Citrus Sinensis ID: 025317

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccEEcccccEEEEEEcccccccccccEEEEEEEEEEccccEEcccccccccEEEEcccccccccHHHHHcccccccEEEEEEccccccccccccccccccEEEEEEEEEEEccccccccccccccccc
ccEEEEcccccccccccccEEEHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccEEEEEEcccccccccccEEEEEEEEEEccccEEcccccccccEEEEccccccccccHHHHHccccccEEEEEEccHHccccccccccccccEEEEEEEEEEEccccccEEEEEEcEEcc
mqmilsssssslpipsfpckcfstfhalrtffpqkkhivrcssshnlkdngfhckvklkrRVVPFLlfssglfptlsasgktksknpydeKRLLEQNKRmqkensapegfpnfirEGFEVKVvtsenytkrdsgliyrdfevgkgdcpkdgQQVIFHYIGynesgrridstylqgsparirmgtnalvpgfeegirdmrpggkrriiippelgppvgpstffsakqFEVFDVELLSVQDCQRRTIGFYSDVVCN
mqmilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSsglfptlsasgktksknpydeKRLLEQNkrmqkensapegfpnfireGFEVKVvtsenytkrdsgliyrDFEVGKGDCPKDGQQVIFHYIgynesgrriDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQdcqrrtigfysdvvcn
MQMilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
**************PSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPT***********************************PNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIR******KRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVC*
*********SSLPIPSFPC***************KKHIVRCSSS**************KRRVVPFLLFSSG***************************************************VT*ENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
************PIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSAS********YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
********SSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFYSDVVCN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q0WRJ7242 Peptidyl-prolyl cis-trans yes no 0.826 0.867 0.748 1e-84
O22870223 Peptidyl-prolyl cis-trans no no 0.755 0.860 0.294 1e-12
P65764270 FKBP-type peptidyl-prolyl yes no 0.496 0.466 0.344 2e-12
P65765270 FKBP-type peptidyl-prolyl N/A no 0.496 0.466 0.344 2e-12
P45523270 FKBP-type peptidyl-prolyl N/A no 0.496 0.466 0.344 2e-12
Q9LYR5256 Peptidyl-prolyl cis-trans no no 0.437 0.433 0.314 5e-11
P0A0W2109 FK506-binding protein OS= yes no 0.421 0.981 0.333 6e-11
Q54NB6364 FK506-binding protein 4 O yes no 0.377 0.263 0.360 1e-10
P56989109 FK506-binding protein OS= yes no 0.413 0.963 0.330 2e-10
O81864229 Peptidyl-prolyl cis-trans no no 0.429 0.475 0.302 6e-10
>sp|Q0WRJ7|FK202_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/219 (74%), Positives = 187/219 (85%), Gaps = 9/219 (4%)

Query: 39  VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
           V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct: 30  VCCSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query: 97  NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIF 156
           NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+GD PKDGQQV F
Sbjct: 84  NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFPKDGQQVTF 143

Query: 157 HYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216
           HYIGYNESGRRIDSTY+QGSPARIRMGTNALVPGFE GIRDM+PGG+RRIIIPPELGPPV
Sbjct: 144 HYIGYNESGRRIDSTYIQGSPARIRMGTNALVPGFEMGIRDMKPGGRRRIIIPPELGPPV 203

Query: 217 GPSTFFSAKQFEVFDVELLSVQDCQRRT-IGFYSDVVCN 254
           GPSTFFS+KQFEVFDVELLS+Q+C+RRT IGFYSDV C+
Sbjct: 204 GPSTFFSSKQFEVFDVELLSIQNCERRTIIGFYSDVTCS 242
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Involved in the accumulation of the PSII complex.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|O22870|FK163_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2 Back     alignment and function description
>sp|P65764|FKBA_ECOL6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fkpA PE=3 SV=1 Back     alignment and function description
>sp|P65765|FKBA_ECO57 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli O157:H7 GN=fkpA PE=3 SV=1 Back     alignment and function description
>sp|P45523|FKBA_ECOLI FKBP-type peptidyl-prolyl cis-trans isomerase FkpA OS=Escherichia coli (strain K12) GN=fkpA PE=1 SV=1 Back     alignment and function description
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1 Back     alignment and function description
>sp|P0A0W2|FKBP_NEIMB FK506-binding protein OS=Neisseria meningitidis serogroup B (strain MC58) GN=fbp PE=1 SV=1 Back     alignment and function description
>sp|Q54NB6|FKBP4_DICDI FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1 Back     alignment and function description
>sp|P56989|FKBP_NEIMA FK506-binding protein OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=fbp PE=3 SV=1 Back     alignment and function description
>sp|O81864|FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
225453422258 PREDICTED: FKBP-type peptidyl-prolyl cis 0.988 0.972 0.723 1e-101
224137178210 predicted protein [Populus trichocarpa] 0.822 0.995 0.778 2e-95
255541078265 fk506-binding protein, putative [Ricinus 0.854 0.818 0.788 3e-95
449431986260 PREDICTED: peptidyl-prolyl cis-trans iso 0.992 0.969 0.676 1e-94
351726032248 uncharacterized protein LOC100305486 [Gl 0.948 0.971 0.687 2e-94
356520790248 PREDICTED: FKBP-type peptidyl-prolyl cis 0.917 0.939 0.695 9e-93
388505048246 unknown [Lotus japonicus] 0.905 0.934 0.708 2e-91
297820896244 immunophilin [Arabidopsis lyrata subsp. 0.826 0.860 0.757 1e-84
115472151258 Os07g0490400 [Oryza sativa Japonica Grou 0.732 0.720 0.784 7e-84
357122775250 PREDICTED: FKBP-type peptidyl-prolyl cis 0.771 0.784 0.748 5e-83
>gi|225453422|ref|XP_002274957.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic [Vitis vinifera] gi|297734593|emb|CBI16644.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/257 (72%), Positives = 210/257 (81%), Gaps = 6/257 (2%)

Query: 3   MILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNG------FHCKV 56
           M+   +   LP P  P +  S    + +FF  KK I+ C SS+NLKD           + 
Sbjct: 1   MLWLPTHPLLPQPYIPYRYLSACRTVGSFFSLKKPILHCRSSYNLKDYREQKGCVLPYEE 60

Query: 57  KLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIRE 116
            L+RR++ F L SSG FPTLS+S KTKSKNPYDEKRLL+QNKR+QKEN+APE FPNF+RE
Sbjct: 61  NLRRRLLIFFLVSSGCFPTLSSSAKTKSKNPYDEKRLLQQNKRIQKENNAPEDFPNFVRE 120

Query: 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGS 176
           GFEVKVVT ENY   DSGLIYRDFEVGKGDCPK GQQV FHY+GYNESGRRIDS+Y+QGS
Sbjct: 121 GFEVKVVTPENYITSDSGLIYRDFEVGKGDCPKAGQQVTFHYVGYNESGRRIDSSYMQGS 180

Query: 177 PARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLS 236
           PA+IRMGTNALVPGFEEGIRDM+PGGKRRIIIPPELGPPVGPSTFFS+KQFEVFDVELL+
Sbjct: 181 PAKIRMGTNALVPGFEEGIRDMKPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLN 240

Query: 237 VQDCQRRTIGFYSDVVC 253
           V+DCQRRTIGFYSDVVC
Sbjct: 241 VKDCQRRTIGFYSDVVC 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224137178|ref|XP_002327057.1| predicted protein [Populus trichocarpa] gi|222835372|gb|EEE73807.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541078|ref|XP_002511603.1| fk506-binding protein, putative [Ricinus communis] gi|223548783|gb|EEF50272.1| fk506-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449431986|ref|XP_004133781.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351726032|ref|NP_001236089.1| uncharacterized protein LOC100305486 [Glycine max] gi|255625657|gb|ACU13173.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356520790|ref|XP_003529043.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|388505048|gb|AFK40590.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297820896|ref|XP_002878331.1| immunophilin [Arabidopsis lyrata subsp. lyrata] gi|297324169|gb|EFH54590.1| immunophilin [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115472151|ref|NP_001059674.1| Os07g0490400 [Oryza sativa Japonica Group] gi|33146997|dbj|BAC80069.1| putative FKBP-type peptidyl-prolyl cis-trans isomerase; protein [Oryza sativa Japonica Group] gi|113611210|dbj|BAF21588.1| Os07g0490400 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357122775|ref|XP_003563090.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic-like isoform 1 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2103366242 AT3G60370 "AT3G60370" [Arabido 0.826 0.867 0.748 5.6e-84
UNIPROTKB|Q7XHR0258 P0477A12.35 "Peptidyl-prolyl c 0.771 0.759 0.760 5.2e-81
UNIPROTKB|A8HTG4269 FKB20-2 "Peptidyl-prolyl cis-t 0.641 0.605 0.615 1.7e-52
UNIPROTKB|Q7NMC5161 glr0841 "Peptidyl-prolyl cis-t 0.440 0.695 0.389 5.3e-17
UNIPROTKB|Q74AS7156 GSU2274 "Peptidyl-prolyl cis-t 0.413 0.673 0.396 1.1e-16
TIGR_CMR|GSU_2274156 GSU_2274 "FKBP-type peptidyl-p 0.413 0.673 0.396 1.1e-16
UNIPROTKB|P45523270 fkpA [Escherichia coli K-12 (t 0.523 0.492 0.340 2.9e-16
UNIPROTKB|A9WGZ8 237 Caur_0860 "Peptidyl-prolyl cis 0.413 0.443 0.415 1.3e-15
UNIPROTKB|Q9KV04259 VC_0354 "Peptidyl-prolyl cis-t 0.570 0.559 0.313 1.8e-14
TIGR_CMR|VC_0354259 VC_0354 "peptidyl-prolyl cis-t 0.570 0.559 0.313 1.8e-14
TAIR|locus:2103366 AT3G60370 "AT3G60370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 164/219 (74%), Positives = 187/219 (85%)

Query:    39 VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
             V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct:    30 VCCSLSEEPKDQ---C---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query:    97 NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIF 156
             NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+GD PKDGQQV F
Sbjct:    84 NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFPKDGQQVTF 143

Query:   157 HYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216
             HYIGYNESGRRIDSTY+QGSPARIRMGTNALVPGFE GIRDM+PGG+RRIIIPPELGPPV
Sbjct:   144 HYIGYNESGRRIDSTYIQGSPARIRMGTNALVPGFEMGIRDMKPGGRRRIIIPPELGPPV 203

Query:   217 GPSTFFSAKQFEVFDVELLSVQDCQRRTI-GFYSDVVCN 254
             GPSTFFS+KQFEVFDVELLS+Q+C+RRTI GFYSDV C+
Sbjct:   204 GPSTFFSSKQFEVFDVELLSIQNCERRTIIGFYSDVTCS 242
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0005576 "extracellular region" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0016020 "membrane" evidence=IBA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0009543 "chloroplast thylakoid lumen" evidence=IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0010207 "photosystem II assembly" evidence=RCA;IMP
GO:0016491 "oxidoreductase activity" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|Q7XHR0 P0477A12.35 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8HTG4 FKB20-2 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NMC5 glr0841 "Peptidyl-prolyl cis-trans isomerase" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AS7 GSU2274 "Peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2274 GSU_2274 "FKBP-type peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P45523 fkpA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|A9WGZ8 Caur_0860 "Peptidyl-prolyl cis-trans isomerase" [Chloroflexus aurantiacus J-10-fl (taxid:324602)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KV04 VC_0354 "Peptidyl-prolyl cis-trans isomerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0354 VC_0354 "peptidyl-prolyl cis-trans isomerase, FKBP-type" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WRJ7FK202_ARATH5, ., 2, ., 1, ., 80.74880.82670.8677yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.976
4th Layer5.2.1.80.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_40000135
hypothetical protein (210 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.2120.1
RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (156 aa)
  •     0.496
estExt_Genewise1_v1.C_LG_VII1249
hypothetical protein (113 aa)
  •   • 0.484
eugene3.00080515
hypothetical protein (206 aa)
  •     0.482

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 2e-23
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 9e-20
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 3e-17
COG1047174 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans 2e-10
PRK11570206 PRK11570, PRK11570, peptidyl-prolyl cis-trans isom 3e-06
PRK15095156 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis- 3e-05
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 93.6 bits (233), Expect = 2e-23
 Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 26/168 (15%)

Query: 81  KTKSKNPYDEKRLLEQ-NKRMQKENSAPEGFPNFIREGFEVK--VVTSENYTKRDSGLIY 137
                    E+RL +    +  K+ +A         E    +  V T        SGL Y
Sbjct: 52  AALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLP------SGLQY 105

Query: 138 RDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRD 197
           +  + G G  PK G  V  HY G    G   DS+Y +G PA   +G   ++PG++EG++ 
Sbjct: 106 KVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQG 163

Query: 198 MRPGGKRRIIIPPELG------PPVGP--STFFSAKQFEVFDVELLSV 237
           M+ GGKR++ IPPEL       P V P  ST        VF+VELL V
Sbjct: 164 MKVGGKRKLTIPPELAYGERGVPGVIPPNSTL-------VFEVELLDV 204

Length = 205
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.97
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.96
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.94
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.94
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.93
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.92
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.85
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.72
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.71
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.6
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.56
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 99.1
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.03
PRK01490 435 tig trigger factor; Provisional 99.0
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.94
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 97.99
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.27
PRK1008148 entericidin B membrane lipoprotein; Provisional 80.69
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=2.8e-30  Score=214.19  Aligned_cols=119  Identities=37%  Similarity=0.666  Sum_probs=108.6

Q ss_pred             ceeeeeeccCceeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHcc
Q 025317          118 FEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRD  197 (254)
Q Consensus       118 ~~~~~~~~~~~~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~  197 (254)
                      |.........+.++++||.|++++.|+|..++.+|.|+|||+|++.||++||+++.+++|+.|.+|  ++|+||.+||.+
T Consensus        86 f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~  163 (205)
T COG0545          86 FLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQG  163 (205)
T ss_pred             HHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhh
Confidence            344445556778899999999999999999999999999999999999999999999999999996  999999999999


Q ss_pred             CCCccEEEEEECCCCCCCCCC-CCCCCCCceEEEEEEEEeee
Q 025317          198 MRPGGKRRIIIPPELGPPVGP-STFFSAKQFEVFDVELLSVQ  238 (254)
Q Consensus       198 mk~Ge~~~i~iP~~layG~~~-~~~ip~~s~Lvf~vel~~i~  238 (254)
                      |++|++|+++||+++|||... +..||||++|+|+|+|++|.
T Consensus       164 M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         164 MKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             CCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence            999999999999999999544 55599999999999999874

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10081 entericidin B membrane lipoprotein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-13
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 1e-13
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-13
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-13
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 3e-13
1q6u_A245 Crystal Structure Of Fkpa From Escherichia Coli Len 3e-13
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 4e-13
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 5e-13
1q6h_A224 Crystal Structure Of A Truncated Form Of Fkpa From 6e-13
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-12
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 1e-11
1u79_A129 Crystal Structure Of Atfkbp13 Length = 129 9e-10
1bl4_A107 Fkbp Mutant F36v Complexed With Remodeled Synthetic 4e-08
2dg4_A107 Fk506-Binding Protein Mutant Wf59 Complexed With Ra 4e-08
1yat_A113 Improved Calcineurin Inhibition By Yeast Fkbp12-Dru 4e-08
1c9h_A107 Crystal Structure Of Fkbp12.6 In Complex With Rapam 5e-08
1eym_A107 Fk506 Binding Protein Mutant, Homodimeric Complex L 6e-08
1tco_C107 Ternary Complex Of A Calcineurin A Fragment, Calcin 8e-08
1fkb_A107 Atomic Structure Of The Rapamycin Human Immunophili 8e-08
3h9r_B109 Crystal Structure Of The Kinase Domain Of Type I Ac 9e-08
1bkf_A107 Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX 9e-08
3jxv_A 356 Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk 1e-07
2fap_A107 The Structure Of The Immunophilin-Immunosuppressant 1e-07
3jym_A 377 Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk 1e-07
2dg9_A107 Fk506-Binding Protein Mutant Wl59 Complexed With Ra 2e-07
1fkk_A107 Atomic Structure Of Fkbp12, An Immunophilin Binding 2e-07
2ppp_A107 Crystal Structure Of E60q Mutant Of Fkbp12 Length = 2e-07
2pbc_A102 Fk506-Binding Protein 2 Length = 102 4e-07
2ppo_A107 Crystal Structure Of E60a Mutant Of Fkbp12 Length = 4e-07
2lgo_A130 Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol 1e-06
3uqi_A108 Crystallographic Structure Of Fkbp12 From Aedes Aeg 2e-06
1fd9_A213 Crystal Structure Of The Macrophage Infectivity Pot 2e-05
2uz5_A137 Solution Structure Of The Fkbp-Domain Of Legionella 3e-05
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 4e-05
1jvw_A167 Trypanosoma Cruzi Macrophage Infectivity Potentiato 5e-05
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure 
Iteration: 1

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 89  DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
           D  R L    R+Q + + PE      N I E    ++  S   T  +SGL Y D   G G
Sbjct: 59  DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
              + GQ V  HY G+   G++ DS+  +  P    +G   ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
           + IPP+LG    G +         VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129 Back     alignment and structure
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107 Back     alignment and structure
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113 Back     alignment and structure
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107 Back     alignment and structure
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107 Back     alignment and structure
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107 Back     alignment and structure
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107 Back     alignment and structure
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109 Back     alignment and structure
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107 Back     alignment and structure
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356 Back     alignment and structure
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107 Back     alignment and structure
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377 Back     alignment and structure
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107 Back     alignment and structure
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102 Back     alignment and structure
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130 Back     alignment and structure
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108 Back     alignment and structure
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213 Back     alignment and structure
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 3e-29
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 9e-28
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 3e-27
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 3e-27
1fd9_A213 Protein (macrophage infectivity potentiator prote; 9e-27
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 1e-26
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 1e-26
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 2e-26
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 9e-26
1jvw_A167 Macrophage infectivity potentiator; chagas disease 1e-25
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 2e-25
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 2e-25
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 3e-25
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 2e-17
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-15
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 3e-25
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 8e-25
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 5e-14
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 2e-24
2ppn_A107 FK506-binding protein 1A; high resolution protein 2e-24
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 5e-24
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 6e-23
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 3e-22
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 2e-21
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 1e-20
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 1e-19
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 3e-19
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 1e-18
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 9e-10
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 3e-16
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 2e-14
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 7e-13
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 2e-12
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 6e-12
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 8e-12
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 8e-10
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 9e-10
3prb_A 231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 2e-09
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 4e-07
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
 Score =  108 bits (271), Expect = 3e-29
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 81  KTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREG-FEVKVVTSENYTKRDSGLIYRD 139
             +     D  R L    R+Q + +  +             + +        +SGL Y D
Sbjct: 51  AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYED 110

Query: 140 FEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMR 199
              G G   + GQ V  HY G+   G++ DS+  +  P    +G   ++ G++EG++ M+
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK 170

Query: 200 PGGKRRIIIPPELG------PPVGP--STFFSAKQFEVFDVELLSV 237
            GG RR+ IPP+LG        V P  +T        VF+VELL V
Sbjct: 171 VGGVRRLTIPPQLGYGARGAAGVIPPNATL-------VFEVELLDV 209
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169 Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171 Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151 Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158 Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.94
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.94
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.94
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.94
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.94
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.94
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.94
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.94
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.94
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.93
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.93
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.93
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.93
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.93
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.93
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.93
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.93
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.93
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.93
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.93
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.92
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.91
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.9
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.89
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.87
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.86
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.86
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.85
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.83
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.75
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.74
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.71
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.71
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.7
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.68
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.67
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.67
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.61
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.59
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.47
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.35
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.33
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 98.28
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
Probab=99.94  E-value=1.2e-26  Score=178.19  Aligned_cols=109  Identities=31%  Similarity=0.526  Sum_probs=101.5

Q ss_pred             eCCCceEEEEEeccCCCC-CCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEE
Q 025317          130 KRDSGLIYRDFEVGKGDC-PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIII  208 (254)
Q Consensus       130 ~~~~Gl~y~i~~~G~G~~-~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~i  208 (254)
                      .+++|++|+++++|+|.. ++.||.|++||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|+++++.|
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            367899999999999997 9999999999999999999999998767899999999999999999999999999999999


Q ss_pred             CCCCCCCC-CCCCCCCCCceEEEEEEEEeee
Q 025317          209 PPELGPPV-GPSTFFSAKQFEVFDVELLSVQ  238 (254)
Q Consensus       209 P~~layG~-~~~~~ip~~s~Lvf~vel~~i~  238 (254)
                      |++++||. +.+..||||++|+|+|+|++|+
T Consensus        83 p~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            99999994 4455699999999999999984
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 6e-20
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 2e-18
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 2e-17
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 2e-17
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 3e-17
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 3e-17
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 4e-17
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 2e-16
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 3e-15
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 1e-14
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 3e-14
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 7e-11
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 3e-09
d1ix5a_151 d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu 5e-09
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 83.0 bits (204), Expect = 6e-20
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 24/158 (15%)

Query: 88  YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDC 147
                  +  K      +  + +     +   VK           +GL+Y+  E GKG+ 
Sbjct: 70  VKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVK--------TSSTGLVYQVVEAGKGEA 121

Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
           PKD   V+ +Y G    G+  D++Y +G P   R+    ++PG+ EG+++++ GGK +++
Sbjct: 122 PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 179

Query: 208 IPPELG------PPVGP-STFFSAKQFEVFDVELLSVQ 238
           IPPEL       P + P ST        VFDVELL V+
Sbjct: 180 IPPELAYGKAGVPGIPPNSTL-------VFDVELLDVK 210
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.95
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.95
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.95
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.95
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.95
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.95
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.95
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.94
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.94
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.9
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.87
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.67
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.63
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.26
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 99.15
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=185.02  Aligned_cols=105  Identities=30%  Similarity=0.605  Sum_probs=99.4

Q ss_pred             ceEEEEEeccCCCC-CCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCC
Q 025317          134 GLIYRDFEVGKGDC-PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPEL  212 (254)
Q Consensus       134 Gl~y~i~~~G~G~~-~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~l  212 (254)
                      |++|+++++|+|+. |+.||.|++||++++.||++|+++++.+.|+.|.+|.+++++||+++|.+|++||+++++|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999975 79999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCCCCCceEEEEEEEEeee
Q 025317          213 GPP-VGPSTFFSAKQFEVFDVELLSVQ  238 (254)
Q Consensus       213 ayG-~~~~~~ip~~s~Lvf~vel~~i~  238 (254)
                      ||| .+.++.||||++|+|+|+|++|+
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999 55566799999999999999985
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure