Citrus Sinensis ID: 025314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEccccHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccccccHHHHHHHHHcccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccccccccHcccccEcHHHHHHHccEEEEcccccccccccHHHcccccccccEEEEEcccccHHHHHHHHHccHHccccEEEccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHccccccccccEEEEEEEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHccEEEEcccccc
Coil and Loop (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAgdnlvskcptwswesgepskrksylpadkqflITRNVPCLRRAASVEeeyegaggeilvdnedndgwlathgkpkakcdededdnlpsmeAVEISKNNNVRAIStyfggeeeeeedipdmaeynepdsiienetdpatlpstylvahepdddnilrtrtydisitydkyyqtprvwltgydeSRMLLKTELILEDVSQDHARKTVRGVLYVHL
Flexible Loop (DISEMBL)
melqqkfygifkgtvekitshrtvsafkekgVLSVSEFVLAGdnlvskcptwswesgepskrksylpadkqflitrnVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMeaveisknnnvRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLvahepdddnilrtrtydisitydkyyqtprvWLTGYDESRMLLKTELIledvsqdharktvrgvlyvhl
Low Complexity Region (SEG)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGeeeeeeDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL
Disordered region (IsUnstruct)
*****KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWE*********YLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNE**DGWL*************************************************************************TYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYV**
Disordered Region (DISOPRED)
*******YGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHG*******************************************DIPDMAEYNEPDSIIENETDPATLPS*************LRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL
Disordered Region (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTW***********SYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFG********IPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL
Disordered Region (DISPRO)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDN*DNDGWLAT*********************************************************************PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLY***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q0WWQ1	313	Autophagy-related protein	yes	no	0.976	0.792	0.759	1e-109
Q550A8	338	Autophagy-related protein	yes	no	0.976	0.733	0.417	4e-45
Q6PFS7	317	Ubiquitin-like-conjugatin	yes	no	0.874	0.700	0.431	6e-40
Q5I0S6	312	Ubiquitin-like-conjugatin	yes	no	0.881	0.717	0.405	2e-39
Q6GQE7	313	Ubiquitin-like-conjugatin	N/A	no	0.937	0.760	0.399	4e-39
Q9CPX6	314	Ubiquitin-like-conjugatin	yes	no	0.842	0.681	0.434	4e-39
Q0VCL3	314	Ubiquitin-like-conjugatin	yes	no	0.834	0.675	0.447	4e-38
Q9NT62	314	Ubiquitin-like-conjugatin	yes	no	0.822	0.665	0.429	6e-38
Q6AZ50	314	Ubiquitin-like-conjugatin	yes	no	0.830	0.671	0.432	1e-36
P0CM34	385	Autophagy-related protein	yes	no	0.893	0.589	0.366	3e-32

>sp|Q0WWQ1|ATG3_ARATH Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=1 SV=2

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 222/254 (87%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8. This step is required for the membrane association of ATG8. The formation of the ATG8-phosphatidylethanolamine conjugate is essential for autophagy and for the cytoplasm to vacuole transport (Cvt).
Arabidopsis thaliana (taxid: 3702)

>sp|Q550A8|ATG3_DICDI Autophagy-related protein 3 OS=Dictyostelium discoideum GN=atg3 PE=3 SV=3

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 153/278 (55%), Gaps = 30/278 (10%)

Query: 3   LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKR 62
            QQ  +  +  TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+ 
Sbjct: 5   FQQAVHKAYVKTVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRN 64

Query: 63  KSYLPADKQFLITRNVPCLRRAASVEEEYEGAGG-EILVDNEDNDGWLATHGKPKAKCDE 121
            SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A   +P    D+
Sbjct: 65  VSYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVA--PQPVGNQDD 122

Query: 122 DEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYN----------EPDSII 171
            ED+ +  + +++I         +T          +  D  E            + D+II
Sbjct: 123 IEDEKV-DISSLKIDDKKPNTTTTTTAKPTNNNNNNNDDEDEDEDGDIPDLDDFQDDNII 181

Query: 172 ENETDPATLPSTYLVAHEP---------------DDDNILRTRTYDISITYDKYYQTPRV 216
           E E DPA L                         D+DNILRTRTYDISITYDKYYQTPRV
Sbjct: 182 EEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRV 240

Query: 217 WLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL 254
           WL GYDE+R  LK E I ED+S+DHA KTV    + HL
Sbjct: 241 WLFGYDENRKPLKPEEIFEDISEDHAHKTVTIDSHPHL 278

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of atg8. This step is required for the membrane association of atg8. The formation of the atg8-phosphatidylethanolamine conjugate is essential for autophagy.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6PFS7|ATG3_DANRE Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/255 (43%), Positives = 141/255 (55%), Gaps = 33/255 (12%)

Query: 9   GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
           G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct: 10  GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query: 69  DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDE----- 121
           DKQFL+TRNVPC +R   +E   E    E +++ +D D GW+ T H        E     
Sbjct: 70  DKQFLLTRNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query: 122 --DEDDNLPSMEAVEISKNNNVR--AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDP 177
             D  DN+          N NV+  A       +++EE +  DM EY E   +   ETD 
Sbjct: 127 SLDNKDNM----------NMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDD 173

Query: 178 ATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE 231
           ATL ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  +
Sbjct: 174 ATLDTSKMADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEDRQPLTVD 233

Query: 232 LILEDVSQDHARKTV 246
            + ED+SQDH +KTV
Sbjct: 234 QMYEDISQDHVKKTV 248

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5I0S6|ATG3_XENTR Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRA 143
             +  EY      I+ +++ + GW+ T H       +  ++  L + +  + + N  V  
Sbjct: 86  KQM--EYSDEQEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQDCGKTTSNIAVDD 143

Query: 144 ISTYFGGEEEEEEDIPDMAEYNEPDSIIE-NETDPATLPSTYLVAHEPDDDNILRTRTYD 202
                 GE  + ED  +    +  D+ ++ ++   A  P   L      +D IL+TRTYD
Sbjct: 144 DDDDDEGEAADMEDYEESGLLDNDDATVDTSKIKEACKPKADLGG----EDAILQTRTYD 199

Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL 254
           + ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV    + HL
Sbjct: 200 LYITYDKYYQTPRLWLFGYDEQRRPLTVENMYEDISQDHVKKTVTIENHPHL 251

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GQE7|ATG3_XENLA Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 146/263 (55%), Gaps = 25/263 (9%)

Query: 5   QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct: 2   QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT--HGKPKA 117
           K K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D D GW+ T  H     
Sbjct: 62  KIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDE---QEAIIEEDDGDGGWVDTFHHTGLSG 118

Query: 118 KCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDP 177
             +  ++  L + +  + + N  V        GE        DM +Y E   ++EN  D 
Sbjct: 119 VTEAVKEITLETQDCGKTTDNIAVCDDDDDDEGE------AADMEDYEE-SGLLEN--DD 169

Query: 178 ATLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE 231
           AT+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E
Sbjct: 170 ATVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRRPLAVE 229

Query: 232 LILEDVSQDHARKTVRGVLYVHL 254
            + ED+SQDH +KTV    + HL
Sbjct: 230 NMYEDISQDHVKKTVTIENHPHL 252

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CPX6|ATG3_MOUSE Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 14/228 (6%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAI 144
             +  EY      I+ +++ + GW+ T+         +    + ++E+ +  K  +  A+
Sbjct: 86  KQM--EYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKDSIKLQDCSAL 142

Query: 145 STYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRT 198
                 +EE+E +  DM EY E   +   ETD ATL +  +V      A    +D IL+T
Sbjct: 143 CD--EEDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKADAGGEDAILQT 197

Query: 199 RTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
           RTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct: 198 RTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VCL3|ATG3_BOVIN Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 18/230 (7%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
             +E   E    E +++ +D D GW+ T H    A   E   +   ++E+ +  K  +  
Sbjct: 86  KQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGIAGITEAVKEI--TLESKDSIKLQDCS 140

Query: 143 AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNIL 196
           A+      EEE+E +  DM EY E   +   ETD ATL +  +V           +D IL
Sbjct: 141 ALCE--EEEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAIL 195

Query: 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
           +TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct: 196 QTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NT62|ATG3_HUMAN Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3 PE=1 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 135/233 (57%), Gaps = 24/233 (10%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
             +E   E    E +++ +D D GW+ T H        E       +++ + +   +N+R
Sbjct: 86  KQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITE-------AVKEITLENKDNIR 135

Query: 143 ---AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDD 193
                +     E+E+E +  DM EY E   +   ETD ATL +  +V           +D
Sbjct: 136 LQDCSALCEEEEDEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGED 192

Query: 194 NILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
            IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct: 193 AILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6AZ50|ATG3_RAT Ubiquitin-like-conjugating enzyme ATG3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/231 (43%), Positives = 136/231 (58%), Gaps = 20/231 (8%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDND-GWLATHGKP--KAKCDEDEDDNLPSMEAVEISKNNNV 141
             +E   E    E +++ +D D GW+ T+         +  ++  L S +++++   + +
Sbjct: 86  KQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQDCSVL 142

Query: 142 RAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNI 195
                     EEEE +  DM EY E   +   ETD ATL +  +V      A    +D I
Sbjct: 143 CDEEE-----EEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAKADAGGEDAI 194

Query: 196 LRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
           L+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct: 195 LQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0CM34|ATG3_CRYNJ Autophagy-related protein 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG3 PE=3 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE G ++  EFV AGD L  K P W WE GE S+ + +LP DKQ+L+TRNVPCLRRA
Sbjct: 26  SKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGESSRARDFLPPDKQYLVTRNVPCLRRA 85

Query: 85  ASVEEEYEGAGGEILVDNED--------NDGWLATH---GKPKAKCDEDEDDNLPSMEAV 133
            +V+        E L+   D        +D W+ATH     P    D DE  ++P  ++ 
Sbjct: 86  TAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVATHINRSPPHRPTDMDEIPDIP--DSP 143

Query: 134 EISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDD- 192
             +    +  ++   GG+ EE+E        +  +  +E+  D A +   +    E +  
Sbjct: 144 TTAPTREMAGLNVSSGGKLEEDEIPDIDDIPDMDEEGLEDLEDDAAVRIVHPSEAEVNST 203

Query: 193 --DNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVL 250
              N+L+ RTYD  I+YDK+YQTPR WL GYDE +  L    + +DV  DHA KT+    
Sbjct: 204 AGKNLLQVRTYDCIISYDKHYQTPRFWLFGYDEHKNPLTPAQVFQDVPADHAFKTMTMES 263

Query: 251 YVH 253
           + H
Sbjct: 264 FPH 266

Putative E2-like conjugating enzyme involved in autophagy and for the cytoplasm to vacuole transport (Cvt).

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
297797109	313	autophagy 3 [Arabidopsis lyrata subsp. l	0.976	0.792	0.767	1e-109
18424474	313	autophagy-related protein 3 [Arabidopsis	0.976	0.792	0.759	1e-108
9758466	334	autophagocytosis protein AUT1-like [Arab	0.976	0.742	0.759	1e-107
110740691	313	autophagocytosis protein - like [Arabido	0.976	0.792	0.755	1e-107
21595613	313	autophagocytosis protein-like [Arabidops	0.976	0.792	0.755	1e-107
224071495	315	predicted protein [Populus trichocarpa]	0.976	0.787	0.765	1e-105
224138464	315	predicted protein [Populus trichocarpa]	0.980	0.790	0.784	1e-103
255539835	314	conserved hypothetical protein [Ricinus	0.980	0.792	0.767	1e-102
38260612	312	autophagocytosis protein [Sisymbrium iri	0.960	0.782	0.732	1e-102
217072932	310	unknown [Medicago truncatula] gi|3885188	0.964	0.790	0.748	4e-99

>gi|297797109|ref|XP_002866439.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata] gi|297312274|gb|EFH42698.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/254 (76%), Positives = 224/254 (88%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 121 EDE--NLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424474|ref|NP_568934.1| autophagy-related protein 3 [Arabidopsis thaliana] gi|147742948|sp|Q0WWQ1.2|ATG3_ARATH RecName: Full=Autophagy-related protein 3; AltName: Full=Autophagy-related E2-like conjugation enzyme ATG3; Short=AtAPG3; Short=Protein autophagy 3 gi|19912141|dbj|BAB88382.1| autophagy 3 [Arabidopsis thaliana] gi|89000923|gb|ABD59051.1| At5g61500 [Arabidopsis thaliana] gi|332010093|gb|AED97476.1| autophagy-related protein 3 [Arabidopsis thaliana]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 222/254 (87%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758466|dbj|BAB08995.1| autophagocytosis protein AUT1-like [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 222/254 (87%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740691|dbj|BAE98447.1| autophagocytosis protein - like [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/254 (75%), Positives = 222/254 (87%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYD+YYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDEYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595613|gb|AAM66117.1| autophagocytosis protein-like [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/254 (75%), Positives = 221/254 (87%), Gaps = 6/254 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVS FVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSXFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 235 HARKTVTIEDHPHL 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071495|ref|XP_002303487.1| predicted protein [Populus trichocarpa] gi|222840919|gb|EEE78466.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/256 (76%), Positives = 222/256 (86%), Gaps = 8/256 (3%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLPA+KQFLITRNVPCLRRAASVEE+YE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKPYLPAEKQFLITRNVPCLRRAASVEEDYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA++IS K   ++   +YFGG   EEEDIPDMA++ +PD++I  E+DPAT
Sbjct: 120 GDEDENVPSMEALDISVKRIPIQTNPSYFGG---EEEDIPDMADFEDPDNLI--ESDPAT 174

Query: 180 LPSTYLVAHEP-DDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVS 238
           L +TYLVAHEP DDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVS
Sbjct: 175 LQTTYLVAHEPDDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLEPELVLEDVS 234

Query: 239 QDHARKTVRGVLYVHL 254
           QDHARKTV    + HL
Sbjct: 235 QDHARKTVTIEDHPHL 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138464|ref|XP_002326609.1| predicted protein [Populus trichocarpa] gi|222833931|gb|EEE72408.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/255 (78%), Positives = 225/255 (88%), Gaps = 6/255 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLPA+KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKSYLPAEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA+EIS K + ++   +YFGG  EEEEDIPDMA++ +PD++I  E+DPAT
Sbjct: 120 GDEDENVPSMEALEISAKKSLIQTNHSYFGG--EEEEDIPDMADFEDPDNLI--ESDPAT 175

Query: 180 LPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQ 239
           L +TYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQ
Sbjct: 176 LQTTYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQ 235

Query: 240 DHARKTVRGVLYVHL 254
           DHARKTV    + HL
Sbjct: 236 DHARKTVTIEDHPHL 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539835|ref|XP_002510982.1| conserved hypothetical protein [Ricinus communis] gi|223550097|gb|EEF51584.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/254 (76%), Positives = 222/254 (87%), Gaps = 5/254 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLV+KCPTWSWESGEPS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVAKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KR SYLP +KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK    
Sbjct: 61  KRMSYLPPEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPKESTG 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            DED+N+PS+EA+EISK + + +I +YFGG  +EEEDIPDM +Y +P+++I  E+DPATL
Sbjct: 121 -DEDENVPSLEALEISKKSPIHSIPSYFGG--KEEEDIPDMDDYEDPNNLI--ESDPATL 175

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYL+AHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQD
Sbjct: 176 QSTYLIAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQD 235

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 236 HARKTVTIEDHPHL 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260612|gb|AAR15430.1| autophagocytosis protein [Sisymbrium irio]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/254 (73%), Positives = 214/254 (84%), Gaps = 10/254 (3%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +G FKG VE++T  RTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKIHGAFKGAVERMTGPRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHG+PK + +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGRPKDRGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A+EI++ + ++    Y GG  EEE+DIPDMAE++E D+      DPATL
Sbjct: 121 EDE--NLPSMDALEINERDTIQPKPKYAGG--EEEDDIPDMAEFDEIDN------DPATL 170

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            S  LVAH+ DDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 171 QSNLLVAHQQDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 230

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 231 HARKTVTIEDHPHL 244

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072932|gb|ACJ84826.1| unknown [Medicago truncatula] gi|388518803|gb|AFK47463.1| unknown [Medicago truncatula]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 190/254 (74%), Positives = 221/254 (87%), Gaps = 9/254 (3%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT HRTVSAFKEKGVLSVSEF++AGDNLV+KCPTWSWESGEPS
Sbjct: 1   MVLSQKLHEAFKGTVERITGHRTVSAFKEKGVLSVSEFIIAGDNLVAKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLP++KQFLITRNVPCLRRAAS+EEEYE AGGE+L+D+E+NDGWLATHGKPK +  
Sbjct: 61  KRKSYLPSEKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDDEENDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            DE++NLPSME++EIS+ ++V+  S++ GG  E++EDIPDM E+ E D+IIE +      
Sbjct: 120 SDEEENLPSMESLEISEKSSVKQTSSHTGG--EDDEDIPDMEEFKEYDNIIETD------ 171

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
           PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQD
Sbjct: 172 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQD 231

Query: 241 HARKTVRGVLYVHL 254
           HARKTV    + HL
Sbjct: 232 HARKTVTIEDHPHL 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2151566	313	ATG3 "AT5G61500" [Arabidopsis	0.976	0.792	0.751	1.7e-100
DICTYBASE|DDB_G0277319	338	atg3 "autophagy protein 3" [Di	0.669	0.502	0.403	1.6e-53
UNIPROTKB|E1C502	313	ATG3 "Autophagy-related protei	0.897	0.728	0.429	1.1e-41
ZFIN|ZDB-GENE-030131-8576	317	apg3l "APG3 autophagy 3-like"	0.905	0.725	0.421	1.1e-41
FB|FBgn0036813	330	Aut1 "Aut1" [Drosophila melano	0.968	0.745	0.409	4.6e-41
MGI|MGI:1915091	314	Atg3 "autophagy related 3" [Mu	0.905	0.732	0.414	9.6e-41
UNIPROTKB|Q6GQE7	313	atg3 "Ubiquitin-like-conjugati	0.940	0.763	0.396	2.6e-40
UNIPROTKB|Q0VCL3	314	ATG3 "Ubiquitin-like-conjugati	0.897	0.726	0.419	3.3e-40
UNIPROTKB|F1SLS7	314	ATG3 "Autophagy-related protei	0.897	0.726	0.419	5.3e-40
UNIPROTKB|F1PJ26	312	ATG3 "Autophagy-related protei	0.905	0.737	0.410	6.8e-40

TAIR|locus:2151566 ATG3 "AT5G61500" [Arabidopsis thaliana (taxid:3702)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 191/254 (75%), Positives = 218/254 (85%)

Query:     1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct:     1 MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
             KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct:    61 KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDK-- 118

Query:   121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATL 180
               E+DNLPSM+A++I++ N +++I TYFGG      DIPDM E++E D+++EN  DPATL
Sbjct:   119 GKEEDNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query:   181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
              STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct:   175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query:   241 HARKTVRGVLYVHL 254
             HARKTV    + HL
Sbjct:   235 HARKTVTIEDHPHL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0277319 atg3 "autophagy protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 309 (113.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 77/191 (40%), Positives = 106/191 (55%)

Query:     4 QQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRK 63
             QQ  +  +  TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+  
Sbjct:     6 QQAVHKAYVKTVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRNV 65

Query:    64 SYLPADKQFLITRNVPCLRRAASVEEEYEGA-GGEILVDNEDNDGWLATHGKPKAKCD-- 120
             SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A   +P    D  
Sbjct:    66 SYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVAP--QPVGNQDDI 123

Query:   121 EDE---------DDNLPSMEAVEISK--NNNVRAISTYFGGXXXXXXDIPDMAEYNEPDS 169
             EDE         DD  P+      +K  NNN    +           DIPD+ ++ + D+
Sbjct:   124 EDEKVDISSLKIDDKKPNTTTTTTAKPTNNNN---NNNDDEDEDEDGDIPDLDDFQD-DN 179

Query:   170 IIENETDPATL 180
             IIE E DPA L
Sbjct:   180 IIEEE-DPAVL 189

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1C502 ATG3 "Autophagy-related protein 3" [Gallus gallus (taxid:9031)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 106/247 (42%), Positives = 140/247 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWASGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H        E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHNAGIVGATEAVKEITLDSKDN 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPD- 191
             ++I +    R+ S           +  DM EY E   +   ETD ATL +  +V  +   
Sbjct:   134 IKIPE----RSASCE-DDDDEDEGEAADMEEYEESGLL---ETDDATLDTRQIVEVKAKV 185

Query:   192 ----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVR 247
                 +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV 
Sbjct:   186 DVGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVT 245

Query:   248 GVLYVHL 254
                + HL
Sbjct:   246 IENHPHL 252

GO:0015031 "protein transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

ZFIN|ZDB-GENE-030131-8576 apg3l "APG3 autophagy 3-like" [Danio rerio (taxid:7955)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 104/247 (42%), Positives = 136/247 (55%)

Query:     9 GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
             G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct:    10 GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query:    69 DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDD 125
             DKQFL+TRNVPC +R   +E   E    E +++ +D DG W+ T H        E   + 
Sbjct:    70 DKQFLLTRNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query:   126 NLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL 185
             +L + +   ++ N    A             +  DM EY E   +   ETD ATL ++ +
Sbjct:   127 SLDNKD--NMNMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDDATLDTSKM 181

Query:   186 V------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQ 239
                    A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  + + ED+SQ
Sbjct:   182 ADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEDRQPLTVDQMYEDISQ 241

Query:   240 DHARKTV 246
             DH +KTV
Sbjct:   242 DHVKKTV 248

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

FB|FBgn0036813 Aut1 "Aut1" [Drosophila melanogaster (taxid:7227)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 111/271 (40%), Positives = 138/271 (50%)

Query:     5 QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             Q      KGT   +  + T     S F+E GVL+  EFV AGD+LV  CPTW W +G+ +
Sbjct:     2 QSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDET 61

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKC 119
             K K YLP DKQFLITRNVPC RR   +E  Y   G E LV+ E  DG W+ TH       
Sbjct:    62 KTKPYLPKDKQFLITRNVPCYRRCKQME--Y--VGEETLVEEESGDGGWVETHQLNDDGT 117

Query:   120 DEDEDD--NLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIP--DMAEYNEP------DS 169
              + ED    L   E  E     +    +   GG      D    DM ++ E       D 
Sbjct:   118 TQLEDKICELTMEETKEEMHTPDSDKSAPGAGGQAEDEDDDEAIDMDDFEESGMLELVDP 177

Query:   170 IIENET---DPATLPSTYLVAH---EPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              +   T   +P    S    A    E   D++L TRTYD+ I+YDKYYQTPR+W+ GYDE
Sbjct:   178 AVATTTRKPEPEAKASPVAAASGDAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDE 237

Query:   224 SRMLLKTELILEDVSQDHARKTVRGVLYVHL 254
              R  L  E + EDVSQDHA+KTV    + HL
Sbjct:   238 QRKPLTVEQMYEDVSQDHAKKTVTMESHPHL 268

GO:0006914 "autophagy" evidence=IMP

MGI|MGI:1915091 Atg3 "autophagy related 3" [Mus musculus (taxid:10090)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 102/246 (41%), Positives = 138/246 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKD 132

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AH 188
               K  +  A+            +  DM EY E   +   ETD ATL +  +V      A 
Sbjct:   133 SIKLQDCSALCDE--EDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKAD 187

Query:   189 EPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRG 248
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV  
Sbjct:   188 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTI 247

Query:   249 VLYVHL 254
               + HL
Sbjct:   248 ENHPHL 253

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IMP

GO:0019777 "Atg12 ligase activity" evidence=IDA

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IMP

UNIPROTKB|Q6GQE7 atg3 "Ubiquitin-like-conjugating enzyme ATG3" [Xenopus laevis (taxid:8355)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 104/262 (39%), Positives = 146/262 (55%)

Query:     5 QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct:     2 QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAK 118
             K K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D DG W+ T H    + 
Sbjct:    62 KIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHHTGLSG 118

Query:   119 CDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPA 178
               E   +   ++E  +  K  +  A+            +  DM +Y E   ++EN  D A
Sbjct:   119 VTEAVKEI--TLETQDCGKTTDNIAVCD---DDDDDEGEAADMEDYEE-SGLLEN--DDA 170

Query:   179 TLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTEL 232
             T+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E 
Sbjct:   171 TVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRRPLAVEN 230

Query:   233 ILEDVSQDHARKTVRGVLYVHL 254
             + ED+SQDH +KTV    + HL
Sbjct:   231 MYEDISQDHVKKTVTIENHPHL 252

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

UNIPROTKB|Q0VCL3 ATG3 "Ubiquitin-like-conjugating enzyme ATG3" [Bos taurus (taxid:9913)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 104/248 (41%), Positives = 142/248 (57%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S ++
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDS 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

Query:   247 RGVLYVHL 254
                 + HL
Sbjct:   246 TIENHPHL 253

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0019899 "enzyme binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SLS7 ATG3 "Autophagy-related protein 3" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 104/248 (41%), Positives = 140/248 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDG 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

Query:   247 RGVLYVHL 254
                 + HL
Sbjct:   246 TIENHPHL 253

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1PJ26 ATG3 "Autophagy-related protein 3" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 101/246 (41%), Positives = 138/246 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    15 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 74

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    75 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNAGVTGITEAVKEI-TLESKD 130

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---EPD 191
               K  +  A+            +  DM EY E   +   ETD ATL +  +V     + D
Sbjct:   131 SIKLQDCSAVCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTD 185

Query:   192 ---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRG 248
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV  
Sbjct:   186 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTI 245

Query:   249 VLYVHL 254
               + HL
Sbjct:   246 ENHPHL 251

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WWQ1	ATG3_ARATH	No assigned EC number	0.7598	0.9763	0.7923	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__2125__AT5G61500.1	annotation not avaliable (313 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_800258.1	annotation not avaliable (697 aa)				•	•	•	•		0.942
	fgenesh1_pm.C_scaffold_1003508	annotation not avaliable (96 aa)					•		•		0.566
	fgenesh1_pm.C_scaffold_3001200	annotation not avaliable (94 aa)					•		•		0.549

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam03986	146	pfam03986, Autophagy_N, Autophagocytosis associate	3e-48
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	2e-15

>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3), N-terminal domain

 Score =  155 bits (395), Expect = 3e-48
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 10/155 (6%)

Query: 6   KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSY 65
             +       E +T     S F+E GV++  EFV AGD LV K PTWSW +G+PSK + Y
Sbjct: 1   SLHSALSSVREYLTPVLKTSKFRETGVITPEEFVAAGDYLVHKFPTWSWAAGDPSKIRPY 60

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKP-KAKCDEDED 124
           LP DKQFL+TRNVPC RRA  +E        EI+ D +++DGW+ THG   K K D  ++
Sbjct: 61  LPPDKQFLVTRNVPCYRRAKQMEYGDGAE--EIVEDEDEDDGWVTTHGNRDKQKDDIADE 118

Query: 125 DNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIP 159
           +++P +   +    ++  A       +E++++DIP
Sbjct: 119 EDIPEIGDDDDDVVDSSDA-------DEDDDDDIP 146

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme. It catalyzes the conjugation of Atg8 and phosphatidylethanolamine. Length = 146

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 204 SITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
            ITYDK YQ PR++L GYDE    L  E + ED+  D+  KTV
Sbjct: 1   YITYDKSYQVPRLYLRGYDEDGKPLSPEEMFEDIVPDYRDKTV 43

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG2981	295	consensus Protein involved in autophagocytosis dur	100.0
PF03986	145	Autophagy_N: Autophagocytosis associated protein (	100.0
PF03987	62	Autophagy_act_C: Autophagocytosis associated prote	99.73

>KOG2981 consensus Protein involved in autophagocytosis during starvation [General function prediction only]

Probab=100.00  E-value=1.3e-99  Score=679.41  Aligned_cols=234  Identities=46%  Similarity=0.721  Sum_probs=192.7

Q ss_pred             ChhHHHHHHHHhhhhhhcccCCCCCccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCCc
Q 025314            1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPC   80 (254)
Q Consensus         1 ~~~~~~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC   80 (254)
                      +||-++|+|+|++||||||||+++|+|++||||||||||+||||||||||||||++|+++|+|+|||+||||||||||||
T Consensus         1 q~~~n~l~sa~l~~~E~lTpv~k~S~F~etGvitpeEFV~AGD~Lvh~cPTW~W~~gd~~k~r~fLPkdKQfLItRnVpC   80 (295)
T KOG2981|consen    1 QNLANTLKSAALNWREYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWSWAEGDESKIRPFLPKDKQFLITRNVPC   80 (295)
T ss_pred             CcHHHHHHHHHHhHHHhcccccchhhhhhcCccCHHHHHhccchhhhcCCccccccCCcccccccCCCCceEEEeccChH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhccCCcccccCCCCCceeecCCCCCCCCCCCccCCCCCchhhhhccccccccccCCCCCCCCCcCCccC
Q 025314           81 LRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPD  160 (254)
Q Consensus        81 ~~R~~~~~~e~~~~~~~~~~~~~~ddgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D  160 (254)
                      +|||+||  +|..+.+.++. .++++|||+||......         ..+............+.+   +..+++++|++|
T Consensus        81 ~kR~~q~--~~~ee~e~iv~-~Edg~gwvdT~~~ed~l---------e~~~~e~ih~~~t~~~~~---e~~~edddE~~d  145 (295)
T KOG2981|consen   81 YKRCKQM--EYVEELEVIVD-EEDGGGWVDTHNEEDTL---------EYIGKETIHSQDTPAAAP---ESSDEDDDELID  145 (295)
T ss_pred             HHHHhhh--hcccccceEEe-ccCCCccccccchhhcc---------cccchhhcccCCCCcCCc---cccccccccccc
Confidence            9999999  67777666664 45558999999632211         111111111000001111   246678899999


Q ss_pred             ccccCCCCCCccCCCCCCCCCCcccccCCCCCCCccceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhHhhhhccc
Q 025314          161 MAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD  240 (254)
Q Consensus       161 m~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~emfEDIs~D  240 (254)
                      |++++++|++    +|+++++. .++....++.+|+++||||||||||||||||||||+||||+|+|||++|||||||+|
T Consensus       146 ~~e~~e~d~~----edp~~~~s-~~~~~~~dd~gil~tRtYDL~I~YdkyYqtPRl~l~Gyde~r~pLt~E~myEDvS~D  220 (295)
T KOG2981|consen  146 MEELEESDEE----EDPATFVS-KAVAGLADDSGILQTRTYDLYITYDKYYQTPRLWLVGYDENRQPLTVEQMYEDVSQD  220 (295)
T ss_pred             cccccccccc----cCHHHHhh-hhccccccccccceeeEEEEEEEeeccccCceEEEEEecCCCCcCCHHHHHHHhhhh
Confidence            9999998864    45666654 222333456679999999999999999999999999999999999999999999999


Q ss_pred             ccCCceecccCCCC
Q 025314          241 HARKTVRGVLYVHL  254 (254)
Q Consensus       241 ya~KTVTiE~hPhl  254 (254)
                      ||+||||||+||||
T Consensus       221 ha~KTvTiE~hPh~  234 (295)
T KOG2981|consen  221 HAKKTVTIEKHPHL  234 (295)
T ss_pred             hccCeEEeccCCCC
Confidence            99999999999997

>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=100.00  E-value=7.6e-59  Score=390.26  Aligned_cols=108  Identities=52%  Similarity=0.924  Sum_probs=43.9

Q ss_pred             HHHHHhhhhhhcccCCCCCccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCCchhhhhh
Q 025314            7 FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAAS   86 (254)
Q Consensus         7 ~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~   86 (254)
                      |+|+|++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++|+|+|||++|||||||||||++||++
T Consensus         2 l~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~AGD~LV~k~PTW~W~~g~~~k~k~yLP~dKQfLvtRnVPC~~R~~~   81 (145)
T PF03986_consen    2 LRSTFSSVREYLTPVLHESKFKETGVITPEEFVAAGDYLVHKFPTWQWSAGDPSKRKDYLPKDKQFLVTRNVPCYRRAKD   81 (145)
T ss_dssp             --------------------HHHHS---HHHHHHHHHHHHHH-TT-EE---TTB---TTS-TT-S-EEEEEEEE-S-TTT
T ss_pred             hHHHHHHHHHHhcCCCCcccccccceeCHHHHHHhhhHHHhhCCcceeccCCccccCCCCCCCCeEEEecCcccHHhhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCcccccCCCCCceeecCCCCC
Q 025314           87 VEEEYEGAGGEILVDNEDNDGWLATHGKPK  116 (254)
Q Consensus        87 ~~~e~~~~~~~~~~~~~~ddgWv~t~~~~~  116 (254)
                      +  ++....+.+++++++++|||.||+...
T Consensus        82 ~--~~~~~~e~~~~~~~~ddgWv~t~~~~~  109 (145)
T PF03986_consen   82 M--EYSEEDEEIVEDDDDDDGWVDTHHNQT  109 (145)
T ss_dssp             ------------------------------
T ss_pred             c--cccccccceeccCCCCCCeEccCCccc
Confidence            9  455566667777778999999998653

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.

>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=99.73  E-value=9.4e-19  Score=127.29  Aligned_cols=51  Identities=37%  Similarity=0.507  Sum_probs=44.0

Q ss_pred             EEEeeCCCCCceeEEeeecCCCCCCChhhHhhhhcccccCCceecccCCCC
Q 025314          204 SITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL  254 (254)
Q Consensus       204 ~ITYDkyYqTPRlwL~GYde~~~PLt~~emfEDIs~Dya~KTVTiE~hPhl  254 (254)
                      +|+||++||||+|||.||+++|.||+.++|++|++.+++++|||++.||+|
T Consensus         1 ~I~Ys~~YqvP~L~f~~~~~~g~~l~~~~~~~~~~~~~~~~~it~~~HP~l   51 (62)
T PF03987_consen    1 HITYSPSYQVPVLYFRGYDEDGSPLSLEEVYEDLSPDSADSTITQEEHPIL   51 (62)
T ss_dssp             EEEEETTTTEEEEEEEEEETT--B--HHHHHTTS-TTTHHHHEEEEE-TTB
T ss_pred             CEEecCccCCCEEEEEEECCCCCCCCHHHHHHhhccccccceeecccCCCC
Confidence            799999999999999999999999999999999999999999999999986

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3vx8_B	292	Crystal Structure Of Arabidopsis Thaliana Atg7ntd-A		1e-99
2dyt_A	312	The Crystal Structure Of Saccharomyces Cerevisiae A		2e-14
4gsl_C	312	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		1e-13

>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3 Complex Length = 292

Iteration: 1
 Score =  359 bits (921), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 176/229 (76%), Positives = 200/229 (87%), Gaps = 6/229 (2%)
Query: 26  AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAA 85
           AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ SKRK YLP+DKQFLITRNVPCLRRAA
Sbjct: 5   AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAA 64
Query: 86  SVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAIS 145
           SV E+YE AGGE+LVD+EDNDGWLATHGKPK K    E+DNLPSM+A++I++ N +++I 
Sbjct: 65  SVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG--KEEDNLPSMDALDINEKNTIQSIP 122
Query: 146 TYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISI 205
           TYFGG      DIPDM E++E D+++EN  DPATL STYLVAHEPDDDNILRTRTYD+SI
Sbjct: 123 TYFGG--EEDDDIPDMEEFDEADNVVEN--DPATLQSTYLVAHEPDDDNILRTRTYDLSI 178
Query: 206 TYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL 254
           TYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQDHARKTV    + HL
Sbjct: 179 TYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHL 227

>pdb|2DYT|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg3 Length = 312

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 31/223 (13%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VPC +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPCDK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQCVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKT 245
           + I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT
Sbjct: 173 LYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKT 215

>pdb|4GSL|C Chain C, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 312

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 31/223 (13%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VP  +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLAHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPADK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQAVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKT 245
           + I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT
Sbjct: 173 LYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKT 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	4e-62
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score =  196 bits (499), Expect = 4e-62
 Identities = 53/241 (21%), Positives = 90/241 (37%), Gaps = 29/241 (12%)

Query: 7   FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSW-ESGEPSKRKSY 65
                    E +T     S F   G ++  EFV AGD L    PTW W E       + +
Sbjct: 4   IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDF 63

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDD 125
           LP +KQFLI R VPC +RA    E             + ++  +  +   + +  +    
Sbjct: 64  LPKNKQFLIIRKVPCDKRAEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPA 123

Query: 126 NLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185
                 +++                E +EE++  D  E+N                    
Sbjct: 124 GGTKDSSIDDIDELIQ-------DMEIKEEDENDDTEEFNA------------------- 157

Query: 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKT 245
                   ++ + R YD+ I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT
Sbjct: 158 --KGGLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKT 215

Query: 246 V 246
            
Sbjct: 216 A 216

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 40/260 (15%), Positives = 68/260 (26%), Gaps = 90/260 (34%)

Query: 10  IFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDN-----LVSKCPTWSWESGEPS-KRK 63
           I         + R       K    V +FV          L+S       E  +PS   +
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTR 110

Query: 64  SY------LPADKQFLITRNVP------CLRRAASV--EEEY---EGAGGEILVDNEDND 106
            Y      L  D Q     NV        LR+A       +    +G  G          
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------- 161

Query: 107 G--WLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEY 164
           G  W+A        C   +         V+   +  +  ++               +   
Sbjct: 162 GKTWVA-----LDVCLSYK---------VQCKMDFKIFWLN---------------LKNC 192

Query: 165 NEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDES 224
           N P++++E                      +L     + +   D          +   E 
Sbjct: 193 NSPETVLEMLQ------------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 225 RMLLKTE------LILEDVS 238
           R LLK++      L+L +V 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQ 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3vx8_B	292	Autophagy-related protein 3; E1-E2 complex, ligase	100.0
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	100.0
4ebr_A	169	Ubiquitin-like-conjugating enzyme ATG10; autophagy	99.36
3vx7_B	152	E2; ubiquitin conjugation; 3.20A {Kluyveromyces ma	96.97
2lpu_A	152	Kmatg10; autophagy, E2-like, proteolysis, protein	93.98

>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-87  Score=613.76  Aligned_cols=223  Identities=78%  Similarity=1.245  Sum_probs=114.9

Q ss_pred             ccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCCchhhhhhhhhhhhccCCcccccCCCC
Q 025314           26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN  105 (254)
Q Consensus        26 ~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~~~~e~~~~~~~~~~~~~~d  105 (254)
                      +|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||++|.++|....++++++++++
T Consensus         5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d   84 (292)
T 3vx8_B            5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN   84 (292)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred             ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999777877777777667778


Q ss_pred             CceeecCCCCCCCCCCCccCCCCCchhhhhccccccccccCCCCCCCCCcCCccCccccCCCCCCccCCCCCCCCCCccc
Q 025314          106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL  185 (254)
Q Consensus       106 dgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~  185 (254)
                      +|||.||+.....  ....+.+++|+...........+..+.  ..++++++|+||++++++++++  ++|++++.+++.
T Consensus        85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~  158 (292)
T 3vx8_B           85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTY--FGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL  158 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceeecCCccccc--ccccccccccccccccccccccccccc--cccccccccCchhhhhcccccc--ccchhhhccccc
Confidence            8999999753221  123456777765532211111111111  2346788999999998877654  566666544333


Q ss_pred             ccCCCCCCCccceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhHhhhhcccccCCceecccCCCC
Q 025314          186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL  254 (254)
Q Consensus       186 ~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~emfEDIs~Dya~KTVTiE~hPhl  254 (254)
                      ...++++++|+++||||||||||+|||||||||+||+++|+||+++||||||+++|++||||||.||||
T Consensus       159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~~ktVT~e~HP~l  227 (292)
T 3vx8_B          159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHL  227 (292)
T ss_dssp             ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC----CEEEEECSSS
T ss_pred             cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhhcceEEeecCCcc
Confidence            223334678999999999999999999999999999999999999999999999999999999999997

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-81  Score=580.37  Aligned_cols=211  Identities=25%  Similarity=0.457  Sum_probs=121.3

Q ss_pred             HHHHHHhhhhhhcccCCCCCccccccccCHHHHHHhcccccccCCceecCCC-CCCCCCCCCCCCCeeEEecCCCchhhh
Q 025314            6 KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRRA   84 (254)
Q Consensus         6 ~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g-~~~k~r~yLP~dKQfLvTRnVPC~~R~   84 (254)
                      .|+|+|++||||||||+|+|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+|||
T Consensus         3 ~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R~   82 (312)
T 2dyt_A            3 MIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRA   82 (312)
T ss_dssp             --------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSCT
T ss_pred             hHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHHh
Confidence            5899999999999999999999999999999999999999999999999865 788999999999999999999999999


Q ss_pred             hhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhccccccccccCCCCCCCCCc
Q 025314           85 ASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEE  155 (254)
Q Consensus        85 ~~~~~e~~~~~~~~~~-------~~~~ddgWv~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (254)
                      ++|   +....+++++       ++++++|||.||  +...........+.|++|+                   +.+++
T Consensus        83 ~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~-------------------~~~d~  140 (312)
T 2dyt_A           83 EQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDID-------------------ELIQD  140 (312)
T ss_dssp             TTC------------------------------------------------CHHHH-------------------HHHHH
T ss_pred             hhc---cccchhhhhhccccccccccCCCceeeccccccccCcccccccccccccc-------------------ccccc
Confidence            998   3444444443       345678999998  2111000000011111110                   00112


Q ss_pred             CCccCccccCCCCCCccCCCCCCCCCCcccccCCCCCCCccceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhHhh
Q 025314          156 EDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILE  235 (254)
Q Consensus       156 ~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~emfE  235 (254)
                      ++|+|.+      +    ++|++++....     ..+++|.++|+||+|||||+|||||||||+||+++|+||+++||||
T Consensus       141 ~~~~d~~------~----~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~e  205 (312)
T 2dyt_A          141 MEIKEED------E----NDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFE  205 (312)
T ss_dssp             HHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHT
T ss_pred             ccccccc------c----cCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHH
Confidence            2222211      0    22322221111     1355789999999999999999999999999999999999999999


Q ss_pred             hhcccccCCceecccCCC
Q 025314          236 DVSQDHARKTVRGVLYVH  253 (254)
Q Consensus       236 DIs~Dya~KTVTiE~hPh  253 (254)
                      ||+++|+.||||+|.|||
T Consensus       206 di~~d~~~ktVT~e~HP~  223 (312)
T 2dyt_A          206 DISADYRTKTATIEKLPF  223 (312)
T ss_dssp             TSCTTTHHHHEEEEECTT
T ss_pred             HHHHhhccCceecccCCC
Confidence            999999999999999999

>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.1e-13  Score=117.62  Aligned_cols=58  Identities=14%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             ceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChh------hHhhhhcccccCCceeccc-CCCC
Q 025314          197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE------LILEDVSQDHARKTVRGVL-YVHL  254 (254)
Q Consensus       197 ~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~------emfEDIs~Dya~KTVTiE~-hPhl  254 (254)
                      +.++||++||||++||||||||+||+++|.||.+.      ++++++++.++.+|||++. ||++
T Consensus        61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~Hp~~  125 (169)
T 4ebr_A           61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLE  125 (169)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEECCHHHHHHHHTTTTCCCCSSEEEEEET
T ss_pred             cceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhhcchHHHHHHhccccceEEEeccCCCCC
Confidence            56899999999999999999999999999887775      7899999999999999886 6654

>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A

Probab=96.97  E-value=0.00035  Score=58.69  Aligned_cols=54  Identities=13%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             eeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhH-----h-----hhhcccccCCceecccCCCC
Q 025314          198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELI-----L-----EDVSQDHARKTVRGVLYVHL  254 (254)
Q Consensus       198 ~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~em-----f-----EDIs~Dya~KTVTiE~hPhl  254 (254)
                      .-.||+.|+||.+||+|.||+..|..+  .|.-.++     |     .++.+-= .-||++..||+|
T Consensus        48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l  111 (152)
T 3vx7_B           48 DTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEM  111 (152)
T ss_dssp             TEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTS
T ss_pred             ceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeecccc
Confidence            478999999999999999999999876  2322222     2     2322221 478889899975

>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}

Probab=93.98  E-value=0.0042  Score=52.00  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             eEEEEEEEeeCCCCCceeEEeeecCCC
Q 025314          199 RTYDISITYDKYYQTPRVWLTGYDESR  225 (254)
Q Consensus       199 RtYDL~ITYDkyYqTPRlwL~GYde~~  225 (254)
                      =++|+.|+|++.||+|.||+.=|+.++
T Consensus        49 ~~iE~~I~Y~~~YqVP~L~fRlwe~~~   75 (152)
T 2lpu_A           49 TLLELHIYYDHVYHVPSIKFRLWSLDT   75 (152)
Confidence            478999999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00