Citrus Sinensis ID: 025328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNHFI
cccEEEEEcccccccccccccccEEEEccccccHHHHHHHHccccccEEEEEccccccEEEEEccccccccccEEEEccccccccccEEEEEEEEEEccEEEccccccEEEEccccccEEcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEcccEEEEEEcccEEEEEEEccccccccccEEEcccEEEEEEEEEEccccEEEEEcccccccccccccc
cccEEEEccccccccccccccccEEEEcccccccHHHHHHHccccccEEEEEEccccccEEEEccccccccccEEEcccccccccccEEEEEEEEEEccEEEcccccEEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccHHccccEEEEEEEcccccEEEEEcccHEEEEEcccEEEEEEEcccccccccEEEEEEEEEccEEEEEEccccEEEEEcccccccccccccc
mlsfcscgynqhnpgplsppdtagvlglgrgrISIVSQLREYGLIRNVIGhcigqngrgvlflgdgkvpssgvawtpmlqnsadlkhyilgpaellysgkscglkdltlifdsgasyayFTSRVYQEIVSLIMRDLigtplklapddktlpicwrgpfkalgQVTEYFKPLAlsftnrrnsvrlvvppeaylvISGRKNVCLGilngseaevgenniigeifmqdkmviydnekqrigwkpedcntllslnhfi
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALsftnrrnsvrlvVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKqrigwkpedcntllslnhfi
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNHFI
**********************AGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSL****
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLI********DDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTL*S*NH**
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNHFI
MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLN*F*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNHFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.937 0.580 0.382 3e-44
Q0IU52410 Aspartic proteinase Asp1 no no 0.937 0.580 0.378 1e-43
Q9S9K4475 Aspartic proteinase-like no no 0.893 0.477 0.296 1e-17
Q9LX20528 Aspartic proteinase-like no no 0.818 0.393 0.259 3e-11
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function desciption
 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 13/251 (5%)

Query: 7   CGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLI-RNVIGHCIGQNGRGVLFLGD 65
           CGYNQ       P    G+LGLGRG+++++SQL+  G+I ++V+GHCI   G+G LF GD
Sbjct: 152 CGYNQGKNNHNVPTPVNGILGLGRGKVTLLSQLKSQGVITKHVLGHCISSKGKGFLFFGD 211

Query: 66  GKVPSSGVAWTPMLQNSADLKHYI--LGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123
            KVP+SGV W+PM   + + KHY    G  +   + K      + +IFDSGA+Y YF  +
Sbjct: 212 AKVPTSGVTWSPM---NREHKHYSPRQGTLQFNSNSKPISAAPMEVIFDSGATYTYFALQ 268

Query: 124 VYQEIVSLIMRDLIGTP---LKLAPDDKTLPICWRG--PFKALGQVTEYFKPLALSFTNR 178
            Y   +S++   L        ++   D+ L +CW+G    + + +V + F+ L+L F + 
Sbjct: 269 PYHATLSVVKSTLSKECKFLTEVKEKDRALTVCWKGKDKIRTIDEVKKCFRSLSLKFADG 328

Query: 179 RNSVRLVVPPEAYLVISGRKNVCLGILNGSEAE--VGENNIIGEIFMQDKMVIYDNEKQR 236
                L +PPE YL+IS   +VCLGIL+GS+    +   N+IG I M D+MVIYD+E+  
Sbjct: 329 DKKATLEIPPEHYLIISQEGHVCLGILDGSKEHPSLAGTNLIGGITMLDQMVIYDSERSL 388

Query: 237 IGWKPEDCNTL 247
           +GW    C+ +
Sbjct: 389 LGWVNYQCDRI 399
Possesses protease activity in vitro.
Oryza sativa subsp. indica (taxid: 39946)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
224082314 410 predicted protein [Populus trichocarpa] 0.937 0.580 0.559 1e-72
356554625 452 PREDICTED: aspartic proteinase Asp1-like 0.940 0.528 0.567 2e-72
297841447 410 hypothetical protein ARALYDRAFT_475850 [ 0.937 0.580 0.547 4e-72
255558640 424 nucellin, putative [Ricinus communis] gi 0.940 0.563 0.543 5e-72
224066811 422 predicted protein [Populus trichocarpa] 0.940 0.566 0.543 9e-72
15219354 405 aspartyl protease-like protein [Arabidop 0.937 0.587 0.547 9e-72
356515904 421 PREDICTED: aspartic proteinase Asp1-like 0.952 0.574 0.550 8e-71
449464178 437 PREDICTED: aspartic proteinase Asp1-like 0.937 0.544 0.543 1e-70
356509401 407 PREDICTED: aspartic proteinase Asp1-like 0.956 0.597 0.560 3e-69
356500374 454 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.956 0.535 0.554 6e-69
>gi|224082314|ref|XP_002306645.1| predicted protein [Populus trichocarpa] gi|222856094|gb|EEE93641.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/243 (55%), Positives = 180/243 (74%), Gaps = 5/243 (2%)

Query: 7   CGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDG 66
           CGY+Q + GP  PPDTAG+LGLGRG++SI+SQLR  G+ +NV+GHC  +   G LF GD 
Sbjct: 168 CGYDQKHLGPHPPPDTAGILGLGRGKVSILSQLRTLGITQNVVGHCFSRARGGFLFFGDH 227

Query: 67  KVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQ 126
             PSS + WTPML++S+D   Y  GPAELL+ GK  G+K L LIFDSG+SY YF ++VYQ
Sbjct: 228 LFPSSRITWTPMLRSSSD-TLYSSGPAELLFGGKPTGIKGLQLIFDSGSSYTYFNAQVYQ 286

Query: 127 EIVSLIMRDLIGTPLKLAPDDKTLPICWR--GPFKALGQVTEYFKPLALSFTNRRNSVRL 184
            I++L+ +DL G PLK AP +K L +CW+   P K++  +  YFKPL +SF N +N V+L
Sbjct: 287 SILNLVRKDLAGKPLKDAP-EKELAVCWKTAKPIKSILDIKSYFKPLTISFMNAKN-VQL 344

Query: 185 VVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 244
            + PE YL+I+   NVCLGILNGSE ++G  N+IG+IFMQD++VIYDNEKQ+IGW P +C
Sbjct: 345 QLAPEDYLIITKDGNVCLGILNGSEQQLGNFNVIGDIFMQDRVVIYDNEKQQIGWFPANC 404

Query: 245 NTL 247
           + L
Sbjct: 405 DRL 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356554625|ref|XP_003545645.1| PREDICTED: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information
>gi|297841447|ref|XP_002888605.1| hypothetical protein ARALYDRAFT_475850 [Arabidopsis lyrata subsp. lyrata] gi|297334446|gb|EFH64864.1| hypothetical protein ARALYDRAFT_475850 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255558640|ref|XP_002520345.1| nucellin, putative [Ricinus communis] gi|223540564|gb|EEF42131.1| nucellin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066811|ref|XP_002302227.1| predicted protein [Populus trichocarpa] gi|222843953|gb|EEE81500.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15219354|ref|NP_175079.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|12320825|gb|AAG50556.1|AC074228_11 nucellin, putative [Arabidopsis thaliana] gi|332193902|gb|AEE32023.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356515904|ref|XP_003526637.1| PREDICTED: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information
>gi|449464178|ref|XP_004149806.1| PREDICTED: aspartic proteinase Asp1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356509401|ref|XP_003523438.1| PREDICTED: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information
>gi|356500374|ref|XP_003519007.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2205861405 AT1G44130 [Arabidopsis thalian 0.937 0.587 0.555 9.9e-71
TAIR|locus:2204725466 AT1G77480 [Arabidopsis thalian 0.980 0.534 0.521 4.3e-70
TAIR|locus:2028466583 AT1G49050 [Arabidopsis thalian 0.960 0.418 0.378 3.1e-44
TAIR|locus:2167776 631 AT5G43100 [Arabidopsis thalian 0.905 0.364 0.268 1.8e-18
TAIR|locus:2200365475 AT1G65240 [Arabidopsis thalian 0.893 0.477 0.296 2.5e-18
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.858 0.443 0.278 4.4e-17
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.889 0.465 0.282 9e-17
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.870 0.431 0.259 2.2e-16
TAIR|locus:2183617482 AT5G36260 [Arabidopsis thalian 0.893 0.470 0.296 3.1e-16
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.885 0.461 0.290 4.1e-16
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 135/243 (55%), Positives = 175/243 (72%)

Query:     7 CGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDG 66
             CGY+Q  P    PP TAGVLGLGRG+I +++QL   GL RNV+GHC+   G G LF GD 
Sbjct:   163 CGYDQSYPSAHPPPATAGVLGLGRGKIGLLTQLVSAGLTRNVVGHCLSSKGGGFLFFGDN 222

Query:    67 KVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQ 126
              VPS GVAWTP+L  S D  HY  GPA+LL++GK  GLK L LIFD+G+SY YF S+ YQ
Sbjct:   223 LVPSIGVAWTPLL--SQD-NHYTTGPADLLFNGKPTGLKGLKLIFDTGSSYTYFNSKAYQ 279

Query:   127 EIVSLIMRDLIGTPLKLAPDDKTLPICWRG--PFKALGQVTEYFKPLALSFTNRRNSVRL 184
              I++LI  DL  +PLK+A +DKTLPICW+G  PFK++ +V  +FK + ++FTN R + +L
Sbjct:   280 TIINLIGNDLKVSPLKVAKEDKTLPICWKGAKPFKSVLEVKNFFKTITINFTNGRRNTQL 339

Query:   185 VVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 244
              + PE YL++S   NVCLG+LNGSE  +  +N+IG+I MQ  M+IYDNEKQ++GW   DC
Sbjct:   340 YLAPELYLIVSKTGNVCLGLLNGSEVGLQNSNVIGDISMQGLMMIYDNEKQQLGWVSSDC 399

Query:   245 NTL 247
             N L
Sbjct:   400 NKL 402
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167776 AT5G43100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.5368.1
hypothetical protein (373 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 5e-88
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-28
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 7e-19
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 5e-13
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 1e-05
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-04
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 0.002
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  261 bits (670), Expect = 5e-88
 Identities = 114/238 (47%), Positives = 137/238 (57%), Gaps = 43/238 (18%)

Query: 7   CGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDG 66
           CGY+Q  P    PP T G+LGLGRG+IS+ SQL   G+I+NVIGHC+  NG G LF GD 
Sbjct: 79  CGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDD 138

Query: 67  KVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQ 126
            VPSSGV WTPM + S   KHY  GPA LL++G+  G K L ++FDSG+SY YF ++   
Sbjct: 139 LVPSSGVTWTPMRRESQK-KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQA-- 195

Query: 127 EIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVV 186
                                                   YFKPL L F     +  L +
Sbjct: 196 ----------------------------------------YFKPLTLKFGKGWRTRLLEI 215

Query: 187 PPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 244
           PPE YL+IS + NVCLGILNGSE  +G  NIIG+I MQ  MVIYDNEKQ+IGW   DC
Sbjct: 216 PPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.98
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.15
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.07
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 91.36
PF1365090 Asp_protease_2: Aspartyl protease 90.15
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 90.06
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.92
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 87.96
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.93
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 84.25
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 80.79
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 80.15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
Probab=100.00  E-value=6.4e-43  Score=303.84  Aligned_cols=226  Identities=25%  Similarity=0.393  Sum_probs=183.2

Q ss_pred             ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC---CCcEEEEECCCCCCCCCceEEec
Q 025328            2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ---NGRGVLFLGDGKVPSSGVAWTPM   78 (254)
Q Consensus         2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~---~~~G~l~fGg~~~~~~~i~~~pi   78 (254)
                      +++|||++.+++.+    ...+||||||++.+|++.|+..+  .+++||+||.+   ...|+|+|||+|+..+++.|+|+
T Consensus        65 ~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv  138 (299)
T cd05472          65 GFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPM  138 (299)
T ss_pred             CEEEECCccCCCcc----CCCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCC
Confidence            68999999887765    26899999999999999998765  46899999985   45899999999966889999999


Q ss_pred             ccCCCCCCCeEEeeeEEEECCEEecCC-----CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCCCcc
Q 025328           79 LQNSADLKHYILGPAELLYSGKSCGLK-----DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPIC  153 (254)
Q Consensus        79 ~~~~~~~~~y~v~l~~i~v~~~~~~~~-----~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C  153 (254)
                      +.++....+|.|++++|+|+++.+...     ...+||||||++++||+++|++|.+++.+.....  .+......++.|
T Consensus       139 ~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C  216 (299)
T cd05472         139 LSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAY--PRAPGFSILDTC  216 (299)
T ss_pred             ccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccC--CCCCCCCCCCcc
Confidence            986533479999999999999988652     4689999999999999999999999998876421  111112233469


Q ss_pred             cCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEe-CCCceEEEEEcCCcCCCCCceeeccceeeceEEEEeC
Q 025328          154 WRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS-GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDN  232 (254)
Q Consensus       154 ~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~-~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~vvfD~  232 (254)
                      +..+..   . ...+|+|+|+|++   ++.++|+|++|++.. ..+..|+++.....  ..+.+|||+.|||++|+|||+
T Consensus       217 ~~~~~~---~-~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~  287 (299)
T cd05472         217 YDLSGF---R-SVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVCLAFAGTSD--DGGLSIIGNVQQQTFRVVYDV  287 (299)
T ss_pred             CcCCCC---c-CCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEEEEEeCCCC--CCCCEEEchHHccceEEEEEC
Confidence            875311   1 1468999999985   499999999999943 34578998876532  135799999999999999999


Q ss_pred             CCCEEeeecCCC
Q 025328          233 EKQRIGWKPEDC  244 (254)
Q Consensus       233 ~~~rIGfa~~~c  244 (254)
                      +++|||||+++|
T Consensus       288 ~~~~igfa~~~C  299 (299)
T cd05472         288 AGGRIGFAPGGC  299 (299)
T ss_pred             CCCEEeEecCCC
Confidence            999999999999

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 5e-04
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 43/260 (16%)
Query: 19  PPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVP----SSGVA 74
           P  + GV GL    +++ SQ+     + N    C+   G GV   G G +P    +  + 
Sbjct: 136 PRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMD 195
Query: 75  WTPMLQNSADLKHYILGPAELLYSGK----SCGLKDLTLIFDSGASYAYFTSRVYQEIVS 130
           +TP++       HYI   +  + + +       L    ++  +   Y      VY+ +V 
Sbjct: 196 YTPLVAKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVD 255
Query: 131 LIMRDLIGTPLKLAPDDKTL-PICWRGPF------KALGQ-VTEYFKPLAL--------- 173
              + L   P   AP  + + P+    PF      K LG     Y+ P  L         
Sbjct: 256 AFTKALAAQPANGAPVARAVKPV---APFELCYDTKTLGNNPGGYWVPNVLLELDGGSDW 312
Query: 174 SFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNE 233
           + T + NS+  V P  A +     K V  G  +GS   V    I+G   M+D ++ +D E
Sbjct: 313 AMTGK-NSMVDVKPGTACVAFVEMKGVDAG--DGSAPAV----ILGGAQMEDFVLDFDME 365
Query: 234 KQRIGWKPEDCNTLLSLNHF 253
           K+R+G+        L L HF
Sbjct: 366 KKRLGF--------LRLPHF 377

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-42
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-41
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-39
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 3e-08
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 1e-07
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 4e-07
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 4e-05
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 5e-05
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-04
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 6e-04
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  148 bits (375), Expect = 1e-42
 Identities = 44/278 (15%), Positives = 90/278 (32%), Gaps = 35/278 (12%)

Query: 6   SCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIG--QNGRGVLFL 63
           SC     +          G+ GLGR RI++ SQ       +     C+    +   V+  
Sbjct: 137 SCAPT--SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIF 194

Query: 64  GDGK--------VPSSGVAWTPMLQNSADLK----------HYILGPAELLYSGKSCGLK 105
           G+          V    + +TP+L N                Y +G   +  + K   L 
Sbjct: 195 GNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALN 254

Query: 106 DLTL----------IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWR 155
              L             +   Y    + +Y+ +    +++     +           C+ 
Sbjct: 255 TSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFS 314

Query: 156 GPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGEN 215
                  ++      + L    +  SV   +     +V      VCLG+++G    +  +
Sbjct: 315 TDNILSTRLGPSVPSIDLVL--QSESVVWTITGSNSMVYINDNVVCLGVVDGGS-NLRTS 371

Query: 216 NIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNHF 253
            +IG   ++D +V +D    R+G+      +  +  +F
Sbjct: 372 IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.73
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 92.06
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=331.85  Aligned_cols=236  Identities=18%  Similarity=0.333  Sum_probs=189.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC--CCcEEEEECCCCC-------CCCC
Q 025328            2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ--NGRGVLFLGDGKV-------PSSG   72 (254)
Q Consensus         2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~G~l~fGg~~~-------~~~~   72 (254)
                      +++|||++++.....  ...+|||||||++++|++.||.++++++++||+||.+  +.+|+|+||+.+.       +.++
T Consensus       133 ~~~FGc~~~~~~~g~--~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~  210 (413)
T 3vla_A          133 RFIFSCAPTSLLQNL--ASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDK  210 (413)
T ss_dssp             EEEEEEECGGGGTTS--CTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTT
T ss_pred             CEEEECcccccccCc--ccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCC
Confidence            579999998732211  2578999999999999999999988789999999986  4689999999874       3567


Q ss_pred             -ceEEecccCCCC----------CCCeEEeeeEEEECCEEecCC----------CCeEEEecCCccEEeChHHHHHHHHH
Q 025328           73 -VAWTPMLQNSAD----------LKHYILGPAELLYSGKSCGLK----------DLTLIFDSGASYAYFTSRVYQEIVSL  131 (254)
Q Consensus        73 -i~~~pi~~~~~~----------~~~y~v~l~~i~v~~~~~~~~----------~~~~iiDSGTt~~~lp~~~~~~l~~~  131 (254)
                       +.|||++.++..          ..+|.|.|++|+||++.+.++          ...+||||||++++||+++|++|.++
T Consensus       211 ~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a  290 (413)
T 3vla_A          211 TLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEA  290 (413)
T ss_dssp             TSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHH
T ss_pred             ceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHH
Confidence             999999987422          269999999999999998764          36899999999999999999999999


Q ss_pred             HHHHhcCCCCccCCCCCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCC
Q 025328          132 IMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAE  211 (254)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~  211 (254)
                      |.+++...+++++.....+..||..+......+...+|+|+|+|+|.  ++.|+|++++|+++...+.+|++++..... 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~--~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~-  367 (413)
T 3vla_A          291 FIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSE--SVVWTITGSNSMVYINDNVVCLGVVDGGSN-  367 (413)
T ss_dssp             HHHHHHHTTCCEECCCTTCSCEEECTTCCEETTEECCCCEEEECSST--TCEEEECHHHHEEEEETTEEEECEEEEESS-
T ss_pred             HHHHhcccCCCcCCCCCCCcceeccCCccccccccCCCcEEEEEcCC--cEEEEeCccceEEEeCCCcEEEEEEecCCC-
Confidence            99887532244443334567899863211111224799999999973  389999999999987667799998865421 


Q ss_pred             CCCceeeccceeeceEEEEeCCCCEEeeecC
Q 025328          212 VGENNIIGEIFMQDKMVIYDNEKQRIGWKPE  242 (254)
Q Consensus       212 ~~~~~iLG~~f~~~~~vvfD~~~~rIGfa~~  242 (254)
                      ....||||++|||++|+|||++++|||||++
T Consensus       368 ~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~  398 (413)
T 3vla_A          368 LRTSIVIGGHQLEDNLVQFDLATSRVGFSGT  398 (413)
T ss_dssp             CSSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             cccceeEehhhhcCeEEEEECCCCEEEEEEe
Confidence            1358999999999999999999999999974
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-26
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-15
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 3e-14
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-13
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 3e-13
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-12
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 3e-12
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 8e-12
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-11
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-11
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-11
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-10
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-10
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 5e-10
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 1e-09
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 5e-09
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-09
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-08
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-08
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-08
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-07
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 8e-07
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 25/262 (9%)

Query: 5   CSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLG 64
                         P  + GV GL    +++ +Q+     + N    C+   G GV   G
Sbjct: 120 VLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFG 179

Query: 65  DGKVP----SSGVAWTPMLQNSAD------LKHYILGPAELLYSGKSCGLKDLTLIFDSG 114
            G VP    +  + +TP++            +  ++G   +     +       ++  + 
Sbjct: 180 GGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALA--TGGVMLSTR 237

Query: 115 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKT------LPICWRGPFKALGQVTEYF 168
             Y      VY+ ++    + L       AP  +         +C+              
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297

Query: 169 KPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGEN----NIIGEIFMQ 224
             + L            +  +  +V   +   C+  +       G+      I+G   M+
Sbjct: 298 PNVQLGL---DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQME 354

Query: 225 DKMVIYDNEKQRIGWKPEDCNT 246
           D ++ +D EK+R+G+      T
Sbjct: 355 DFVLDFDMEKKRLGFSRLPHFT 376
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.98
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.98
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.97
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.97
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.97
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.96
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.96
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.95
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=100.00  E-value=7.8e-37  Score=266.06  Aligned_cols=211  Identities=16%  Similarity=0.327  Sum_probs=170.9

Q ss_pred             ceEEeeccCCCCCCCCCCCCcceEeecCCCCC--------ChHHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCCC--
Q 025328            2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI--------SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV--   68 (254)
Q Consensus         2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~--------s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~~--   68 (254)
                      ++.|||+....        ..+||+|||+...        +++.+|.++++| +++||+|+.+  ..+|.|+|||+|+  
T Consensus       108 ~~~f~~~~~~~--------~~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~g~l~lGg~d~~~  179 (334)
T d1j71a_         108 NQQFADVTTTS--------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAK  179 (334)
T ss_dssp             EEEEEEEEEES--------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTS
T ss_pred             Cceeeeeeeec--------cccCccccccccccccccccchhhHHHHhccccccceEEEEeccCCCCCceEEecccChhh
Confidence            46899988762        4589999997643        478899999999 8999999985  3579999999974  


Q ss_pred             CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCC
Q 025328           69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDK  148 (254)
Q Consensus        69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~  148 (254)
                      +.+++.|+|+...    .+|.+.+++|++++..+.. ...++|||||++++||+++|++|.+.+......        ..
T Consensus       180 ~~g~~~~~~~~~~----~~~~v~l~~i~v~g~~~~~-~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~--------~~  246 (334)
T d1j71a_         180 YTGTLTALPVTSS----VELRVHLGSINFDGTSVST-NADVVLDSGTTITYFSQSTADKFARIVGATWDS--------RN  246 (334)
T ss_dssp             EEEEEEEEECCCS----SSCEEEEEEEEETTEEEEE-EEEEEECTTCSSEEECHHHHHHHHHHHTCEEET--------TT
T ss_pred             cccceeEeeeccc----cceEEeeceEEECCEEecc-cccccccCCCcceeccHHHHHHHHHHhCCEEcC--------CC
Confidence            4688999999764    6899999999999998864 678999999999999999999999888543221        11


Q ss_pred             CCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEE-EEEcCCcCCCCCceeeccceeeceE
Q 025328          149 TLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCL-GILNGSEAEVGENNIIGEIFMQDKM  227 (254)
Q Consensus       149 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~-~~~~~~~~~~~~~~iLG~~f~~~~~  227 (254)
                         .|+..+.  +    +..|.++|+|.+   +++++|||++|++...++..|+ ++...      +.+|||++|||++|
T Consensus       247 ---~~~~~~~--~----~~~p~i~f~f~~---g~~~~i~~~~y~~~~~~~~~C~~~i~~~------~~~ILG~~fl~~~y  308 (334)
T d1j71a_         247 ---EIYRLPS--C----DLSGDAVFNFDQ---GVKITVPLSELILKDSDSSICYFGISRN------DANILGDNFLRRAY  308 (334)
T ss_dssp             ---TEEECSS--S----CCCSEEEEEEST---TCEEEEEGGGGEEECSSSSCEEESEEEC------TTCEECHHHHTTEE
T ss_pred             ---Ceeeccc--c----ccCCCceEEeCC---CEEEEEChHHeEEecCCCCEEEEEecCC------CCcEECHHhhCcEE
Confidence               1332210  1    246999999986   6999999999999877677897 56543      36899999999999


Q ss_pred             EEEeCCCCEEeeecCCCCcccccC
Q 025328          228 VIYDNEKQRIGWKPEDCNTLLSLN  251 (254)
Q Consensus       228 vvfD~~~~rIGfa~~~c~~~~~~~  251 (254)
                      ++||+||+|||||+++|++.+++.
T Consensus       309 ~vfD~~n~~iGfA~~~~~~~~~v~  332 (334)
T d1j71a_         309 IVYDLDDKTISLAQVKYTSSSDIS  332 (334)
T ss_dssp             EEEETTTTEEEEEEECCCSCCCEE
T ss_pred             EEEECCCCEEEEEECCCCCcCCee
Confidence            999999999999999999876653
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure