Citrus Sinensis ID: 025316
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| 15217806 | 259 | Nucleotide-diphospho-sugar transferases | 0.980 | 0.961 | 0.827 | 1e-123 | |
| 297840831 | 260 | hypothetical protein ARALYDRAFT_475501 [ | 0.980 | 0.957 | 0.819 | 1e-122 | |
| 224117146 | 253 | predicted protein [Populus trichocarpa] | 0.968 | 0.972 | 0.853 | 1e-121 | |
| 449461229 | 252 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.948 | 0.849 | 1e-121 | |
| 224144884 | 234 | predicted protein [Populus trichocarpa] | 0.917 | 0.995 | 0.879 | 1e-119 | |
| 357498109 | 263 | hypothetical protein MTR_6g046960 [Medic | 0.913 | 0.882 | 0.853 | 1e-119 | |
| 225454680 | 254 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.929 | 0.847 | 1e-119 | |
| 255558119 | 257 | conserved hypothetical protein [Ricinus | 0.980 | 0.968 | 0.847 | 1e-119 | |
| 357481009 | 279 | hypothetical protein MTR_5g007050 [Medic | 0.913 | 0.831 | 0.853 | 1e-119 | |
| 225454682 | 268 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.880 | 0.847 | 1e-119 |
| >gi|15217806|ref|NP_176678.1| Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana] gi|5042435|gb|AAD38274.1|AC006193_30 Unknown protein [Arabidopsis thaliana] gi|34146814|gb|AAQ62415.1| At1g64980 [Arabidopsis thaliana] gi|51970684|dbj|BAD44034.1| hypothetical protein [Arabidopsis thaliana] gi|332196190|gb|AEE34311.1| Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/249 (82%), Positives = 222/249 (89%)
Query: 5 VREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGL 64
V+ T N + + KPF+IFVGYDPREDLAY+VCH SI KRSSIPV+ITPI+QSDLRK GL
Sbjct: 8 VKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGL 67
Query: 65 YWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVH 124
YWRERGQ ESTEFSFSRFLTP+L+ + GWA+FVDCDFLYLADIKEL DLIDDKYAIMCV
Sbjct: 68 YWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKYAIMCVQ 127
Query: 125 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLE 184
HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNK L+PE+VNTQTGAFLHRFQWLE
Sbjct: 128 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLHRFQWLE 187
Query: 185 DEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEMEEY 244
DEEIGSIPFVWNFLEGHN VVE DPTT PKA+HYTRGGPWF+AWK CEFADLWL EMEEY
Sbjct: 188 DEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWLNEMEEY 247
Query: 245 KNEANKTVE 253
E K +
Sbjct: 248 NKENKKEAD 256
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840831|ref|XP_002888297.1| hypothetical protein ARALYDRAFT_475501 [Arabidopsis lyrata subsp. lyrata] gi|297334138|gb|EFH64556.1| hypothetical protein ARALYDRAFT_475501 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224117146|ref|XP_002317490.1| predicted protein [Populus trichocarpa] gi|222860555|gb|EEE98102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449461229|ref|XP_004148344.1| PREDICTED: uncharacterized protein LOC101206166 [Cucumis sativus] gi|449531569|ref|XP_004172758.1| PREDICTED: uncharacterized protein LOC101224062 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224144884|ref|XP_002325449.1| predicted protein [Populus trichocarpa] gi|222862324|gb|EEE99830.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357498109|ref|XP_003619343.1| hypothetical protein MTR_6g046960 [Medicago truncatula] gi|355494358|gb|AES75561.1| hypothetical protein MTR_6g046960 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225454680|ref|XP_002269835.1| PREDICTED: uncharacterized protein LOC100264930 isoform 1 [Vitis vinifera] gi|359489862|ref|XP_003633988.1| PREDICTED: uncharacterized protein LOC100264930 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255558119|ref|XP_002520088.1| conserved hypothetical protein [Ricinus communis] gi|223540852|gb|EEF42412.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357481009|ref|XP_003610790.1| hypothetical protein MTR_5g007050 [Medicago truncatula] gi|355512125|gb|AES93748.1| hypothetical protein MTR_5g007050 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225454682|ref|XP_002269871.1| PREDICTED: uncharacterized protein LOC100264930 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| TAIR|locus:2010776 | 259 | CDI "cadmium 2+ induced" [Arab | 0.980 | 0.961 | 0.827 | 5.4e-118 | |
| UNIPROTKB|Q608H8 | 232 | MCA1513 "Putative uncharacteri | 0.842 | 0.922 | 0.495 | 5.5e-54 |
| TAIR|locus:2010776 CDI "cadmium 2+ induced" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 206/249 (82%), Positives = 222/249 (89%)
Query: 5 VREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGL 64
V+ T N + + KPF+IFVGYDPREDLAY+VCH SI KRSSIPV+ITPI+QSDLRK GL
Sbjct: 8 VKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGL 67
Query: 65 YWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVH 124
YWRERGQ ESTEFSFSRFLTP+L+ + GWA+FVDCDFLYLADIKEL DLIDDKYAIMCV
Sbjct: 68 YWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKYAIMCVQ 127
Query: 125 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLE 184
HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNK L+PE+VNTQTGAFLHRFQWLE
Sbjct: 128 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLHRFQWLE 187
Query: 185 DEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEMEEY 244
DEEIGSIPFVWNFLEGHN VVE DPTT PKA+HYTRGGPWF+AWK CEFADLWL EMEEY
Sbjct: 188 DEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWLNEMEEY 247
Query: 245 KNEANKTVE 253
E K +
Sbjct: 248 NKENKKEAD 256
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| UNIPROTKB|Q608H8 MCA1513 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT1G64980 | unknown protein; unknown protein; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; Has 662 Blast hits to 662 proteins in 38 species- Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 564 (source- NCBI BLink). (259 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
 | KDO1 | • | 0.575 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| PRK15171 | 334 | lipopolysaccharide 1,3-galactosyltransferase; Prov | 100.0 | |
| cd06429 | 257 | GT8_like_1 GT8_like_1 represents a subfamily of GT | 100.0 | |
| cd06431 | 280 | GT8_LARGE_C LARGE catalytic domain has closest hom | 100.0 | |
| COG1442 | 325 | RfaJ Lipopolysaccharide biosynthesis proteins, LPS | 100.0 | |
| cd00505 | 246 | Glyco_transf_8 Members of glycosyltransferase fami | 100.0 | |
| PLN02523 | 559 | galacturonosyltransferase | 100.0 | |
| PLN02718 | 603 | Probable galacturonosyltransferase | 100.0 | |
| PLN02769 | 629 | Probable galacturonosyltransferase | 100.0 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 100.0 | |
| PLN02659 | 534 | Probable galacturonosyltransferase | 100.0 | |
| PLN02867 | 535 | Probable galacturonosyltransferase | 100.0 | |
| PLN02829 | 639 | Probable galacturonosyltransferase | 100.0 | |
| PLN02870 | 533 | Probable galacturonosyltransferase | 100.0 | |
| PLN02742 | 534 | Probable galacturonosyltransferase | 99.97 | |
| PLN02910 | 657 | polygalacturonate 4-alpha-galacturonosyltransferas | 99.97 | |
| PF01501 | 250 | Glyco_transf_8: Glycosyl transferase family 8; Int | 99.97 | |
| cd06432 | 248 | GT8_HUGT1_C_like The C-terminal domain of HUGT1-li | 99.96 | |
| cd06430 | 304 | GT8_like_2 GT8_like_2 represents a subfamily of GT | 99.96 | |
| cd02537 | 240 | GT8_Glycogenin Glycogenin belongs the GT 8 family | 99.94 | |
| PLN00176 | 333 | galactinol synthase | 99.93 | |
| cd06914 | 278 | GT8_GNT1 GNT1 is a fungal enzyme that belongs to t | 99.8 | |
| KOG1879 | 1470 | consensus UDP-glucose:glycoprotein glucosyltransfe | 98.5 | |
| COG5597 | 368 | Alpha-N-acetylglucosamine transferase [Cell envelo | 97.47 | |
| PF11051 | 271 | Mannosyl_trans3: Mannosyltransferase putative; Int | 95.62 | |
| PF03407 | 212 | Nucleotid_trans: Nucleotide-diphospho-sugar transf | 90.2 | |
| KOG1928 | 409 | consensus Alpha-1,4-N-acetylglucosaminyltransferas | 82.92 |
| >PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=1.7e-43 Score=325.71 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=159.1
Q ss_pred CceeEEEEEecCCchhhhHHHHHHHhHhCC-CCeEEEEeeccccc-----------c---cCceeec---------cCCC
Q 025316 17 NKPFKIFVGYDPREDLAYRVCHRSILKRSS-IPVKITPIVQSDLR-----------K---SGLYWRE---------RGQT 72 (254)
Q Consensus 17 ~~~i~I~~g~D~~~~~~~~v~i~SI~~~~~-~~v~i~~i~~~~l~-----------~---~~~~~~~---------~~~~ 72 (254)
+++++|++|+|.+|+.+++|+|.||++|++ .+++||+++.. ++ . ..+.... ....
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~-is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDY-ISDADKQRFSALAKQYNTRINIYLINCERLKSLPSTK 101 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCcccC
Confidence 478999999999999999999999999874 46899999732 11 0 0011110 0123
Q ss_pred CCCcceeehhehhhhcC-CCCeEEEEeCCEEEecChHHHHccCCCCceeEEEeccCCc---cccccccCCccCCCCCcce
Q 025316 73 ESTEFSFSRFLTPYLAG-FDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTP---KETTKMDGAVQTVYPRKNW 148 (254)
Q Consensus 73 ~~t~~ty~R~~ip~l~~-~~~k~LYLD~DiIv~~dl~eL~~~dl~~~~vaaV~d~~~~---~~~~~~~g~~~~~Y~~fN~ 148 (254)
..+.+||+||+||+++| ..+||||||||+||+|||+|||++|+++..+|||.++..+ ......++.......|||
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFN- 180 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFN- 180 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCcccccccee-
Confidence 45789999999999997 5899999999999999999999999985566666433211 111112222111113499
Q ss_pred eeEEEEeCCccccccccHHHHHhccccc-ccccccccC--------CcccccCCCcccccCCCccc---C-CCCCCCCeE
Q 025316 149 SSMVLYNCGHPKNKILTPEVVNTQTGAF-LHRFQWLED--------EEIGSIPFVWNFLEGHNMVV---E-NDPTTFPKA 215 (254)
Q Consensus 149 sGVmLiNl~~~~~~~l~~~~~~~~~~~~-~~~f~~~~~--------~~i~~L~~~wN~~~~~~~~~---~-~~~~~~p~I 215 (254)
|||||||+++||.+++++++++...... ...+.+.|| +++..||++||++.+..... . .....+|+|
T Consensus 181 sGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~I 260 (334)
T PRK15171 181 SGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAGKVKFIDAKYNTQFSLNYELKDSVINPVNDETVF 260 (334)
T ss_pred cceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcCCeEECCHhhCCccchhHHHHhcccccccCCCEE
Confidence 9999999999887788888776443221 112333444 46789999999987653211 0 112458999
Q ss_pred EEeCC-CCCCcCCCCCCccHHhHHHHHHH
Q 025316 216 IHYTR-GGPWFEAWKHCEFADLWLKEMEE 243 (254)
Q Consensus 216 IHyt~-~KPW~~~~~~~p~~~~w~~y~~~ 243 (254)
|||+| .|||+. |+.||+++.||+|+++
T Consensus 261 IHy~G~~KPW~~-~~~~~~~~~f~~~~~~ 288 (334)
T PRK15171 261 IHYIGPTKPWHS-WADYPVSQYFLKAKEA 288 (334)
T ss_pred EEECCCCCCCCC-CCCCchHHHHHHHHhc
Confidence 99999 999995 7799999999999886
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| >cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
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| >cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis | Back alignment and domain information |
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| >COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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| >cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
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| >PLN02523 galacturonosyltransferase | Back alignment and domain information |
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| >PLN02718 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02769 Probable galacturonosyltransferase | Back alignment and domain information |
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| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
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| >PLN02659 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02867 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02829 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02870 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02742 Probable galacturonosyltransferase | Back alignment and domain information |
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| >PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase | Back alignment and domain information |
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| >PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
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| >cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family | Back alignment and domain information |
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| >cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
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| >cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen | Back alignment and domain information |
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| >PLN00176 galactinol synthase | Back alignment and domain information |
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| >cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family | Back alignment and domain information |
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| >KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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| >COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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| >PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose | Back alignment and domain information |
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| >PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] | Back alignment and domain information |
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| >KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| 3tzt_A | 276 | Glycosyl transferase family 8; structural genomics | 100.0 | |
| 1g9r_A | 311 | Glycosyl transferase; alpha-beta structure; HET: U | 100.0 | |
| 1ll2_A | 333 | Glycogenin-1; protein-substrate complex, beta-alph | 99.94 | |
| 3u2u_A | 263 | Glycogenin-1, GN-1, GN1; structural genomics, stru | 99.92 |
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 | Back alignment and structure |
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Probab=100.00 E-value=2e-40 Score=296.49 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=151.9
Q ss_pred CceeEEEEEecCCchhhhHHHHHHHhHhCC-CCeEEEEeeccc-------ccc----cC--ceeecc---------CCCC
Q 025316 17 NKPFKIFVGYDPREDLAYRVCHRSILKRSS-IPVKITPIVQSD-------LRK----SG--LYWRER---------GQTE 73 (254)
Q Consensus 17 ~~~i~I~~g~D~~~~~~~~v~i~SI~~~~~-~~v~i~~i~~~~-------l~~----~~--~~~~~~---------~~~~ 73 (254)
.++|||++++|.+|+.+++|++.||++|++ .++.|+++...- ++. .+ +..... ...+
T Consensus 3 ~m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (276)
T 3tzt_A 3 AMADALLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDR 82 (276)
T ss_dssp --CEEEEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred ceeEEEEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccccc
Confidence 367999999999999999999999999997 589999996421 110 01 100000 0113
Q ss_pred CCcceeehhehhhhcC-CCCeEEEEeCCEEEecChHHHHccCCCCceeEEEeccCCcc--ccccccCC-ccCCCCCccee
Q 025316 74 STEFSFSRFLTPYLAG-FDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPK--ETTKMDGA-VQTVYPRKNWS 149 (254)
Q Consensus 74 ~t~~ty~R~~ip~l~~-~~~k~LYLD~DiIv~~dl~eL~~~dl~~~~vaaV~d~~~~~--~~~~~~g~-~~~~Y~~fN~s 149 (254)
.+..+|+||++|+++| ..+|+||||||+||++||+|||++|++++.+|||+|..... ...+..+. ... .||| |
T Consensus 83 ~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~--~yfN-s 159 (276)
T 3tzt_A 83 YPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDT--DYYN-S 159 (276)
T ss_dssp -CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC----------------------CEE-E
T ss_pred cCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCC--CeEE-e
Confidence 4568999999999998 57999999999999999999999999999999998632111 11111121 112 4499 9
Q ss_pred eEEEEeCCccccccccHHHHHhccccccccccccc--------CCcccccCC-CcccccCCCcc----cCC-----CCCC
Q 025316 150 SMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLE--------DEEIGSIPF-VWNFLEGHNMV----VEN-----DPTT 211 (254)
Q Consensus 150 GVmLiNl~~~~~~~l~~~~~~~~~~~~~~~f~~~~--------~~~i~~L~~-~wN~~~~~~~~----~~~-----~~~~ 211 (254)
||||||+++||..++++++.+..... ...+.+.| ++++..||. +||++.++... ... ...+
T Consensus 160 GV~linl~~~R~~~~~~~~~~~~~~~-~~~~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~~~~~~~~~~~~~~~~~~~~ 238 (276)
T 3tzt_A 160 GLLLINLKRAREEIDPDEIFSFVEDN-HMNLLLPDQDILNAMYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLMD 238 (276)
T ss_dssp EEEEEEHHHHHHHCCHHHHHHHHHHC---------CHHHHHHHGGGEEEEEHHHHSEETTCHHHHHHHTTTCCSHHHHHH
T ss_pred eEEEEEHHHHHhhhHHHHHHHHHHhc-cccccCCChhHHHHHHhCCEEECCchheeeecccchhhhccccchhhhhhhcc
Confidence 99999988877667777665432211 01112233 346789998 99999875421 000 1234
Q ss_pred CCeEEEeCC-CCCCcCCCCCCccHHhHHHHHHHHH
Q 025316 212 FPKAIHYTR-GGPWFEAWKHCEFADLWLKEMEEYK 245 (254)
Q Consensus 212 ~p~IIHyt~-~KPW~~~~~~~p~~~~w~~y~~~~~ 245 (254)
+|+||||+| .|||+.. +.++|+++||+|++.+.
T Consensus 239 ~~~iiHy~g~~KPW~~~-~~~~~~~~w~~Y~~~~~ 272 (276)
T 3tzt_A 239 HTVVLHFCGRDKPWKKN-HRNKFTSLYKHYMSLTK 272 (276)
T ss_dssp HCCEEECCSSCCTTSTT-CCSTTHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCcCCC-CCCchHHHHHHHHHHHH
Confidence 799999999 9999964 58999999999988654
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| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* | Back alignment and structure |
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| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* | Back alignment and structure |
|---|
| >3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 254 | ||||
| d1ga8a_ | 282 | c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri | 0.001 |
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Galactosyltransferase LgtC domain: Galactosyltransferase LgtC species: Neisseria meningitidis [TaxId: 487]
Score = 37.2 bits (85), Expect = 0.001
Identities = 26/262 (9%), Positives = 62/262 (23%), Gaps = 30/262 (11%)
Query: 12 RETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQ 71
+ + V D A R + L+ ++ + D +G R
Sbjct: 23 EAAHPDTEIRFHV-LDAGISEANRAAVAANLRGGGGNIRFIDVNPEDF--AGFPLNIRHI 79
Query: 72 TESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPKE 131
+ +T ++R +++D D L + L D + + ++
Sbjct: 80 SITT---YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQ 136
Query: 132 TTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLED------ 185
+ ++L N + + +D
Sbjct: 137 EGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLF 196
Query: 186 -EEIGSIPFVWNFLEGHNMVVENDPTTF---------------PKAIHYT-RGGPWFEAW 228
+ +NF+ + + N + HY PW
Sbjct: 197 KGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDC 256
Query: 229 KHCEFADLWLKEMEEYKNEANK 250
A+ + + +
Sbjct: 257 TA-WGAERFTELAGSLTTVPEE 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| d1ga8a_ | 282 | Galactosyltransferase LgtC {Neisseria meningitidis | 100.0 | |
| d1ll2a_ | 263 | Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: | 99.94 |
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Galactosyltransferase LgtC domain: Galactosyltransferase LgtC species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=4.1e-38 Score=277.93 Aligned_cols=224 Identities=10% Similarity=0.039 Sum_probs=156.7
Q ss_pred eEEEEEecCCchhhhHHHHHHHhHhCC-CCeEEEEeecc-------ccc----c--cCceee----------ccCCCCCC
Q 025316 20 FKIFVGYDPREDLAYRVCHRSILKRSS-IPVKITPIVQS-------DLR----K--SGLYWR----------ERGQTEST 75 (254)
Q Consensus 20 i~I~~g~D~~~~~~~~v~i~SI~~~~~-~~v~i~~i~~~-------~l~----~--~~~~~~----------~~~~~~~t 75 (254)
|||++++|++|+.++.|++.||++++. .++.|++++.. .+. . ..+... .....+.+
T Consensus 1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 80 (282)
T d1ga8a_ 1 MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHIS 80 (282)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCTTCC
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccccccccccC
Confidence 689999999999999999999999764 67899888632 010 0 011000 00123457
Q ss_pred cceeehhehhhhcCCCCeEEEEeCCEEEecChHHHHccCCCCceeEEEeccCCcc--ccccccCCccCCCCCcceeeEEE
Q 025316 76 EFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPK--ETTKMDGAVQTVYPRKNWSSMVL 153 (254)
Q Consensus 76 ~~ty~R~~ip~l~~~~~k~LYLD~DiIv~~dl~eL~~~dl~~~~vaaV~d~~~~~--~~~~~~g~~~~~Y~~fN~sGVmL 153 (254)
.++|+||++|+++|..+|+|||||||||.+||++||+++++++.+|||.|..... ......|.. ...+||| |||||
T Consensus 81 ~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~-~~~~yfN-sGVml 158 (282)
T d1ga8a_ 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMA-DGEYYFN-AGVLL 158 (282)
T ss_dssp GGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCC-TTSCCEE-EEEEE
T ss_pred HHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCC-CCCceee-cceee
Confidence 8999999999999988999999999999999999999999999999998631111 111223321 1224599 99999
Q ss_pred EeCCccccccccHHHHHhcccc---c-cccccc---ccCCcccccCCCcccccCCCccc---------------CCCCCC
Q 025316 154 YNCGHPKNKILTPEVVNTQTGA---F-LHRFQW---LEDEEIGSIPFVWNFLEGHNMVV---------------ENDPTT 211 (254)
Q Consensus 154 iNl~~~~~~~l~~~~~~~~~~~---~-~~~f~~---~~~~~i~~L~~~wN~~~~~~~~~---------------~~~~~~ 211 (254)
||+++|+..++++++++..... . ..+++. +..+++..||++||++....... ......
T Consensus 159 ~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (282)
T d1ga8a_ 159 INLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVM 238 (282)
T ss_dssp ECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCS
T ss_pred echhhhhhhhHHHHHHHHHHhcccCcccCchhHHHHHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccC
Confidence 9988877667777766543211 1 111111 22456789999999885322110 012345
Q ss_pred CCeEEEeCC-CCCCcCCCCCCccHHhHHHHHHHHHH
Q 025316 212 FPKAIHYTR-GGPWFEAWKHCEFADLWLKEMEEYKN 246 (254)
Q Consensus 212 ~p~IIHyt~-~KPW~~~~~~~p~~~~w~~y~~~~~~ 246 (254)
+|+||||+| .|||+.. +.+++++.|++|..+...
T Consensus 239 ~~~iiHf~G~~KPW~~~-~~~~~~~~~~~~~~~~~~ 273 (282)
T d1ga8a_ 239 PVAVSHYCGPAKPWHRD-CTAWGAERFTELAGSLTT 273 (282)
T ss_dssp SCSEEECCSSCCTTSTT-CCSTTTHHHHHHHTTCSC
T ss_pred CCEEEeeCCCCCCCCCC-CCChhHHHHHHHHHhhhc
Confidence 799999999 9999965 478999999999876533
|
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|