112334567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025279           92 LTVTCFSSATWKIFQAAVLKEYPDK-INLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSI  170 (255)
Q Consensus        92 ~l~aa~~~a~~~vl~k~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~  170 (255)
                      .+.+|+.-+...++..|..|+-..+ +.-+.-...+|.++.+...+..+.....|.- -...|-...+.-++..+++=.+
T Consensus       188 vl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~g-ff~G~s~~vw~vVl~~a~gGLl  266 (345)
T KOG2234|consen  188 VLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYG-FFYGYSSIVWLVVLLNAVGGLL  266 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCC-ccccccHHHHHHHHHHhccchh
Confidence            9999999999999999998764322 3334444456666655544433221110100 0001112222333344444445


Q ss_pred             HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      -..-+++.+--.=+....+..+++.+.++.++|-+++....+|..+++.++.++...+.++
T Consensus       267 vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  267 VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            5555666655544566667888999999999999999999999999999999988655544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.03  E-value=4.1e-09  Score=90.28  Aligned_cols=119  Identities=12%  Similarity=-0.004  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279           99 SATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus        99 ~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      |+...+..|...++..++.....++++.+.+.+.+.....         ....++...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5666677777655544478888889888888777655321         1233566677788888889999999999999


Q ss_pred             CceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          179 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       179 ~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +++.++++..++|++..++++++++|++++.+++|..+.+.|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999988754

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.02  E-value=8.7e-09  Score=85.42  Aligned_cols=187  Identities=13%  Similarity=0.164  Sum_probs=142.2

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      +.+++++.+..|++.+|++...++..+.|+++. .++.....+             ........|.++.+++--.=++-.
T Consensus       123 IPVMilGVl~~~KsY~w~kY~cVL~IV~GValF-mYK~~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg  188 (337)
T KOG1580|consen  123 IPVMILGVLFAHKSYHWRKYCCVLMIVVGVALF-MYKENKVGG-------------AEDKTFGFGELLLILSLAMDGLTG  188 (337)
T ss_pred             cceeeeehhhhcccccHHHHHHHHHHHHHHHHh-hccccccCC-------------CcccccchHHHHHHHHHHhcccch
Confidence            344556777788889999999999999999998 465443321             122346789999999988888888


Q ss_pred             HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279          104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP  180 (255)
Q Consensus       104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a  180 (255)
                      ..+.|..+++.. -...+.+..+++.+.+..-..+.++-.+.  +....|..|+-+..+++ ++.+++.+.+.-+...+|
T Consensus       189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgP  267 (337)
T KOG1580|consen  189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGP  267 (337)
T ss_pred             hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCC
Confidence            888887666432 35566777777777766544443322111  11223445677777887 899999999999999999


Q ss_pred             eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      ..-|++...--+|+++.++++++.+++.+||+|..+++.+...=.
T Consensus       268 LtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  268 LTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             eeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            999999999999999999999999999999999999999987744

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.02  E-value=7.9e-09  Score=90.82  Aligned_cols=125  Identities=10%  Similarity=0.075  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025279           90 LLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSS  169 (255)
Q Consensus        90 ~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~  169 (255)
                      ++.++++++|+...+..|...++.+ |...+++++.++++.++++..  .   ..    .  .+..++..|+......+.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~---~~----~--~~~~~~~~g~~~~~~~~~   74 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--R---PK----V--PLNLLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--C---CC----C--chHHHHHHHHHHHHHHHH
Confidence            5688899999999999998888888 799999999998776554331  1   00    0  122333445545555666


Q ss_pred             HHHHHHhc-cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          170 IIAWCLQK-KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       170 ~~~~~l~~-~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +++.++++ .++..++.+.+++|++..++++++++|+++..+++|.++.+.|+.+..+
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            77888887 5788999999999999999999999999999999999999999988764

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.01  E-value=2.4e-09  Score=80.58  Aligned_cols=108  Identities=15%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHH
Q 025279          121 FFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM  200 (255)
Q Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~  200 (255)
                      .+++.++.+.+........+..+.+.......+...+..|+++...++.++++++++.++ .++....+.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            356677777776666553321111111112235566667887777999999999999995 8889999999999999999


Q ss_pred             HhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          201 FLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       201 ~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      +++|+++..+++|.++++.|+.++.+.+.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999887553

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.98  E-value=1.1e-08  Score=89.78  Aligned_cols=131  Identities=13%  Similarity=0.083  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279           87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  166 (255)
Q Consensus        87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~  166 (255)
                      .+.+.++.++++|+......|...++.| |.....+++..+.+++.++..    .+ ...   ...+..+ ..+.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~----~~-~~~---~~~~~~~-~~~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG----FP-RLR---QFPKRYL-LAGGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc----cc-ccc---cccHHHH-HHHhHHHHH
Confidence            4577899999999999999999988998 799999999999988876531    11 111   1112222 233334445


Q ss_pred             HHHHHHHHHh----ccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          167 RSSIIAWCLQ----KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       167 ~~~~~~~~l~----~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .+.+++.+++    ..++..++.+.++.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            5555666665    457788899999999999999999999999999999999999999887653

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.90  E-value=5.3e-08  Score=83.13  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=123.2

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      .+..++.++.+|+|.+++||+++++-++|++++........+.    ++++.............|.++.++++++-+...
T Consensus        55 l~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~ag  130 (244)
T PF04142_consen   55 LFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN----SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAG  130 (244)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc----ccccccccccccchhHhHHHHHHHHHHHHHHHH
Confidence            3344567788899999999999999999999984221111000    000000011123456799999999999999999


Q ss_pred             HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCce
Q 025279          104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV  181 (255)
Q Consensus       104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~  181 (255)
                      ++..|..|+.+. ....+....++|.++.++.....+.. ..+.....  .+-...+.-++...++=.+....+|+.+.-
T Consensus       131 Vy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI  208 (244)
T PF04142_consen  131 VYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNI  208 (244)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHH
Confidence            999999887532 34445556666777666554433221 11111101  111222334444555556677778888877


Q ss_pred             ehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279          182 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI  217 (255)
Q Consensus       182 ~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI  217 (255)
                      .=+....+.-+.+.+.+++++|.+++....+|+.++
T Consensus       209 ~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  209 VKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            778888889999999999999999999999998653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.88  E-value=2.3e-09  Score=94.03  Aligned_cols=186  Identities=13%  Similarity=0.141  Sum_probs=144.1

Q ss_pred             HHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 025279           25 LDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKI  104 (255)
Q Consensus        25 ~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v  104 (255)
                      +....+++..+|+.++.....++....|+.+-..                     ++.+.+..|.+.++.+.+..+..++
T Consensus       122 ~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~---------------------~e~~fn~~G~i~a~~s~~~~al~~I  180 (316)
T KOG1441|consen  122 FTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV---------------------TELSFNLFGFISAMISNLAFALRNI  180 (316)
T ss_pred             hHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee---------------------ccccccHHHHHHHHHHHHHHHHHHH
Confidence            3446899999999999999999999999988752                     1223568999999999999999999


Q ss_pred             HHHHHHh----hcCCcchHHHHHHHHHHHHHH-HHHHHhccCCC-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025279          105 FQAAVLK----EYPDKINLVFFSCFFGTIQCA-VVSIIVERNPS-AWKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQK  177 (255)
Q Consensus       105 l~k~~~~----~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~-~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~  177 (255)
                      +.|+..+    +.+ ++....++.-++.+.++ |+....++... .+.. ++......+++.. +....-+..-++.+.+
T Consensus       181 ~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~  258 (316)
T KOG1441|consen  181 LSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGR  258 (316)
T ss_pred             HHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcc
Confidence            9999874    255 58888888888888888 77765444322 0011 1121233333334 3555566777899999


Q ss_pred             cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccccc
Q 025279          178 KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  233 (255)
Q Consensus       178 ~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~  233 (255)
                      +.|.+-++...+--.+.++.+|+++++++++.+..|.++.++|++++++.|.++++
T Consensus       259 tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  259 TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999987766543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.87  E-value=1e-07  Score=85.70  Aligned_cols=125  Identities=10%  Similarity=0.053  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279          100 ATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG  179 (255)
Q Consensus       100 a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~  179 (255)
                      ..+++.+|...++.|.|+.++.++++++.+.+.++........++.. .....|..++.+|++... .+...+.++++.+
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF-VHFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence            44567888888888757999999999998876544321111111111 122356778888886654 4777789999999


Q ss_pred             ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      ++.++.+..++|++.+++++++++|+++..+++|.+++++|+.+...
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            99999999999999999999999999999999999999999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.86  E-value=8.1e-08  Score=84.44  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279          101 TWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP  180 (255)
Q Consensus       101 ~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a  180 (255)
                      .+++++|...++.+.|...+.+++..+.+...+. .... ...... .+..+|..++..|++. .+.+.+.+++++++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSG-LPKRLK-ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhC-CCCCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccH
Confidence            4456778888876668999999999987766544 1111 111111 1234677888889874 6788999999999999


Q ss_pred             eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      +.++.+..+.|++..++++++++|+++..+++|.++++.|+.+..
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999997753

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.82  E-value=4.7e-08  Score=73.39  Aligned_cols=67  Identities=15%  Similarity=0.014  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          159 AAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      .++++.++++.+|.+++++.|.+++....++.++++.++|++++||++++.+++|..+++.|+.++.
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3446778899999999999999999999999999999999999999999999999999999998754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.74  E-value=1.4e-07  Score=80.79  Aligned_cols=141  Identities=11%  Similarity=0.125  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCccc-ccchhHHHHHHHHHHHH
Q 025279           85 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK-LQPGIQRTAVIYAAIVG  163 (255)
Q Consensus        85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~lgi~~  163 (255)
                      ...|+++.+.+-+.|+.-..+.|-. ++.| +.++..++.+++.+.++.+.....+....+. ...+..+......++. 
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence            4589999999999999999998764 6677 6999999999999988877665544322222 2234456666666664 


Q ss_pred             HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ...-..+|.|+..+....++|+-.++.|++.+++|.+|++|+++..|++..++..+||....+..
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            55889999999999999999999999999999999999999999999999999999998877654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.66  E-value=1.1e-06  Score=75.85  Aligned_cols=142  Identities=13%  Similarity=0.124  Sum_probs=105.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHH
Q 025279           85 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGT  164 (255)
Q Consensus        85 ~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s  164 (255)
                      ...+....+..++.|+......|...++..++......+...+.+...+.....  .......  ...+......+.+..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE--PRGLRPA--LRPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh--ccccccc--ccchHHHHHHHHHHH
Confidence            456788888888999999999988776623234444557776666633333211  1111111  111445566777788


Q ss_pred             HHHHHHHHHHHhccCceehhhhhchHHHHHHHHHH-HHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          165 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV-MFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       165 ~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~-~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      ...+.+++.++++.++..++.+.++.|++..++++ ++++|++++.++.|..+.+.|+.++.++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            89999999999999999999999999999999997 7779999999999999999999998875543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.64  E-value=5.8e-07  Score=77.29  Aligned_cols=193  Identities=14%  Similarity=0.149  Sum_probs=142.3

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      ..+++..++..|+|.+..+-+...+.-.|+.+..+.+.++            +...+...+..+|..++...-..=+.-+
T Consensus       121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn  188 (327)
T KOG1581|consen  121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGFTN  188 (327)
T ss_pred             hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence            6677889999999999999999999999998875432211            0111233456789999888777777777


Q ss_pred             HHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279          104 IFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG  179 (255)
Q Consensus       104 vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~  179 (255)
                      ..+.++.++  .. +...+++..+++.+......+..++..+.  +-...+..+.-++.... ++.+++.+-++-+++-|
T Consensus       189 ~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FG  266 (327)
T KOG1581|consen  189 ATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFG  266 (327)
T ss_pred             hHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcc
Confidence            777777664  23 46677777777777665543322222221  11122334555666666 66799999999999999


Q ss_pred             ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      +..-+.++.+==+++++++.+.+|.++++.||+|..+++.|+.+-...|++
T Consensus       267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999886665544

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.58  E-value=4.3e-06  Score=72.07  Aligned_cols=175  Identities=16%  Similarity=0.190  Sum_probs=117.4

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      +..+.+|++.+      .-..-+++...|+++++ ++..                    +.+..|..+.++++++-++--
T Consensus       128 s~if~lEk~~w------~L~l~v~lI~~Glflft-~KsT--------------------qf~i~Gf~lv~~aS~~sGlRW  180 (349)
T KOG1443|consen  128 SLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKST--------------------QFNIEGFFLVLAASLLSGLRW  180 (349)
T ss_pred             HHHHHhHHHHH------HHHHHHHHHhhheeEEE-eccc--------------------ceeehhHHHHHHHHHhhhhhH
Confidence            44555555444      48888888889999885 4332                    235678888887777766666


Q ss_pred             HHHHHHHhhcC----CcchHHHHHHHHHHHHHHHHHHHhccCCC-----cccccchh-HHHHHHHHHHHHHHHHHHH---
Q 025279          104 IFQAAVLKEYP----DKINLVFFSCFFGTIQCAVVSIIVERNPS-----AWKLQPGI-QRTAVIYAAIVGTVIRSSI---  170 (255)
Q Consensus       104 vl~k~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~-~~~~ll~lgi~~s~~~~~~---  170 (255)
                      .+.+...++.|    +|++......-.-.+.+++..+..|+...     .+....+. .+..+.+++. +...++.+   
T Consensus       181 ~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~s  259 (349)
T KOG1443|consen  181 AFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFS  259 (349)
T ss_pred             HHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHH
Confidence            66666655543    26776666666666667777777776321     12211221 2222333333 33344433   


Q ss_pred             HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      -+..+.+++....++....--+-..+++.++.+++++...|+|..+...|+.+...
T Consensus       260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            35667778888889998889999999999999999999999999999999998744

>TIGR00803 nst UDP-galactose transporter

Probab=98.50  E-value=1.5e-06  Score=73.06  Aligned_cols=194  Identities=13%  Similarity=0.091  Sum_probs=112.8

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCC--C------CCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPL--L------GFSSPSNSNIQLPVSEYSNWALGGLLLTVT   95 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a   95 (255)
                      .+..+.+....++|.+..|+++.++...|++.....+.+..  .      ...+.+..  ........+...|....+.+
T Consensus        16 ~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--~~~~~~~g~~~~g~~~~l~a   93 (222)
T TIGR00803        16 VLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--SAKTLMFGNPVVGLSAVLSA   93 (222)
T ss_pred             HHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC--CccccccccHHHHHHHHHHH
Confidence            44555666667777667788888887777765321100000  0      00000000  00001112456777778888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHHHHHHHhccC-CCccc--ccchhHHHHHHHHHHHHHHHHHHHH
Q 025279           96 CFSSATWKIFQAAVLKEYPDKINL-VFFSCFFGTIQCAVVSIIVERN-PSAWK--LQPGIQRTAVIYAAIVGTVIRSSII  171 (255)
Q Consensus        96 a~~~a~~~vl~k~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~lgi~~s~~~~~~~  171 (255)
                      +++-+...++.++..++.+..... +....+++.+.........+.. ...+.  ...+..    .+.-++....+..+.
T Consensus        94 ~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~v  169 (222)
T TIGR00803        94 LLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTA----VWIVGLLNVGGGLCI  169 (222)
T ss_pred             HHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchH----HHHHHHHHHhcCcee
Confidence            888778888888875554321111 1122223333211111111111 11111  011111    112223566777889


Q ss_pred             HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279          172 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  223 (255)
Q Consensus       172 ~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l  223 (255)
                      .+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus       170 ~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       170 GGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             eehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            9999999999999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=4.3e-06  Score=72.60  Aligned_cols=186  Identities=14%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      ......|...++.|+++..+.++..-.+|...-..                     .+.+.+..|..|++..+++-+.+.
T Consensus       115 i~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~---------------------~d~sf~~~gY~w~~~n~~~~a~~~  173 (314)
T KOG1444|consen  115 ILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF---------------------TDLSFNLRGYSWALANCLTTAAFV  173 (314)
T ss_pred             HHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc---------------------ccceecchhHHHHHHHHHHHHHHH
Confidence            55667899999999999999999998888777631                     112334568999999999999999


Q ss_pred             HHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccCCC-ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025279          104 IFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERNPS-AWK---LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQK  177 (255)
Q Consensus       104 vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~---~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~  177 (255)
                      +..|+..+.  .. ....+++..++..+.+....++.++... ...   ......+..+...++.+- +-..+-++..+.
T Consensus       174 v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf-~isy~s~~ct~~  251 (314)
T KOG1444|consen  174 VYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGF-GISYTSFLCTRV  251 (314)
T ss_pred             HHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence            999987543  33 3677889999999988888877654110 011   112234566666677544 444566788888


Q ss_pred             cCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccc
Q 025279          178 KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES  232 (255)
Q Consensus       178 ~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~  232 (255)
                      .+++..+......-....+-..+++|++.++..++|..+-++|=.+..+.+.+++
T Consensus       252 ~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  252 NSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             ccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            8998888888888888899999999999999999999998888777777665443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.50  E-value=1.8e-06  Score=75.72  Aligned_cols=132  Identities=11%  Similarity=0.083  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279           88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  167 (255)
Q Consensus        88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~  167 (255)
                      |.++.++++++|+...+..|+.. ..+ +....  ...++.+++........+ +. ..  ....+..-+..|+ .-.++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~-~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-PE-FW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc-cc--ccHHHHHHHHHHH-HHHhh
Confidence            57889999999999999998865 444 23332  355566655544443322 11 11  1222332333333 25678


Q ss_pred             HHHHHHHHhccCceehhhhhc-hHHHHHHHHHHHHhCCCCchhh----hhhHHHHHHhhhhhhccc
Q 025279          168 SSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       168 ~~~~~~~l~~~~a~~~s~~~~-l~Pi~a~l~~~~~lgE~~~~~~----~lG~~lI~~gv~l~~~~~  228 (255)
                      +.+|+.++|+.+.+.+-.+.+ ++|+++.+++.+++||+.+..+    ++|.++++.|+++....+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            899999999999999988888 9999999999999999999999    999999999988875543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.46  E-value=3.8e-06  Score=63.66  Aligned_cols=70  Identities=14%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          159 AAIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       159 lgi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ..++..++++.++.+++|+.|...+ +...-+.-+..++.+++++||++++.+++|..+|+.|++..+...
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3455677899999999999999988 666788999999999999999999999999999999998886544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.46  E-value=5.3e-06  Score=72.69  Aligned_cols=128  Identities=11%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHH
Q 025279           84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVG  163 (255)
Q Consensus        84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~  163 (255)
                      +...|..++++++++|+......|...++.| |....+++++++.+++.++......     .. +..++...+..|+. 
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~-----~~-~~~~~~~~~~~g~~-   80 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL-----RF-AKEQRLPLLFYGVS-   80 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc-----cC-CHHHHHHHHHHHHH-
Confidence            3468999999999999999999999888888 7999999999999888765432111     11 22345566667764 


Q ss_pred             HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      ....+.++++++++.+++.++.+.++.|++..+++.    |++..  ..+..+.+.|+.++.
T Consensus        81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~  136 (293)
T PRK10532         81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence            567788899999999999999999999999998873    55544  455667788887765

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.37  E-value=1.6e-05  Score=67.74  Aligned_cols=206  Identities=13%  Similarity=0.158  Sum_probs=122.2

Q ss_pred             eecccchhhhhh-----HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCC-Ccccccch
Q 025279           12 QIQLSDSCFCHG-----QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL-PVSEYSNW   85 (255)
Q Consensus        12 ~~~~~~~~~~~~-----a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   85 (255)
                      -.+.+.|.-.++     ..-+...++..++|.+.+|..++++.-+|+++-++.+....+...   .+-..+ +.++..-+
T Consensus        86 ~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~---~~l~~~~~~~~~~~w  162 (330)
T KOG1583|consen   86 KFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKL---SGLDSGSAQSDFFWW  162 (330)
T ss_pred             eecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhh---cccccCcccccchHH
Confidence            444455544442     334457888889999999999999999999998754333222100   000111 11223346


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHH-Hhcc-----CCCcc-----cccchhHH
Q 025279           86 ALGGLLLTVTCFSSATWKIFQAAVLKEYP-DKINLVFFSCFFGTIQCAVVSI-IVER-----NPSAW-----KLQPGIQR  153 (255)
Q Consensus        86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~-----~~~~~-----~~~~~~~~  153 (255)
                      ..|+.+...+-+.-|.-.+.+.+.-+++. ++-+..++.=.+..+..+...- +..+     ..+.+     ...-|..|
T Consensus       163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~  242 (330)
T KOG1583|consen  163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW  242 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence            78888777777766666555555444321 1355566665555554443321 0000     00101     11112234


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          154 TAVIYAAIVGTVIRSSII----AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       154 ~~ll~lgi~~s~~~~~~~----~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      ..++     ...+.+..-    +..-.+..+.++++...+--.++.+++++.++.++++.+|+|..+++.|-++..
T Consensus       243 ~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  243 VYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             HHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            3332     223333332    333445567788999999999999999999999999999999999999987754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.26  E-value=6.2e-06  Score=61.65  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      .+++..+++.++..++|+.|...+ +...-+.-+..++++++++||++++.+++|..+|+.|++..+...
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            455677899999999999999988 777888999999999999999999999999999999999986543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.20  E-value=9.2e-06  Score=69.32  Aligned_cols=191  Identities=16%  Similarity=0.205  Sum_probs=128.0

Q ss_pred             hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 025279           23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW  102 (255)
Q Consensus        23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~  102 (255)
                      +.+.-++....+++++..++|+|++...+|++++. ..+-...          ..+-.+.++...|+++.+.+-+.-|+-
T Consensus       123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg-~~d~~~~----------~~p~~d~s~iitGdllIiiaqiivaiQ  191 (372)
T KOG3912|consen  123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG-SLDVHLV----------TDPYTDYSSIITGDLLIIIAQIIVAIQ  191 (372)
T ss_pred             hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee-eeecccc----------cCCccccccchhhhHHHHHHHHHHHHH
Confidence            45666678888899999999999999999999983 2111110          011123456788999999999999999


Q ss_pred             HHHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHHHhccC--CCcccccch---hHHH---------HHHHHHHHHHHH
Q 025279          103 KIFQAAVLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERN--PSAWKLQPG---IQRT---------AVIYAAIVGTVI  166 (255)
Q Consensus       103 ~vl~k~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~---~~~~---------~ll~lgi~~s~~  166 (255)
                      .++-.|..++  ++ |...+.|..++|.+++..++.++..-  ...++..+.   .+|.         ..+++...+..+
T Consensus       192 ~v~Eek~l~~~nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~v  270 (372)
T KOG3912|consen  192 MVCEEKQLKKSNVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTV  270 (372)
T ss_pred             HHHHHhhhhhccCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhh
Confidence            9998887654  45 79999999999977766555433110  001111110   1111         122333333334


Q ss_pred             HHHHHH---HHH-hccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          167 RSSIIA---WCL-QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       167 ~~~~~~---~~l-~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      .-.+++   .++ +..++++=.++-.+-..+.=+++.....|.++..|+.|..+...|.++++
T Consensus       271 SiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  271 SIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             heeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433443   223 33456666777777777777888888999999999999999999999886

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.18  E-value=4.7e-07  Score=76.60  Aligned_cols=137  Identities=17%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHH
Q 025279           84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVG  163 (255)
Q Consensus        84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~  163 (255)
                      ...+|..+..++ ..+....++.++..++.  |......+++.-.++..+-.+..-+.    ...+...-.++++=|+.+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~----v~gp~g~R~~LiLRg~mG  107 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP----VIGPEGKRKWLILRGFMG  107 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee----eecCCCcEEEEEeehhhh
Confidence            455788888777 77777888888876664  47766666444444333322211111    111112223344445544


Q ss_pred             HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      + .+....+|++++++-+.+.++.+..|+++++++|.+++|+.+....+|..+.+.||.++.+..
T Consensus       108 ~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  108 F-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             h-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            3 667788899999999999999999999999999999999999999999999999999987654

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.17  E-value=3.4e-05  Score=65.65  Aligned_cols=187  Identities=11%  Similarity=0.148  Sum_probs=135.3

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      ..++.++.+.-+.|..+.+..+..+-.+|+++.++.+. ..                .+..+..|..+.-.|-++=|.--
T Consensus       144 iPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs-~~----------------sPNF~~~Gv~mIsgALl~DA~iG  206 (367)
T KOG1582|consen  144 IPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS-QT----------------SPNFNLIGVMMISGALLADAVIG  206 (367)
T ss_pred             hhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc-cc----------------CCCcceeeHHHHHHHHHHHHHhh
Confidence            44556677777888889999999999999999874311 11                12335689888888888888777


Q ss_pred             HHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcccc--cchh-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279          104 IFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAWKL--QPGI-QRTAVIYAAIVGTVIRSSIIAWCLQKKG  179 (255)
Q Consensus       104 vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~~ll~lgi~~s~~~~~~~~~~l~~~~  179 (255)
                      .++.+..+.++. ..+..++....|.+.++......++-++.|..  ..+. .....++... .+.++...---.++.-+
T Consensus       207 NvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fG  285 (367)
T KOG1582|consen  207 NVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFG  285 (367)
T ss_pred             HHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhc
Confidence            777777776553 35566777778887776665554443333322  1111 2233333333 55566666677788889


Q ss_pred             ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      |..++.+...---+++++++++|..++|....-|..+++.|+++..+.|
T Consensus       286 A~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  286 ALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             hhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            9999999999999999999999999999999999999999999987766

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=3.5e-06  Score=71.63  Aligned_cols=200  Identities=13%  Similarity=0.063  Sum_probs=131.9

Q ss_pred             eeecccchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHH
Q 025279           11 YQIQLSDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL   90 (255)
Q Consensus        11 ~~~~~~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   90 (255)
                      .+=.++.+++.+..++      .+|+|.+..-..+.++.++|-.+=+ ++.                 ++++.....|.+
T Consensus       133 vgRsLttvFtVlLtyv------llkqkTs~~~~~~C~lIi~GF~lGv-dqE-----------------~~~~~ls~~Gvi  188 (347)
T KOG1442|consen  133 VGRSLTTVFTVLLTYV------LLKQKTSFFALGCCLLIILGFGLGV-DQE-----------------GSTGTLSWIGVI  188 (347)
T ss_pred             eccchhhhHHHHhHHh------hcccccccccceeehhheehheecc-ccc-----------------cccCccchhhhH
Confidence            3556677777665444      4566655555555555555533311 111                 112334578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHHHHHHHHHHHHH
Q 025279           91 LLTVTCFSSATWKIFQAAVLKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAW---KLQPGIQRTAVIYAAIVGTVI  166 (255)
Q Consensus        91 l~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~lgi~~s~~  166 (255)
                      ++..+.++-|+..+..||......+ -...+.+..+.+.+..+|...+.+.--..+   ..+....|..+...|+++-.+
T Consensus       189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m  268 (347)
T KOG1442|consen  189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM  268 (347)
T ss_pred             HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999976544332 466788888999998888877654311111   122334677777777766655


Q ss_pred             HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccccccc
Q 025279          167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT  235 (255)
Q Consensus       167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~~~~  235 (255)
                      +|.. .+=+|-+.|.+=.+...--...=.++++.+++|.-+..-|-|-++++.|-....+-|++++++.
T Consensus       269 gyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  269 GYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             hhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            5443 3445555665555555555666678889999999999999999999999988888777665543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.13  E-value=7.9e-05  Score=66.35  Aligned_cols=138  Identities=12%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 025279           87 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  166 (255)
Q Consensus        87 ~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~  166 (255)
                      .|-.+.++-+.+-...+.+.++   +.+.|..-+++..+.-.++..+......+ ...+.......|+..+.+++ .=..
T Consensus        17 lgQ~lsl~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~-~~~~~~~~~~~~w~y~lla~-~Dv~   91 (334)
T PF06027_consen   17 LGQVLSLCITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRRG-FKKWLKVLKRPWWKYFLLAL-LDVE   91 (334)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhccc-cccchhhcchhHHHHHHHHH-HHHH
Confidence            4445555555555555555544   22224555555555544444443332211 11111111234666666776 4558


Q ss_pred             HHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccc
Q 025279          167 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       167 ~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      +..+...+.++++.+.+.++....-++.+++++++++++.++.+++|+++.++|+.++.....
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            999999999999999999999999999999999999999999999999999999998876543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.11  E-value=1.2e-05  Score=65.41  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=126.4

Q ss_pred             cchhhhhhHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 025279           16 SDSCFCHGQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVT   95 (255)
Q Consensus        16 ~~~~~~~~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a   95 (255)
                      |+...+=.++++++.++.++.|....|+++.+++..|++++... +.                  .......|+..+..+
T Consensus        83 sai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~-DN------------------~~a~e~iGi~~AV~S  143 (290)
T KOG4314|consen   83 SAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA-DN------------------EHADEIIGIACAVGS  143 (290)
T ss_pred             HHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec-cc------------------hhhhhhhhHHHHHHH
Confidence            44444446899999999999999999999999999999999522 11                  113467999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH-----HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025279           96 CFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAV-----VSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSI  170 (255)
Q Consensus        96 a~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~  170 (255)
                      +..-|+|.++.|+...+-+ -=........+|..=+..     +.+.+. ..+.|......-|..+.....+ +.--..+
T Consensus       144 A~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~  220 (290)
T KOG4314|consen  144 AFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHLQSFAAAPWGCLCGAAGL-SLAFNFL  220 (290)
T ss_pred             HHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHHHHHhhCCchhhhhHHHH-HHHHhhh
Confidence            9999999999999876533 122222232333322111     111111 1122211011125554333332 2223345


Q ss_pred             HHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          171 IAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       171 ~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      .+.++....|-..|.-+.+..+--...+.++-+-..+.....|..+|..|.++.....
T Consensus       221 iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  221 INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            5677788888888888888888888999987777788899999999999988876543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.06  E-value=2.3e-05  Score=68.99  Aligned_cols=122  Identities=20%  Similarity=0.163  Sum_probs=90.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 025279           83 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV  162 (255)
Q Consensus        83 ~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~  162 (255)
                      .++..|..+++.++++.+...+++|+...|.+. ...-.-.        -...         + ..++ .|+    .|..
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~--------~~~~---------~-l~~~-~W~----~G~~   58 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS--------GGRS---------Y-LRRP-LWW----IGLL   58 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc--------hhhH---------H-HhhH-HHH----HHHH
Confidence            357899999999999999999999998666542 1000000        0000         0 0111 222    2444


Q ss_pred             HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ...++..+.+.++...|++.++.+..+.-++..+++-+++||+++...++|+.+++.|..+.....
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            555667778889999999999999999999999999999999999999999999999987765433

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.05  E-value=2.5e-05  Score=57.49  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .+++...+|.+...++|++|...+ ++..-...+..++.++++|||+++..+++|..++++|+...+..
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            334667899999999999999988 99999999999999999999999999999999999999887653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.98  E-value=0.00028  Score=60.72  Aligned_cols=171  Identities=16%  Similarity=0.164  Sum_probs=106.5

Q ss_pred             hhhhhhhcccCccc----hhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 025279           29 MEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKI  104 (255)
Q Consensus        29 ~e~~~~~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v  104 (255)
                      ...+.++|-.+..+    .+++++.++|+++-... +...+            ..+++.+...|.+..+++.+.|..|.+
T Consensus        89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~-~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~  155 (269)
T PF06800_consen   89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ-DKKSD------------KSSSKSNMKKGILALLISTIGYWIYSV  155 (269)
T ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc-ccccc------------ccccccchhhHHHHHHHHHHHHHHHHH
Confidence            34445555443333    34667777787775422 21110            001134567899999999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHH-HHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceeh
Q 025279          105 FQAAVLKEYPDKINLVFFSCFFGTIQC-AVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFV  183 (255)
Q Consensus       105 l~k~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~  183 (255)
                      ..|.  .+.+ +.....=+. .|.++. ..+..+.++...+     ...|.. +.-|+ .=.++..++..+.++.+.+..
T Consensus       156 ~~~~--~~~~-~~~~~lPqa-iGm~i~a~i~~~~~~~~~~~-----k~~~~n-il~G~-~w~ignl~~~is~~~~G~a~a  224 (269)
T PF06800_consen  156 IPKA--FHVS-GWSAFLPQA-IGMLIGAFIFNLFSKKPFFE-----KKSWKN-ILTGL-IWGIGNLFYLISAQKNGVATA  224 (269)
T ss_pred             HHHh--cCCC-hhHhHHHHH-HHHHHHHHHHhhcccccccc-----cchHHh-hHHHH-HHHHHHHHHHHhHHhccchhh
Confidence            9775  3444 455544332 222222 2222222211111     111222 23344 345788889999999999999


Q ss_pred             hhhhchHHHHHHHHHHHHhCCCCchh----hhhhHHHHHHhhhh
Q 025279          184 ALFKPLGTAIAVFMAVMFLGETPHLG----SLIGTVVIAFGFYA  223 (255)
Q Consensus       184 s~~~~l~Pi~a~l~~~~~lgE~~~~~----~~lG~~lI~~gv~l  223 (255)
                      =.+..+.++++.+.+.+++||+=+..    .++|+++++.|..+
T Consensus       225 f~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  225 FTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999987764    45788888877654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.98  E-value=4.1e-05  Score=56.68  Aligned_cols=66  Identities=17%  Similarity=0.389  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +++...++.++..++|+.|...+ +...-+.-+.+.+.+++++||++++.+++|..+|+.|+...+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            45677899999999999999988 8888899999999999999999999999999999999988754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.98  E-value=0.00021  Score=62.96  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=85.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHH
Q 025279          116 KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAV  195 (255)
Q Consensus       116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~  195 (255)
                      |..+++.|+....+...+..........     ....+......++ ...++..+-+.++++++...-.+.....|+..+
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm  105 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKYISYPTQIVFKSSKPIPVM  105 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence            5788888888888877665543331111     1111333344455 566888899999999999999999999999999


Q ss_pred             HHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccccc
Q 025279          196 FMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES  232 (255)
Q Consensus       196 l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~~  232 (255)
                      ++++++++++.+..++++..++.+|+.+....+.+++
T Consensus       106 i~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen  106 ILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            9999999999999999999999999999887654433

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.98  E-value=0.00012  Score=54.48  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      +.+..++|.+...++|+.|...+ +...-+.-+..++.+++++||++++.+++|..+|+.|+...+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999999999988 888889999999999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.96  E-value=3e-05  Score=68.22  Aligned_cols=196  Identities=12%  Similarity=0.163  Sum_probs=99.4

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCC-CCcccccchhhHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ-LPVSEYSNWALGGLLLTVTCFSSATW  102 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~l~l~aa~~~a~~  102 (255)
                      .+-....+..+|||++++++.|..++++|..++... ++..+...     +.+ ......+...... ..+...+...+.
T Consensus        88 v~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~-~~~~~~~~-----t~~~l~~~~~~~~fl~y-~~~~~~~~~~L~  160 (300)
T PF05653_consen   88 VFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF-APKEEPIH-----TLDELIALLSQPGFLVY-FILVLVLILILI  160 (300)
T ss_pred             hhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe-CCCCCCcC-----CHHHHHHHhcCcceehh-HHHHHHHHHHHH
Confidence            455667888999999999999999999999888533 22111000     000 0000000001111 111111222222


Q ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHH---HHHHhccCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025279          103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAV---VSIIVERNP-SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      ....+|..++ + .........++|+...+.   ++....... .+.....+..|..++.+ +.+......+.++++++.
T Consensus       161 ~~~~~r~g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~f  237 (300)
T PF05653_consen  161 FFIKPRYGRR-N-ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRF  237 (300)
T ss_pred             Hhhcchhccc-c-eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            2222222222 1 122222222333322111   111111111 01111223334433333 335667788889999999


Q ss_pred             Cceehhhhhc-hHHHHHHHHHHHHhCCC--Cch----hhhhhHHHHHHhhhhhhcccc
Q 025279          179 GPVFVALFKP-LGTAIAVFMAVMFLGET--PHL----GSLIGTVVIAFGFYAVIWAQG  229 (255)
Q Consensus       179 ~a~~~s~~~~-l~Pi~a~l~~~~~lgE~--~~~----~~~lG~~lI~~gv~l~~~~~~  229 (255)
                      +++.+.+..+ .--..+++-|.++++|.  .+.    ....|+.+++.|+++....|+
T Consensus       238 d~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  238 DTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             cceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            9998765554 45667777788899984  444    345778888999988775543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.95  E-value=2.5e-05  Score=64.69  Aligned_cols=189  Identities=14%  Similarity=0.175  Sum_probs=132.4

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK  103 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  103 (255)
                      ..+..+|...++.|.+........+-++--+.-. +.+.             +...-.......|.+|+...+++-+.|-
T Consensus       106 I~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~-w~D~-------------q~~~~~~~~lN~GY~Wm~~NclssaafV  171 (309)
T COG5070         106 ILIAYGEVLFFGGRVTSLELLSFILMVLSSVVAT-WGDQ-------------QASAFKAQILNPGYLWMFTNCLSSAAFV  171 (309)
T ss_pred             ehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhc-cchh-------------hHHHHHhcccCCceEEEehhhHhHHHHH
Confidence            5566789999998877777666554443333221 1111             1001111234568999999999999999


Q ss_pred             HHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCCCc-ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279          104 IFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA-WKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG  179 (255)
Q Consensus       104 vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~  179 (255)
                      +..|+..+  +..+ ...++|..+++.+++..+..+.+.+.+. ... .++..+.++...|+ ++..--.+-.|.++-..
T Consensus       172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtS  249 (309)
T COG5070         172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTS  249 (309)
T ss_pred             HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehh
Confidence            98887644  3443 7788999999999999999887754322 111 12223456666666 66666678889999999


Q ss_pred             ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      .+.-+.+..+.-.-..+.|.+++||+.+...+....+-..+-.+....|
T Consensus       250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak  298 (309)
T COG5070         250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877665444444433

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.82  E-value=0.00051  Score=53.49  Aligned_cols=130  Identities=14%  Similarity=0.071  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhHHHHHHHHHHHHHHHH
Q 025279           89 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIR  167 (255)
Q Consensus        89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgi~~s~~~  167 (255)
                      .++.+.+.++.++-..++.++.++..+|+..+.+.+..|.+.+..+..+.++. ......   ..|+.. .-|+ .+...
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~---~p~w~~-lGG~-lG~~~   77 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSS---VPWWAY-LGGL-LGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhcc---CChHHh-ccHH-HHHHH
Confidence            46778888888888888888888876579999999999999988777766542 222211   112221 2444 45566


Q ss_pred             HHHHHHHHhccCceeh-hhhhchHHHHHHHHHHH----HhCCCCchhhhhhHHHHHHhhhh
Q 025279          168 SSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM----FLGETPHLGSLIGTVVIAFGFYA  223 (255)
Q Consensus       168 ~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~----~lgE~~~~~~~lG~~lI~~gv~l  223 (255)
                      -.+..+.+++.+++.+ .....-|-+.+.+++.+    .-++++++.+++|.++++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            7788888999998866 66667788889999986    34568999999999999999864

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.66  E-value=0.00047  Score=49.92  Aligned_cols=58  Identities=26%  Similarity=0.399  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHH
Q 025279          160 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI  217 (255)
Q Consensus       160 gi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI  217 (255)
                      .+.+.++++.++.+++|+.|.+.+ +...-+..+...+.+++++||++++.+++|..+|
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334677889999999999999998 7777899999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.58  E-value=0.00056  Score=61.10  Aligned_cols=138  Identities=14%  Similarity=0.113  Sum_probs=93.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH---HHHH-HHHHHhccCC-CcccccchhHHHHHHH
Q 025279           84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGT---IQCA-VVSIIVERNP-SAWKLQPGIQRTAVIY  158 (255)
Q Consensus        84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~---l~~~-~~~~~~~~~~-~~~~~~~~~~~~~ll~  158 (255)
                      +...|.++.+++++||+.+.+=.|| .++++  .+.. |- ..+.   ++.. ..+....+++ +.....+...+..-+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            3578999999999999999999988 46664  4443 43 2222   2111 0111111121 1122123344555556


Q ss_pred             HHHHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCCCC---c----hhhhhhHHHHHHhhhhhhcc
Q 025279          159 AAIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETP---H----LGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       159 lgi~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~---~----~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .|++ =.++...+..++|+.+.++. .+..-++-+.+.+++.+++||=.   +    ..-++|.++++.|+.+..+.
T Consensus        79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            6664 45899999999999998876 66677899999999999999733   2    24568888999999998873

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.0045  Score=48.55  Aligned_cols=140  Identities=11%  Similarity=0.063  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 025279           86 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTV  165 (255)
Q Consensus        86 ~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~  165 (255)
                      .+..+..+++.++..+-+-++.++.+...+|.......+..|.+.+..+.++.++.+..-...+. -|+. ..-|++ ..
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~-pwW~-~~GG~l-Ga   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASA-PWWA-WIGGLL-GA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCC-chHH-HHccch-hh
Confidence            45677888899999999988888888777789999999999999998888775443321111111 1221 122332 22


Q ss_pred             HHHHHHHHHHhccCce-ehhhhhchHHHHHHHHHHHHhC----CCCchhhhhhHHHHHHhhhhhhccc
Q 025279          166 IRSSIIAWCLQKKGPV-FVALFKPLGTAIAVFMAVMFLG----ETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       166 ~~~~~~~~~l~~~~a~-~~s~~~~l~Pi~a~l~~~~~lg----E~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      +--..-....++.+++ .+...-.-|-+.+.+.+-+=+.    .+++...++|.+++++|+++.+.++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            3333445667777766 5578888899999999987444    5799999999999999966655433

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.41  E-value=0.00087  Score=57.28  Aligned_cols=69  Identities=10%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      ...+...+.+.++++.+|+.-.....+..++++++++++++++++..||++..+.+.|+.+........
T Consensus        26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            356778889999999999999999999999999999999999999999999999999999987765544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.20  E-value=0.036  Score=49.64  Aligned_cols=175  Identities=18%  Similarity=0.073  Sum_probs=97.6

Q ss_pred             cchhhhHhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHH-------HHHHHHH-hh
Q 025279           41 AKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK-------IFQAAVL-KE  112 (255)
Q Consensus        41 ~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------vl~k~~~-~~  112 (255)
                      .-.+|+++.++|+++...- +..-+    +  .+.+ +...+.+...|+++++++.+.++.|+       ...+... .+
T Consensus       136 ~~~~gv~liliGi~l~s~A-g~~k~----~--~~~~-~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g  207 (345)
T PRK13499        136 MTLLGVLVALIGVAIVGRA-GQLKE----R--KMGI-KKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG  207 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhhcc----c--cccc-ccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Confidence            4677899999999988531 10000    0  0000 00123467799999999999999999       4433321 12


Q ss_pred             cCCcchHHHHHHH---HHHHHHH-HHHHHh--c-cCCC---cccccchhHHHHH----HHHHHHHHHHHHHHHHHHHhcc
Q 025279          113 YPDKINLVFFSCF---FGTIQCA-VVSIIV--E-RNPS---AWKLQPGIQRTAV----IYAAIVGTVIRSSIIAWCLQKK  178 (255)
Q Consensus       113 ~~~~~~~~~~~~~---~~~l~~~-~~~~~~--~-~~~~---~~~~~~~~~~~~l----l~lgi~~s~~~~~~~~~~l~~~  178 (255)
                      .+ +.....-++.   .|.++.. .+....  . ++..   ....+. ..+..-    +.-|+ .=.+++.+|.++-++.
T Consensus       208 ~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~  284 (345)
T PRK13499        208 VD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAK-PLLITNVLLSALAGV-MWYLQFFFYAMGHSKL  284 (345)
T ss_pred             CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence            23 2333333332   4444322 211111  1 1111   111110 011211    22233 3445677888888888


Q ss_pred             Cceehh----hhhchHHHHHHHHHHHHhCCCCc------hhhhhhHHHHHHhhhhhhcc
Q 025279          179 GPVFVA----LFKPLGTAIAVFMAVMFLGETPH------LGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       179 ~a~~~s----~~~~l~Pi~a~l~~~~~lgE~~~------~~~~lG~~lI~~gv~l~~~~  227 (255)
                      +.....    +.+.+..+++.+++++ +||.=+      ...++|.++++.|..++...
T Consensus       285 g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        285 GAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             CCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            665443    4447888999999995 999766      56789999999998886654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.15  E-value=0.0058  Score=52.72  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhh----hhHHHHHHhhhhhh
Q 025279          151 IQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVI  225 (255)
Q Consensus       151 ~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~----lG~~lI~~gv~l~~  225 (255)
                      ..+..-+..|++ =.+++...+++.++.+.+++-++. -++-+...++++++|||--+..++    ++.++++.|+++..
T Consensus        43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            345555666664 458999999999999999997776 677777899999999997776554    36677889999988


Q ss_pred             cccccccc
Q 025279          226 WAQGKESN  233 (255)
Q Consensus       226 ~~~~~~~~  233 (255)
                      ++++++++
T Consensus       122 ~~~~~~~~  129 (269)
T PF06800_consen  122 YQDKKSDK  129 (269)
T ss_pred             cccccccc
Confidence            77665543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.02  E-value=0.0069  Score=45.33  Aligned_cols=109  Identities=7%  Similarity=-0.043  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025279           94 VTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAW  173 (255)
Q Consensus        94 ~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~  173 (255)
                      +.+++|+.-+-+.||..+..++ ..-.. +..-.... +.              ..+..+     +.+.....+...|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-Ll--------------~n~~y~-----ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-LL--------------LNPKYI-----IPFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-HH--------------HhHHHH-----HHHHHHHHHHHHHHH
Confidence            4578899999999998877653 33321 32222211 10              011111     133345567778999


Q ss_pred             HHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279          174 CLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV  224 (255)
Q Consensus       174 ~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~  224 (255)
                      .+++.+-+.+.... .+.=+++++.++++.+|..+...++|+++++.|+.+.
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99999999998884 8999999999998877788889999999999998753

Many members are annotated as potential transmembrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.80  E-value=0.0024  Score=56.37  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             HHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025279          102 WKIFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG  179 (255)
Q Consensus       102 ~~vl~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~  179 (255)
                      .++..|+..+  ..+.|..++..++..+.+.....-..-.....  ...+...|..++-+|++ -.++..+-+.++++.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLV-FCISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHH-HHHHHHhcchhhhccc
Confidence            3457777777  66668888888777777666554432211111  11133457778888885 5599999999999999


Q ss_pred             ceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          180 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       180 a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .+..-..-.++|++.+++++++.+|+.+...+.-...++.|+.+....
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~  156 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT  156 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec
Confidence            999999999999999999999999999998887777777777766553

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.34  E-value=0.0013  Score=49.25  Aligned_cols=54  Identities=9%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             cceecceeeecccchhhhh-----hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279            4 ANICNYRYQIQLSDSCFCH-----GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-----~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      .++..|.++.++.+.....     ..+..++.++.+|||++++++.+++++++|++++.
T Consensus        47 ~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   47 VAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA  105 (113)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4455666677776542222     36677789999999999999999999999999996

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.27  E-value=0.0023  Score=54.00  Aligned_cols=134  Identities=8%  Similarity=0.050  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279           88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  167 (255)
Q Consensus        88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~  167 (255)
                      ..+.+++=++.|+..-....|...+   |..-+. .+.+|+++.....++.. ++    ..+...+..-+..|.+ =.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~l-GtT~GALifaiiv~~~~-~p----~~T~~~~iv~~isG~~-Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTL-GTTLGALIFAIIVFLFV-SP----ELTLTIFIVGFISGAF-WSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC---hhHhhh-hccHHHHHHHHHHheee-cC----ccchhhHHHHHHhhhH-hhhh
Confidence            4677888999999888776654332   333332 33445554444333221 11    1122233333444443 3378


Q ss_pred             HHHHHHHHhccCceehhhhh-chHHHHHHHHHHHHhCCCCchhhh-h---hHHHHHHhhhhhhcccccc
Q 025279          168 SSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSL-I---GTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       168 ~~~~~~~l~~~~a~~~s~~~-~l~Pi~a~l~~~~~lgE~~~~~~~-l---G~~lI~~gv~l~~~~~~~~  231 (255)
                      +...+++++..+.+++..+. -.+-+-+.+++++.|||=.+..++ +   ..++++.|+++..++++.+
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n  141 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN  141 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence            88999999999999997765 467788899999999998887765 3   4566788998887766533

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.0022  Score=55.99  Aligned_cols=126  Identities=16%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHH
Q 025279           82 YSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAI  161 (255)
Q Consensus        82 ~~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi  161 (255)
                      +.++..|..+.+.+.+.-+...++.||..+|...                  ...-.++....+.  .+    .+.+.|.
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~------------------~~~ra~~gg~~yl--~~----~~Ww~G~   71 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA------------------SGLRAGEGGYGYL--KE----PLWWAGM   71 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh------------------hcccccCCCcchh--hh----HHHHHHH
Confidence            4567899999999999999999998887666431                  0000011111111  11    1223477


Q ss_pred             HHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          162 VGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       162 ~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      +..+++-..-+-+....|++.++.+..+..++.++++.++++|++++.-.+|+.+.++|-.+.....+++
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            7778888888888888999999999999999999999999999999999999999998866655444443

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.04  Score=48.35  Aligned_cols=79  Identities=14%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhc-hHHHHHHHHHHHHhCCC--Cch----hhhhhHHHHHHhhhh
Q 025279          151 IQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGET--PHL----GSLIGTVVIAFGFYA  223 (255)
Q Consensus       151 ~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~-l~Pi~a~l~~~~~lgE~--~~~----~~~lG~~lI~~gv~l  223 (255)
                      ..|..++.+.. +........+++++..+++.++.+.| +-..++++-+.++++|=  .+.    ....|+..++.|+++
T Consensus       225 ~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl  303 (335)
T KOG2922|consen  225 LTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL  303 (335)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence            44665555555 66678888899999999998866655 45677788888889883  333    345788889999988


Q ss_pred             hhccccc
Q 025279          224 VIWAQGK  230 (255)
Q Consensus       224 ~~~~~~~  230 (255)
                      ....|.+
T Consensus       304 L~~~kd~  310 (335)
T KOG2922|consen  304 LHRTKDM  310 (335)
T ss_pred             eeeeccc
Confidence            7654443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.51  E-value=0.0091  Score=48.85  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          166 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       166 ~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      .+.+.|..++++++|+.++.+......|..+++|+.+|+++....++..++.+.|+.+..+..+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            456788999999999999999999999999999999999999999999999999998888765543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.39  E-value=0.87  Score=40.63  Aligned_cols=138  Identities=12%  Similarity=0.071  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC---cchHHHHHHHHHHHHHHHHHHHhc----c-C---CCcccccchhHHHHHH
Q 025279           89 GLLLTVTCFSSATWKIFQAAVLKEYPD---KINLVFFSCFFGTIQCAVVSIIVE----R-N---PSAWKLQPGIQRTAVI  157 (255)
Q Consensus        89 ~~l~l~aa~~~a~~~vl~k~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~----~-~---~~~~~~~~~~~~~~ll  157 (255)
                      .+.++...+-++......|...++..+   |.+.++..=++-.+++....+.-.    + .   ++.+....+.+...+.
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~   96 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS   96 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence            444555566667777766665443321   344444444445555544444332    1 1   1111111111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          158 YAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       158 ~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                       +=.+...+..-+++.++++.+|+.-.+...+-.+.++++..+++++++++.||....+.+.|+.++...
T Consensus        97 -vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen   97 -VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             -HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence             111234556668999999999999999999999999999999999999999999999999999998843

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.16  E-value=0.15  Score=45.24  Aligned_cols=140  Identities=13%  Similarity=0.114  Sum_probs=88.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHHHHH-HHhccCCCc-ccccchhHHHHHHHHH
Q 025279           84 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLV-FFSCFFGTIQCAVVS-IIVERNPSA-WKLQPGIQRTAVIYAA  160 (255)
Q Consensus        84 ~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~ll~lg  160 (255)
                      .-..|+++..+++++.+.+++=.||. |+++  .+.. ..+.+++.++.-.+. +..-++..+ +...+...+....+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            45789999999999999999998885 5554  3332 224455555443332 222222211 2222223455555556


Q ss_pred             HHHHHHHHHHHHHHHhccCceeh-hhhhchHHHHHHHHHHHHhCC-------CCchhhhhhHHHHHHhhhhhhcc
Q 025279          161 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGE-------TPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       161 i~~s~~~~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~~lgE-------~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      + -=+++-..|-.++|+.+.+.. ++..-+.-+++.++--++.|+       +-....++|..+.+.|+.+.-+.
T Consensus        81 ~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   81 V-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             H-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            6 345777888999999987744 666666677777775555443       22346789999999999998764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.08  E-value=0.025  Score=50.57  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcccccc
Q 025279          164 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       164 s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      =.++...++.+++++.++...++....-+|+..++.++-+|++++...++..+-++|+++++..+.+.
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            44688899999999999999999999999999999999999999999999999999999999876554

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.04  E-value=0.052  Score=46.54  Aligned_cols=132  Identities=10%  Similarity=0.031  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279           88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  167 (255)
Q Consensus        88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~  167 (255)
                      |.+..++|+++++...+=.||.... + ++....+++....+........ .+.+..+    +...+    -|. -=..+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g-D-g~~fQw~~~~~i~~~g~~v~~~-~~~p~f~----p~aml----gG~-lW~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG-D-GFFFQWVMCSGIFLVGLVVNLI-LGFPPFY----PWAML----GGA-LWATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC-C-cHHHHHHHHHHHHHHHHHHHHh-cCCCcce----eHHHh----hhh-hhhcC
Confidence            4567888999999999988876443 3 4555444443333333333332 2222111    11111    111 11123


Q ss_pred             HHHHHHHHhccCceeh-hhhhchHHHHHHHHHHH-HhCCCC-----chhhhhhHHHHHHhhhhhhcccccc
Q 025279          168 SSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM-FLGETP-----HLGSLIGTVVIAFGFYAVIWAQGKE  231 (255)
Q Consensus       168 ~~~~~~~l~~~~a~~~-s~~~~l~Pi~a~l~~~~-~lgE~~-----~~~~~lG~~lI~~gv~l~~~~~~~~  231 (255)
                      ..+-.-.+|.++-... .+....+-+.+-..+-+ +||++.     +++.++|.+++++|..+...-|.++
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            3333344444444332 23333455555555533 455533     4578899999999888776544433

The region concerned is approximately 280 residues long.

>PRK02237 hypothetical protein; Provisional

Probab=94.21  E-value=0.32  Score=35.85  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             ceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          180 PVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       180 a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ..++ +.+.-...+.+.+++|.+-|++|+...++|..+.+.|+.++.+.+
T Consensus        58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3444 667777788899999999999999999999999999998876644

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.62  E-value=0.27  Score=42.99  Aligned_cols=125  Identities=10%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025279          103 KIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP  180 (255)
Q Consensus       103 ~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a  180 (255)
                      +.+.+...++++-|+.++..+...=.+.....-...+...+.  ....+...+-.+.-.++ ++++=-.+-+|++++++.
T Consensus        32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtl  110 (349)
T KOG1443|consen   32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTL  110 (349)
T ss_pred             HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeee
Confidence            456666666676678887777665544443332222221111  11111112222333444 677778899999999999


Q ss_pred             eehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          181 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       181 ~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      +.-.......++|..+++.+|-=|+++|....=..+|..|+++..++.
T Consensus       111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks  158 (349)
T KOG1443|consen  111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS  158 (349)
T ss_pred             eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence            999999999999999999999999999999999999999999887644

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=93.58  E-value=0.027  Score=41.82  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             eecceeeecccchhhhh------hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279            6 ICNYRYQIQLSDSCFCH------GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus         6 ~~~~~~~~~~~~~~~~~------~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      +.++.+++++.++....      ..+....+.+.+|||+++++++|+++.+.|++++.
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   68 YLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            33444555554443333      25566688899999999999999999999998873

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=93.44  E-value=1.6  Score=37.45  Aligned_cols=103  Identities=9%  Similarity=-0.014  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 025279           88 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  167 (255)
Q Consensus        88 G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~~s~~~  167 (255)
                      -+.+.+.++++--...-+.|..-.... +.-.+.++..+++++++.+.=...   ..+   +..+|..++..|+ +.+..
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr---~r~---~~~~~~~~~~yGv-sLg~M   84 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALFRPWR---RRL---SKPQRLALLAYGV-SLGGM   84 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHH---hcc---ChhhhHHHHHHHH-HHHHH
Confidence            578888899988888888888888887 688899999999988876552111   111   2346888888888 78889


Q ss_pred             HHHHHHHHhccCceehhhhhchHHHHHHHHH
Q 025279          168 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMA  198 (255)
Q Consensus       168 ~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~  198 (255)
                      +.+++.+++++|-..+-.+.++.|+.-.+++
T Consensus        85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            9999999999999999999999998766543

>COG2510 Predicted membrane protein [Function unknown]

Probab=93.19  E-value=0.016  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      ++..++..++++||++..+++|+++..+|++++.
T Consensus       105 vl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510         105 VLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            3444567777888888889999999999999874

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=93.09  E-value=0.029  Score=41.92  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=30.2

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      .+......+.++||++++|++|+.+.++|++++.
T Consensus        75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5566788899999999999999999999999874

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=3  Score=36.80  Aligned_cols=123  Identities=17%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcchHHH--HHHHHHHHHHHHHHHHhccCCCcccccchhHHH--HHHHHHHHHHHHHHHHH
Q 025279           96 CFSSATWKIFQAAVLKEYPDKINLVF--FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRT--AVIYAAIVGTVIRSSII  171 (255)
Q Consensus        96 a~~~a~~~vl~k~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~lgi~~s~~~~~~~  171 (255)
                      +++--+-++..|.+..+++-|..+..  .|.+...+.+...-...--+.+.........|.  .+++.+-+-++      
T Consensus        21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~------   94 (314)
T KOG1444|consen   21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTG------   94 (314)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHc------
Confidence            33344445666776666655555554  888887777665543211112212121222232  34444443333      


Q ss_pred             HHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhh
Q 025279          172 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV  224 (255)
Q Consensus       172 ~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~  224 (255)
                      .+++|+.+.....++..+.|+...+....++|-+++...+.....+.+|....
T Consensus        95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen   95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            36789999999999999999999999999999999999999999888776554

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=91.23  E-value=0.16  Score=44.29  Aligned_cols=130  Identities=9%  Similarity=0.063  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccC--------CC---cccccchhHHHHHHHHH
Q 025279           92 LTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN--------PS---AWKLQPGIQRTAVIYAA  160 (255)
Q Consensus        92 ~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~---~~~~~~~~~~~~ll~lg  160 (255)
                      |+++.+||+.+-..+|...++... ...+.|-+.++.+....+..+.-++        +.   +.....+..+...+.-|
T Consensus         1 M~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG   79 (336)
T PF07168_consen    1 MVITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG   79 (336)
T ss_pred             CeeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence            356889999999999888776542 2335566655555544333222111        11   11111112233333444


Q ss_pred             HHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCc--hhhhhhHHHHHHhhhhh
Q 025279          161 IVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPH--LGSLIGTVVIAFGFYAV  224 (255)
Q Consensus       161 i~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~--~~~~lG~~lI~~gv~l~  224 (255)
                      ++ --++..+..+++...+-+.+-++ ..+..+.++.+-|+ ++.+.+  ...+.|..++++++++-
T Consensus        80 vv-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg  144 (336)
T PF07168_consen   80 VV-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG  144 (336)
T ss_pred             Hh-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence            43 33677777777777765544222 33444557777775 566665  35567888877777664

Transport is dependent on glucose and a proton gradient [].

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=91.02  E-value=0.25  Score=36.20  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             HHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          194 AVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       194 a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      -+.+++++++|+++|.+..|..+++++++.+.
T Consensus        76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            35677889999999999999999999987653

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.90  E-value=1.3  Score=32.53  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             Cceeh-hhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          179 GPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       179 ~a~~~-s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      ...++ +.+.-.-.+.+.++++.+-|++|+...++|..+.+.|+.++.+.+
T Consensus        55 ~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   55 AFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             cchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            33344 666677778899999999999999999999999999999887654

; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.46  E-value=0.76  Score=38.91  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hcC--C--------cchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHH
Q 025279           92 LTVTCFSSATWKIFQAAVLK-EYP--D--------KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAA  160 (255)
Q Consensus        92 ~l~aa~~~a~~~vl~k~~~~-~~~--~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg  160 (255)
                      +..--+||=.|-+.+.|..+ ++.  .        ....++.++....+..=++..+...  ...+. .+ .+.. . ..
T Consensus        18 a~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--~~~D~-t~-~~~Y-a-Ac   91 (337)
T KOG1580|consen   18 AGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--TEIDN-TP-TKMY-A-AC   91 (337)
T ss_pred             ecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--ccccC-Cc-chHH-H-HH
Confidence            33445688888888888754 232  1        1233344444444433222222111  11111 11 1221 1 22


Q ss_pred             HHHHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccccc
Q 025279          161 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  230 (255)
Q Consensus       161 i~~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~~~  230 (255)
                      ..+..++...-+.++|..+=-+.-+--..-|+=.+++|+.+.+.+.+|..+.-..+|+.|+.+..++++|
T Consensus        92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            2356678888899999998666667788899999999999999999999999999999999998876554

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.43  E-value=0.049  Score=46.15  Aligned_cols=133  Identities=17%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 025279           83 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV  162 (255)
Q Consensus        83 ~~~~~G~~l~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgi~  162 (255)
                      ++.-.|....+.+.+.|-.|-++.+...-+--+.+.-....+..+++++...    ..+.     ..+...+.-+.-|+ 
T Consensus       148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~----~~~~-----~~~K~t~~nii~G~-  217 (288)
T COG4975         148 SNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFF----KMEK-----RFNKYTWLNIIPGL-  217 (288)
T ss_pred             HhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhc----cccc-----chHHHHHHHHhhHH-
Confidence            4466899999999999999999987653221111222233334444333221    1111     11222222233444 


Q ss_pred             HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhh----hhhHHHHHHhhhhhh
Q 025279          163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVI  225 (255)
Q Consensus       163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~----~lG~~lI~~gv~l~~  225 (255)
                      .=+.+...+..+.++.+.++.=.+..+..+.+.+=++++++|+=|..+    ++|.++++.|..+..
T Consensus       218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg  284 (288)
T COG4975         218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence            344788889999999998888888889999999999999999988755    467888887776644

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.32  E-value=0.41  Score=41.34  Aligned_cols=112  Identities=18%  Similarity=0.309  Sum_probs=79.7

Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHhccCCCcccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHhccCceehhhhhc
Q 025279          113 YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQP----GIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  188 (255)
Q Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~lgi~~s~~~~~~~~~~l~~~~a~~~s~~~~  188 (255)
                      .+.|...+.++++....++..+......-+..+..+.    ......++=+.+ .-..+-..-++.+++.+.+.--+-..
T Consensus        58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRs  136 (347)
T KOG1442|consen   58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRS  136 (347)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eeeeehhccceehhhcceEEEEeccc
Confidence            3447899999999998888887765433221111111    011112222222 22244556788999999999889999


Q ss_pred             hHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhh
Q 025279          189 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  225 (255)
Q Consensus       189 l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~  225 (255)
                      +..+|.+++.+++++++-+.....+|.+|+.|..+-.
T Consensus       137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv  173 (347)
T KOG1442|consen  137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV  173 (347)
T ss_pred             hhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence            9999999999999999999999999999999987743

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.17  E-value=0.85  Score=32.99  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhc
Q 025279          193 IAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  226 (255)
Q Consensus       193 ~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~  226 (255)
                      +-+.++++.++|++.|.++.|..+++.|++++.+
T Consensus        82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            3456889999999999999999999999988653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=86.26  E-value=32  Score=32.85  Aligned_cols=39  Identities=8%  Similarity=-0.088  Sum_probs=19.4

Q ss_pred             hhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhh
Q 025279          185 LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  223 (255)
Q Consensus       185 ~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l  223 (255)
                      ......|+-+.++|.+.-.-.++....++++.++.+..+
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            344456777788887643333333333444433333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=86.19  E-value=0.19  Score=38.08  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      +.....+.+.++|++++.+++|+.+.++|++.+-
T Consensus        69 v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         69 LFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            4456678889999999999999999999998873

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=85.34  E-value=0.23  Score=36.70  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV   56 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li   56 (255)
                      +...+.+.+.++|+.+..|++|+.+.++|++.+
T Consensus        69 v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          69 VGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            445667899999999999999999999999987

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.78  E-value=2  Score=37.36  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhccCceehhhhhchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          163 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       163 ~s~~~~~~~~~~l~~~~a~~~s~~~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      +-..+-.+++.++..+.++.-....--..+|..+++.-+++.+++..+|+|...+.+|+.++...
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            44455566777777777877777788889999999999999999999999999999999887654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=83.63  E-value=0.31  Score=36.34  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      +.....+++.++|++++.+++|+.+.++|++.+-
T Consensus        69 v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3445678899999999999999999999999983

>PRK11431 multidrug efflux system protein; Provisional

Probab=82.76  E-value=0.42  Score=35.34  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV   56 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li   56 (255)
                      +.....+.+.++|++++.+++|+.+.+.|++.+
T Consensus        68 v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         68 VGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            445567889999999999999999999999987

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=81.88  E-value=0.47  Score=35.33  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIV   56 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li   56 (255)
                      +.....+.+.++|++++.|++|+.+.+.|++.+
T Consensus        74 v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         74 AATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344557888999999999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.36
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.91
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	90.78
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	88.98

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.36  E-value=9.6e-13  Score=101.21  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhccc
Q 025279          159 AAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  228 (255)
Q Consensus       159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~~  228 (255)
                      +++++++++|.+|++++|+.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5778899999999999999999999888 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.91  E-value=4.8e-09  Score=77.57  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceehhhh-hchHHHHHHHHHHHHhCCCCchhhhhhHHHHHHhhhhhhcc
Q 025279          159 AAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  227 (255)
Q Consensus       159 lgi~~s~~~~~~~~~~l~~~~a~~~s~~-~~l~Pi~a~l~~~~~lgE~~~~~~~lG~~lI~~gv~l~~~~  227 (255)
                      .++++.+++|.++.+++|+.|.+++..+ ..+.|+++++++++++||++++.+++|..+|+.|+++.+..
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            5667888999999999999999999777 89999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=90.78  E-value=0.047  Score=39.58  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             HHHHhhhhhhhhcccCccchhhhHhhhhhhhhhh
Q 025279           24 QLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVS   57 (255)
Q Consensus        24 a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~   57 (255)
                      ....+.+.+.++|++++.+++|+.+.++|++++.
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4556788899999999999999999999999984

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=88.98  E-value=0.071  Score=40.30  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             hHHHHhhhhhhhhcccCccchhhhHhhhhhhhhhhh
Q 025279           23 GQLDTGMEKVAIRSRSSQAKILGTVVSIAGAFIVSL   58 (255)
Q Consensus        23 ~a~~~~~e~~~~~e~~~~~~~~g~~l~~~Gv~li~~   58 (255)
                      ..+..+.+.+.++|++++.+++|+++.++|++++..
T Consensus        68 pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            355567888899999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00