Citrus Sinensis ID: 025344
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | 2.2.26 [Sep-21-2011] | |||||||
| O27710 | 258 | Phosphosulfolactate synth | yes | no | 0.834 | 0.821 | 0.229 | 1e-07 | |
| Q57703 | 251 | Phosphosulfolactate synth | yes | no | 0.732 | 0.741 | 0.216 | 0.0001 |
| >sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 32/244 (13%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196
+ G F V+ +RDR + D +R L
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL---------------EPDDRVRLVRADLR 164
Query: 197 AGADMIMIDSDDVCKHA------DSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRY 250
AGA M+++++ + ++ ++R D + RL +++ ++EA +FI +
Sbjct: 165 AGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQKSQQVYFILKI 224
Query: 251 GPKV 254
GP V
Sbjct: 225 GPDV 228
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9 |
| >sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=comA PE=1 SV=1 | Back alignment and function description |
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Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------H 212
D+D+ +D I+ L+AGAD ++I+ + K
Sbjct: 140 DKDKQL---------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGK 184
Query: 213 ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254
D++AK + + K +FEA FI ++G V
Sbjct: 185 VKENELDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSV 223
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| 224116330 | 291 | predicted protein [Populus trichocarpa] | 0.992 | 0.865 | 0.770 | 1e-113 | |
| 449454694 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.867 | 0.779 | 1e-112 | |
| 255555077 | 277 | furin, putative [Ricinus communis] gi|22 | 0.980 | 0.898 | 0.756 | 1e-111 | |
| 297804020 | 1745 | hypothetical protein ARALYDRAFT_329472 [ | 0.976 | 0.142 | 0.744 | 1e-110 | |
| 3402751 | 1736 | putative protein [Arabidopsis thaliana] | 0.976 | 0.142 | 0.744 | 1e-110 | |
| 30685384 | 286 | Aldolase-type TIM barrel family protein | 0.976 | 0.867 | 0.744 | 1e-109 | |
| 356524766 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.867 | 0.755 | 1e-108 | |
| 357123468 | 299 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.832 | 0.666 | 1e-100 | |
| 326530436 | 294 | predicted protein [Hordeum vulgare subsp | 0.944 | 0.816 | 0.7 | 3e-99 | |
| 115469570 | 302 | Os06g0682900 [Oryza sativa Japonica Grou | 0.937 | 0.788 | 0.697 | 4e-99 |
| >gi|224116330|ref|XP_002317271.1| predicted protein [Populus trichocarpa] gi|222860336|gb|EEE97883.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/253 (77%), Positives = 220/253 (86%), Gaps = 1/253 (0%)
Query: 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG 61
S YY WKSF+E EDR EKPRRFGVTEMR P YTL S N+L+D+FE+MGQFVDGLKFSG
Sbjct: 4 SSVYYQWKSFEEDEDRPEKPRRFGVTEMRGPQYTLLS-QNMLQDVFETMGQFVDGLKFSG 62
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121
GSHSLMPK FI+EVV AH+HDVYVSTGDWAEHL+ GP+AFKEYVE+CK +GFDTIELN
Sbjct: 63 GSHSLMPKSFIKEVVDMAHKHDVYVSTGDWAEHLLHKGPTAFKEYVEECKSMGFDTIELN 122
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181
VGSL +PEETLLRYVRL+KS GLKAKP+FAV FN+SDIP RAFGAYV PRS+E V
Sbjct: 123 VGSLGVPEETLLRYVRLIKSGGLKAKPQFAVKFNRSDIPIGGHRAFGAYVPPTPRSSELV 182
Query: 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241
EDV+LLI AERCLEAGADMIMID+DD+CK DSLRADI+ KVIGRLGLEKTMFEA+N +
Sbjct: 183 EDVNLLINMAERCLEAGADMIMIDADDICKDVDSLRADIVVKVIGRLGLEKTMFEASNTK 242
Query: 242 TSEWFIRRYGPKV 254
T++WFI+RYGPKV
Sbjct: 243 TADWFIKRYGPKV 255
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454694|ref|XP_004145089.1| PREDICTED: uncharacterized protein LOC101208408 [Cucumis sativus] gi|449473349|ref|XP_004153856.1| PREDICTED: uncharacterized protein LOC101220954 [Cucumis sativus] gi|449488403|ref|XP_004158021.1| PREDICTED: uncharacterized protein LOC101228109 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/249 (77%), Positives = 223/249 (89%), Gaps = 1/249 (0%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
Y WKSFDE EDR EKPRR GVTEMR PHYTLS+ +V+++IFES+GQFVDGLKFSGGSHS
Sbjct: 4 YLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLST-QDVIQEIFESLGQFVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
L+P+ F++EV + AH+HDVYVSTGDWAEHL+R GPS FKEYVE+CK +GFDTIELNVGSL
Sbjct: 63 LLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
++PEETLLRYVRL+K+ GL+AKP+FAV FNKSDIP +RAFGAY+ PRS+E VEDVD
Sbjct: 123 DVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPKPRSSELVEDVD 182
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDV KHA+ LRADIIAK+IGRLGLEKTMFEA+NP+TSEW
Sbjct: 183 LLIRRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLGLEKTMFEASNPQTSEW 242
Query: 246 FIRRYGPKV 254
FI YGPKV
Sbjct: 243 FINHYGPKV 251
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555077|ref|XP_002518576.1| furin, putative [Ricinus communis] gi|223542421|gb|EEF43963.1| furin, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/250 (75%), Positives = 220/250 (88%), Gaps = 1/250 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WK+FDE +DR EKPRRFGVTEMR P Y+L + N+L D+FESMGQFVDGLKFSGGSH
Sbjct: 4 YYQWKTFDEDDDRPEKPRRFGVTEMRGPQYSLLT-QNMLRDVFESMGQFVDGLKFSGGSH 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SLMP+ FI++V+ AHQHD+YVSTGDWAEHL+ GPSAFK+YVE+CK +GFDTIELNVGS
Sbjct: 63 SLMPRSFIKDVIDMAHQHDIYVSTGDWAEHLLHKGPSAFKDYVEECKNMGFDTIELNVGS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
L +PEETLLRYVRL+KSA LKAKP+FA FNKSDIP +RAFGAY+ P+S E +ED+
Sbjct: 123 LGVPEETLLRYVRLIKSADLKAKPQFAAKFNKSDIPIGGNRAFGAYMPPTPQSFELIEDI 182
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIRRAERCL+AGADMIMID+DD+CK A+SLRADIIAKVIGRLGLEKTMFEA+N +T+E
Sbjct: 183 DLLIRRAERCLKAGADMIMIDADDICKDAESLRADIIAKVIGRLGLEKTMFEASNSKTTE 242
Query: 245 WFIRRYGPKV 254
WFI+ YGPKV
Sbjct: 243 WFIKHYGPKV 252
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804020|ref|XP_002869894.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] gi|297315730|gb|EFH46153.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/250 (74%), Positives = 224/250 (89%), Gaps = 2/250 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN S
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ DSLRADIIAKVIGRLG+EKTMFEA++ + +E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYPDSLRADIIAKVIGRLGIEKTMFEASDGKLAE 241
Query: 245 WFIRRYGPKV 254
WFI+RYGP V
Sbjct: 242 WFIKRYGPNV 251
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3402751|emb|CAA20197.1| putative protein [Arabidopsis thaliana] gi|7268928|emb|CAB79131.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/250 (74%), Positives = 223/250 (89%), Gaps = 2/250 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGPKV 254
WFI+RYGP V
Sbjct: 242 WFIKRYGPNV 251
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685384|ref|NP_567623.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|26452567|dbj|BAC43368.1| unknown protein [Arabidopsis thaliana] gi|332659039|gb|AEE84439.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/250 (74%), Positives = 223/250 (89%), Gaps = 2/250 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGPKV 254
WFI+RYGP V
Sbjct: 242 WFIKRYGPNV 251
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524766|ref|XP_003530999.1| PREDICTED: uncharacterized protein LOC100805668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/249 (75%), Positives = 216/249 (86%), Gaps = 1/249 (0%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+ WKSF+E EDR KPR FGVTE++SPH TL S HN+L+DIFESMG +VDGLKFSGGSHS
Sbjct: 4 FRWKSFEENEDRPAKPRHFGVTEIQSPHCTLFS-HNLLQDIFESMGDYVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
+MPK I++++ AHQHDVYVSTGDWAEH+I PS FKEYVE+CKQ+GFDTIELNVGSL
Sbjct: 63 MMPKATIKQIIDMAHQHDVYVSTGDWAEHMISKSPSGFKEYVEECKQLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
EIPEET LR+VRLVKS GLKAKP F V FN+SDIP DRA+GAY+ PRS E VEDV+
Sbjct: 123 EIPEETFLRFVRLVKSGGLKAKPHFQVKFNESDIPKGGDRAYGAYIPPVPRSFELVEDVN 182
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDV KHAD++RADIIAK+IGRLG+EKTMFEA+N R SEW
Sbjct: 183 LLIRRAERCLEAGADMIMIDADDVSKHADNMRADIIAKIIGRLGIEKTMFEASNQRISEW 242
Query: 246 FIRRYGPKV 254
FI++YGPKV
Sbjct: 243 FIKQYGPKV 251
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123468|ref|XP_003563432.1| PREDICTED: uncharacterized protein LOC100846790 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/249 (66%), Positives = 212/249 (85%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+G+ DE +DR EKPRR+GVTEMRSP+Y+ S+H+ L++I +S+G FVDGLKFSGGSHS
Sbjct: 16 HGYGHGDEADDRPEKPRRYGVTEMRSPYYSFRSAHHALQEILDSIGPFVDGLKFSGGSHS 75
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
LM K I E+ AH+HD+YVSTGDWAEHL+R GPS+FK+YV++CK++GFDT+ELN GSL
Sbjct: 76 LMGKELIREITDLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVQECKELGFDTVELNAGSL 135
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
++PEE +LR VRL+K++GL+AKP F+V F+ SDIP+ DRAFGAY +++E VEDVD
Sbjct: 136 KLPEEAILRLVRLIKNSGLRAKPLFSVKFDSSDIPASGDRAFGAYTVPVKQTSERVEDVD 195
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDVC+ ADSLRAD+IAK++GRLGL+KTMFE +N TSEW
Sbjct: 196 LLIRRAERCLEAGADMIMIDADDVCQRADSLRADVIAKIVGRLGLDKTMFETSNANTSEW 255
Query: 246 FIRRYGPKV 254
F++RY P+V
Sbjct: 256 FVKRYSPRV 264
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326530436|dbj|BAJ97644.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 168/240 (70%), Positives = 206/240 (85%)
Query: 15 EDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74
+DR EKPRR+GVTEMRSP Y+ +H+ L++I +S+G FVDGLKFSGGSHSLM K I E
Sbjct: 20 DDRPEKPRRYGVTEMRSPCYSFRPAHHALQEILDSLGPFVDGLKFSGGSHSLMGKELIRE 79
Query: 75 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ AH+HD+YVSTGDWAEHL+R GPS+FK+YVE+CK++GFDTIELN GSL++PEE +LR
Sbjct: 80 ITDLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEECKELGFDTIELNAGSLKLPEEAILR 139
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
VRL+K+ GL+AKP F+V F+ S++P+ DRAFGAY+A RS+E VEDVDLLIRRAERC
Sbjct: 140 LVRLIKNTGLRAKPLFSVKFDSSEMPAAGDRAFGAYIAPVKRSSERVEDVDLLIRRAERC 199
Query: 195 LEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254
LEAGADMIMID+DDVC+ DSLRADIIAKV+GRLGLEKTMFE +N TSEWF++RYGP+V
Sbjct: 200 LEAGADMIMIDADDVCQRTDSLRADIIAKVVGRLGLEKTMFETSNANTSEWFVKRYGPRV 259
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115469570|ref|NP_001058384.1| Os06g0682900 [Oryza sativa Japonica Group] gi|52076646|dbj|BAD45546.1| (2R)-phospho-3-sulfolactate synthase-like [Oryza sativa Japonica Group] gi|52076892|dbj|BAD45905.1| (2R)-phospho-3-sulfolactate synthase-like [Oryza sativa Japonica Group] gi|54639899|gb|AAV36521.1| phosphosulfolactate synthase-related protein [Oryza sativa Japonica Group] gi|113596424|dbj|BAF20298.1| Os06g0682900 [Oryza sativa Japonica Group] gi|222636100|gb|EEE66232.1| hypothetical protein OsJ_22394 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 166/238 (69%), Positives = 203/238 (85%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R EKPRR+GVTEMRSP Y +H+ L++I +S+G FVDGLKF+GGSHSLM K + E+
Sbjct: 27 RPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSLGPFVDGLKFTGGSHSLMGKELVREIT 86
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
AH+HD+YVSTGDWAEHL+R GPS FK+YVE+CK +GFDTIELN GSL++PEE LLR V
Sbjct: 87 DLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEECKALGFDTIELNAGSLKLPEEALLRLV 146
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196
RL+K++GL+AKP F+V F+ SDIP DRAFGAY+ +++E VEDVDLLIRRAERCLE
Sbjct: 147 RLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAYIVPVKQNSERVEDVDLLIRRAERCLE 206
Query: 197 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254
AGADMIMID+DD+C+ ADSLRADI+AK++GRLGLEKTMFEA+NP TSEWF+RRYGP+V
Sbjct: 207 AGADMIMIDADDICQRADSLRADIVAKIVGRLGLEKTMFEASNPNTSEWFVRRYGPRV 264
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Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| TAIR|locus:2141196 | 286 | HSA32 "HEAT-STRESS-ASSOCIATED | 0.976 | 0.867 | 0.744 | 5.4e-102 | |
| UNIPROTKB|Q653W2 | 302 | P0547F09.36 "Phosphosulfolacta | 0.956 | 0.804 | 0.691 | 1.3e-93 | |
| ASPGD|ASPL0000047680 | 342 | AN10197 [Emericella nidulans ( | 0.901 | 0.669 | 0.380 | 2.9e-39 | |
| UNIPROTKB|Q5BDB6 | 1107 | AN1464.2 "Putative uncharacter | 0.901 | 0.206 | 0.380 | 4.7e-38 | |
| UNIPROTKB|Q83AE7 | 290 | CBU_1954 "(2R)-phospho-3-sulfo | 0.862 | 0.755 | 0.302 | 2.2e-25 | |
| TIGR_CMR|CBU_1954 | 290 | CBU_1954 "hypothetical protein | 0.862 | 0.755 | 0.302 | 2.2e-25 |
| TAIR|locus:2141196 HSA32 "HEAT-STRESS-ASSOCIATED 32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 186/250 (74%), Positives = 223/250 (89%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLSQ-NLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGPKV 254
WFI+RYGP V
Sbjct: 242 WFIKRYGPNV 251
|
|
| UNIPROTKB|Q653W2 P0547F09.36 "Phosphosulfolactate synthase-related protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 168/243 (69%), Positives = 206/243 (84%)
Query: 12 DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF 71
D +DR EKPRR+GVTEMRSP Y +H+ L++I +S+G FVDGLKF+GGSHSLM K
Sbjct: 22 DGDDDRPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSLGPFVDGLKFTGGSHSLMGKEL 81
Query: 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET 131
+ E+ AH+HD+YVSTGDWAEHL+R GPS FK+YVE+CK +GFDTIELN GSL++PEE
Sbjct: 82 VREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEECKALGFDTIELNAGSLKLPEEA 141
Query: 132 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191
LLR VRL+K++GL+AKP F+V F+ SDIP DRAFGAY+ +++E VEDVDLLIRRA
Sbjct: 142 LLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAYIVPVKQNSERVEDVDLLIRRA 201
Query: 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251
ERCLEAGADMIMID+DD+C+ ADSLRADI+AK++GRLGLEKTMFEA+NP TSEWF+RRYG
Sbjct: 202 ERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLGLEKTMFEASNPNTSEWFVRRYG 261
Query: 252 PKV 254
P+V
Sbjct: 262 PRV 264
|
|
| ASPGD|ASPL0000047680 AN10197 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 99/260 (38%), Positives = 142/260 (54%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGF------------- 115
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGFVMLNLVPFRVLTL 175
Query: 116 ----DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171
D IEL+ G L IPE+ LR V V S GLKAKP+ + F G
Sbjct: 176 HHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFGA-----------GGDT 224
Query: 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231
+ A + D L+ + L+AG + +MI+S+ + ++ S R D+++K++ L E
Sbjct: 225 SAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPE 284
Query: 232 KTMFEATNPRTSEWFIRRYG 251
+ MFEA +P+ W+IR +G
Sbjct: 285 RVMFEAADPQVYTWYIREFG 304
|
|
| UNIPROTKB|Q5BDB6 AN1464.2 "Putative uncharacterized protein" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 4.7e-38, P = 4.7e-38
Identities = 99/260 (38%), Positives = 142/260 (54%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGF------------- 115
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGFVMLNLVPFRVLTL 175
Query: 116 ----DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171
D IEL+ G L IPE+ LR V V S GLKAKP+ + F G
Sbjct: 176 HHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFGA-----------GGDT 224
Query: 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231
+ A + D L+ + L+AG + +MI+S+ + ++ S R D+++K++ L E
Sbjct: 225 SAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPE 284
Query: 232 KTMFEATNPRTSEWFIRRYG 251
+ MFEA +P+ W+IR +G
Sbjct: 285 RVMFEAADPQVYTWYIREFG 304
|
|
| UNIPROTKB|Q83AE7 CBU_1954 "(2R)-phospho-3-sulfolactate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 73/241 (30%), Positives = 127/241 (52%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195
V+ ++ GLK KP+ +M S + +Y + +S + VD I ER
Sbjct: 140 VKRIQKIGLKPKPEITIM---SGVGGGVKEI--SYQEKLKQS----KTVDQFIEEGERFF 190
Query: 196 EAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-----RTSEWFI 247
EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE + +T +W++
Sbjct: 191 EAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDDEARQTFKWYL 250
Query: 248 R 248
+
Sbjct: 251 K 251
|
|
| TIGR_CMR|CBU_1954 CBU_1954 "hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 73/241 (30%), Positives = 127/241 (52%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195
V+ ++ GLK KP+ +M S + +Y + +S + VD I ER
Sbjct: 140 VKRIQKIGLKPKPEITIM---SGVGGGVKEI--SYQEKLKQS----KTVDQFIEEGERFF 190
Query: 196 EAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-----RTSEWFI 247
EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE + +T +W++
Sbjct: 191 EAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDDEARQTFKWYL 250
Query: 248 R 248
+
Sbjct: 251 K 251
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 254 254 0.00084 114 3 11 22 0.45 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 602 (64 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.86u 0.10s 21.96t Elapsed: 00:00:02
Total cpu time: 21.86u 0.10s 21.96t Elapsed: 00:00:02
Start: Fri May 10 05:06:41 2013 End: Fri May 10 05:06:43 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0091010302 | hypothetical protein (292 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 254 | |||
| pfam02679 | 245 | pfam02679, ComA, (2R)-phospho-3-sulfolactate synth | 5e-81 | |
| COG1809 | 258 | COG1809, COG1809, (2R)-phospho-3-sulfolactate synt | 3e-36 | |
| TIGR03849 | 237 | TIGR03849, arch_ComA, phosphosulfolactate synthase | 6e-15 | |
| PLN02649 | 560 | PLN02649, PLN02649, glucose-6-phosphate isomerase | 0.004 |
| >gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA) | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 5e-81
Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 31/245 (12%)
Query: 15 EDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74
+R EKPRR G+T + LED+ ES G ++D LKF G+ +LMP+ ++E
Sbjct: 4 PERPEKPRRTGLTMVLDKGLGPRF----LEDLLESAGDYIDFLKFGWGTSALMPEDILKE 59
Query: 75 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ AH+H VYV TG + + F EY+ +CK++GFD IE++ G++E+PEE LR
Sbjct: 60 KIDLAHEHGVYVYTGGTLFEIAIS-QGKFDEYLRECKELGFDAIEISDGTIELPEEERLR 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
+R K AG K + V + + D LI + ER
Sbjct: 119 LIRKAKKAGFKVLSE---------------------VGKKDPELDSSLTPDELIEQIERD 157
Query: 195 LEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRR 249
LEAGAD ++I++ + +R D++ +++ RLGLEK +FEA + WFI+R
Sbjct: 158 LEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAPQKKQQVWFIKR 217
Query: 250 YGPKV 254
+GP V
Sbjct: 218 FGPNV 222
|
In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyzes the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyzes the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalyzed reaction is analogous to those reactions catalyzed by beta-elimination enzymes that proceed through an enolate intermediate. Length = 245 |
| >gnl|CDD|224722 COG1809, COG1809, (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-36
Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 33/253 (13%)
Query: 9 KSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM 67
+F+ R EKPR FG+T + +ED+ + G +VD +KF G+ SL+
Sbjct: 2 NAFEFLPPARPEKPRTFGMTVVLDKGLGPRF----VEDVLKVAGDYVDFVKFGWGTSSLI 57
Query: 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127
K ++E + ++D+YV G I EY+ + K++GF+ IE++ G++ +
Sbjct: 58 DKDQVKEKIDMYKENDIYVFPGG-TLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPM 116
Query: 128 PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187
E R + G + P + D A D
Sbjct: 117 STEEKCRLIERAVDEGFMVLSEVG-----KKDP-ESDSA---------------LSPDDR 155
Query: 188 IRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241
++ ++AGA+ ++ ++ + + + +R + +I LG+ + +FEA
Sbjct: 156 VKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQKS 215
Query: 242 TSEWFIRRYGPKV 254
WFI + GP+V
Sbjct: 216 QQVWFILKIGPEV 228
|
Length = 258 |
| >gnl|CDD|163561 TIGR03849, arch_ComA, phosphosulfolactate synthase | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-15
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 44 EDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSA 102
ED + G ++ +KF G+ +L+ + ++E ++ + + V G E G
Sbjct: 15 EDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--K 72
Query: 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
F EY+ +C ++GF+ +E++ GS+EI E + K G F V+ S++
Sbjct: 73 FDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNG------FMVL---SEVGKK 123
Query: 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH------ADSL 216
D I+ + LEAGAD ++I+ + K+ ++
Sbjct: 124 SPEKDSEL------------TPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNV 171
Query: 217 RADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254
+ D + + + + K +FEA FI ++GP V
Sbjct: 172 KEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDV 209
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This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679 [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Methanogenesis]. Length = 237 |
| >gnl|CDD|215351 PLN02649, PLN02649, glucose-6-phosphate isomerase | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
FD I L+ + +ET+ L ++A L K + MF+ I S DRA RA
Sbjct: 46 FDGIYLDYSRQRVTDETMELLFPLAEAANLFEKIE--AMFSGEIINSTEDRAVLHVALRA 103
Query: 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV 209
PR + D ++ L D I S+DV
Sbjct: 104 PRLAPILVDGKNVVPEVWEVL----DKIKAFSEDV 134
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Length = 560 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 100.0 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 100.0 | |
| COG1809 | 258 | (2R)-phospho-3-sulfolactate synthase (PSL synthase | 100.0 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.54 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.38 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.23 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.1 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 97.08 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.02 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 97.02 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 97.0 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.97 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.94 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.88 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 96.79 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.71 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.65 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.63 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 96.51 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 96.48 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.44 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 96.43 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 96.39 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 96.36 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 96.33 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 96.26 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.23 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 96.21 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 96.2 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 96.18 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 96.17 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 96.15 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 96.13 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 96.1 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.92 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 95.88 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 95.87 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 95.71 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.69 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 95.67 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 95.63 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.61 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.57 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 95.54 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 95.53 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 95.52 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 95.51 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 95.49 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 95.43 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 95.36 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 95.32 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 95.3 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.3 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 95.26 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.22 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.21 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 95.12 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 95.1 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.03 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.03 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 95.02 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 94.89 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 94.84 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 94.83 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.67 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 94.65 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.64 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 94.62 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 94.53 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.5 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 94.46 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.44 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 94.36 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 94.35 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.34 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 94.31 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 94.15 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 94.14 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.14 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 94.08 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 94.01 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 93.99 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 93.96 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.96 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 93.93 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 93.92 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 93.9 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 93.89 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 93.73 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.69 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 93.68 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 93.61 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 93.59 | |
| PRK07094 | 323 | biotin synthase; Provisional | 93.55 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.54 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 93.52 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.37 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 93.36 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 93.34 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 93.26 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 93.23 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 93.2 | |
| cd06547 | 339 | GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG | 93.18 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.94 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 92.89 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 92.87 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 92.86 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 92.82 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 92.79 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 92.77 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 92.66 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 92.63 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 92.6 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.56 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 92.43 | |
| COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carboh | 92.42 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 92.33 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 92.31 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 92.28 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 92.26 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 92.21 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 92.2 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.19 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 92.05 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 92.04 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 91.97 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 91.97 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.91 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 91.85 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 91.81 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 91.8 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 91.77 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 91.77 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 91.63 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 91.62 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 91.62 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 91.53 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 91.51 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 91.51 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 91.5 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 91.49 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 91.37 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 91.33 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 91.33 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.29 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 91.23 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 91.23 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 91.17 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 91.13 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 91.11 | |
| PRK10812 | 265 | putative DNAse; Provisional | 91.04 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 91.03 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 91.03 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.99 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 90.9 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.79 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 90.77 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 90.73 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 90.58 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 90.51 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 90.46 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 90.46 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 90.4 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 90.35 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 90.28 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 90.11 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 89.97 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 89.96 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 89.91 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 89.81 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 89.77 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 89.75 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 89.7 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 89.58 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 89.5 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 89.5 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 89.49 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 89.47 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 89.45 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 89.43 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 89.42 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 89.35 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 89.22 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 89.21 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 89.19 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 89.07 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 88.77 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.72 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 88.66 | |
| TIGR03581 | 236 | EF_0839 conserved hypothetical protein EF_0839/AHA | 88.59 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 88.44 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 88.43 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 88.4 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 88.31 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 88.19 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 88.15 | |
| PLN02591 | 250 | tryptophan synthase | 88.1 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.08 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 88.03 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 87.78 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 87.71 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 87.41 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 87.34 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 87.33 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 87.14 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 86.93 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 86.9 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 86.81 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 86.77 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 86.61 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 86.61 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 86.53 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 86.53 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 86.33 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 85.93 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 85.93 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 85.84 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 85.7 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 85.7 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 85.69 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 85.5 | |
| PRK08508 | 279 | biotin synthase; Provisional | 85.49 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 85.39 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 85.21 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 85.1 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 85.08 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 85.01 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 84.87 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 84.86 | |
| PRK15108 | 345 | biotin synthase; Provisional | 84.84 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 84.83 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 84.64 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 84.61 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 84.51 | |
| PRK15452 | 443 | putative protease; Provisional | 84.41 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 84.32 | |
| smart00481 | 67 | POLIIIAc DNA polymerase alpha chain like domain. D | 84.06 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 84.03 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 84.0 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 83.91 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 83.84 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 83.59 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 83.47 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 83.46 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 83.45 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 83.41 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 83.25 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 82.95 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 82.8 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 82.8 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.77 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 82.7 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 82.69 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 82.52 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 82.52 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 82.49 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 82.49 | |
| PF01301 | 319 | Glyco_hydro_35: Glycosyl hydrolases family 35; Int | 82.45 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 82.43 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 82.3 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 82.26 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 82.21 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 82.19 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 82.11 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 82.05 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 81.93 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 81.92 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 81.91 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 81.88 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 81.87 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 81.86 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 81.81 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 81.78 | |
| PRK10425 | 258 | DNase TatD; Provisional | 81.77 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 81.73 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 81.49 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 81.45 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 81.37 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 81.33 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 81.28 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 81.24 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 81.16 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 81.07 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 81.07 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 81.05 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 80.97 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 80.86 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 80.77 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 80.57 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 80.53 | |
| cd02874 | 313 | GH18_CFLE_spore_hydrolase Cortical fragment-lytic | 80.47 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 80.39 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 80.39 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.39 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 80.36 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 80.34 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 80.31 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 80.28 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 80.27 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 80.16 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 80.04 |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-84 Score=581.08 Aligned_cols=215 Identities=40% Similarity=0.711 Sum_probs=178.2
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cH
Q 025344 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (254)
Q Consensus 13 ~l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl 91 (254)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4799999999999999999997 889999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.++.
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~------------ 142 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDF------------ 142 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHT------------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcc------------
Confidence 99999999 9999999999999999999999999999999999999999999999999998654221
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHH
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWF 246 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~ 246 (254)
..|+++||+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+||
T Consensus 143 ---------~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~ 213 (244)
T PF02679_consen 143 ---------SLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWF 213 (244)
T ss_dssp ---------T--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHH
Confidence 225788899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhCCCC
Q 025344 247 IRRYGPKV 254 (254)
Q Consensus 247 I~~~Gp~V 254 (254)
|++|||||
T Consensus 214 I~~~G~~V 221 (244)
T PF02679_consen 214 IKRFGPNV 221 (244)
T ss_dssp HHHH-TT-
T ss_pred HHHhCCCc
Confidence 99999998
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=536.33 Aligned_cols=202 Identities=23% Similarity=0.421 Sum_probs=192.8
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 025344 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (254)
Q Consensus 26 lT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~ 104 (254)
+|||+|||| |+++++|+|++||+|||++||||||++|||+++|++||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 799999998 778999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+|+++||+|||++|||||||++||+++|+++|++++++||+|+||||+|++.. +. ..++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~ 133 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTP 133 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCH
Confidence 99999999999999999999999999999999999999999999999997521 11 1258
Q ss_pred HHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCC
Q 025344 185 DLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~I~~~Gp~V 254 (254)
+++|+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||
T Consensus 134 ~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~V 209 (237)
T TIGR03849 134 DDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDV 209 (237)
T ss_pred HHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCc
Confidence 99999999999999999999995 89999999999999999999999999999999999999999999998
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=501.82 Aligned_cols=220 Identities=25% Similarity=0.479 Sum_probs=207.6
Q ss_pred cccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee
Q 025344 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (254)
Q Consensus 8 ~~~f~~-l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v 86 (254)
++.|.- .|.|+.|||.+|+|+|+|||| |++.++|+|++||+|||++||||||++|.+++++++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 356664 467999999999999999998 778999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 025344 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (254)
Q Consensus 87 ~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~ 165 (254)
||| |+||+++.|+ ++++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+. .|+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPE------SDS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcc------hhh
Confidence 995 7999999999 9999999999999999999999999999999999999999999999999999762 232
Q ss_pred ccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
. + +++++++.+..|++|||++||+||| |||++.|+||++.++.|++++|++|+|||||+
T Consensus 149 ~----l-----------~~~d~~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~ 213 (258)
T COG1809 149 A----L-----------SPDDRVKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQ 213 (258)
T ss_pred h----c-----------ChHHHHHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCCchheeeecCC
Confidence 2 2 4888899999999999999999998 88999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCC
Q 025344 240 PRTSEWFIRRYGPKV 254 (254)
Q Consensus 240 k~qQ~~~I~~~Gp~V 254 (254)
|.||+|||++|||+|
T Consensus 214 k~qq~~fI~k~Gpev 228 (258)
T COG1809 214 KSQQVWFILKIGPEV 228 (258)
T ss_pred cchhhhHHHHhCCcC
Confidence 999999999999997
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=61.17 Aligned_cols=167 Identities=15% Similarity=0.145 Sum_probs=124.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+++++.||. ...+|+-.....-||.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~------~~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI------GTVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc------ccHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677788886 2357776667778999998864 445567999999999999877653 233334445577
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.+-..+|.- +-.+
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H--------------------------~Hnn 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFH--------------------------GHNN 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEE--------------------------eCCC
Confidence 888888999999999999999999999999999999873 2112234441 1123
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+......++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 lGla~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 LGLGVANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred cchHHHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 44557888888999999 67886 88889999999988777776653
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0028 Score=60.00 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=124.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+++++.||. ...+|+=.....-||.+-++.. ....+.+++-++.+|+.|..++. .++.+....++.+
T Consensus 77 ~~~~~ll~pg~------~~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~--~l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI------GTVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVG--FLMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc------cCHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEE--EEEcccCCCHHHH
Confidence 44788888886 2346665555667999998864 44556799999999999987664 2233334555678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
-++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +.+-.++|.- +-.+
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H--------------------------~Hnn 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFH--------------------------AHHN 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEE--------------------------eCCC
Confidence 888899999999999999999999999999999999873 2211234441 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+-.....++|||++ |++. |+=...||..++.+-..++..|.
T Consensus 199 lGla~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 LSLAVANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred CchHHHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 444577888889999998 6775 88889999999998888877653
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0051 Score=56.40 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=117.6
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 025344 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 32 kG~~~~~g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~ 109 (254)
+|+... +-+..++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 455443 344567777777666 8999998766654 55999999999999876541 11 11112234567888889
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +.+ .+++- .+. |...-..
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~--~l~~H-~Hn-------------------------d~GlA~a 208 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VGL--PIHLH-THD-------------------------TSGLAVA 208 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CCC--eEEEE-ecC-------------------------CCChHHH
Confidence 999999999999999999999999999999984 111 23331 021 2344477
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.+...++|||++|=.=--|+=+..||..++.+-..+...+.
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~ 249 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGR 249 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCC
Confidence 78888999999754444588888999999988887776654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=52.95 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=119.6
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.-++++..++. ...+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- +.+..-.++.+
T Consensus 75 ~~~~~~~~~~~------~~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI------GTVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc------cCHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34556666664 2346665556667999888765543 3468999999999998776531 22333445578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ ..++.- +-.|
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H--------------------------~Hn~ 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFH--------------------------GHNN 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEE--------------------------ecCC
Confidence 888999999999999999999999999999999999884 111 123331 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+..+...++|||++ |++. |+=+..||..++.+-..++..+.
T Consensus 196 ~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g~ 242 (263)
T cd07943 196 LGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMGI 242 (263)
T ss_pred cchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcCC
Confidence 445578888889999996 6776 88888999999988777766553
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0086 Score=53.76 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=67.8
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~s~v~~ 161 (254)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++...+-+.+++.|+++.+-. +.-.+. .+++
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~~ 88 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLGS 88 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCCC
Confidence 6789999765 479999999999999999998543 24477788888888999999875421 110000 1111
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.|+. ......+.+.+.++..-+.|+.+|.+-+.
T Consensus 89 -~~~~------------~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 89 -EDDA------------VRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred -CCHH------------HHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 1110 00112445566677777899999998654
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0087 Score=54.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=111.6
Q ss_pred HHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 025344 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+|+-......+|.+.+...+|-.+.. +.+++-++.++++|..|+.+- |.+-...++.+.++++.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877765432 346788999999999887553 23333445578888888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
.|.+.|-|.|-+-.+.+++-.++|+.+++. +.+ +++.-+ +. |...-...+-
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~--~l~~H~-Hn-------------------------~~Gla~An~l 201 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TDL--PLEFHA-HN-------------------------DLGLATANTL 201 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHH
Confidence 999999999999999999999999999874 222 244411 21 2334467778
Q ss_pred HHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc-CC
Q 025344 193 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL-GL 230 (254)
Q Consensus 193 ~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l-~~ 230 (254)
..+++||++ |++. |+=+..||..++.+-..++.. |.
T Consensus 202 aAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~ 240 (259)
T cd07939 202 AAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHLYGR 240 (259)
T ss_pred HHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHhcCC
Confidence 889999986 5886 777999999999887777655 54
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0089 Score=56.44 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=92.0
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|+.+-||+||..+.+.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 244444444443 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.|+.+++.||..+ ..+-. +. | -++.+.+.+.++..++.|++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------P-------gqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------P-------LDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------C-------CCCHHHHHHHHHHHHhcCCC
Confidence 345666788999999998632 22222 11 1 12578889999999999999
Q ss_pred EEEEec
Q 025344 201 MIMIDS 206 (254)
Q Consensus 201 ~ViiEa 206 (254)
.|-+-.
T Consensus 181 ~is~y~ 186 (350)
T PRK08446 181 HLSAYS 186 (350)
T ss_pred EEEecc
Confidence 886543
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0066 Score=57.81 Aligned_cols=121 Identities=17% Similarity=0.368 Sum_probs=89.4
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
..|+-+-||+||..+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133333355665 78999999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. +.-.+ -.+. + -+|.+.+.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl--P---------------------gqt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL--P---------------------TQSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC--C---------------------CCCHHHHHHHHHHHHccCC
Confidence 3455666788899999986 32222 1111 1 1258889999999999999
Q ss_pred cEEEE
Q 025344 200 DMIMI 204 (254)
Q Consensus 200 ~~Vii 204 (254)
+.|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.032 Score=49.43 Aligned_cols=141 Identities=19% Similarity=0.246 Sum_probs=98.4
Q ss_pred HHHHhhcccccEEeecCcccc----cCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 45 DIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 45 DlLe~ag~yID~lKfg~GT~~----l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
+.|..+| ||.+=+|++.+. +++. ..+.++.+++.+ +.+. ++..+ . .+.++.+++.|++.|
T Consensus 26 ~~L~~~G--V~~IEvg~~~~~~~~p~~~~--~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~i 91 (265)
T cd03174 26 EALDEAG--VDSIEVGSGASPKAVPQMED--DWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDEV 91 (265)
T ss_pred HHHHHcC--CCEEEeccCcCccccccCCC--HHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCEE
Confidence 3444555 999999999986 4443 556666666665 4442 11122 1 677889999999999
Q ss_pred EecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-|+...-+. ..+.-.+.|+.+++.|+.+..-+--- . . +..++++
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~--~-~---------------------~~~~~~~ 147 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA--F-G---------------------CKTDPEY 147 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--c-C---------------------CCCCHHH
Confidence 999876631 34556688999999998644322110 0 0 0125889
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.++...++||+.|. ++|..|...++.+.++++.+
T Consensus 148 l~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~l 184 (265)
T cd03174 148 VLEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHHH
Confidence 99999999999999887 67888888888888887654
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0047 Score=54.76 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=111.5
Q ss_pred hHHHHHHHhhcccccEEeecCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYV 107 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~-----------~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~--qg~~~~~~yl 107 (254)
..++.+.+. | +|.+-+...++-.+ .-+.+.+-++.++++|+.+.... |.+.. .+++.+.+++
T Consensus 78 ~~i~~a~~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERALEA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVA 152 (265)
T ss_pred hhHHHHHhC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHH
Confidence 344444443 2 78888887766211 12348889999999999776531 22222 5566899999
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+.++|.+.|-+.|-+-.+.+++-.++|+.+++.-=. ..++. |+-.|...-
T Consensus 153 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~--------------------------H~Hn~~gla 204 (265)
T cd03174 153 KALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGL--------------------------HTHNTLGLA 204 (265)
T ss_pred HHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEE--------------------------EeCCCCChH
Confidence 99999999999999999999999999999999984211 12332 112234455
Q ss_pred HHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccC
Q 025344 188 IRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+..+-..++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 205 ~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 205 VANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred HHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHHHhcC
Confidence 88888899999977 5886 8889999999999888887665
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=54.01 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=120.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 44555556652 24567777777889999999877644 55899999999999987754 111222455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++++.+.+.|.+.|-|.|-+-.+.+++-.++++.++++ +..-..++. |+-.|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~--------------------------H~Hn~ 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGF--------------------------HAHNN 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEE--------------------------EeCCC
Confidence 899999999999999999999999999999999999873 110011222 22224
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
...-+..+...++|||+. |++. |+=...||..++.+-..++.
T Consensus 194 ~Gla~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 194 LQLALANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred ccHHHHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHHH
Confidence 556688888899999975 6775 88889999999987766654
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=55.11 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=90.3
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (254)
.-|+-+-||+||..+++.+.|++.++.++++ ++.. . .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4322 1 133332234444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
..+.++-.+.++.+++.||. |..-+=. +. + -++.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl--P---------------------gqt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT--P---------------------GESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC--C---------------------CCCHHHHHHHHHHHHhcC
Confidence 24566677889999999987 4333222 11 0 125788899999999999
Q ss_pred CcEEEE
Q 025344 199 ADMIMI 204 (254)
Q Consensus 199 A~~Vii 204 (254)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 988743
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=51.77 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=105.9
Q ss_pred hHHHHHHH-hhcccccEEeecCcccccCC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~~l~~-----------~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..++..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23345677777776665221 2458888999999999887653 2222334457888999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-|.|..-.+++++-.++|+.+++.--. .+++.- .+. |...-+
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H-~Hn-------------------------d~Gla~ 196 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFH-AHN-------------------------DLGLAV 196 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEE-EBB-------------------------TTS-HH
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEE-ecC-------------------------Cccchh
Confidence 9999999999999999999999999999999995332 234442 121 233447
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l 228 (254)
..+...++|||++| ++- |+=+..||...+.+-..++..
T Consensus 197 An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 197 ANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp HHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 78888999999994 665 888999999998887666544
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.063 Score=48.70 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=94.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEee------------cCcccccCChhHHHHHHHHHHhCCceecC---CcH
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDW 91 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKf------------g~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl 91 (254)
..+..-+. +.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+- -++
T Consensus 69 ~vivnv~~---~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRF---VDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEec---CCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 44444443 1456666776667777777665 67778899999999999999988887663 122
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
......++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++. +..+|=+|. . .+ .
T Consensus 146 -------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-gI-----------~ 201 (231)
T TIGR00736 146 -------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-SI-----------D 201 (231)
T ss_pred -------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-Cc-----------C
Confidence 111345788889999999999975443222234 4889998884 111343443 1 11 1
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~ 212 (254)
| .+.+.+.|++||+.||| +|++..+
T Consensus 202 -----------s----~eda~e~l~~GAd~Vmv-gR~~l~~ 226 (231)
T TIGR00736 202 -----------D----IESAKEMLKAGADFVSV-ARAILKG 226 (231)
T ss_pred -----------C----HHHHHHHHHhCCCeEEE-cHhhccC
Confidence 2 56677778899999998 5566544
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.036 Score=50.81 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=97.0
Q ss_pred HHHHHhhcccccEEeecCccc--------ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHc
Q 025344 44 EDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GT~--------~l~~~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~l 113 (254)
-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.-+. .+-.+-.++.++.+.+.
T Consensus 27 a~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~-~~p~~~~~~di~~~~~~ 103 (275)
T cd07937 27 AEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYR-HYPDDVVELFVEKAAKN 103 (275)
T ss_pred HHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCcc-CCCcHHHHHHHHHHHHc
Confidence 44667777 99999999874 333434444333332221121110 10 00000 01111378899999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + ..|++.+.+.++.
T Consensus 104 g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------------~~~~~~~~~~~~~ 157 (275)
T cd07937 104 GIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------------VHTLEYYVKLAKE 157 (275)
T ss_pred CCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------------CCCHHHHHHHHHH
Confidence 99999998766554 4556799999999987653 4421110 0 0158899999999
Q ss_pred HHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 194 CLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 194 dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-.++||+.|- +.|..|...++.+.++++.+
T Consensus 158 ~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 158 LEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 9999999874 68999999999888888654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=54.49 Aligned_cols=125 Identities=14% Similarity=0.233 Sum_probs=91.0
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
.-|+-+=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -.+.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998751 11112 24444334333 358899999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.|+.+++.||..++ +....+. + + ++.+.+.+.++..++.|.+
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl--p---g------------------qt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL--P---D------------------QSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhcCCC
Confidence 3566777889999999997532 2332221 1 1 2588899999999999999
Q ss_pred EEE
Q 025344 201 MIM 203 (254)
Q Consensus 201 ~Vi 203 (254)
.|-
T Consensus 190 ~is 192 (378)
T PRK05660 190 HLS 192 (378)
T ss_pred eEE
Confidence 884
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.026 Score=53.29 Aligned_cols=126 Identities=14% Similarity=0.241 Sum_probs=90.3
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
.-|+.+=||+||..+.+.+.|.+.++..+++- .+.++ .|+.+.-+|+.+ ++.++.++++|++.|.|+--|.+
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l 126 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKL 126 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHH
Confidence 34889999999999999999999999987641 11122 344443344443 58899999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. +-..+ ..+. + -++.+++.+.++..++.|+
T Consensus 127 ~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl--P---------------------gqt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 127 LFLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL--P---------------------LQTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC--C---------------------CCCHHHHHHHHHHHHccCC
Confidence 4667778899999999986 22221 1111 0 1147888999999999999
Q ss_pred cEEEEe
Q 025344 200 DMIMID 205 (254)
Q Consensus 200 ~~ViiE 205 (254)
+.|-+=
T Consensus 182 ~~is~y 187 (360)
T TIGR00539 182 NHLSAY 187 (360)
T ss_pred CEEEee
Confidence 988553
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.23 Score=42.73 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=73.0
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gt-l~E~a~~qg~~~~~~y-l~~~k~lGF 115 (254)
.+.....+.+..++.||++|+|+ +...+.. ++..-++.+.| +..+.-++ ++ ++. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 56677788888899999999963 3343332 32222233333 33333232 22 211 34 677888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHH
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~d 194 (254)
++|=+.--+ +...-.++++.++++|+++..++ +.. ...+.++..
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~~--------------------------------t~~~~~~~~ 122 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINVK--------------------------------DKVKRAKEL 122 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCCC--------------------------------ChHHHHHHH
Confidence 999655322 33455789999999988877653 321 114555556
Q ss_pred HHcCCcEEEEe
Q 025344 195 LEAGADMIMID 205 (254)
Q Consensus 195 LeAGA~~ViiE 205 (254)
++.|+++|.+.
T Consensus 123 ~~~g~d~v~~~ 133 (206)
T TIGR03128 123 KELGADYIGVH 133 (206)
T ss_pred HHcCCCEEEEc
Confidence 77788988875
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.091 Score=46.89 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=81.6
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCC
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPS 161 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~ 161 (254)
|.|+.++.++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-.. .-.+++
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~ 83 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFGS 83 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCCC
Confidence 4566666542 379999999999999999997322 245667788888899999998653 221000 001110
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccc-ccCC-CccH------HHHHHHHhccCCCce
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 233 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~-d~~g-~~r~------d~i~~ii~~l~~~kl 233 (254)
.|+. ......+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 84 -~d~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 84 -RDPA------------TRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred -CCHH------------HHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 1110 00112455566666677889999988432111 1111 1111 222333444454 56
Q ss_pred EEec------CCchhHHHHHHHhC
Q 025344 234 MFEA------TNPRTSEWFIRRYG 251 (254)
Q Consensus 234 ifEA------P~k~qQ~~~I~~~G 251 (254)
.+|. +...+-..|++..+
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~ 173 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEID 173 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcC
Confidence 6766 23345566777665
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.05 Score=51.75 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=92.9
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (254)
..++-+=||+||..+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588999999999999999999999999997 2 223 245554555554 7999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
.-+.++-.+.|+.+++.||. +-..+ -.+. | .++.+++.+.++...+.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------P-------gqt~e~~~~tl~~~~~l~p 184 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------P-------ILKLKDLDEVFNFILKHKI 184 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------C-------CCCHHHHHHHHHHHHhcCC
Confidence 34556777899999999986 22222 1111 1 1247788888998899999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|-+-.
T Consensus 185 ~~is~y~ 191 (353)
T PRK05904 185 NHISFYS 191 (353)
T ss_pred CEEEEEe
Confidence 9886654
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.046 Score=49.63 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=110.1
Q ss_pred hHHHHHHHhhc-ccccEEeecCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~GT~~l~-----------~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 73 ~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~ 150 (268)
T cd07940 73 KDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVE 150 (268)
T ss_pred hhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHH
Confidence 34444444322 2289988877655442 11447788999999999887542 2222234457788889
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++. |+-.|...-+
T Consensus 151 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~--------------------------H~Hn~~GlA~ 204 (268)
T cd07940 151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISV--------------------------HCHNDLGLAV 204 (268)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEE--------------------------EecCCcchHH
Confidence 99999999999999999999999999999999841000011222 1112345557
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 205 An~laAi~aG~~~--iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 205 ANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHhCCCE--EEEEeeccccccccccHHHHHHHHHhcc
Confidence 7888889999996 4775 7778899999998877776554
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.03 Score=54.69 Aligned_cols=127 Identities=17% Similarity=0.358 Sum_probs=89.7
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|.-+-||+||..+++.+.|.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 12222222323 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||+.. -+...++. + + ++.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl--P---g------------------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL--P---K------------------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 455666789999999998621 12222221 1 1 15888899999999999999
Q ss_pred EEEec
Q 025344 202 IMIDS 206 (254)
Q Consensus 202 ViiEa 206 (254)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86654
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.065 Score=52.39 Aligned_cols=125 Identities=19% Similarity=0.367 Sum_probs=90.9
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
-|.-+=||+||..++|.+.|++.++.++++ ++ .++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 23322223333 378999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. |-..+ ..+. + + ++.+.+.+.++..++.|.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--i~Gl--P---g------------------qt~e~~~~tl~~~~~l~p 233 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESINFDL--IYGL--P---H------------------QTVESFRETLDKVIALSP 233 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeE--EEeC--C---C------------------CCHHHHHHHHHHHHhcCC
Confidence 5677778999999999986 22222 1111 0 1 158889999999999999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|-+-+
T Consensus 234 ~~i~~y~ 240 (453)
T PRK13347 234 DRIAVFG 240 (453)
T ss_pred CEEEEec
Confidence 9997764
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.08 Score=50.82 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=112.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 44444443 47888888887776432 34778889999999988765 4555555666888999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+.|.+.|-+.|-.-.+.+.+-.++|+.+++.= .+ .++.- +-.|...-+-.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~--~l~~H--------------------------~Hnd~GlA~AN 205 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DI--PIEVH--------------------------CHNDFGMATAN 205 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC--eEEEE--------------------------ecCCcCHHHHH
Confidence 999999999999999999999999999998742 22 23331 11234445777
Q ss_pred HHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHh-ccCC
Q 025344 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG-RLGL 230 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~-~l~~ 230 (254)
+...++|||++| ++- |+=+..||...+.+-..+. ..+.
T Consensus 206 ~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~~~~g~ 246 (378)
T PRK11858 206 ALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALKYLYGI 246 (378)
T ss_pred HHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHHHHhCC
Confidence 888899999975 664 8888999999887766665 3443
|
|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=46.76 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=83.6
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~~~ 163 (254)
|+.++.++ -.+.+-++.++++||++|||+-+. .+.+.+++..+-+.+++.|+++.+ +..... ...+++ .
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLGS-K 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCCC-c
Confidence 44555532 368888999999999999997443 456788888999999999998763 111000 001111 1
Q ss_pred ccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccc-ccC-CCccHH------HHHHHHhccCCCceEE
Q 025344 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 235 (254)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~-d~~-g~~r~d------~i~~ii~~l~~~klif 235 (254)
|+. ......+.+-+.++..-+.||..|.+-+.... ... .+.... .+.++++..|+ +|.+
T Consensus 85 ~~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA------------VRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 111 00112455667777777899999998765332 111 111111 22334445555 5778
Q ss_pred ec---C---CchhHHHHHHHhC
Q 025344 236 EA---T---NPRTSEWFIRRYG 251 (254)
Q Consensus 236 EA---P---~k~qQ~~~I~~~G 251 (254)
|. | ...+-..+|+..|
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~ 173 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLN 173 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcC
Confidence 85 1 2334456677766
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.047 Score=52.01 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=109.3
Q ss_pred hcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
...-+|.+-+...+|-++-. +.+++-|+.++++|..++.+ +|.+-...++.+.++++.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888877754322 22558899999999988765 455555566688889999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-+.|-.--+.+.+-.++|+.+++. +.+ .+++-+ +. |...-+-.+...++||
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aG 210 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAG 210 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhC
Confidence 999999999999999999999874 122 233310 21 3344477888889999
Q ss_pred CcEEEEecc--cccccCCCccHHHHHHHH-hccCCC
Q 025344 199 ADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGLE 231 (254)
Q Consensus 199 A~~ViiEar--gi~d~~g~~r~d~i~~ii-~~l~~~ 231 (254)
|++| ++- |+=+..||...+.+-..+ ...|.+
T Consensus 211 a~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 211 ATHV--NTTVNGLGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred CCEE--EEEeeccccccccCCHHHHHHHHHHhcCCC
Confidence 9964 765 888999999988877666 445543
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.033 Score=53.69 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=91.0
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (254)
.-|+-+=||+||..++|.+.|++.++.++++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244433344443 5899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++-.+.++.+++.||..+. +....+. + + +|.+.+.+.++..++.+.+
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl--P---g------------------qt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL--P---H------------------QTLEDWQASLEAAIALNPT 197 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHcCCCC
Confidence 45667778889999999987321 2222221 1 1 2578889999999999999
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 198 ~is~ 201 (400)
T PRK07379 198 HLSC 201 (400)
T ss_pred EEEE
Confidence 8843
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.043 Score=53.58 Aligned_cols=127 Identities=18% Similarity=0.329 Sum_probs=90.5
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|+.+=||+||..+++.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998861 11222 12222222333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||..+ -+...++. + + ++.+++.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl--P---g------------------qt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL--P---K------------------QTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 566777899999999998421 12222221 0 1 15788899999999999998
Q ss_pred EEEec
Q 025344 202 IMIDS 206 (254)
Q Consensus 202 ViiEa 206 (254)
|-+-.
T Consensus 235 i~~y~ 239 (453)
T PRK09249 235 LAVFN 239 (453)
T ss_pred EEEcc
Confidence 87654
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.062 Score=49.85 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=104.6
Q ss_pred ccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 52 QFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
.-+|.+-+...+|-.+... .+++-|+.++++|..+. .|..++.. -.++.+.++.+.+.++|
T Consensus 91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALG 168 (287)
T ss_pred cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcC
Confidence 3567777777666443221 37789999999999774 23333332 23457888899999999
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHH
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~d 194 (254)
.+.|-|.|-.--+.+.+-.++|+.+++. +.. ..+++- .+. |...-+..+-..
T Consensus 169 ~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H-~Hn-------------------------~~Gla~AN~laA 220 (287)
T PRK05692 169 CYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGH-FHD-------------------------TYGQALANIYAS 220 (287)
T ss_pred CcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEE-ecC-------------------------CCCcHHHHHHHH
Confidence 9999999999999999999999999974 210 123331 121 233447778888
Q ss_pred HHcCCcEEEEecc--cccc------cCCCccHHHHHHHHhccCCC
Q 025344 195 LEAGADMIMIDSD--DVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 195 LeAGA~~ViiEar--gi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
++|||++ +++. |+=. ..||.-++.+-..++..|.+
T Consensus 221 ~~aG~~~--id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 221 LEEGITV--FDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred HHhCCCE--EEEEccccCCCCCCCCccccccHHHHHHHHHhcCCC
Confidence 9999997 4554 7655 68999999888777776654
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.067 Score=51.97 Aligned_cols=127 Identities=11% Similarity=0.218 Sum_probs=89.2
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (254)
|.-+=||+||..+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667889999999999999999999998652 122211 133333334343 78999999999999999877762
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
-+.++-.+.|+.+++.||.++. +....+. + + +|.+.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl--P---~------------------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI--P---G------------------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhCCCCEE
Confidence 2456677899999999987531 2222221 1 1 257888999999999999987
Q ss_pred EEec
Q 025344 203 MIDS 206 (254)
Q Consensus 203 iiEa 206 (254)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6554
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=47.79 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=99.9
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (254)
+=||.||....|.+.|++.++.++++. +.++.+|=-+.. +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668999999999999999999998753 122222211111 1133456666667799 4688743333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEE
Q 025344 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (254)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vi 203 (254)
..+.++..+.+++++++|++|...+=+ +. + + ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl--P---g------------------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL--P---G------------------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC--C---C------------------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235677889999999999987764433 21 1 1 1478889999999999999776
Q ss_pred E------ecccccc--cCCCcc-------HHHHHHHHhccCCCceEEe
Q 025344 204 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 236 (254)
Q Consensus 204 i------Eargi~d--~~g~~r-------~d~i~~ii~~l~~~klifE 236 (254)
+ ++-.+++ ..|.+. .+++..++..++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 5 3222222 235443 3456677899999988877
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=47.37 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=102.1
Q ss_pred ccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 52 QFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~G-t-l~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.-+|.+.+...+|-.+.. +.+++-++++|++|..|+.+ . |++. ....++.+.++++.+.+.|.+.|
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i 168 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWL 168 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEE
Confidence 356777776665543222 24688999999999988774 2 3331 12234467778888899999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-|.|-.-.+.+++-.++++.+++. +. -..++. |+-.|...-...+...++||
T Consensus 169 ~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~--------------------------H~Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 169 VLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGI--------------------------HAHNDSGLAVANSLAAVEAG 220 (273)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEE--------------------------EecCCCCcHHHHHHHHHHcC
Confidence 999999999999999999999984 11 011333 11123444578888889999
Q ss_pred CcEEEEecc--cccccCCCccHHHHHHHHh
Q 025344 199 ADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 199 A~~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
|++ +++. |+=+..||...+.+-..+.
T Consensus 221 a~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 221 ATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCE--EEEeccccccccccccHHHHHHHHH
Confidence 996 6765 8889999999887776664
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.18 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=26.2
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~e 74 (254)
.......+++..++++|++|.|..-..-+..+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ 49 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEE 49 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHH
Confidence 567788899999999999999965544444444443
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.086 Score=50.50 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred hHHHHHHHhhcccccEEeecCcccccC--------ChhH---HHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPF---IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~--------~~~~---l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
..++..+++- +|.+-+...+|-.+ +++. +++-|++++++|..+. .|..++. .-.++.+
T Consensus 125 ~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l 199 (347)
T PLN02746 125 KGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKV 199 (347)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHH
Confidence 4555556553 45566665554222 2333 4489999999999773 2332222 2345578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++.-+ + .|
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~-H-------------------------nd 251 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHF-H-------------------------DT 251 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-C-------------------------CC
Confidence 899999999999999999999999999999999999874 22 12344421 2 13
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccc------cCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+-..++|||++|=.=--||=. ..||.-++.+-..++.+|.+
T Consensus 252 ~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~ 305 (347)
T PLN02746 252 YGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVS 305 (347)
T ss_pred CChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 4445788888999999975333347654 68999988887777776643
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.14 Score=48.82 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=103.8
Q ss_pred cccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 53 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
-+|.+-+...+|-++.+ +.+.+-++.++++|..+..+ +|.+....++.+.++++.+.++|.+.|-+.
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 37777777776655321 34668888999999877643 244444555678888888999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
|-.-.+.+++-.++|+.+++. +.+.-+|+- +. |...-+..+...++|||++
T Consensus 162 DT~G~~~P~~v~~li~~l~~~-~~~~l~~H~---Hn-------------------------d~GlA~AN~laA~~aGa~~ 212 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKEN-VKLPISVHC---HN-------------------------DFGLATANSIAGVKAGAEQ 212 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcc-cCceEEEEe---cC-------------------------CCChHHHHHHHHHHCCCCE
Confidence 999999999999999999874 112122222 21 2344477788889999986
Q ss_pred EEEecc--cccccCCCccHHHHHHHHhc-cC
Q 025344 202 IMIDSD--DVCKHADSLRADIIAKVIGR-LG 229 (254)
Q Consensus 202 ViiEar--gi~d~~g~~r~d~i~~ii~~-l~ 229 (254)
|++- |+=+..||...+.+-..+.. .|
T Consensus 213 --vd~s~~GlGeraGN~~lE~vv~~L~~~~g 241 (363)
T TIGR02090 213 --VHVTVNGIGERAGNAALEEVVMALKYLYG 241 (363)
T ss_pred --EEEEeeccccccccccHHHHHHHHHHhhC
Confidence 5664 88899999999877666654 44
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.24 Score=44.78 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
.+.+.++.+.+.|+.+|=|-|+. --+|.+++.+.|+.+++.-=.. ++|-+-.. -|..
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiAR-------TDa~---- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIAR-------TDAL---- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEE-------cCch----
Confidence 34455677777999999996655 4679999999999888741111 34444211 1110
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
.. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..
T Consensus 153 ~~-------~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 153 LA-------GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred hc-------cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCC
Confidence 00 01258999999999999999999999752 558888888887755555556654
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.44 Score=43.59 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=98.5
Q ss_pred HHHHHHHhhcccccEEeecCcccc---------cCChhHHHHHHHHHH-hCCceecCCcHHHHHHHhCCchHHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAH-QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~---------l~~~~~l~eKi~l~~-~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
.+-..|+.+| ||++=+||.++. ..+.+.+++...+.+ +..+.+. ........+.++.+.
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~a~ 92 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVM---------VDYGNDDIDLLEPAS 92 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEE---------ECCCCCCHHHHHHHh
Confidence 4455677787 999999986553 234566776666653 2222211 111002346788889
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHH
Q 025344 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
+.|++.|-|+...-. -+.-.+.|+.++++|++|. ++..+.. . .+++.+++.+
T Consensus 93 ~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~--~~~~~a~------------------~------~~~~~~~~~~ 144 (266)
T cd07944 93 GSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVF--FNLMAIS------------------G------YSDEELLELL 144 (266)
T ss_pred cCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEE--EEEEeec------------------C------CCHHHHHHHH
Confidence 999999999875543 3445678999999998654 5553211 0 1588999999
Q ss_pred HHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 192 ~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+...++||+.|. +.|..|...+..+.++++.+
T Consensus 145 ~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 145 ELVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 999999999874 68889999999888888665
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.16 Score=47.99 Aligned_cols=124 Identities=14% Similarity=0.228 Sum_probs=86.1
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
.++.+=||+||..+.+.+.+++..+..+++++. ++. |+.+.-+|+ --++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~~--eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--EDL--EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CCC--EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 478899999999999999899888888765542 221 333222232 3468999999999999988766552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||..++ +....+. + + ++.+++.+.++..++.|.+.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl--P---g------------------qt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL--P---N------------------QTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 3456677889999999986221 2222221 0 1 25788899999999999988
Q ss_pred EEE
Q 025344 202 IMI 204 (254)
Q Consensus 202 Vii 204 (254)
|-+
T Consensus 183 is~ 185 (374)
T PRK05799 183 ISC 185 (374)
T ss_pred EEE
Confidence 744
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.18 Score=45.88 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-. |.
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~-----gv--------------- 76 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIA-----GT--------------- 76 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEe-----cc---------------
Confidence 368899999999999999887 776 99999999999999984 111111110 10
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.+++++..-++||+.|++=.-
T Consensus 77 ---~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 77 ---GSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred ---CCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 0114788899999999999999999764
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=47.69 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 67 ~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
++.+.|++-|+.+++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 466779999999987421111 2 221 1123 57889999999999999998663 32 589999998877
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCc-cHHHHH
Q 025344 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL-RADIIA 222 (254)
Q Consensus 146 v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~-r~d~i~ 222 (254)
|.+.++- ++.+++..++|||.|+++++ |-+. |.. ..+++.
T Consensus 112 v~~~v~s-----------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~ 154 (307)
T TIGR03151 112 VIPVVAS-----------------------------------VALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVP 154 (307)
T ss_pred EEEEcCC-----------------------------------HHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHH
Confidence 7643211 55677888999999999887 2221 222 467777
Q ss_pred HHHhccC
Q 025344 223 KVIGRLG 229 (254)
Q Consensus 223 ~ii~~l~ 229 (254)
++.+.++
T Consensus 155 ~v~~~~~ 161 (307)
T TIGR03151 155 QVVDAVS 161 (307)
T ss_pred HHHHHhC
Confidence 8777654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.25 Score=43.50 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-..|..+| ||.+=.|+....--+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445566777 8888888555444555556666666666 2221 1111 111235555667789999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
...-++ + .+.-.++|+.+++.|+.| .|+..+.. ..+++.+.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~------------------------~~~~~~~~~ 141 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS------------------------RTDPEELLE 141 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG------------------------GSSHHHHHH
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc------------------------cccHHHHHH
Confidence 655441 1 234457899999999998 55552110 115899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++..++|++.| .|.|..|...++.+.++++.+
T Consensus 142 ~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 142 LAEALAEAGADII-----YLADTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp HHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHHHH
Confidence 9999999999988 467888888888887777543
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.39 Score=46.06 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=91.9
Q ss_pred hHHHHHHHhhcccccEEeecCc-----ccc-cCChhHHHHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~G-----T~~-l~~~~~l~eKi~l~~~~gV~v~~-G-tl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+.+|- . +++--.-.. .+.+|++.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e 90 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVE 90 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHH
Confidence 4566666654455888777743 122 24556699999999999996664 4 543222111 47899999999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
+|-|+|+++| .-+|..+++.|-..--.++.+.. ++ + .+.++
T Consensus 91 ~GvDaviv~D----------pg~i~l~~e~~p~l~ih~S~q~~---------------v~----------N----~~~~~ 131 (347)
T COG0826 91 LGVDAVIVAD----------PGLIMLARERGPDLPIHVSTQAN---------------VT----------N----AETAK 131 (347)
T ss_pred cCCCEEEEcC----------HHHHHHHHHhCCCCcEEEeeeEe---------------cC----------C----HHHHH
Confidence 9999999999 68899999977222112222211 11 1 56677
Q ss_pred HHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 193 ~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
-.-+.||. .+|=+| +++.+.|.+|.++++
T Consensus 132 f~~~~G~~-rvVl~r-------Els~~ei~~i~~~~~ 160 (347)
T COG0826 132 FWKELGAK-RVVLPR-------ELSLEEIKEIKEQTP 160 (347)
T ss_pred HHHHcCCE-EEEeCc-------cCCHHHHHHHHHhCC
Confidence 77888954 455566 567788888887764
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.49 Score=44.85 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=88.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
-|+.+=||+||..+.+.+.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 377788899999999989999999999986 321 0 012222222223 36889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++..+.|+.+++.||.... +....+. + + ++.+++.+.++..++.|.+
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl--P---g------------------qt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL--P---G------------------QTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC--C---C------------------CCHHHHHHHHHHHHccCCC
Confidence 35677888999999999986322 2222121 0 1 2478888889999999999
Q ss_pred EEEEe
Q 025344 201 MIMID 205 (254)
Q Consensus 201 ~ViiE 205 (254)
.|.+-
T Consensus 183 ~i~~y 187 (377)
T PRK08599 183 HYSAY 187 (377)
T ss_pred EEeee
Confidence 87553
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=47.12 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~ 108 (254)
.++..+++- +|.+.+...+|-.+.+. .+++-++.++++|..+..+ +|.- .+.-.++.+.++++
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 45566666555443322 2556689999999977764 3221 11335668889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + +...++. |+-.|...-+
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~--------------------------H~Hnd~Gla~ 206 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDF--------------------------HAHNDYDLAV 206 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEE--------------------------EeCCCCCHHH
Confidence 9999999999999999999999999999999873 1 1112333 1112344557
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH-hccCC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 230 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii-~~l~~ 230 (254)
..+...++|||++ +++. |+=+..||...+.+-..+ .+.|.
T Consensus 207 AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~ 249 (280)
T cd07945 207 ANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVLKDKLKV 249 (280)
T ss_pred HHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHHHHhcCC
Confidence 8888899999995 6665 888999999999887777 44554
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.36 Score=45.47 Aligned_cols=109 Identities=12% Similarity=0.208 Sum_probs=77.5
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~---~qg~~~~~~yl~~~k~ 112 (254)
.+.++.+.+..+-+ .+.-+-|..|.....+.+.+.+-++..+++ ++.++.-|-.|+.+ .-| -..++.++.+|+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g-~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSG-LSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 45555555544444 477788888877777888889999999998 46655445556533 222 246899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 025344 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 9999884 222222 26788999999999999998866
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.22 Score=45.81 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=106.9
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
+.++..+++- +|.+-+...+|-.+.. +.+.+.++.++++|..+. .|..++--. .++.+
T Consensus 77 ~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~ 151 (274)
T cd07938 77 RGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERV 151 (274)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHH
Confidence 4555555543 6777777666643221 446677999999999873 222222111 23467
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..+++.- +-.|
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H--------------------------~Hnd 203 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALH--------------------------FHDT 203 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEE--------------------------ECCC
Confidence 788889999999999999999999999999999999985 21 1233331 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--ccc------ccCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~------d~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+...++|||++ +++- |+= +..||..++.+-..++..+.+
T Consensus 204 ~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~ 257 (274)
T cd07938 204 RGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIE 257 (274)
T ss_pred CChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCC
Confidence 444578888899999985 6664 553 578999999887777766543
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.89 Score=41.53 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=89.0
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
....+..+++.+.++ +..+.|.+|-..+.+. +.+.++.++++|+ . +.+ |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRKD--LIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECcccccccC--HHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 556788888766554 7889999999877765 7789999999976 3 344 5543 3456667889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
|++.|-||=-+.+ -+.+.-++.|+.+++.|+. ++-.+-+-.+ .
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g--------~------------------ 161 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKG--------I------------------ 161 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCC--------C------------------
Confidence 9999999876652 2456677889999999986 4443333110 0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|++.-.+|--
T Consensus 162 n~~ei~~~~~~~~~~g~~~~~ie~~ 186 (302)
T TIGR02668 162 NDNEIPDMVEFAAEGGAILQLIELM 186 (302)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 2344455555555689988777754
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.11 Score=49.64 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=85.0
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 125 (254)
-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 5889999999999999999999999998831 1111 13554444555554 899999999999988765554
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
.-+.++-.+.++.+++.+..|-..+ .++. + + ++.+.+.+.++..++.+.+.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl--P---g------------------qt~~~~~~~l~~~~~l~p~~ 186 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR--P---G------------------QTLAAWRAELKEALSLAADH 186 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC--C---C------------------CCHHHHHHHHHHHHhcCCCe
Confidence 2244555677888888744332222 1111 1 1 14777888899999999997
Q ss_pred EEE
Q 025344 202 IMI 204 (254)
Q Consensus 202 Vii 204 (254)
|-+
T Consensus 187 is~ 189 (380)
T PRK09057 187 LSL 189 (380)
T ss_pred EEe
Confidence 644
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.43 Score=43.56 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+++++..|-|+|=+.... ++.++..++++.+++.|+.++.|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 788999999999998877 46788999999999999988887765
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~-klifEAP~-k~qQ~~~I~~~Gp~ 253 (254)
.+++++.+++||++|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad 235 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGAD 235 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCC
Confidence 334466779999999988775422 234477788888877643 67888875 46667677777765
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=46.63 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred hHHHHHHHhhcccccEEeecCccccc-----------CChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSL-----------MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l-----------~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..++-.+++ =+|.+-+...+|-. ..-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++.
T Consensus 75 ~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 75 DDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHH
Confidence 455555554 45566665544421 112235666799999998777542 23333334578899999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .+++.-+ +. |...-+.
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~-Hn-------------------------~~Gla~a 200 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHG-HN-------------------------DTGCAIA 200 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHH
Confidence 999999999999999999999999999999884 22 2344421 21 2333477
Q ss_pred HHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
.+...++|||++ +++. |+=+..||.-.+.+-..+..
T Consensus 201 n~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~~ 238 (262)
T cd07948 201 NAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMYT 238 (262)
T ss_pred HHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHHh
Confidence 788889999995 7776 99999999998887776643
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.25 Score=49.28 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=91.8
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (254)
.-|+.+=||+||..+.+.+.|.+.++.++++-..+. ..-|+.+.- .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999987521111 111333322 1222 468899999999999999877764
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-+.++-.+.++.+++.||. +-..+=. +. + -++.+++.+.++..++.+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~--GL--P---------------------gEt~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII--GL--P---------------------GEGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe--CC--C---------------------CCCHHHHHHHHHHHHhcC
Confidence 6778888999999999994 3332222 21 1 114788899999999999
Q ss_pred CcEEEEec
Q 025344 199 ADMIMIDS 206 (254)
Q Consensus 199 A~~ViiEa 206 (254)
.+.|-+=.
T Consensus 350 pd~isv~~ 357 (488)
T PRK08207 350 PESLTVHT 357 (488)
T ss_pred cCEEEEEe
Confidence 99876654
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.4 Score=43.19 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred hhHHHHHHHhhcccccEE------------eecCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHH
Q 025344 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFK 104 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~l------------Kfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~ 104 (254)
+..+....+...+|.|++ |-|.|+..+.+++.+.+.++-.++.+++|+. .+|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 445555554444555555 4467888888899999999999998887764 2332 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++.+.+.+.|.++|-++.+.-. +..+ .++|+.++ .. +|=++. . .+ . |
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad-~~~I~~i~-~~---ipVIgn---G-gI-----------~-----------s- 202 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHAD-LKKIRDIS-TE---LFIIGN---N-SV-----------T-----------T- 202 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCc-HHHHHHhc-CC---CEEEEE---C-Cc-----------C-----------C-
Confidence 7778889999999999876543 2223 36677765 21 232333 1 11 1 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDD 208 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEarg 208 (254)
.+.+++.|+.|||.||| ||+
T Consensus 203 ---~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 203 ---IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred ---HHHHHHHHHcCCCEEEE-cCC
Confidence 56777778889999998 554
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=50.04 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=107.6
Q ss_pred HHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~--~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
..+..++.| ..-||.+-+....+-+. .+++-|+.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~---n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR---NLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH---HHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 345555554 44599999888766653 48999999999996532 12 1111 133346777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|=|.|-.--+.+.+=.++|+.+++. +.+ .++.- .+. |...-+..+-..++|
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~-~~~--pi~~H-~Hn-------------------------t~GlA~AN~laAiea 221 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA-VTV--PLEVH-THA-------------------------TSGIAEMTYLKAIEA 221 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh-cCC--eEEEE-ecC-------------------------CCCcHHHHHHHHHHc
Confidence 9999999999999999999999984 221 23331 021 233347778888999
Q ss_pred CCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 198 GA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
||+.|=.=-.|+-...||..++.+-..++..+.+
T Consensus 222 Gad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 222 GADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 9996433334777789999988877777666643
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.74 Score=43.71 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=93.8
Q ss_pred HHHHHHHhhcccccEEeecC-----------cccccCChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-----------GT~~l~~~~~l~eKi~l~~~~gV~--v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
.+-..|+.+| ||.+=+|. |.+...+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 3444566666 77777753 234444555566555554432221 1133 11 33 4578
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|+.|. +...... . .+++.++
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~--------------~----------~~~e~l~ 146 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH--------------M----------TPPEKLA 146 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc--------------C----------CCHHHHH
Confidence 89999999999987655543 35689999999998754 2332110 1 1589999
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 147 ~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 147 EQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 99999999999976 478999999999998888654
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.27 Score=47.45 Aligned_cols=125 Identities=14% Similarity=0.300 Sum_probs=87.5
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ .++++.++++|++.|.|.-=|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 244444466666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.++.+++.+..+-. -..++. + -++.+.+.+.++..++.+.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~~v~~--DlI~Gl--P---------------------gqt~e~~~~~l~~~~~l~p~ 192 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFPRVSF--DLIYAR--S---------------------GQTLKDWQEELKQAMQLATS 192 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCcEEE--EeecCC--C---------------------CCCHHHHHHHHHHHHhcCCC
Confidence 2455666778888775222211 112121 1 12578889999999999998
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 193 his~ 196 (390)
T PRK06582 193 HISL 196 (390)
T ss_pred EEEE
Confidence 7644
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.45 Score=43.65 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHhhcccccEEeecCcc--------cccCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHH
Q 025344 43 LEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT--------~~l~~~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
.-+.++.++.|.|++=+-.|| +.....+.+.+.++-.++. ++++.- .. +.+.+.++.+.+.
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~ 179 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAE 179 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHH
Confidence 344444454668888776664 4556777889999988875 665553 21 1124667888899
Q ss_pred HcCCCEEEecCCcc
Q 025344 112 QVGFDTIELNVGSL 125 (254)
Q Consensus 112 ~lGF~~IEISdGti 125 (254)
+.|.|.|.|++++-
T Consensus 180 ~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 180 EAGADGLTLINTLR 193 (300)
T ss_pred HcCCCEEEEEccCC
Confidence 99999999997653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.73 Score=40.40 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++++.|++.|-+.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 566789999999 6666554221
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccc---CCCccHHHHHHHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKH---ADSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~---~g~~r~d~i~~ii~~l~~~klifEAP~k-~qQ~~~I~~~Gp 252 (254)
+ .+++++..++|+++|.+..+|.... ......+.+.++.+.++ -.++-+---+ ..+..-+...|.
T Consensus 128 -t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~l~~Ga 196 (221)
T PRK01130 128 -T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKALELGA 196 (221)
T ss_pred -C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCC
Confidence 1 3345678899999999887766432 12234567777766553 2244443332 233333334443
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.34 Score=45.30 Aligned_cols=130 Identities=18% Similarity=0.308 Sum_probs=89.1
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++..+++.+.+ -+..+.|.+|.-.+.+. +.+.++.+++++ + .+.+ |+++ .++++.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~d--l~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRG--CDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCcccc--HHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 55677777765443 37889999999877765 888999888875 2 3344 5443 345677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|++.|-||=-+++ -+.+.-.+.|+.+++.|+ .++-.+-+-.+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g-------------------------- 166 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG-------------------------- 166 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------
Confidence 99999999987763 234567788889999988 45443322100
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+.+++.+.++-..+.|+++..+|--
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~~ie~m 192 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIAFIEEM 192 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 02455666666667789999999864
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.46 Score=42.94 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.- ...+-+-.+ +
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v------------------- 73 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---V------------------- 73 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---c-------------------
Confidence 68899999999999999665433 4899999999999998841 111111100 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.+++++..-++||+.|++=.-
T Consensus 74 -~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 74 -GANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred -CCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 0114778899999999999999999764
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.69 Score=43.26 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=80.6
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+....+.++..|. =.+-|.+|=-.+.|. +.+.++.+++.|+ .+.| |++++- .+ +..+..|..
T Consensus 61 ~ee~~~~i~e~g~--~~V~i~GGEPLL~pd--l~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~~ 125 (318)
T TIGR03470 61 VEECLRAVDECGA--PVVSIPGGEPLLHPE--IDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPYL 125 (318)
T ss_pred HHHHHHHHHHcCC--CEEEEeCcccccccc--HHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCCc
Confidence 3444455555553 357778898888775 8999999999986 4556 776542 22 334667888
Q ss_pred EEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 117 TIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 117 ~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
.|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+-.. . ++++
T Consensus 126 ~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~-------~-------------------n~~e 179 (318)
T TIGR03470 126 TFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFND-------T-------------------DPEE 179 (318)
T ss_pred EEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCC-------C-------------------CHHH
Confidence 89998 6643221 233457899999999876655544100 0 2555
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 025344 187 LIRRAERCLEAGADMIMID 205 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiE 205 (254)
+.+.++..-+.|++.|.+-
T Consensus 180 i~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 180 VAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 5555565667899888773
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.7 Score=41.38 Aligned_cols=92 Identities=15% Similarity=0.317 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+. -...+ .|++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~~-~d~~-------- 82 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLGN-PNKE-------- 82 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCCC-CCHH--------
Confidence 3788899999999999999754 22 45666777777888899998421 1111110 01111 1111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
....+.+.+.+.++..-+.||..|++-.-
T Consensus 83 ----~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 83 ----ILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 01123556666666677889999998653
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.74 Score=42.96 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
.+.+.++++.+.|...|=|-|.+ --+|.+++++-|+.+++. +.-++|-+- .. -|.
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~Ii---AR----TDa-- 161 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMII---AR----VES-- 161 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEEE---Ee----ccc--
Confidence 56677788888999999996643 357999999999999885 112233331 11 111
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
. +. ....++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 --~-----~~---~~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 --L-----IL---GKGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred --c-----cc---cCCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 11 11478999999999999999999994 2234566777776664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=94.65 E-value=2 Score=35.22 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=80.7
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (254)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-||=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999998766888888888874 2222211 1111236788999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 126 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
.-+.+...+.|+.+++.| +.|.+-+-+ +. ..+ +.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~~------------------~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PGE------------------TEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CCC------------------CHHHHHHHHHHHHHc
Confidence 345688889999999999 444332222 11 011 356667777767788
Q ss_pred CCcEEEE
Q 025344 198 GADMIMI 204 (254)
Q Consensus 198 GA~~Vii 204 (254)
|++.|.+
T Consensus 180 ~~~~i~~ 186 (216)
T smart00729 180 GPDRVSI 186 (216)
T ss_pred CCCeEEe
Confidence 9986554
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.53 Score=43.10 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +..-+-+-. -+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv------------------ 77 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GT------------------ 77 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ec------------------
Confidence 68889999999999999884 665 89999999999999884 111111100 01
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
+..+.++.+++++..-++||+.|++=.--.+...-+---+-..+|++..++.=+++-.|
T Consensus 78 --~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 78 --GSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred --CCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 11247889999999999999999996642221110001122334444445555555555
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.57 Score=47.82 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
..+..++.|.+. ||.+-+....+-+ +-+++-++.+|++|..+... ++ +=...++.+-++.+.+.+.|.+.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT---SPVHTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCE
Confidence 345556655444 9998888655543 45999999999999876643 11 10122346667777788899999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|-|.|-.--+.+.+=.++|+.+++. +.+ .++.- .+. |...-+-..-..++|
T Consensus 166 I~i~Dt~G~~~P~~v~~lv~~lk~~-~~~--pi~~H-~Hn-------------------------t~Gla~An~laAvea 216 (582)
T TIGR01108 166 ICIKDMAGILTPKAAYELVSALKKR-FGL--PVHLH-SHA-------------------------TTGMAEMALLKAIEA 216 (582)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHh-CCC--ceEEE-ecC-------------------------CCCcHHHHHHHHHHh
Confidence 9999999999999999999999874 111 13331 011 233347777888999
Q ss_pred CCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 198 GA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
||+.|=.=-.|+=...||...+.+-..++..+.+
T Consensus 217 Ga~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 217 GADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CCCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 9996533334888889999988777766666543
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.6 Score=40.57 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=89.7
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHh-CCc---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~-~gV---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
.+..+..+++.+.++ |.-+.|.+|-..+.+. +.+.++.+++ .|+ .+.+ |.++ +++++.+++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~~--l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--LVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccCC--HHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 556777777765444 8889999999888765 8888888777 455 3344 5443 345677899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.|++.|-||=-+.+ .+.+.-.+.|+.+++.|+. ++--+-+..+ .
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g---~--------------------- 166 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRG---V--------------------- 166 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC---C---------------------
Confidence 99999999965542 2457778899999999986 5544333100 0
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|+..-.+|--
T Consensus 167 --n~~ei~~l~~~~~~~gv~~~~ie~m 191 (334)
T TIGR02666 167 --NDDEIVDLAEFAKERGVTLRFIELM 191 (334)
T ss_pred --CHHHHHHHHHHHHhcCCeEEEEecc
Confidence 2455666666667889987777754
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.1 Score=42.84 Aligned_cols=143 Identities=23% Similarity=0.323 Sum_probs=96.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=+||= ..+++ -.+.++.+.+.+.....-+|. + ...+-++.+.+.|++.|.|+
T Consensus 26 ~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i~ 91 (363)
T TIGR02090 26 EIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHTF 91 (363)
T ss_pred HHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEEE
Confidence 4556677777 888888763 33333 245555555544422222333 1 12445788899999999997
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+=++ +. +.-.+.|+.+++.|++| +++..+.. ..|++.+++
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~------------------------r~~~~~l~~ 145 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT------------------------RTDIDFLIK 145 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC------------------------CCCHHHHHH
Confidence 765333 33 44457899999999876 45553110 115889999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.++...++||+.|. ++|..|...++.+.++++.+-
T Consensus 146 ~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 146 VFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 99999999998764 688999999999998887654
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.56 Score=46.98 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=97.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. .-.+..++.-++..++.|++.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 4456677788 99999999654333344444433322 2344432 11 0112257777777778999999998
Q ss_pred CCcccCChhH------------HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEIPEET------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i~~~~------------r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-++-.+. -.+.|+.+++.|++| +|+..+.. - .|++.+++
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~--------------r----------~d~~~l~~ 153 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT--------------R----------TDLDFLCR 153 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC--------------C----------CCHHHHHH
Confidence 8775443222 247899999999986 45553110 1 15889999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 154 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 154 VVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred HHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888655
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.1 Score=41.27 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=86.2
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-C
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-G 123 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-G 123 (254)
+.+|+|++|+|-+. +.+.+.|++ + -+.|. .+..| |.-|.. .-++++++-|-.-|=+=. |
T Consensus 95 ~~e~vdilqIgs~~--~~n~~LL~~-v---a~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 95 AYDYLDVIQVGARN--MQNFEFLKT-L---SHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERG 159 (250)
T ss_pred HHhcCCEEEECccc--ccCHHHHHH-H---HccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEccc
Confidence 34589999999766 445443332 2 23455 44557 333332 223344566776555555 7
Q ss_pred cccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 124 SLEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 124 ti~i~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
+-.-|...| ++.|...++ .++.|+. +. .+..| . .+.+...++..+.+|
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lPViv--d~---SHs~G---~-------------------r~~v~~~a~AAvA~G 212 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLPIIV--DV---SHSTG---R-------------------RDLLLPAAKIAKAVG 212 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCCeEE--CC---CCCCc---c-------------------cchHHHHHHHHHHhC
Confidence 766665544 466677776 3322111 11 11111 1 334567788999999
Q ss_pred CcEEEEecc-----cccccCCCccHHHHHHHHhccCC
Q 025344 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 199 A~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
|+-+|||-- -.+|..-.+..+.++++++++..
T Consensus 213 AdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 213 ANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred CCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 999999983 78999999999999999987753
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.81 Score=46.94 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=120.9
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHH
Q 025344 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLI 96 (254)
Q Consensus 23 ~~GlT~V~----DkG~~~~~g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~ 96 (254)
++-+-|++ =+||... .-+-.+-+++.|.++ ||++-..- +|-+-+.++.-|+.++++|..+.+- .+.- .-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTT-SP 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecC-CC
Confidence 45667777 7787665 555666677765555 99988774 5666677999999999999844321 0100 11
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
.+.++.+.++.+.+.++|.+.|=|.|-.--+.+.+=.++|+.+++. +. -.++.- .+.
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H-~Hn------------------- 206 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLH-SHS------------------- 206 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEE-eCC-------------------
Confidence 2333466677777888999999999999999999999999999984 21 123331 011
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|...-+...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 207 ------t~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 207 ------TSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred ------CCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 2333466777789999996433334887778999988877777766643
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=41.05 Aligned_cols=128 Identities=26% Similarity=0.400 Sum_probs=84.2
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
....+.++++.+.+. +..+-|++|--.+.|. +.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARPD--LVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCcccccccc--HHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 456677777665443 5678899999888775 889999999999854 34 6542 145677788899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.--+.+. + .+
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~---------~------------------~N 158 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH---------R------------------HN 158 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEec---------c------------------CC
Confidence 999999965542 1 12333567788888887643323221 0 02
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 025344 184 VDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiE 205 (254)
.+++-+.++-..+-|++.+-+.
T Consensus 159 ~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 159 IDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 4455555555567799988664
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.58 Score=42.47 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=51.0
Q ss_pred hHHHHHHHhhccc-ccEEeecCcccc-------cCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~~-------l~~~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.+..+.+-++ +|++=+-++|-. +...+.+.+.++..|+. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4555555555566 788877766543 33456678888888876 443332 2211 11256778888
Q ss_pred HHHcCCCEEEecCCcc
Q 025344 110 CKQVGFDTIELNVGSL 125 (254)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (254)
+.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 9999999999998764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.73 Score=47.10 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred hHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 41 NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 41 ~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+-.+..++.|.+ -||.+.+....+-+ +-+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad 169 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCD 169 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCC
Confidence 345666666554 59999998766655 44899999999999876521 1100 12234566677778889999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
.|=|.|-.--+.+.+-.++|+.+++. +.+ .++.-+ +. |...-+......++
T Consensus 170 ~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~~--pi~~H~-Hn-------------------------t~Gla~An~laAv~ 220 (592)
T PRK09282 170 SICIKDMAGLLTPYAAYELVKALKEE-VDL--PVQLHS-HC-------------------------TSGLAPMTYLKAVE 220 (592)
T ss_pred EEEECCcCCCcCHHHHHHHHHHHHHh-CCC--eEEEEE-cC-------------------------CCCcHHHHHHHHHH
Confidence 99999999999999999999999884 211 233310 11 22334777788899
Q ss_pred cCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 197 AGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 197 AGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
|||+. |++- |+-...||...+.+-..++..+.
T Consensus 221 aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g~ 254 (592)
T PRK09282 221 AGVDI--IDTAISPLAFGTSQPPTESMVAALKGTPY 254 (592)
T ss_pred hCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCCC
Confidence 99996 5654 78778898888877666665543
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.39 Score=47.04 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=85.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123322222222 36889999999999997765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
.-+.++-.+.|+.+++.||..+. +..-++. + -+|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl--P---------------------gqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL--P---------------------GQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC--C---------------------CCCHHHHHHHHHHHHhcCCC
Confidence 23455666778888888865322 2222221 1 12578889999999999999
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.5 Score=45.02 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=106.8
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v-----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
..+..++.|.+. ||.+-+.-..+- -+.++.-|+.++++|..+ |+++- + ...+.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCC
Confidence 455567766554 999888854433 356889999999999853 22321 1 123467778888899999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL 195 (254)
+.|=|.|-.--+.+.+-.++|+.+++. +. ..++.- .+ .|...-+......+
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H-~H-------------------------nt~GlA~An~laAi 220 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLH-CH-------------------------ATTGLSTATLLKAI 220 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEE-EC-------------------------CCCchHHHHHHHHH
Confidence 999999999999999999999999984 11 123331 01 12444577788889
Q ss_pred HcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 196 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 196 eAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+|||+.|=.=-.|+=...||...+.+-..++..+
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 9999965333348877889999887776666554
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.7 Score=43.49 Aligned_cols=171 Identities=11% Similarity=0.079 Sum_probs=115.0
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHH
Q 025344 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEH 94 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~-----~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--G-tl~E~ 94 (254)
+-+.|++- |..++ |. .-.+-+++.| ..-||++-..- .+-.-+.++.-|+.++++|..+.. + |.--
T Consensus 85 t~lqmLlR-G~n~v-gy~~ypddvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp- 158 (468)
T PRK12581 85 TRLQMLLR-GQNLL-GYRHYADDIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP- 158 (468)
T ss_pred Cceeeeec-ccccc-CccCCcchHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-
Confidence 45555554 53322 22 3344456665 55699988875 566777899999999999987542 1 2200
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
....+.+.++.+.+.++|.+.|=|.|-.--+.+++=.++|+.+++. . ...++.-+ +.
T Consensus 159 --~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~--~~pi~~H~-Hn----------------- 215 (468)
T PRK12581 159 --VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T--NLPLIVHT-HA----------------- 215 (468)
T ss_pred --cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c--CCeEEEEe-CC-----------------
Confidence 1111236667778889999999999999999999999999999873 1 22344411 21
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|...-+...-..++|||+.|=.=-.|+-...||..++.+-..++..+.+
T Consensus 216 --------t~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 216 --------TSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred --------CCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 2334477778889999996433334888888999988877777766543
|
|
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.25 Score=45.61 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=47.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee
Q 025344 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
..|.|+-.+ -+..+=+.-+|++|||.||+|-.- ++-+.++|..+++...+.|+.+-|-.
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmC 74 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMC 74 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchh
Confidence 346666554 357777888899999999999653 58899999999999999998876643
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.51 Score=48.30 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+..-+.... +. .+
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~p----~~----------------- 152 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--SP----VH----------------- 152 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--CC----cc-----------------
Confidence 68999999999999999999977766 3455789999999997654443321 10 11
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+++.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 153 -~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 153 -TLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred -CHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 478889999999999999764 78999999999998888765
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.2 Score=42.03 Aligned_cols=129 Identities=26% Similarity=0.334 Sum_probs=86.6
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
....+.++++.+.++ +-.+-|.+|--.+.|. +.+.++.+++.|+.+ .| |+++ -++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRKD--LEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCchh--HHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcC
Confidence 456677777765443 4567888899888775 889999999999843 45 5542 134556678899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
++.|.||=-..+ . +.+.-.+.|+.+++.|++|..-+.+. . .+
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~---------~------------------~N 167 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIH---------R------------------HN 167 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEee---------c------------------CC
Confidence 999999965541 1 35566678889999988754333331 0 02
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++.+.++-..+.|++.|.+-.
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLELAN 190 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec
Confidence 55555666666678999887643
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.63 Score=46.79 Aligned_cols=170 Identities=13% Similarity=0.076 Sum_probs=113.4
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCC
Q 025344 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG 89 (254)
Q Consensus 21 PR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~G 89 (254)
++-.++++.+.+++... --..++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..+..+
T Consensus 70 ~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~ 145 (524)
T PRK12344 70 AKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFD 145 (524)
T ss_pred cEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 44555555555555221 1123333333 3467777877777554332 3457889999999988775
Q ss_pred c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 90 D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 90 t-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
. ++.-+....++.+-++++.+.+.|.+.|-|.|-.--+.+.+-.++|+.++++ +.+ .+++
T Consensus 146 ~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~-~~v--~i~~---------------- 206 (524)
T PRK12344 146 AEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA-PGV--PLGI---------------- 206 (524)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh-cCC--eEEE----------------
Confidence 3 3322334445567778888899999999999999999999999999999885 122 2222
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii 225 (254)
|+-.|...-+-.....++|||+. ||+- |+=+..||...+.+-..+
T Consensus 207 ----------H~HND~GlA~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 207 ----------HAHNDSGCAVANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred ----------EECCCCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 12223444577788889999996 6775 888889998887765433
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.68 Score=46.11 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=102.5
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
+..-||.+-+....+-+ +.+++-++.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALNDI---RNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCHH---HHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 44469999988766653 45899999999999977621 111 0 122245667777888899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+.+=.++|+.+++. +.+ .++.- .+. |...-+-..-..++|||+.|=.=-
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H-~Hn-------------------------t~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVH-SHC-------------------------TTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEE-ecC-------------------------CCCcHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999884 221 12221 021 233347777888999999643322
Q ss_pred ccccccCCCccHHHHHHHHhccCC
Q 025344 207 DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 207 rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.|+-...||..++.+-..++..+.
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCC
Confidence 478888899998888777766664
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.55 Score=44.70 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
.|-.-.+.+|-+ |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.+
T Consensus 18 ~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 18 EFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred HHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEEE
Confidence 444555556632 33334467788899999998884 3333221220 0011124789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
+-|. |. . ++++++.|.+|++.++- ++.+++.+++|||
T Consensus 89 ~~G~---P~----~-~~~lk~~Gi~v~~~v~s-----------------------------------~~~A~~a~~~GaD 125 (320)
T cd04743 89 AGGR---PD----Q-ARALEAIGISTYLHVPS-----------------------------------PGLLKQFLENGAR 125 (320)
T ss_pred cCCC---hH----H-HHHHHHCCCEEEEEeCC-----------------------------------HHHHHHHHHcCCC
Confidence 8663 32 2 58899999888754322 6677889999999
Q ss_pred EEEEecc
Q 025344 201 MIMIDSD 207 (254)
Q Consensus 201 ~ViiEar 207 (254)
.||+|+.
T Consensus 126 ~vVaqG~ 132 (320)
T cd04743 126 KFIFEGR 132 (320)
T ss_pred EEEEecC
Confidence 9999997
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.58 Score=46.31 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++++++.+.+.|++.|-|.+..-++. .-...|+.+++.|+.| ++.+-... ++ .
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~-------~p---------------~ 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT-------SP---------------V 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec-------CC---------------C
Confidence 578899999999999999999877775 3556899999999876 44442111 01 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1588899999999999999764 67899999999888888665
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.91 Score=42.08 Aligned_cols=130 Identities=19% Similarity=0.285 Sum_probs=87.5
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~----gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++.++++.+.++ +.-+.|.+|--.+.+. +.+.++.+++. .|.+.+ |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRKD--LEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCccC--HHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766555 7889999999877764 88999999887 244455 543 3345677888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|.+.|-||=-+.+ -+.+...+.|+.+++.|+ .|+-.+-+-.+.
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~------------------------- 171 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGV------------------------- 171 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCC-------------------------
Confidence 99999999955432 345777889999999998 555554331110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|+..-.+|=-
T Consensus 172 -n~~ei~~l~~~~~~~gv~v~~ie~~ 196 (331)
T PRK00164 172 -NDDEIPDLLEWAKDRGIQLRFIELM 196 (331)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEee
Confidence 1234444444445679887777743
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.1 Score=41.18 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=50.3
Q ss_pred hHHHHHHHhhccc--ccEEeecC--------cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe~ag~y--ID~lKfg~--------GT~~l~~~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..+.+..+.+-++ .|++=+-. |.......+.+.+-++-.+++ ++++.- -+. +.+.+.++.+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 67775511 556666778888989888887 665543 111 1124667788
Q ss_pred HHHHcCCCEEEecCCcc
Q 025344 109 DCKQVGFDTIELNVGSL 125 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (254)
.+.+.|.|.|.+++.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 88999999999977554
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.56 Score=42.71 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=64.8
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+-+.|.++|-|=|+. +..+.|+.+++.+|.|....+..... -..++.++.++. ...+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq~-~~~~gg~~~~~~----------~~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQS-VNTSGGDEGQYR----------GDEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchhh-hhccCCceeecc----------CHHHHHHH
Confidence 34445999999999984 45567888999998877766652110 000111111111 02247899
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|++++...+|||+.|.+|+. ..+++.+|.+.++
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~ 191 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALA 191 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCC
Confidence 99999999999999999963 4667777777766
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.58 Score=47.04 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.+++.+.+.|++.|-|.|..-++ +.....|+.+++.|..+...+... .|.
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt--~sp---------------------- 150 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYT--VSP---------------------- 150 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEe--cCC----------------------
Confidence 368899999999999999999999888 556678999999998776655442 111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.-|++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I-----~IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSI-----CIKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-----EeCCCccCCCHHHHHHHHHHH
Confidence 1158999999999999999976 468889999988888888665
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.2 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=100.0
Q ss_pred hHHHHHHHh-hcccccEEeecCcccc-cCCh-----------------hHHHHHHHHHHhCCceecCC--cHHHHHHHhC
Q 025344 41 NVLEDIFES-MGQFVDGLKFSGGSHS-LMPK-----------------PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlLe~-ag~yID~lKfg~GT~~-l~~~-----------------~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg 99 (254)
..+.+++.. --.-.|++=||+=.|= +++- +..-+.++..++.++.+.-+ |++--.+.+|
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 555566554 4556899999986551 2222 22445666667666765555 7777777775
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
++.|++.|++.|++.+=| .+||.++..++...++++|+.+++=+-..
T Consensus 111 ---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPt-------------------------- 157 (265)
T COG0159 111 ---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPT-------------------------- 157 (265)
T ss_pred ---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCC--------------------------
Confidence 999999999999999876 57999999999999999999887743331
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccHHHHHHHHhc
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~i~~ii~~ 227 (254)
+++++++++ .++..-+|-.=++ |++........+ +.+++++
T Consensus 158 ---t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 158 ---TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred ---CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 133344433 5556667777777 777776664444 5555544
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.73 Score=41.73 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. .... .+ . .++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~----~~--------------~------~~~ 140 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMM----SH--------------M------ASP 140 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEe----cc--------------C------CCH
Confidence 56788899999999986543332 3556899999999986433 3311 10 1 158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.+++..++||+.|- +.|..|...++.+.++++.+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 8999999999999999764 78899999999998888654
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.63 Score=44.20 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +...... ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a~------------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMSH------------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEecc------------------------CCCH
Confidence 44788999999999998755544 345789999999998753 3332110 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999998888655
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.1 Score=38.42 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=85.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~-~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (254)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++.+++.|++.|-++--|.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666677789999999998 477543 232 346788899999999987755444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
..+.+++.+.|+.+++.|+.|.+-+=+ +. + + ++.+++.+.++...+.++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Gl--p---g------------------et~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV--GL--P---G------------------QTLEDLADDILFLKELDL 209 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE--EC--C---C------------------CCHHHHHHHHHHHHhCCC
Confidence 477899999999999999986654333 11 0 0 146777888888888898
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|.+-.
T Consensus 210 ~~v~~~~ 216 (323)
T PRK07094 210 DMIGIGP 216 (323)
T ss_pred Ceeeeec
Confidence 8776543
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.36 Score=44.65 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|.-|...+|..-.. . ..++.+....+ -...
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq~-~------~~~gg~~i~gr----t~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQS-V------NVLGGYKVQGR----DEEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeeccccee-e------cccCCeeeecC----CHHH
Confidence 33456677899999999998 467788999999999998888884221 1 00011111000 0112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++|++++...+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 67999999999999999999997
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.3 Score=42.23 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=92.6
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
.+-+.|..+| ||.+=+||-++.=.+ .+.++.+++.+ ..+. +| .+ ...+-++.+.+.|.+.|-
T Consensus 27 ~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 27 AIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAVH 90 (365)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEEE
Confidence 4556677778 888999976643222 33444444432 2222 11 12 225567888899999999
Q ss_pred ecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 120 LNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 120 ISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
|...+-+ .+.++ -.+.|+.+++.|++| +|+-.+. + ..|++.+
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~---------------r~~~~~l 144 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S---------------RADPDFL 144 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C---------------CCCHHHH
Confidence 8876532 22222 337899999999874 3444211 0 1158899
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 145 ~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 145 VELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 999999999999976 479999999999998888665
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.94 Score=41.66 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=75.8
Q ss_pred hHHHHHHHHHH-cCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCCC
Q 025344 102 AFKEYVEDCKQ-VGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 102 ~~~~yl~~~k~-lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~~~d~~~~~~~~~~~~ 176 (254)
.++++++++.+ .|.+.|=+.-. +..|+.++|.++++.+.+. ..-+.+ ..-+
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagv----------------- 80 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQV----------------- 80 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecC-----------------
Confidence 68899999999 99999988665 3579999999999998883 221111 0001
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
+..+..+.|++++..-++||+.|++=.--.+...-+---+-..++++..++.=+++-.|.
T Consensus 81 ---g~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~ 140 (293)
T PRK04147 81 ---GSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPA 140 (293)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 012478889999999999999999987543332211112334556666666667777664
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.2 Score=42.41 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=101.5
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+.++..+...+..+ |+=+|+.+|=-.|=+. |.+.|+..+++ ++.|++++-|.-.+..+.+.+|+.|.+.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--l~eIi~~l~~~-------~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--LDEIIARLARL-------GIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhcC--HHHHHHHHhhc-------ccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 677888888888888 8899999999777554 99999999998 3445555544345778889999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
|-||--|++ |. .+.=.+=|+.|.+.||. ||--.-+.-+ + +..+
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~e 168 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDE 168 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHH
Confidence 999988763 22 12334567899999997 7776666321 1 2566
Q ss_pred HHHHHHHHHHcCCcEEEEecc
Q 025344 187 LIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEar 207 (254)
+...++-.-+-|+..=+||=.
T Consensus 169 i~~l~e~~~~~~~~lrfIE~m 189 (322)
T COG2896 169 IEDLLEFAKERGAQLRFIELM 189 (322)
T ss_pred HHHHHHHHhhcCCceEEEEEe
Confidence 777788888899999999976
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.8 Score=37.65 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=62.6
Q ss_pred hhHHHHHHHhhcc-cccEEeec------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 025344 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (254)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg------------~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~ 102 (254)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 3445444444444 68999885 5666677778899999988764 223322 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (254)
..++++.+.+.|++.|.|+.++... ...-..++++.+++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7788899999999999999987532 11223466777776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.3 Score=40.60 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=69.0
Q ss_pred hHHHHHH-HhhcccccEEeecCccc-ccCChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHHhC
Q 025344 41 NVLEDIF-ESMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlL-e~ag~yID~lKfg~GT~-~l~~~~~l~e-----------------Ki~l~~--~~gV~v~~Gtl~E~a~~qg 99 (254)
..+.+++ ...-.-+|++=+|+=.| .+.+-..+++ .+.-.+ ..++++..=|++...+..|
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 4555533 35455699999998543 2222222322 222222 2344433336677777665
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+++|++.|++.|++.+=|. +||.++..++++.++++|+..++
T Consensus 106 ---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 106 ---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred ---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999999999996 68999999999999999998775
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.4 Score=41.14 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++.+.+.|.+.|=|.-.| ..|+.++|.++++.+.+. +.-.+-+-.+ +
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~---~~grvpvi~G---v------------------- 84 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVET---VAGRVPVFVG---A------------------- 84 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHH---hCCCCCEEEE---e-------------------
Confidence 68899999999999999875443 489999999999988873 1111111100 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATN 239 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP~ 239 (254)
+..++++.+++++..-++|||.|++=.--.+...-+---+-..+|++.. ++.=+++-.|.
T Consensus 85 -~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 85 -TTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred -ccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 0124788999999999999999999875222221111122334455556 36666666663
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.46 Score=43.69 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|..|..++|..-.. .. .++.+.... . -...
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq~-~~------~~gg~~~~g-r---t~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQS-VN------QLGGYKVQG-K---TEEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeecccccccee-ee------ccCCceecc-C---CHHH
Confidence 33456677899999999998 477899999999999999888884221 11 101111000 0 0112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 68999999999999999999997
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.34 Score=46.18 Aligned_cols=179 Identities=19% Similarity=0.223 Sum_probs=96.5
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--------G-tl~E~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (254)
=+|||.+ .-|+-+++..+ =..-|+.||+|||+|.+ + .+++.++.++++ -++..++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iP--p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIP--PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCC--CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 44555444443 24678899999999873 1 256666765211 2788999999999999
Q ss_pred EEecCCcccCChhHHHHHH---HHHHHc------CCccc-----ceeeeecCCCCCCCcccccc----ccccccCCCccc
Q 025344 118 IELNVGSLEIPEETLLRYV---RLVKSA------GLKAK-----PKFAVMFNKSDIPSDRDRAF----GAYVARAPRSTE 179 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI---~~~~~~------G~~v~-----~E~g~k~~~s~v~~~~d~~~----~~~~~~~~~~~~ 179 (254)
+=|+-=+.--+.+++.+++ +.+++. +++|+ ++=|.-..-.+..+ ....+ ...++-+.|...
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~~ 185 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTEE 185 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCcc
Confidence 9887766643444444444 444443 33331 11111000000100 00000 123556777543
Q ss_pred cccCHHHHHHHH---HHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 180 YVEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 180 ~~~d~~~~i~~~---~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.-+...+..+.+ ..||=||.|.. +||.+ ..+++.++..-..+...++.-=|| ||
T Consensus 186 ~l~~s~~~a~~~g~~~~dvy~GiDv~---grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 186 SLERSVQLAEGLGRSPYDVYVGVDVW---GRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred hHHHHHHHHHHcCCCHhHEEEEEEEE---cCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 322222222222 44666777654 78754 456665555555556666666677 66
|
The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.68 Score=46.37 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=101.4
Q ss_pred ccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
++.+-+...+|-++-+. .+.+-++.++++|..|..+ +|.+..-.++.+-++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 35566666666554322 2468899999999977654 2333344455788888899999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.++++ +.- ...+++ |+-.|...-+..+...++|||+
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~--------------------------H~HND~GlAvANslaAv~aGa~ 223 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISV--------------------------HCHNDLGLAVANSLAAVEAGAR 223 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEE--------------------------EecCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999874 110 012333 2233455568888889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHHh
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
+ |++- |+=+..||...+.+-..+.
T Consensus 224 ~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 224 Q--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 6 5775 8888899999887766654
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.79 Score=42.55 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
++.+.+.|.+.|-+...+-+. +.+ .-.+.|+.+++.|++|..-+..-+.. + .+
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-~----~~---------- 149 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-P----YE---------- 149 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-C----CC----------
Confidence 477888999999998655332 222 34579999999999876555543221 1 11
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..|++.+++.+++..++||+.|. |.|..|...+..+.++++.+
T Consensus 150 -----~~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 150 -----GEVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 112589999999999999999764 67888988888888777654
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.84 Score=43.81 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=90.8
Q ss_pred HHHHHHHhhcccccEEeecCcccc-cCCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~-l~~~-~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.+-+.|..+| ||.+=.|+..+. ..|. ..-++-++.+++ .++. +...+ .+ .+=++.+.+.|.+.|
T Consensus 72 ~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-----~~~l~--~n----~~die~A~~~g~~~v 138 (347)
T PLN02746 72 ELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-----FPVLT--PN----LKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCc-----eeEEc--CC----HHHHHHHHHcCcCEE
Confidence 4456677777 888888865432 1111 001222333332 2221 11111 12 355677888999999
Q ss_pred EecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. + .+. ..|++.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-p----~~~---------------r~~~~~ 198 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-P----IEG---------------PVPPSK 198 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-C----ccC---------------CCCHHH
Confidence 887433 23444443 369999999999884333332221 1 110 116999
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 199 l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 199 VAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 99999999999999874 68899999988888887665
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.1 Score=38.08 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=61.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
.+....++++...++||.+|+|+ ...++.. .+-|+..+++ ++++... ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 56788899999999999999964 2222221 2344445543 5655442 222 2 11234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
+.|=+..-+ +.+.-.++++.++++|.++.
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~~ 107 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEVQ 107 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeEE
Confidence 999987654 23455688999999887644
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.3 Score=44.67 Aligned_cols=145 Identities=11% Similarity=0.062 Sum_probs=102.3
Q ss_pred ccEEeecCcccccCChh-----------HHHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~-v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
+|.+-+-..+|-++-+. .+.+-|+.++++|.. +..|. |.+..-+++.+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35667777777666332 247788899999974 54443 44545555567889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
|-.--+.+.+-.++|+.+++. +... ..++. |+--|...-+-.+-..++|||
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~--------------------------H~HND~GlAvANslaAi~aGa 312 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSV--------------------------HCHNDLGLATANTIAGICAGA 312 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEe--------------------------cccCCcChHHHHHHHHHHhCC
Confidence 999999999999999999873 1000 01121 222244455777888899999
Q ss_pred cEEEEecccccccCCCccHHHHHHHHhc
Q 025344 200 DMIMIDSDDVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 200 ~~ViiEargi~d~~g~~r~d~i~~ii~~ 227 (254)
++|=.=--|+=+..||...+.+-..++.
T Consensus 313 ~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 313 RQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred CEEEEeccccccccCCccHHHHHHHHHh
Confidence 9985433488888999998877666654
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.1 Score=41.92 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHH
Q 025344 72 IEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVR 137 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~ 137 (254)
+..--++++..+|++.- .||-+ +..+.+.++...+.|.-.|-|-|.+. -+|.++..+-|+
T Consensus 62 ~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~ 135 (285)
T TIGR02317 62 AEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIA 135 (285)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHH
Confidence 33334456667787775 24543 12455677788899999999999653 368888888888
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCcc
Q 025344 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR 217 (254)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r 217 (254)
.+++.-- -++|-+- ..+ |. + .....++.|+++++..+||||.|.+|+- -.
T Consensus 136 Aa~~a~~--~~d~~Ii---ART----Da-----~--------~~~g~deAI~Ra~ay~~AGAD~vfi~g~--------~~ 185 (285)
T TIGR02317 136 AAVDAKR--DEDFVII---ART----DA-----R--------AVEGLDAAIERAKAYVEAGADMIFPEAL--------TS 185 (285)
T ss_pred HHHHhcc--CCCEEEE---EEc----Cc-----c--------cccCHHHHHHHHHHHHHcCCCEEEeCCC--------CC
Confidence 8877421 1333331 111 11 0 1124889999999999999999999972 13
Q ss_pred HHHHHHHHhccC
Q 025344 218 ADIIAKVIGRLG 229 (254)
Q Consensus 218 ~d~i~~ii~~l~ 229 (254)
.+.++++.++++
T Consensus 186 ~e~i~~~~~~i~ 197 (285)
T TIGR02317 186 LEEFRQFAKAVK 197 (285)
T ss_pred HHHHHHHHHhcC
Confidence 566777777765
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.6 Score=41.01 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=59.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.++++..+. .+++.++.+-+.+.+.|-.+-|.-. .++|+++++.|.+|++-++-
T Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G~p~------~~~i~~l~~~gi~v~~~v~s------------------- 145 (330)
T PF03060_consen 92 LELCIEEGV-PFEEQLDVALEAKPDVVSFGFGLPP------PEVIERLHAAGIKVIPQVTS------------------- 145 (330)
T ss_dssp HHHHHHTT--SHHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESS-------------------
T ss_pred HHHHHHhCc-ccccccccccccceEEEEeecccch------HHHHHHHHHcCCccccccCC-------------------
Confidence 445555552 2778888888889999999988643 36789999999888774332
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccc-cCCCccHHHHHHHHhccC
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCK-HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d-~~g~~r~d~i~~ii~~l~ 229 (254)
++.++..+++|||.||+|+- |=.. +.+ --..++.++.+.++
T Consensus 146 ----------------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~~ 190 (330)
T PF03060_consen 146 ----------------VREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAVD 190 (330)
T ss_dssp ----------------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH-S
T ss_pred ----------------HHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhcC
Confidence 77888899999999999985 2111 112 13455566655544
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.66 E-value=1 Score=40.70 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=90.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
..+-+.|..+| ||.+=+|+-+. .+. =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.|
T Consensus 23 ~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~i 86 (259)
T cd07939 23 LAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCEE
Confidence 34556677777 88888886442 221 12344444432 22211 11221 1344677889999999
Q ss_pred EecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-++..+-+.. . +.-.+.|+.+++.|+.|. |+..+. . ..+++.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~~~~ 140 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA---------S---------------RADPDF 140 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC---------C---------------CCCHHH
Confidence 9976443332 1 334578999999998653 444211 0 115899
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.+++..++|++.| .|+|..|...++.+.+++..+
T Consensus 141 ~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 141 LIEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999976 478999999999988888654
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.3 Score=34.83 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.++.+.+.-+++|=+- ...+...+.+-++.++++|+.+.++ ..++....+.++.+.++|.+.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3677676666666433 1224445788899999999987642 0011123344455577899999886
Q ss_pred CCc
Q 025344 122 VGS 124 (254)
Q Consensus 122 dGt 124 (254)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 654
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.60 E-value=1 Score=46.00 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.+++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. +.+-... +| .
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p-~------ 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SP-V------ 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC-C------
Confidence 58899999999999999999888776 445678999999998754 3331111 11 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999998888765
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.5 Score=44.08 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=117.8
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEeecCcccccCChhHHHHHHHHHHhCCcee----c-CCcHHH
Q 025344 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (254)
Q Consensus 24 ~GlT~V~----DkG~~~~~g~~~~~DlLe~ag-~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~-~Gtl~E 93 (254)
.-+.|.. =+||... .-.-.+..++.|. .-||++-+.-..+-+ +.++.-++.++++|-.+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 3466665 3566554 4445566666655 559999998876666 45888999999998844 2 3321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +...-.++.
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~--------------------- 205 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINL--------------------- 205 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEE---------------------
Confidence 2344567777788889999999999999999999999999999984 100111232
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|+-.|...-+......++|||+.|=.=-.|+=...|+..++.+-..++..+.+
T Consensus 206 -----H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 206 -----HCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred -----EeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 11112333477778889999996433334887788998888877777766643
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.43 E-value=3.1 Score=38.30 Aligned_cols=170 Identities=21% Similarity=0.250 Sum_probs=112.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 025344 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (254)
Q Consensus 20 KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~--~--~~~l~eKi~l~~~-~gV~v~~--G-tl 91 (254)
+-+..|++-+...|. .+..+...++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-. | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 346679999999997 5578888888888886 888899988887 3 5556677777765 3443322 3 21
Q ss_pred -H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 025344 92 -A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (254)
Q Consensus 92 -~----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~ 166 (254)
+ +.-.++- .|..+++.+++++...|==+-+ .. ..+++.+++.+. +--|+-...| |
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~----A~---~d~~~iL~~~~~---~~~gi~HcFs--G------ 159 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD----AH---EDTLEILKEEGA---PVGGVLHCFS--G------ 159 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc----cH---HHHHHHHHhcCC---CCCEEEEccC--C------
Confidence 1 3444555 7999999999999877654444 23 345555555443 2224432221 1
Q ss_pred cccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
| +++++++++.| .+|=+=+ -|+.++ ...+.+++..+|+++|+.|...|
T Consensus 160 ----------------s----~e~a~~~~d~G-~yisisG-~itfk~----a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 160 ----------------S----AEEARKLLDLG-FYISISG-IVTFKN----AEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred ----------------C----HHHHHHHHHcC-eEEEECc-eeecCC----cHHHHHHHHhCCHhHeEeccCCC
Confidence 1 88999999999 4443322 233333 34578899999999999997543
|
|
| >COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.86 Score=40.14 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
..+++.++.|+++||+.||++. +....+.++..++.+.++++|+++..--...+.. . ..+.. .
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~--~~~~~------------~ 78 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L--SPDEE------------E 78 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C--CCchh------------h
Confidence 4789999999999999999998 4444444458888899999999876644443210 1 01110 0
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.....+.+.+.++-.-+.||.+|++..-
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~vv~~~g 106 (274)
T COG1082 79 REEALEELKRAIELAKELGAKVVVVHPG 106 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 0112455555666677789998887763
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=92.33 E-value=2.7 Score=38.31 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.++++++++-+-|.+.+=+.-. +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 00111111220
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+.++.|++++..-++||+-|++=.
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEec
Confidence 11488899999999999999999875
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.67 Score=41.49 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHh
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~ 226 (254)
.+-++++.+....+++||+.|+| ||.||.++.- ...+.+|.+
T Consensus 184 ~~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~ 225 (230)
T PRK00230 184 AGDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILA 225 (230)
T ss_pred cchHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHH
Confidence 36778888999999999998866 8889888654 334444444
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.3 Score=38.85 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.. ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v------------------~----------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI------------------S----------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC------------------C-----------
Confidence 4779999999999988655555555 36668999999987 44333 11 0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccC---CCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~---g~~r~d~i~~ii~~l~ 229 (254)
++ +.+++..++|+++|.++.+|..... .....+.+.++.+.++
T Consensus 132 t~----~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ 177 (219)
T cd04729 132 TL----EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG 177 (219)
T ss_pred CH----HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC
Confidence 23 3356778899999998877654321 2233467777766553
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.9 Score=38.58 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=85.5
Q ss_pred chhHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~---v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++..+++.+ ..-+..+.|.+|--.+.+. |.+.++.+++. |+. +.+ |++ +++.++.+++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~d--l~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKD--IEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhh--HHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 456666666543 2347889999999877765 88999999986 652 344 544 2334567788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|++.|-||=-+++ -+.+..++.|+.+++.|+. |+-.+.+-.+.
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~------------------------- 212 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGF------------------------- 212 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCC-------------------------
Confidence 99999999965541 1236667889999999984 55544441110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+-|+..-.+|=-
T Consensus 213 -N~~Ei~~li~~a~~~gi~vr~ie~m 237 (373)
T PLN02951 213 -NDDEICDFVELTRDKPINVRFIEFM 237 (373)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 1344555555555688888777764
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.2 Score=38.12 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (254)
+.+..--++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|++. -+|.++-.
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444444566677787774 2343222 344556667799999999988752 25777777
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 134 ~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
+-|+.+++. +--++|-+- ..+ |. .|. ....++.|++++...+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I~---ART----Da---------~~~---~~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVVI---ARV----EA---------LIA---GLGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEEE---EEe----cc---------ccc---cCCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 778877775 122334441 111 11 111 113689999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC--CceEEec
Q 025344 214 DSLRADIIAKVIGRLGL--EKTMFEA 237 (254)
Q Consensus 214 g~~r~d~i~~ii~~l~~--~klifEA 237 (254)
....+.+.++.++++. .-++.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 3458889999988873 3335554
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=92.20 E-value=4.4 Score=36.45 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=63.2
Q ss_pred hHHHHHHHhhc-ccccEEeecCcc-cccCChhHHHH-----------------HHHHHHhC-CceecCCcHHHHHHHhCC
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQH-DVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~GT-~~l~~~~~l~e-----------------Ki~l~~~~-gV~v~~Gtl~E~a~~qg~ 100 (254)
..+.+++...- .-+|++=+|+=. -.+++-..++. .++..+++ ++++..=+.+...+..
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~-- 91 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY-- 91 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh--
Confidence 44444444333 349999999421 12444444443 33333432 3433211333444444
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.++.|++.|++.|++.|=+-| +|.++..++++.++++|+++..
T Consensus 92 -G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 -GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred -CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 389999999999999998864 5678888999999999888655
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.3 Score=38.89 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.++++++-+.|.+.|=+. || ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv---------------------- 74 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT---------------------- 74 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC----------------------
Confidence 67888999999999999873 33 689999999999998884 1 1111 122
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+.++.+++++..-++|||.|++=.
T Consensus 75 -----~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 75 -----GSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011478889999999999999999975
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=92.05 E-value=3.2 Score=38.08 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ ++
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v~----------------- 78 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---VG----------------- 78 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---cC-----------------
Confidence 678888899888 99998776543 689999999999988873 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP 238 (254)
..+..+.++.++..-++||+.|++=.--.+..+-+---+-...|++.+ ++.=+++-.|
T Consensus 79 ---~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 79 ---SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 114788899999999999999997554222211111122234445555 4555555555
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.9 Score=38.42 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999765433 589999999999998883 0 1111 111
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 229 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~ 229 (254)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+..+++.++.++.+
T Consensus 77 ----~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 77 ----GY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred ----CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 01 3677899999999999999998542 2466555 466777777764343
Q ss_pred CCceEE--e-cCCchhHHHHHHHhC
Q 025344 230 LEKTMF--E-ATNPRTSEWFIRRYG 251 (254)
Q Consensus 230 ~~klif--E-AP~k~qQ~~~I~~~G 251 (254)
+|+. + ..+-.+...+++.++
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~ 174 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLG 174 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcC
Confidence 2222 2 234444445555544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.65 Score=41.36 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCC--CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK--SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~--s~v~~~~d~~~~~~~~~~ 174 (254)
.+.+-++.++++||++||+..+.. +++..+..++-+.++++|+++.+ ++.-... ..... .|+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~-~~~~-------- 83 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMML-GDEH-------- 83 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccC-CCHH--------
Confidence 689999999999999999965421 34455677788889999998754 2210000 00000 0100
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
......+.+.+.++.+-..||..|++-+
T Consensus 84 ----~r~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 84 ----MRRESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 0011255666777788888999998855
|
|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.3 Score=39.45 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEEE
Confidence 799999999999999999964 23333 34667778899998663
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.5 Score=40.71 Aligned_cols=91 Identities=21% Similarity=0.349 Sum_probs=63.3
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.|.++..- .+.+++.|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-..... + +.+.
T Consensus 91 ~e~a~~na-------~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~----~---ggy~ 150 (263)
T TIGR00222 91 PEQALKNA-------ARVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVNI----L---GGYK 150 (263)
T ss_pred HHHHHHHH-------HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEee----c---CCee
Confidence 56655442 36677889999999998 556788999999999999887774221110 0 0011
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
. ...-..+.+++|+++++-.+|||+.|.+|+
T Consensus 151 ~----qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 151 V----QGKDEEAAKKLLEDALALEEAGAQLLVLEC 181 (263)
T ss_pred e----cCCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0 000012367999999999999999999998
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.1 Score=43.18 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=93.0
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (254)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ...+.-++.+.+.|.+.|-|
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4455677777 899999996544333333333333110 1233322 11 1111110 01245577888999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+ . -|. ...|++.++
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~----~---~Da--------------~r~d~~~l~ 161 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEH----F---FDG--------------YKANPEYAL 161 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Ecccc----c---ccc--------------ccCCHHHHH
Confidence 8765443222 22367888999988753 33310 0 010 012588899
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 162 ~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 162 ATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred HHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 999999999999886 89999999999888888655
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.1 Score=46.28 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 72 IEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 72 l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+++-+++++++|. .+..+ .|.+..-+++.+-++++.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +
T Consensus 212 ~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-------~ 282 (632)
T PLN02321 212 ARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-------T 282 (632)
T ss_pred HHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-------c
Confidence 6677889999986 34443 344444555678889999999999999999999999999999999999873 1
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
..- . ...+.-||--|...-+......++|||+.| |+- |+=+..||...+.+-..+..
T Consensus 283 ~~~---------~---------~v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 283 PGI---------E---------NVIISTHCQNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred CCC---------C---------CceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHHHHHHHh
Confidence 110 0 001122333455666888888999999984 775 77789999998887776654
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.7 Score=44.43 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.+++.+.+.|++.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 48889999999999999999777665 445678999999998654 4431111 110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999998888765
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=2.6 Score=39.04 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. ++-+.+. =+|.
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pv-i~gv----------------- 83 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPV-IAGA----------------- 83 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcE-EEec-----------------
Confidence 67888889999999999774433 589999999999988773 2211110 0000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccCCCc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 232 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~~~k 232 (254)
+. +..+.++.++..-++||+.|++=.- -+|+..| .+..+++.+|.++.+ +
T Consensus 84 -~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~p--n 159 (303)
T PRK03620 84 -GG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCP--N 159 (303)
T ss_pred -CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCC--C
Confidence 01 3678899999999999999998652 2466655 566777777774544 3
Q ss_pred eEE---ecCCchhHHHHHHHhCCC
Q 025344 233 TMF---EATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 233 lif---EAP~k~qQ~~~I~~~Gp~ 253 (254)
++. ..++..+...++++++++
T Consensus 160 i~giK~s~~d~~~~~~~~~~~~~~ 183 (303)
T PRK03620 160 LVGFKDGVGDIELMQRIVRALGDR 183 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCC
Confidence 433 345556666666666554
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=91.77 E-value=3.6 Score=37.89 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.+.++.+.+.|++.|=+.-. +..|+.++|.++++.+.+. ..-+.+ + +..
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-------~~g~~p---v-----------i~g----- 80 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST-------AKGKVP---V-----------YTG----- 80 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH-------hCCCCc---E-----------EEe-----
Confidence 6888899999999999987433 2689999999999988883 111100 0 000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccCCCc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 232 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~~~k 232 (254)
-+ .+..+-+++++..-++||+.|++=.- =+|+..| ++..+++.+|+++.+ +
T Consensus 81 v~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~--n 157 (296)
T TIGR03249 81 VG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCP--N 157 (296)
T ss_pred cC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCC--C
Confidence 00 13778899999999999999998552 1466555 667777887775555 2
Q ss_pred eEE---ecCCchhHHHHHHHhCCC
Q 025344 233 TMF---EATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 233 lif---EAP~k~qQ~~~I~~~Gp~ 253 (254)
|+. ..++-.+...++++++++
T Consensus 158 vvgiKds~~d~~~~~~~~~~~~~~ 181 (296)
T TIGR03249 158 LVGFKDGIGDMEQMIEITQRLGDR 181 (296)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCC
Confidence 222 345666666677766543
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.6 Score=44.18 Aligned_cols=135 Identities=22% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHhhcccccEE--eecCcccccCChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-HH
Q 025344 47 FESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FK 104 (254)
Q Consensus 47 Le~ag~yID~l--Kfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~--G-tl~E~a~~---------------qg~~~-~~ 104 (254)
|+..|+.+|=+ =|.+||+.-+|.+.++.-++.++++= -+... + .-+|-+.. -.|+. -+
T Consensus 127 l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~ 206 (522)
T TIGR01211 127 LEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCRE 206 (522)
T ss_pred HHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCH
Confidence 44567777633 38999999999999999999998761 11111 1 00222211 12333 47
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+.++.++++|++.||+--=|. --+.++-.+.++++++.||++...+ ..++ +|
T Consensus 207 e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GL--Pg-------------- 268 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGL--PG-------------- 268 (522)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCC--CC--------------
Confidence 899999999999999866555 2455666788999999999755544 3222 11
Q ss_pred CCccccccCHHHHHHHHHHHHH---cCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLE---AGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLe---AGA~~ViiEa 206 (254)
+|.+..++.++..++ .+.|.|-+-.
T Consensus 269 -------qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 -------SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred -------CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 146677888877774 7899887666
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.4 Score=37.94 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=81.1
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (254)
.+++|++|+|-++ +.+.+ |.+. +-+.|. .++.|. +-|. ..-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~--~~n~~-LL~~---~a~~gkPVilk~G~~~t~~e~---------~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARN--MQNFE-LLKE---VGKQGKPVLLKRGMGNTIEEW---------LYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECccc--ccCHH-HHHH---HhcCCCcEEEeCCCCCCHHHH---------HHHHHHHHHcCCCcEEEEECCC
Confidence 3679999999876 44444 3333 334565 445573 3332 2234555666775444422 45
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+- | .+--++.|..+++. ++. +|.- +....| + .+.....+...+.+||
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs~G---~-------------------r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHAAG---R-------------------RDLVIPLAKAAIAAGA 223 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCCCC---c-------------------cchHHHHHHHHHHcCC
Confidence 333 2 23445667777763 322 3331 111111 1 2334566778999999
Q ss_pred cEEEEec-----ccccccCCCccHHHHHHHHhcc
Q 025344 200 DMIMIDS-----DDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 200 ~~ViiEa-----rgi~d~~g~~r~d~i~~ii~~l 228 (254)
+-+|||. +...|..-.+..+.+.++++++
T Consensus 224 ~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 224 DGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 9999998 3678999999999999998753
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.9 Score=43.01 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-.. . +| .
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t---~------------~p-------~ 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISYT---V------------SP-------V 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEec---c------------CC-------C
Confidence 68899999999999999999877765 334568899999998654 333111 1 11 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-+++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I-----~i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSI-----CIKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCccCCcCHHHHHHHHHHH
Confidence 158889999999999999976 468899999998888888655
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.53 E-value=5.3 Score=36.63 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=92.7
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
..+-+.|..+| ||.+=+|+..+. |. ..+-++.+.+.+.....-+|. .. -.+.++.+.+.|.+.|-+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~~--~~~~~~~l~~~~~~~~v~~~~-----r~---~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--PQ--SRADCEAIAKLGLKAKILTHI-----RC---HMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--HH--HHHHHHHHHhCCCCCcEEEEe-----cC---CHHHHHHHHHcCcCEEEE
Confidence 35566778888 999999975432 32 455555555444321112332 22 234688888999999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.... ...+.++ -.++|+.+++.|++| .++..+.. -+ +++.+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~--------------r~----------~~~~l~ 144 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF--------------RS----------DLVDLL 144 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC--------------CC----------CHHHHH
Confidence 5432 2333333 456779999999764 44553211 11 377888
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++..++||+.| .+.|..|...++.+.++++.+
T Consensus 145 ~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 145 RVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 89999999999965 468889999999888888655
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.9 Score=38.70 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv----------------------- 76 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT----------------------- 76 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP 238 (254)
+..+..+.|++++..-++||+.|++-.--.+...-+---+-...|++.. ++.=+++-.|
T Consensus 77 ----~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 77 ----GALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred ----CcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 0124788899999999999999999885332221111112233444555 4555556555
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.2 Score=38.31 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+-+-.+ ++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~----------------- 78 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG----------------- 78 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC-----------------
Confidence 6888999999999 999888754 3579999999999988883 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+.++-++.++..-++|||.|++=.
T Consensus 79 ---~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ---SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11478889999999999999999944
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.89 Score=42.62 Aligned_cols=117 Identities=24% Similarity=0.405 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCceec------CCc-HHH-HHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 025344 72 IEEVVKRAHQHDVYVS------TGD-WAE-HLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~------~Gt-l~E-~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (254)
.++-++.++..++.+. ||. +|| +|+.-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 4567888899997543 574 666 4555441 221 45554 68889998888877 455889999885
Q ss_pred -CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHH
Q 025344 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 221 (254)
Q Consensus 143 -G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i 221 (254)
+|.++-|+=+. + .+++.+.++||||.||.+ |+..+.+
T Consensus 185 ~~~~~kIEVEve-----------------------------s----le~~~eAl~agaDiImLD---------Nm~~e~~ 222 (280)
T COG0157 185 APFTKKIEVEVE-----------------------------S----LEEAEEALEAGADIIMLD---------NMSPEEL 222 (280)
T ss_pred CCCCceEEEEcC-----------------------------C----HHHHHHHHHcCCCEEEec---------CCCHHHH
Confidence 56665665551 1 778889999999999994 7778888
Q ss_pred HHHHhccC-CCceEEecC
Q 025344 222 AKVIGRLG-LEKTMFEAT 238 (254)
Q Consensus 222 ~~ii~~l~-~~klifEAP 238 (254)
.+.++.++ ..+++-||.
T Consensus 223 ~~av~~l~~~~~~~lEaS 240 (280)
T COG0157 223 KEAVKLLGLAGRALLEAS 240 (280)
T ss_pred HHHHHHhccCCceEEEEe
Confidence 88877666 557788876
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.1 Score=44.68 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred ccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++.+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 33558889999999876654 3444444556788889999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.++++ +.- ...+++ |+-.|...-+..+...++|||+
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~--------------------------H~HND~GlAvANalaAv~aGa~ 220 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSV--------------------------HCHNDLGLAVANSLAAVQNGAR 220 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEE--------------------------EeCCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999873 110 011222 3333455568888889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHHh
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
. ||+- |+=+..||...+.+-..+.
T Consensus 221 ~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 221 Q--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 5 5775 8878899998887766554
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.8 Score=37.74 Aligned_cols=108 Identities=18% Similarity=0.296 Sum_probs=63.4
Q ss_pred HHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 025344 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 47 Le~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
+..+| ++.++ ++-.+ +.+.+.+.++..++.- .++..+.++ +.+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33344 56665 22223 4455666677666542 211111111 111 26889999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
.+ .++++.+++.++.+.+ + + . + .+++++..++||++|++
T Consensus 90 --~~----~~~~~~~~~~~i~~i~----~-----v------------~----------~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 90 --PP----AEVVERLKAAGIKVIP----T-----V------------T----------S----VEEARKAEAAGADALVA 128 (236)
T ss_pred --CC----HHHHHHHHHcCCEEEE----e-----C------------C----------C----HHHHHHHHHcCCCEEEE
Confidence 22 3466667766554322 1 0 0 1 24556667899999999
Q ss_pred ecc
Q 025344 205 DSD 207 (254)
Q Consensus 205 Ear 207 (254)
.+.
T Consensus 129 ~~~ 131 (236)
T cd04730 129 QGA 131 (236)
T ss_pred eCc
Confidence 886
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.5 Score=42.34 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCc
Q 025344 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~G~~ 145 (254)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.|.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 345555566666666554332 3346889999999999999999766554222 1456677777775544
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 146 v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|+. |. + . + .+.+++.+++|||.|++ ++
T Consensus 190 VIa--G~------V-----------~-----------t----~e~A~~l~~aGAD~V~V-G~ 216 (368)
T PRK08649 190 VIV--GG------C-----------V-----------T----YTTALHLMRTGAAGVLV-GI 216 (368)
T ss_pred EEE--eC------C-----------C-----------C----HHHHHHHHHcCCCEEEE-CC
Confidence 422 11 1 1 1 55677778899999999 66
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=91.33 E-value=8 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.4
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG-F~~ 117 (254)
.+..+.++++.+..++..+-|.+|-..+.++ +.+-++.+++.|+.++.= +.| ..+++++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~-------TNg--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLD-------TNG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEE-------eCC--CCHHHHHHHHhcCCCcE
Confidence 5678888888888889999999999888775 899999999999855431 122 1234556666778 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 025344 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (254)
|-||-... + + .. +.-.+.|+.++++|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 145678888999887644
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=6 Score=36.51 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=81.0
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCC
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVG 123 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdG 123 (254)
+.+++|++|+|-++ +.+.+.|++- -+.|. .+..|+ +-|..-. .+.++.-|-. .+=+--|
T Consensus 107 l~~~vd~~kIga~~--~~n~~LL~~~----a~~gkPV~lk~G~~~s~~e~~~A---------~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 107 VADYADMLQIGSRN--MQNFELLKEV----GKTKKPILLKRGMSATLEEWLYA---------AEYIMSEGNENVVLCERG 171 (266)
T ss_pred HHHhCCEEEECccc--ccCHHHHHHH----hcCCCcEEEeCCCCCCHHHHHHH---------HHHHHhcCCCeEEEEECC
Confidence 34779999999877 4554434433 34555 444573 3332211 2334555553 2223333
Q ss_pred cccC----ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 124 SLEI----PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 124 ti~i----~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
+-+. +..--++.|...++. ++ | +++- +...+| ..+.....+...+.+|
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~---p-V~~D-~sHs~G----------------------~~~~v~~~~~aAva~G 224 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHL---P-IIVD-PSHATG----------------------RRELVIPMAKAAIAAG 224 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCC---C-EEEe-CCCccc----------------------chhhHHHHHHHHHHcC
Confidence 3112 333455667777764 32 2 4442 111221 2345677899999999
Q ss_pred CcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 199 A~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
|+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 225 a~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 225 ADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 999999983 678999999999999998754
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.7 Score=39.03 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFK 104 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-----~~~ 104 (254)
+.++..+++ =+|.+-+-..+|-.+.+ +.+++-+++++++|+.+..+- |-+..-.++ -+.
T Consensus 78 ~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~ 152 (279)
T cd07947 78 EDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVN 152 (279)
T ss_pred HHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHH
Confidence 455555554 34555555555544433 236678889999998655421 323322221 466
Q ss_pred HHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 105 EYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 105 ~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
++++.+.+.|.+ .|=+.|-.--..+ ++=.++++.+++. ++ +-.+++.
T Consensus 153 ~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~----------------------- 208 (279)
T cd07947 153 KLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEW----------------------- 208 (279)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEE-----------------------
Confidence 667777779999 6888887764444 4455888888763 11 1112333
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc-CC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL-GL 230 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l-~~ 230 (254)
|+-.|...-+..+...++|||++ +++. |+=+..||..++.+-..+..+ |.
T Consensus 209 ---H~Hn~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~ 261 (279)
T cd07947 209 ---HGHNDFYKAVANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQLKGN 261 (279)
T ss_pred ---EecCCCChHHHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHhcCC
Confidence 22223455588888899999997 5664 888999999999888777665 53
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.2 Score=42.67 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=105.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++.+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 2 5678888888766422 33566678999999865542 1334344455677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+.|-+.|-+.|-.--+.+.+-.++|+.+++. +.+ .+++ |+-.|...-+-.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~v--~l~~--------------------------H~HND~GlAvAN 203 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VKG--PVSI--------------------------HCHNDFGLAVAN 203 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cCC--eEEE--------------------------EecCCccHHHHH
Confidence 99999999999999999999999999998874 222 2333 112234455788
Q ss_pred HHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
+...++|||+. ||+- |+=+..||...+.+-..+..
T Consensus 204 alaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 204 TLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 88899999996 6775 88889999998877766654
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.2 Score=40.80 Aligned_cols=73 Identities=32% Similarity=0.423 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++. ++ | +.+|..
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---P-v~vKl~---------------- 162 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---P-VIVKLT---------------- 162 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---C-EEEEeC----------------
Confidence 455666677788999999975542 23345556788888875 22 2 444421
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
| +.++..+.++...++||+.|.+
T Consensus 163 -~---------~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 163 -P---------NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEE
Confidence 1 2345677788888999998876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.13 E-value=4.5 Score=36.95 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.7
Q ss_pred hHHHHHHHhhccc-ccEEeecCcc--------cccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT--------~~l~~~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.+..+.+-++ +|++=+-++| +.....+.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 3445667788999999888 7766642 11 11246677888
Q ss_pred HHHcCCCEEEecCCcc
Q 025344 110 CKQVGFDTIELNVGSL 125 (254)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (254)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999987543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.8 Score=38.40 Aligned_cols=102 Identities=20% Similarity=0.097 Sum_probs=62.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec--------------CCc
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~--------------~Gt 90 (254)
++..+.+=|+ . ....++.+++. -+|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~---G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA---GADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc---CCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3455555554 2 34555666653 25554 5678888888888888787765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHH
Q 025344 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKS 141 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~ 141 (254)
|.+. ......++.+.+.+.|++.|.+++=+ ..-. ..++++++++
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~ 190 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSS 190 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHh
Confidence 4332 12357788899999999999996522 2222 2466777766
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=7.2 Score=35.66 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=103.7
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~--~~~l~eKi~l~~~~gV~v~~---G-tl~--- 92 (254)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- ...+.+..+++....| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999997 567888888888887 35777888776442 3335554455543333 222 3 222
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
....++. -|...++.++++|...+==+-+.. .++++.+++.+... .-++-... .|
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~~--~~~v~H~f--sG----------- 159 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVTD--CGGVLHCF--TE----------- 159 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCCC--CCEEEEee--cC-----------
Confidence 1233444 799999999999988875444322 25555555544321 11231111 11
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+- |... .-+.+.+.++++.+|+++|+.|...|
T Consensus 160 -----------~----~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P 207 (265)
T PRK10812 160 -----------D----RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSP 207 (265)
T ss_pred -----------C----HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCC
Confidence 1 66788888888766443 2210 12456788899999999999998755
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.1 Score=43.10 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=87.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V~v~~Gtl~E~-a~~qg-~~~~~~yl~~~k~lGF~ 116 (254)
.+-+.|..+| ||.+-.||-.+. |. -.+-++.+.+.. ...+.+....+ ++.+- .+.++.-++..++-|.+
T Consensus 110 ~Ia~~L~~~G--Vd~IEvG~Pa~s--~~--e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~ 183 (503)
T PLN03228 110 EIARQLAKLR--VDIMEVGFPGSS--EE--EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKRP 183 (503)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCC--HH--HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCCC
Confidence 4566777777 888888883322 22 233333333321 11111211111 22221 00133333323344778
Q ss_pred EEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-|.-.+-++-.+.+ .+.|+.++++|+.. .+|+-.+. +-.|+
T Consensus 184 ~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~EDa------------------------~Rtd~ 238 (503)
T PLN03228 184 RILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCEDG------------------------GRSDK 238 (503)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccccc------------------------cccCH
Confidence 8887665554443322 67889999999861 23444211 01158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.+.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 239 efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 239 EFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred HHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 889999999999999986 478999999998888887654
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.6 Score=39.52 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=51.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFK 104 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~------gV----~v~~Gtl~E~a~~qg~~~~~ 104 (254)
..+..+++.++++.|++=+-+++-. ....+.+.+.++..++. ++ ++.|+ +- .. .+.
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~~ 219 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--ELE 219 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HHH
Confidence 4566666777778888888775543 33445666666666542 13 33343 11 11 466
Q ss_pred HHHHHHHHcCCCEEEecCCcccC
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i 127 (254)
+..+.|.+.|.+.|.+++.+..+
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccc
Confidence 77788899999999999987654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.9 Score=39.35 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 135 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~l 135 (254)
+.+..--++++..++++.- + ||-+.. .+.+.++...+.|.-.|-|-|... -+|.++..+=
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3344445666777887774 2 342211 244556777899999999998764 2688888777
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 215 (254)
|+.+++.-= -++|-+- ..+ |. + ...+.++.|+++++..+||||.|.+|+-
T Consensus 138 I~Aa~~A~~--~~d~~I~---ART----Da-----~--------~~~g~deaI~Ra~aY~eAGAD~ifi~~~-------- 187 (294)
T TIGR02319 138 IEAAVEARE--DEDFTII---ART----DA-----R--------ESFGLDEAIRRSREYVAAGADCIFLEAM-------- 187 (294)
T ss_pred HHHHHHhcc--CCCeEEE---EEe----cc-----c--------ccCCHHHHHHHHHHHHHhCCCEEEecCC--------
Confidence 777776311 1334441 111 11 0 1125889999999999999999999962
Q ss_pred ccHHHHHHHHhccCC
Q 025344 216 LRADIIAKVIGRLGL 230 (254)
Q Consensus 216 ~r~d~i~~ii~~l~~ 230 (254)
...+.+.++.+.++.
T Consensus 188 ~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 188 LDVEEMKRVRDEIDA 202 (294)
T ss_pred CCHHHHHHHHHhcCC
Confidence 246778888888763
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=90.90 E-value=8.8 Score=33.40 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=77.5
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 025344 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (254)
Q Consensus 83 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~ 162 (254)
+|++-.+++ . .-...++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-------i--~~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-------I--IDPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-------e--cCHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 777776541 1 1224799999999999998544 455577778999998887776544421
Q ss_pred cccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC-CceEEecCCch
Q 025344 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR 241 (254)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~-~klifEAP~k~ 241 (254)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -.++-+.=-.+
T Consensus 131 -------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~pvia~gGI~s 183 (217)
T cd00331 131 -------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDVILVSESGIST 183 (217)
T ss_pred -------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 3447777889999998876532211 2334777777776642 24555544332
Q ss_pred -hHHHHHHHhCCC
Q 025344 242 -TSEWFIRRYGPK 253 (254)
Q Consensus 242 -qQ~~~I~~~Gp~ 253 (254)
.+..-+...|.+
T Consensus 184 ~edi~~~~~~Ga~ 196 (217)
T cd00331 184 PEDVKRLAEAGAD 196 (217)
T ss_pred HHHHHHHHHcCCC
Confidence 455555555543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=3 Score=37.16 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
..-.+.++.++++||.+.|| |.-|+.-. .++|++.|-+==...-= -.++|+.++. ++
T Consensus 84 ~~~~~vi~~a~~~~i~~iPG~~TptEi~~A-------------~~~Ga~~vK~FPa~~~G----G~~yikal~~----pl 142 (201)
T PRK06015 84 GTTQELLAAANDSDVPLLPGAATPSEVMAL-------------REEGYTVLKFFPAEQAG----GAAFLKALSS----PL 142 (201)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECCchhhC----CHHHHHHHHh----hC
Confidence 45677889999999999998 78888754 46899999885322100 1367777666 56
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc
Q 025344 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (254)
Q Consensus 148 ~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~ 212 (254)
|.+-.. .+| + ++ .+.+..+|+||+..+.. +.-++++
T Consensus 143 p~~~l~----ptG--G-------V~---------------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 143 AGTFFC----PTG--G-------IS---------------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred CCCcEE----ecC--C-------CC---------------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 654442 111 1 11 46889999999998887 7767654
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.77 E-value=13 Score=33.97 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred hHHHHHHH-hhcccccEEeecCccc-ccCChhH-----------------HHHHHHHHHhC--CceecCC-cHHHHHHHh
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPF-----------------IEEVVKRAHQH--DVYVSTG-DWAEHLIRN 98 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~-----------------l~eKi~l~~~~--gV~v~~G-tl~E~a~~q 98 (254)
..+.+++. ....-+|++=+|+=.| .+.+-.. +-+-++-.+++ ++++. - +...-.+..
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~ 102 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhh
Confidence 44555333 3445699999998321 1111111 22333334433 55444 3 555555555
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++|++.|++.|++.|=|=| +|.++..++++.++++|+.+..=+.-.
T Consensus 103 ---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P~------------------------- 150 (256)
T TIGR00262 103 ---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAPN------------------------- 150 (256)
T ss_pred ---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECCC-------------------------
Confidence 489999999999999998875 577888999999999988765422220
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHH---HHHHhccCCCceEEecCCc-hhHHHHHHHhCCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII---AKVIGRLGLEKTMFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i---~~ii~~l~~~klifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
++.++++.+.+. ..|--++|- ..|++.....+..++. ..+-+..+. .|+.+-=-+ ..|+--+..+|.|
T Consensus 151 ----T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~vgfGI~~~e~~~~~~~~GAD 222 (256)
T TIGR00262 151 ----ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSAK-PVLVGFGISKPEQVKQAIDAGAD 222 (256)
T ss_pred ----CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcCC-CEEEeCCCCCHHHHHHHHHcCCC
Confidence 123334444332 234444443 2366655444444433 322222222 466665544 5566666666654
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.7 Score=38.62 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=71.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.|+.|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999665554 46778889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 238 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP 238 (254)
-+.+++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESG 210 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESG 210 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCC
Confidence 3456677999999999999976432 4456667778888886655 44443
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=40.44 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=67.9
Q ss_pred CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHH
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLR 134 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~ 134 (254)
.|+..+-..+.+.+.++-.++. ++++.. +||-+ +.....++.+.+.+.|.+.|-|+..+.. .+..-..+
T Consensus 108 ~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~ 182 (319)
T TIGR00737 108 AGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWD 182 (319)
T ss_pred ccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHH
Confidence 3444555677788888887653 454432 34532 2124678899999999999999865432 22122357
Q ss_pred HHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH-HcCCcEEEEecccccc
Q 025344 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 211 (254)
Q Consensus 135 lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL-eAGA~~ViiEargi~d 211 (254)
+++.+++. +.+. . ++ .++ +.| .+.+.+.| +.|||.||+ ||+++.
T Consensus 183 ~i~~i~~~-------~~ip--v--i~-nGg----------------I~~----~~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 183 IIARVKQA-------VRIP--V--IG-NGD----------------IFS----PEDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred HHHHHHHc-------CCCc--E--EE-eCC----------------CCC----HHHHHHHHHhhCCCEEEE-Chhhhh
Confidence 78888773 2221 1 01 011 113 45566666 579999999 887653
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.6 Score=37.92 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v 159 (254)
.+-+..+.|++.|||.|||.-+.--| +.+.| +++|+.+++. +..-.-+++|....+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~ 220 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhcc
Confidence 44555566777999999998752111 11234 4556666653 1011124554322110
Q ss_pred CCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 160 PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 160 ~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+. -.+.++.++.++..-++|+++|-+=++
T Consensus 221 ------------~~~------g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 221 ------------VPG------GLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred ------------CCC------CCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 001 125788899999999999999987554
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.5 Score=41.17 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=77.3
Q ss_pred HHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHc
Q 025344 77 KRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 77 ~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~ 142 (254)
+++..-+|++.- + ||-+ +..+.+.++...+.|.-+|-|-|.. --+|.++...=|+.+++.
T Consensus 72 ~I~~~~~iPviaD~d~GyG~------~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 72 RITDACDLPLLVDIDTGFGG------AFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 344555677664 2 4432 2356677788889999999998854 236888888888888774
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHH
Q 025344 143 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 222 (254)
Q Consensus 143 G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~ 222 (254)
-- -++|-+- ..+ |. + .....++.|+++++..+||||.|.+|+- -..+.+.
T Consensus 146 ~~--~~d~~Ii---ART----Da-----~--------~~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~ 195 (292)
T PRK11320 146 RT--DPDFVIM---ART----DA-----L--------AVEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYR 195 (292)
T ss_pred cc--CCCeEEE---Eec----Cc-----c--------cccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHH
Confidence 11 1333331 111 11 0 0125899999999999999999999972 1366777
Q ss_pred HHHhccC
Q 025344 223 KVIGRLG 229 (254)
Q Consensus 223 ~ii~~l~ 229 (254)
++.+.++
T Consensus 196 ~~~~~~~ 202 (292)
T PRK11320 196 RFADAVK 202 (292)
T ss_pred HHHHhcC
Confidence 7777665
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.6 Score=41.82 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=60.3
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-..... ++.+ +-...-.....++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~-------lGGy----kvqGr~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQAISV-------LGGF----RPQGRTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccceeehh-------hcCc----cccCCCHHHHHHH
Confidence 34477899999999997 567899999999999999999985221110 0000 0000011236789
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 025344 188 IRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEa 206 (254)
++.++.--+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.40 E-value=2 Score=38.93 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+.+..+.+.+.|+++|||+-++-.. ..+.-.++++.+++. +..-+.+|-..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~----------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA---VDIPLLVKLSP----------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc---cCCCEEEEeCC-----------------
Confidence 45566777788899999998775432 234556788888873 11114555221
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
..+.++.++.++...++|||.|.+-.+
T Consensus 172 -------~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 172 -------YFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred -------CCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 013667889999999999999998765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.2 Score=39.19 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv----------------------- 77 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT----------------------- 77 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 6888999999999999987544 3489999999999988773 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..++.+.+++++..-++|||.|++-.-
T Consensus 78 ----~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 78 ----GSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ----CCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0114788899999999999999999775
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.7 Score=38.16 Aligned_cols=141 Identities=23% Similarity=0.339 Sum_probs=88.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG----F 115 (254)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .|. +. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l~-----r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GLA-----RA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EEc-----cC---CHhhHHHHHHhCCCCCC
Confidence 3344556666 7788887643 233332 555555543 33222 111 21 133345555556 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
+.|-+....-+ .+. +.-.++|+.+++.|++|. |+..+. + ..|
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~ 141 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA---------T---------------RTD 141 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC---------C---------------CCC
Confidence 99999775422 222 344578999999998755 443211 0 015
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
++.+.+.+++..++|++.| .+.|..|...++.+.++++.+-
T Consensus 142 ~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999876 4789999999999988886653
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.1 Score=35.53 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
|+.++++||+.||++-....... ++..++.+.++++|+++.+=-...+.........++ ..+ ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~-----~~~------r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA-----NDE------REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS-----SSH------HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc-----chh------hHHH
Confidence 57899999999999987765554 577899999999999965533332221110000000 000 1112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+.+.+.++..=..|+..|++-+-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCceeecCc
Confidence 555666666666679999999854
|
1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B .... |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.7 Score=36.59 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCcEEEEecccccccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
.+.+++.+++||+-|+|=+ .||+..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 4566777899999999844 355443
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=5.2 Score=38.51 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=81.7
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
.-|+-+=||+||..+++.+.|++.++.++++= ...+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45889999999999999999999999998751 11111 13333333332 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
.-+.++-.+.|+.+++.+..|- +..-.+. + + ++.+.+.+.++..++.+.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl--P---g------------------qt~~~~~~~l~~~~~l~p~ 203 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL--P---G------------------QTLDEALADVETALAFGPP 203 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC--C---C------------------CCHHHHHHHHHHHHhcCCC
Confidence 1234455567777777533222 2222221 1 1 1478888889999999998
Q ss_pred EEE
Q 025344 201 MIM 203 (254)
Q Consensus 201 ~Vi 203 (254)
.|-
T Consensus 204 ~is 206 (394)
T PRK08898 204 HLS 206 (394)
T ss_pred EEE
Confidence 763
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.64 Score=42.86 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC----------hhHH
Q 025344 70 PFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----------EETL 132 (254)
Q Consensus 70 ~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r 132 (254)
..+.|.++-.++. ++ ++.++.+.+--+.. +...++++.+.++|.+.|+||.|+..-+ ....
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~--~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL--EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH--HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 4456666666653 32 33443222111111 1456677888899999999999986432 2344
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc-CCcEEEEeccccc
Q 025344 133 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVC 210 (254)
Q Consensus 133 ~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA-GA~~ViiEargi~ 210 (254)
.++++.+++. +++ +..-.| .+. + .+.+++.|++ |||.|.+ +|.++
T Consensus 270 ~~~~~~ir~~-------~~i--PVi~~G--------gi~-----------t----~~~a~~~l~~g~aD~V~i-gR~~l 315 (327)
T cd02803 270 LELAEKIKKA-------VKI--PVIAVG--------GIR-----------D----PEVAEEILAEGKADLVAL-GRALL 315 (327)
T ss_pred HHHHHHHHHH-------CCC--CEEEeC--------CCC-----------C----HHHHHHHHHCCCCCeeee-cHHHH
Confidence 5667777663 222 110011 111 2 5567777888 7999998 67654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=14 Score=34.57 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.-+.++.|-+.||+.|=+. |+- +|.++-. ++.+.++..|.-|--|+|. +|..++.. ...+.. .
T Consensus 86 ~~e~i~~Ai~~GftSVm~D-~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v---~~~~~~--~ 152 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMFD-GST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGA---LYGEAD--S 152 (286)
T ss_pred CHHHHHHHHHhCCcEEEEc-CCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCc---ccCCcc--c
Confidence 3466778889999999994 442 4544443 4667788899888888887 22222210 000000 0
Q ss_pred ccccCHHHHHHHHHHHH-HcCCcEEEEecc----cccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCL-EAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dL-eAGA~~ViiEar----gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..-.+| ++++++. +.|+|++=+ += |.|+..-.++-+.+.+|-+.++
T Consensus 153 ~~~T~p----e~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~ 203 (286)
T PRK06801 153 AKFTDP----QLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTG 203 (286)
T ss_pred ccCCCH----HHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 001134 5555555 579999999 63 7898766799999999987765
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=3.6 Score=36.39 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+.+.+.++++|.+.|-+-+.--.++.++-.++++.+++.|+.++.
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE
Confidence 455888899999999888875667788888899999999888774
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.9 Score=39.57 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.+.+..+.+++.| ||+|||+-++-. -..+...++|+.+++.- -+| +.+|-
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl----------------- 164 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKL----------------- 164 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEc-----------------
Confidence 4556667778889 999999654322 23456678888888752 112 44541
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +.++.++.++...++||+.|.+
T Consensus 165 ~~---------~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 165 TP---------NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CC---------CchhHHHHHHHHHHcCCCEEEE
Confidence 11 2446677888888999998875
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=4.8 Score=40.31 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.|++.+.+.|++.+-|-|..-++ +.-...|+.+++.|..+..-+... . +|
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~--~n~~~ai~~ak~~G~~~~~~i~yt--~-------sp--------------- 158 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDP--RNIQQALRAVKKTGKEAQLCIAYT--T-------SP--------------- 158 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCH--HHHHHHHHHHHHcCCEEEEEEEEE--e-------CC---------------
Confidence 468899999999999999999976644 444578999999998765323321 1 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.-+.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHHH
Confidence 11578889999999999999774 688999999999999987763
|
|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.7 Score=38.74 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 34455 799999999999999999954 222 2455666677899999753
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=89.50 E-value=5.5 Score=37.20 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=72.8
Q ss_pred chhHHHHHHHhhc-ccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag-~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~q---g~~~~~~yl~~~k~ 112 (254)
++.++.+.++.+. .-++-+=|..|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4444444443222 2266677777877677788888999999987643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCcccce
Q 025344 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 99987641 1 1111 347889999999999999987653
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=89.50 E-value=3.2 Score=38.21 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+++| +.+++..|=|+|=+-... ++.++..++++.+.+.||.++.|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3344 678999999999887665 45677789999999999999999876
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~k-lifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
-+.+++.+++||+.|-|..|.+-. -++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|
T Consensus 168 ------~~El~~al~~~a~iiGINnRdL~t--f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~d 233 (254)
T PF00218_consen 168 ------EEELERALEAGADIIGINNRDLKT--FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGAD 233 (254)
T ss_dssp ------HHHHHHHHHTT-SEEEEESBCTTT--CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-S
T ss_pred ------HHHHHHHHHcCCCEEEEeCccccC--cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCC
Confidence 345667789999999999996632 2344556677887777544 34454433 3555566666543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.8 Score=40.99 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=53.0
Q ss_pred hhHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhC-C-----ceec----CCcHHHHHHHhCCchH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYVS----TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~-g-----V~v~----~Gtl~E~a~~qg~~~~ 103 (254)
...+..+++.+++|.|++=+-+++-. ....+.+.+.++-.++. + ++|. |+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777788888889999888775543 23344566666666652 2 4333 330 11 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (254)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 77888889999999999999854
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=8 Score=34.63 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCce---------------ecCC
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~---------------v~~G 89 (254)
.++.+.+=|+ . ....++.+++. | .|. +..||+.+-+++.+++-.+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi--~-s~~~~~~~l~~-G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGI--R-SVEDARRLLRA-G--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 4666666665 2 34666666763 3 444 466788888888887766655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccc
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRD 164 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d 164 (254)
+|.+. .. ....++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++. ...++..-|+
T Consensus 146 ~~~~~--~~--~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv------------ 206 (253)
T PRK02083 146 GGRKP--TG--LDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGA------------ 206 (253)
T ss_pred CCcee--cC--CCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCC------------
Confidence 34432 12 25778899999999999888 457777664 4566666653 2333332222
Q ss_pred cccccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 165 RAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.|++++.+ .++ .||+-||+=. .-..|.+.-..+-+.+++-|
T Consensus 207 -----------------~s~~d~~~----~~~~~G~~gvivg~---al~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK02083 207 -----------------GNLEHFVE----AFTEGGADAALAAS---IFHFGEITIGELKAYLAEQG 248 (253)
T ss_pred -----------------CCHHHHHH----HHHhCCccEEeEhH---HHHcCCCCHHHHHHHHHHCC
Confidence 24445444 444 6999999832 22234555555555555444
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.45 E-value=13 Score=34.88 Aligned_cols=148 Identities=16% Similarity=0.286 Sum_probs=89.6
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH--
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR-- 134 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~-- 134 (254)
+-++-|+...++.+...--..+++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t 111 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALT 111 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH
Confidence 44444444444545455555677777776663 11122 11344666778999999987665 56666544
Q ss_pred --HHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc-CCcEEEE---eccc
Q 025344 135 --YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMI---DSDD 208 (254)
Q Consensus 135 --lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA-GA~~Vii---Earg 208 (254)
+++.++..|..|--|+|. -+..+.+...+.. ...++ | .++++++.+. |+|++-+ -+-|
T Consensus 112 ~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~-~~~~t----------~----peea~~f~~~TgvD~LAvaiGt~HG 175 (283)
T PRK08185 112 KEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVS-EIIYT----------D----PEQAEDFVSRTGVDTLAVAIGTAHG 175 (283)
T ss_pred HHHHHHHHHcCCeEEEEEee-ccCcccccccccc-cccCC----------C----HHHHHHHHHhhCCCEEEeccCcccC
Confidence 555667889999999988 2221110000000 00011 3 5666778877 9999988 3358
Q ss_pred cccc--CCCccHHHHHHHHhccCC
Q 025344 209 VCKH--ADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 209 i~d~--~g~~r~d~i~~ii~~l~~ 230 (254)
+|.. .-+++-+.+.+|-+.++.
T Consensus 176 ~y~~~~kp~L~~e~l~~I~~~~~i 199 (283)
T PRK08185 176 IYPKDKKPELQMDLLKEINERVDI 199 (283)
T ss_pred CcCCCCCCCcCHHHHHHHHHhhCC
Confidence 9977 567889999999877653
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.43 E-value=3.9 Score=35.50 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. .. .-+.+|...
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~------------ 132 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRL------------ 132 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEee------------
Confidence 455556667788999999997651 12333345667777653 10 124444211
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhccC
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l~ 229 (254)
.|. +.++.++.++..-++|+++|.+-++.-.. ..+....+.+.++.+.++
T Consensus 133 ------~~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 133 ------GWD-----DEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred ------ccC-----CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 111 01356777777788999999998762211 123334566666655443
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=89.42 E-value=3.4 Score=45.54 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++|++.+.+.|++.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -|+. + ..
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~~--------~----~~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDPA--------R----AK 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCCC--------C----CC
Confidence 57889999999999999999988886 446678999999998655555552 111 1221 1 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.++.-.++||+.| .|.|..|-+.+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i-----~ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHIL-----AIKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCccCCCCHHHHHHHHHHH
Confidence 268999999999999999966 468889999998888888655
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.35 E-value=4.8 Score=38.66 Aligned_cols=142 Identities=21% Similarity=0.320 Sum_probs=92.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|-|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 3455666777 78888886442 222 23445555555554222233 11 12445778888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-++ +. +.-.+.|+.+++.|+.| .|+-.+. . ..|++.+++
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~---------~---------------r~~~~~l~~ 149 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDA---------S---------------RTDLDFLIE 149 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccC---------C---------------CCCHHHHHH
Confidence 765443 22 33345888999999874 3332110 0 115899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.|. ++|..|...+..+.+++..+
T Consensus 150 ~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 150 FAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 99999999999764 68999999999888888655
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.7 Score=40.30 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
.+.....++..+.+|||-+|||.- -++|..-.+..+.++++++.+
T Consensus 200 r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 200 REFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 566678888899999999999994 789999999999999998765
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=89.21 E-value=9 Score=36.94 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHH
Q 025344 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLV 139 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~----G-t----l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~ 139 (254)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=|.-.. +|.++= .+++++|
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHH
Confidence 3344688899998874 5 3 68888765 4689999999999999776544 455443 3667888
Q ss_pred HHcCCcccceeeeecCCCCCCCccccc-cccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEe---cccccc-cC
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRA-FGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMID---SDDVCK-HA 213 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~-~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiE---argi~d-~~ 213 (254)
...|.-|--|+|.--+. +-+...+.. -...+| ||++..+.+++--. -|.|.+=+= +-|+|. ..
T Consensus 151 h~~gvsVEaElG~igg~-ed~~~~~~~~~~~~yT----------dPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~ 219 (345)
T cd00946 151 AKINMWLEMEIGITGGE-EDGVDNSGVDNAELYT----------QPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGN 219 (345)
T ss_pred HHcCCEEEEEecccCCc-ccCcccccccccccCC----------CHHHHHHHHHHhccCCCceeeeeeccccccCCCCCC
Confidence 89999999999984221 111000000 001122 55554444433111 277755432 239998 47
Q ss_pred CCccHHHHHHH
Q 025344 214 DSLRADIIAKV 224 (254)
Q Consensus 214 g~~r~d~i~~i 224 (254)
-+++-+.+++|
T Consensus 220 p~L~~~~L~~I 230 (345)
T cd00946 220 VKLQPEILGEH 230 (345)
T ss_pred CccCHHHHHHH
Confidence 78999999999
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=5 Score=42.05 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=81.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+.|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887776 4778999999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
-+.+++.+++||..|-|..|.+-.- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~d 235 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGAD 235 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCC
Confidence 3456678999999999999976332 4446667777777876655 4454433 4556666666654
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=17 Score=32.98 Aligned_cols=167 Identities=17% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC----ChhHHHHHHHHHHhC--CceecC--C-cHH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVST--G-DWA 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~----~~~~l~eKi~l~~~~--gV~v~~--G-tl~ 92 (254)
+..|++.++.+|. .+...+..++.+..|-. +..+.|-+.-. +.+.+.+..+++..+ .|..-. | .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999997 56788889999888864 66777776533 233455555455433 221111 3 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
+ ...++. -|...++.|++++...+==+-+ ..+ .+++.+++.+... -++-...+ |
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~~---~~~~il~~~~~~~---~~i~H~fs--G-------- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----THD---KLAMHLKRHDLPR---TGVVHGFS--G-------- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----ccH---HHHHHHHhcCCCC---CeEEEcCC--C--------
Confidence 1 122333 7999999999999998865655 223 4455555544211 12322111 1
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc-ccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg-i~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.= + -| ++.+ +.+.+.++++.+|+++|++|...|
T Consensus 162 --------------~----~~~a~~~l~~G~~iS-~--~g~it~~----~~~~~~~~~~~ipldriL~ETD~P 209 (258)
T PRK11449 162 --------------S----LQQAERFVQLGYKIG-V--GGTITYP----RASKTRDVIAKLPLASLLLETDAP 209 (258)
T ss_pred --------------C----HHHHHHHHHCCCEEE-e--Ccccccc----CcHHHHHHHHhCChhhEEEecCCC
Confidence 1 668889999997631 1 12 2222 335578899999999999998765
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.77 E-value=5.5 Score=36.79 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=40.2
Q ss_pred cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 62 GT~~l~~~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
|......++.+.+.++..++. ++++.. -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 444556778899999888764 555443 111 1125778888899999999998886643
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.1 Score=40.04 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 74 eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+-++...+++| .|.-|.=.|. .-+..+.+.+.|+++|||. +......+.|+.+++.. |++
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~~--------a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~-- 67 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLED--------AVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEA-- 67 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHHH--------HHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCC--
Confidence 34466678887 4444533333 3345677889999999998 55667889999998731 221
Q ss_pred ecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----------cccccCCCccHHHH
Q 025344 153 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADII 221 (254)
Q Consensus 153 k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----------gi~d~~g~~r~d~i 221 (254)
-+|+ +. .+ + .++++..++|||++++.=+= ++--==|-....++
T Consensus 68 -----~IGA--GT----Vl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 68 -----LIGA--GT----VL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -----EEEE--ee----cc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2221 11 12 2 38899999999999997652 21111155555555
Q ss_pred HHHHhccCCCceEE
Q 025344 222 AKVIGRLGLEKTMF 235 (254)
Q Consensus 222 ~~ii~~l~~~klif 235 (254)
.+.. +.|.+-+-+
T Consensus 122 ~~a~-~~Ga~~vKl 134 (212)
T PRK05718 122 MLGM-ELGLRTFKF 134 (212)
T ss_pred HHHH-HCCCCEEEE
Confidence 5433 466555544
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.3 Score=41.76 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888877665 7999999998665432221 1 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.-+++.+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~alk 193 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGLK 193 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHHH
Confidence 12589999999999999998764 688899999988888886653
|
|
| >TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917 | Back alignment and domain information |
|---|
Probab=88.59 E-value=6.1 Score=36.14 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGI------------------------------ 186 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGI------------------------------ 186 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCc------------------------------
Confidence 66777777777777766432111223455555566666776653222222
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc-ccc-ccCCCccHHHHHHHHhc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 227 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar-gi~-d~~g~~r~d~i~~ii~~ 227 (254)
|++..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+|+..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4667778888899999999984332 234 44699999999998864
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=88.44 E-value=3.2 Score=38.07 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|+ +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34478889999999999999885543 58999999999998887421111 122 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc-CCCccHHHHHHHHhccCCCceEEecCC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
..++.+.++.++..-++|||.|++=.--.|.. .-+--.+-...|++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01478889999999999999999865433331 11111222334444 55567777764
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=8.8 Score=38.39 Aligned_cols=143 Identities=22% Similarity=0.297 Sum_probs=91.9
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4455677777 88999987554333333444433321 1223322 21 2 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+=++- . +.-.+.|+.+++.|+.| +|+..+. . . .|++.+++
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~---------~-----r----------~~~~~l~~ 147 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA---------S-----R----------ADLDFLKE 147 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC---------C-----C----------CCHHHHHH
Confidence 8665442 1 23345678888988764 4444211 0 1 15888999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.++...++||+.|. ++|..|-..+..+.+++..+-
T Consensus 148 ~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 148 LYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred HHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 99999999999864 689999999999988887663
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.3 Score=39.65 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...+=+
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv------------------ 157 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV------------------ 157 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee------------------
Confidence 58899999999999887522 2221 3455566789999999888754411
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+ + .+++++-.+||||.|.+--
T Consensus 158 --f-----------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 158 --F-----------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --c-----------C----HHHHHHHHHcCCCEEEecC
Confidence 1 1 6778888899999998865
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=88.31 E-value=22 Score=33.20 Aligned_cols=105 Identities=18% Similarity=0.320 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--ccccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GAYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~~~~~~~~~~~~ 180 (254)
+.+..|-+.||+.|=|....+++.+-- =.++++.++..|.-|--|+|.=-+. .|... ...+|
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~------e~~~~~~~~~~T-------- 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE------EDGVVGDEGLLT-------- 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc------cCCcccccccCC--------
Confidence 555677899999999987665444322 2478889999999999999984221 11100 01122
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEec---cccccc-CCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~-~g~~r~d~i~~ii~~l~ 229 (254)
||++ ++++.+ -|+|.+-+=- -|.|.. .-+++.+++.+|-+.++
T Consensus 149 --~pe~----a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~ 196 (276)
T cd00947 149 --DPEE----AEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN 196 (276)
T ss_pred --CHHH----HHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 5544 455554 4888776644 289988 78899999999998775
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.19 E-value=4.3 Score=37.12 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=87.7
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~ 117 (254)
.+-+.|..+| ||.+=+||+.+. |.+ .+-++.+.+.+ .... .|.-. ...+.. .-+.-++.+.+.|.+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPGSN--PKD--TEFFARAKKLKLKHAKLA--AFGST-RRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCcCC--HHH--HHHHHHHHHcCCCCcEEE--EEecc-cccCCCccchHHHHHHHhCCCCE
Confidence 3445566777 899999996533 321 22233333332 2211 11100 011100 0124577788999999
Q ss_pred EEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 118 IELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 118 IEISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
|-|...+- ..+ -+.-.++|+++++.|++|. ++... . -|. . ..+++
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~----~---~d~--------~------~~~~~ 151 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH----F---FDG--------Y------KANPE 151 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe----c---ccc--------C------CCCHH
Confidence 99864432 122 2234678999999998652 22210 0 000 0 11588
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++.+++..++|++.|. |.|..|...+..+..+++.+
T Consensus 152 ~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 152 YALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 889999999999999764 78899999999888887654
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.15 E-value=5.4 Score=43.96 Aligned_cols=159 Identities=9% Similarity=0.086 Sum_probs=108.1
Q ss_pred chhHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCc----eec-CCcHHHHHHH--hCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVS-TGDWAEHLIR--NGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV----~v~-~Gtl~E~a~~--qg~~~~~~yl~~~ 110 (254)
+-.-.+++++.| ..-||.+-+.-...- -+.++.-++.++++|- .+| +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 335667766654 445999998865444 3459999999999993 222 23222 1211 2333556677778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.++|.+.|=|.|-.--+.+..=.++|+.+++.= .+--+++- + .|...-+..
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~---H-------------------------nt~Gla~an 751 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHT---H-------------------------DTSGNGLAT 751 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEe---C-------------------------CCCchHHHH
Confidence 889999999999999999999999999999841 11112222 1 123444778
Q ss_pred HHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC
Q 025344 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.-..++|||+.|=+=-.|+-...||...+.+-..++..+.
T Consensus 752 ~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 752 YLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred HHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 8889999999765555588888898888877666665553
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.6 Score=40.03 Aligned_cols=104 Identities=10% Similarity=0.141 Sum_probs=68.8
Q ss_pred hHHHHHHH-hhcccccEEeecCccc-ccCChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHhCC
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~l~--------------eKi~l~~~----~gV~v~~Gtl~E~a~~qg~ 100 (254)
..+.+++. ..-..+|++=+|+=.| .+.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~-- 93 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR-- 93 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh--
Confidence 44444433 3445699999997543 122222222 22233322 34443322666666666
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+.
T Consensus 94 -G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 94 -GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred -HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 59999999999999999887 58889999999999999998877543
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.08 E-value=4.4 Score=35.36 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.= ..-+-+. + +
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~---~~pv~~~---------G----------------g 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV---GIPVQVG---------G----------------G 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc---CCCEEEe---------C----------------C
Confidence 455667777789999999997654332 444467888877731 0011110 1 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEe
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifE 236 (254)
..+ .+.+++.+++||+.|++=.. ... ..+.+.+++++++.+++++=
T Consensus 82 I~~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 IRS----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred cCC----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 112 66778888899999998443 332 26778888888877666554
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=88.03 E-value=16 Score=33.79 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=72.3
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCcHHHHHHH---hCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIR---NGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~---qg~~~~~~yl~~~k~ 112 (254)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..+++.. .++.=+-.|+.+. .| -..++.++.+|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44454444443222 24566666776666677889999999998753 3333356676532 22 135899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 025344 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.|.+.+- ++.-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 9999772 321111 35788999999999999988775
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=87.78 E-value=12 Score=35.12 Aligned_cols=107 Identities=11% Similarity=0.141 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-c---cccccccCCCcc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-A---FGAYVARAPRST 178 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~---~~~~~~~~~~~~ 178 (254)
+.+..|-+.||+.|=+....+++.+--+ .++++.|...|.-|-.|+|.=-+ ..|. . -...+|
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~~~~~~~T------ 153 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG------VEDDLSVDEEDALYT------ 153 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC------ccCCCccccchhccC------
Confidence 5678889999999999866655443322 36788899999999999998421 1111 0 001122
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
||++..+.++ +-|+|.+=|== -|+|...-+++-|.+++|-+.++.
T Consensus 154 ----~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~i 201 (282)
T TIGR01858 154 ----DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDV 201 (282)
T ss_pred ----CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCC
Confidence 5655555544 36888775543 399998889999999999877653
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=16 Score=35.32 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=80.3
Q ss_pred ecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc----
Q 025344 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL---- 125 (254)
Q Consensus 59 fg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti---- 125 (254)
+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++... .-..++.++.+|+.|++.+ |+.+-++
T Consensus 120 iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~ 199 (370)
T PRK05926 120 IVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETL 199 (370)
T ss_pred EEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhh
Confidence 334665555667788888888876 67765435567776543 1246899999999999764 3333333
Q ss_pred ---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 126 ---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 126 ---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
..+.++|++.++.+++.|+++-+= .-++. .++++++++.+..--+-+.+.+
T Consensus 200 ~p~~~t~~e~l~~i~~a~~~Gi~~~sg--mi~G~------------------------gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 200 APGRLSSQGFLEIHKTAHSLGIPSNAT--MLCYH------------------------RETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcccCc--eEEeC------------------------CCCHHHHHHHHHHHHhcCCccC
Confidence 346799999999999999998773 32222 1247888888877666666543
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=87.41 E-value=4.4 Score=37.66 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
--++.+..++.|++.+-|=|=-- ....-..+|+.+.+. . +.++.+. .
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg--g~~~n~~~i~~i~~~--~----~~vqvGG-------G------------------ 91 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA--DDASLAAALEALRAY--P----GGLQVGG-------G------------------ 91 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC--CCcccHHHHHHHHhC--C----CCEEEeC-------C------------------
Confidence 34455555778888766644311 222235677777762 2 2222111 1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEE
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klif 235 (254)
+. .+++++-|++||++|||=+--+. ++.+.++++.+++++.|.++|+.
T Consensus 92 -IR--~e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivv 139 (262)
T PLN02446 92 -VN--SENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVL 139 (262)
T ss_pred -cc--HHHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEE
Confidence 22 38899999999999999554333 47889999999999999999886
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=14 Score=35.09 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
++++.++.++..-++|+|+|-|=++
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5788888888888999999998554
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=10 Score=34.88 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=69.8
Q ss_pred hhHHHHHHH-hhcccccEEeecCccc-ccCChhHHHHHHHHHHh------------------CCceecCCcHHHHHHHhC
Q 025344 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQ------------------HDVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 40 ~~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~l~eKi~l~~~------------------~gV~v~~Gtl~E~a~~qg 99 (254)
+..+.+++. ..-.-+|++=+|+=.| .+.+-..+++--..+-+ +++++..=|++...+..|
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhC
Confidence 355555444 3344599999997543 23333333333222222 344433336666667665
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+=+.-
T Consensus 108 ---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 108 ---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred ---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999874 578899999999999999987764443
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=87.14 E-value=11 Score=34.27 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCc--HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhH
Q 025344 68 PKPFIEEVVKRAHQHDV-YVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEET 131 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~gV-~v~~Gt--l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~ 131 (254)
|.+++.+-+..+++... .+.-|+ .=|+... .+.+.+ +++.|||+-|+ +--+++.
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~---------a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~ 122 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRFVDLEEAYDV---------LLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKEL 122 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHH---------HHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHH
Confidence 45777777777775543 222342 2222211 122223 79999999887 3346777
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 132 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 132 r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |.
T Consensus 123 l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~~ 172 (231)
T TIGR00736 123 LKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--YP 172 (231)
T ss_pred HHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--CC
Confidence 788888888653 23 66763321 0 1234578888889999999999753 33
Q ss_pred cCCCccHHHHHHHHhccC
Q 025344 212 HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 212 ~~g~~r~d~i~~ii~~l~ 229 (254)
..+....+.|.++.+.++
T Consensus 173 g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 173 GKPYADMDLLKILSEEFN 190 (231)
T ss_pred CCchhhHHHHHHHHHhcC
Confidence 223367888888887663
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.93 E-value=15 Score=34.32 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.+..|-+.||+.|=+.-..+++.+--+ .++++.|...|.-|-.|+|.=-+. +-+...+.. ...+|
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~-e~~~~~~~~-~~~~T---------- 155 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQ-EDDLVVDEK-DAMYT---------- 155 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-cCCcccccc-cccCC----------
Confidence 5778889999999999766654433222 367888899999999999984221 110000100 01122
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
||++..+.+++ -|+|.+-|== -|+|...-+++-+.+++|-+.++
T Consensus 156 ~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK12737 156 NPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS 202 (284)
T ss_pred CHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 56666655554 5888776543 39998888899999999987665
|
|
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.6 Score=38.47 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=71.4
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~---~~k~lG 114 (254)
....+.++++..++|||++|+|+--..-+..+.+++-++.+++++.++.--. +..+- +.+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Dig-----~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDIG-----NTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SSH-----HHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeecccc-----hHHHHHHHHhhhhhcCC
Confidence 5578889999999999999999877777776689999999999997665421 22111 12334444 567899
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 999988743 34777778888888876
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.7 Score=35.29 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-cccC---ChhHHHHHHHHHHHc-C
Q 025344 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEI---PEETLLRYVRLVKSA-G 143 (254)
Q Consensus 70 ~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i---~~~~r~~lI~~~~~~-G 143 (254)
+.+.+.++.+|+ .++.+.++.. ..++ ...+.+.|+++|-++.+ .... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 458899999999 8888776521 1222 24567899999977532 2111 112224566666664 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 144 ~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
..|....|++ + .+.+++.+++||+-|++=+ .+++
T Consensus 174 iPvia~GGI~-----------------------------t----~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN-----------------------------T----PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC-----------------------------C----HHHHHHHHHCCCCEEEEch-HhcC
Confidence 5555555552 1 4567778899999999853 3554
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.77 E-value=28 Score=32.65 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-cc---ccccccCCCcc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AF---GAYVARAPRST 178 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~~---~~~~~~~~~~~ 178 (254)
+.+..|-++||+.|=+.-..+++.+--+ +++++.|...|.-|--|+|.=-+ +.|. .. ...+|
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~~~~~~~T------ 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG------QEDDLQVDEADALYT------ 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC------cccCcccccccccCC------
Confidence 5677788999999999866654433222 36788889999999999998421 1111 00 01122
Q ss_pred ccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|| ++++++++ -|+|..-|== -|+|...-+++-+.+.+|-+.++
T Consensus 156 ----~p----eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK09195 156 ----DP----AQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN 202 (284)
T ss_pred ----CH----HHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 45 44555554 5988776543 39999888999999999987765
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.7 Score=39.48 Aligned_cols=77 Identities=29% Similarity=0.390 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~--------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+.+|.+.+.+.|+|+|||+-++...+. +...++++.+++. . -+| +.+| ++|
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~-~iP-v~vK-----------------l~p 172 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-V-TIP-VAVK-----------------LSP 172 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-c-CCC-EEEE-----------------cCC
Confidence 4567888888999999999888743332 2235778877764 1 123 4554 111
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..++.+.++...++||+-|++-.+
T Consensus 173 ---------~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 ---------FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ---------CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 1234567777788999999999887
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=5 Score=37.69 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=74.5
Q ss_pred EeecCcccccCChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC---Ch
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---PE 129 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---~~ 129 (254)
.|-|.|++++-+++.+.+.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+-+- ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 56677888888899999999988764 44443 2 35533 11256788888999999999999876421 12
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEeccc
Q 025344 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDSDD 208 (254)
Q Consensus 130 ~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEarg 208 (254)
.+ .++|++++++ +.+ +. ++. +| .. | .+.+++.++ .|||.||| |||
T Consensus 181 a~-~~~i~~ik~~-------~~i--PV--I~n-Gg-----I~-----------s----~~da~~~l~~~gadgVmi-GR~ 226 (321)
T PRK10415 181 AE-YDSIRAVKQK-------VSI--PV--IAN-GD-----IT-----------D----PLKARAVLDYTGADALMI-GRA 226 (321)
T ss_pred cC-hHHHHHHHHh-------cCC--cE--EEe-CC-----CC-----------C----HHHHHHHHhccCCCEEEE-ChH
Confidence 33 3788888773 222 10 111 11 11 2 455666665 79999999 776
Q ss_pred ccc
Q 025344 209 VCK 211 (254)
Q Consensus 209 i~d 211 (254)
++.
T Consensus 227 ~l~ 229 (321)
T PRK10415 227 AQG 229 (321)
T ss_pred hhc
Confidence 654
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.53 E-value=5.1 Score=37.80 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 135 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------i~~~~r~~l 135 (254)
+.+..-=++...-+++|.- .||-+ + . ++-+.++.+.+.|.-.|-|-|-... +|.++-++=
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3445555556666776664 25665 2 1 5677888899999999888776664 788888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|+-+++. ...+.|-+-- . -|. + ...-.++-|++++..+|||||+|-.|+.
T Consensus 139 IkAa~~a--~~~~~fvi~A---R----Tda----------~---~~~~ld~AI~Ra~AY~eAGAD~if~~al 188 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA---R----TDA----------L---LVEGLDDAIERAQAYVEAGADAIFPEAL 188 (289)
T ss_pred HHHHHHh--ccCCCeEEEe---e----hHH----------H---HhccHHHHHHHHHHHHHcCCcEEccccC
Confidence 8887774 1124444421 1 111 1 1223788999999999999999999996
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=3.3 Score=38.89 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--C---c---H---HHHHHHhCCchHHHHHHHHHHcC
Q 025344 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G---D---W---AEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--G---t---l---~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
-++.+++|+|+|.+|- -++.+- +.+.-+-+-|-+|-. | + | .|++...|..++ .+.+-|
T Consensus 99 ~~~~~ae~vDilQIgA---r~~rnt---dLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~v-----ilcERG 167 (281)
T PRK12457 99 QAAPVAEVADVLQVPA---FLARQT---DLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRV-----ILCERG 167 (281)
T ss_pred HHHHHhhhCeEEeeCc---hhhchH---HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeE-----EEEeCC
Confidence 3567899999999984 233321 223333444555543 4 1 1 333333331111 123445
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceee--eecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFA--VMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g--~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
+. -|.-.+..+.+ .|-.+++. ++-|+.... +|.| |..++.. .-..+.+...
T Consensus 168 ~~-----fgy~~~~~D~~--~ip~mk~~~t~lPVi~DpSHsvq~p----~~~g~~s--------------~G~re~v~~l 222 (281)
T PRK12457 168 SS-----FGYDNLVVDML--GFRQMKRTTGDLPVIFDVTHSLQCR----DPLGAAS--------------GGRRRQVLDL 222 (281)
T ss_pred CC-----CCCCCcccchH--HHHHHHhhCCCCCEEEeCCccccCC----CCCCCCC--------------CCCHHHHHHH
Confidence 54 25555555544 45567775 777765432 2222 1112211 0125667788
Q ss_pred HHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccC-CCceE
Q 025344 191 AERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTM 234 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~-~~kli 234 (254)
++..+++|||-+|||.- -++|..-.+..+.++++++.+- +.+++
T Consensus 223 arAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i~~~~ 272 (281)
T PRK12457 223 ARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKALDDLV 272 (281)
T ss_pred HHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999994 7899999999999999987654 44443
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=86.33 E-value=7.1 Score=30.55 Aligned_cols=96 Identities=23% Similarity=0.407 Sum_probs=70.3
Q ss_pred chhHHHHHHHhhc-cc-ccEEeecCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag-~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~---gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.+..+.+.+.... +. +..+=|+.|...++++ ..+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD--FIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh--HHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 3455555555552 32 8999999999999987 77777777775 775553 55443 6888899
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcc
Q 025344 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v 146 (254)
+++|++.|.+|--+.+ -+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999998855542 35567788999999999884
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.4 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++.++.++++||+.||+..-. ..+..++-+.++++|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 79999999999999999996521 23566777888899999765
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.93 E-value=25 Score=32.96 Aligned_cols=161 Identities=11% Similarity=0.185 Sum_probs=101.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH---------------
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR--------------- 97 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~~Gtl----~E~a~~--------------- 97 (254)
..++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+-++ ++|+. ++.+..
T Consensus 4 v~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 4 VNGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred CcHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3566666655432 46777777888888888888888877432 22211 122211
Q ss_pred ---hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--c
Q 025344 98 ---NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--G 168 (254)
Q Consensus 98 ---qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~ 168 (254)
++ .--+.+.+|-++||+.|=+ |||- +|.++ =.++++.|...|.-|--|+|.=-+ ..|... .
T Consensus 80 HLDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~~ 149 (283)
T PRK07998 80 HLDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHVSEA 149 (283)
T ss_pred ECcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------ccccccccc
Confidence 22 2236777888999999999 5553 55543 347888899999999999998321 122100 0
Q ss_pred cccccCCCccccccCHHHHHHHHHHHH-HcCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dL-eAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
..+ .||++. ++++ +-|+|.+=+== -|+|.. -+++.|.+++|-+.++.
T Consensus 150 ~~~----------T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~v 200 (283)
T PRK07998 150 DCK----------TEPEKV----KDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPV 200 (283)
T ss_pred ccc----------CCHHHH----HHHHHHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCC
Confidence 112 256555 4444 35888665543 289976 77889999999887654
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=85.84 E-value=2 Score=36.61 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 025344 106 YVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~-----------------i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (254)
-+.+++++||++|.++-=+-. + +.++..++|+.++++|++|+..+-..+
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 355778899999988642211 1 237899999999999999999988753
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=7.9 Score=34.60 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 025344 72 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
-.+-++.|++++|.+.|| |.-|+ ..+.++|++.|-+-...... -..+|+.++. ++|.
T Consensus 97 ~~~vi~~a~~~~i~~iPG~~TptEi-------------~~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~----p~p~ 155 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPGVSTPSEL-------------MLGMELGLRTFKFFPAEASG----GVKMLKALAG----PFPD 155 (212)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHH-------------HHHHHCCCCEEEEccchhcc----CHHHHHHHhc----cCCC
Confidence 346677777777777777 56663 23478999999994433221 1456666655 3443
Q ss_pred eeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 150 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 150 ~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
+... .+| + ++ .+.+...|+||+..+.. +.-+++.+
T Consensus 156 ~~~~----ptG--G-------V~---------------~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 156 VRFC----PTG--G-------IS---------------PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred CeEE----EeC--C-------CC---------------HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 3331 111 1 11 57889999999666666 66677543
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.7 Score=36.70 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+-++.+.+.+.|+++|||+=|+-.. .++.-.++++.+++. +..-+.+|-
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl--------------- 175 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKL--------------- 175 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEEC---------------
Confidence 45555666667799999998887543 345666778887763 111255652
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +..++.+.++...++||+.|++
T Consensus 176 --~~---------~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 176 --TP---------NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred --CC---------CchhHHHHHHHHHHcCCCEEEE
Confidence 11 2345677778889999999973
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=85.69 E-value=11 Score=37.82 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=90.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=.||-.+.=-+.+.+++..+..+ +..++ .|. .-.+..++.-++..+..+.+.|-+.
T Consensus 27 ~ia~~L~~~G--V~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~--al~----r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 27 QIALALERLG--VDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVC--GLA----RCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred HHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEE--EEc----CCCHHhHHHHHHhccccCCCEEEEE
Confidence 4456677777 899999886543333344433333221 22222 121 1112245555555566688888887
Q ss_pred CCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+.. + .|++.+++
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~~------------------r------~d~~~l~~ 150 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDAG------------------R------TEIPFLAR 150 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCCC------------------C------CCHHHHHH
Confidence 66633 23333 23688899998875 344442110 1 15899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.| .++|..|-..++.+.++++.+
T Consensus 151 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 151 IVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred HHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999865 479999999999888888665
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=85.50 E-value=10 Score=35.26 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc--cccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG--AYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~--~~~~~~~~~~~~ 180 (254)
+.+..|-+.||+.|=+..-..+..+ +.-.++++.++..|..|--|+|.- + | .+|...+ ..+
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~-g----g-~ed~~~g~~~~~--------- 152 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTL-G----G-IEDGVDEKEAEL--------- 152 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCC-c----C-cccccccccccc---------
Confidence 4666777889999999877654432 123366677788898888888872 1 1 1221100 111
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEe-c--ccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLe-AGA~~ViiE-a--rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.| .++++++.+ .|+|++-+= + -|+|.....+..+.+.+|-+.++
T Consensus 153 -t~----~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 153 -AD----PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred -CC----HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 24 445566665 799998864 2 38898888999999999988765
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=19 Score=33.04 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhC--Ccee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHH
Q 025344 70 PFIEEVVKRAHQH--DVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYV 136 (254)
Q Consensus 70 ~~l~eKi~l~~~~--gV~v--~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI 136 (254)
+.+.+-++..|++ ++.+ +.|-. -++-++.+|+.|.+.+-++..|- .-+-+++.+.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~-----------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i 143 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTA-----------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTC 143 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCC-----------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHH
Confidence 4566777777776 4544 22322 36778888999999887654332 24457888899
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+.+++.|+++.+ |.-.+.. ++.+++++.+..--+-+.+.|-+-
T Consensus 144 ~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l~~lr~L~~~svpl~ 186 (279)
T PRK08508 144 ENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFLKSLASLSPHSTPIN 186 (279)
T ss_pred HHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHHHHHHcCCCCEEeeC
Confidence 999999988777 4433321 147888888887778888866553
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.6 Score=40.95 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (254)
..-++++.+.+.|.++||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3446666777889999999988542 223334456666666
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.21 E-value=7.5 Score=36.22 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHHHHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHH
Q 025344 72 IEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFKEYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLV 139 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~ 139 (254)
+++-+++++++|.. +.++ | .|-+-.-.++.+.++++.+.+. | .+.|-++|-.--..+.+-.++|+.+
T Consensus 122 ~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l 200 (284)
T cd07942 122 AVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWF 200 (284)
T ss_pred HHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHH
Confidence 66778899999864 2111 1 2333333445788888888877 5 4488899998888888888999988
Q ss_pred HHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCc
Q 025344 140 KSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL 216 (254)
Q Consensus 140 ~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~ 216 (254)
++. +-....+++. |+-.|...-+..+-..++|||+.| ++- |+=...||.
T Consensus 201 ~~~~~~~~~~~~~~--------------------------H~Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN~ 252 (284)
T cd07942 201 CRNLSRRESVIISL--------------------------HPHNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGNV 252 (284)
T ss_pred HHhcCCCCCceEEE--------------------------EecCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccch
Confidence 763 1000112232 333456667888899999999985 554 775559999
Q ss_pred cHHHHHHHHhccCC
Q 025344 217 RADIIAKVIGRLGL 230 (254)
Q Consensus 217 r~d~i~~ii~~l~~ 230 (254)
-++.+-..+...+.
T Consensus 253 ~~E~lv~~l~~~g~ 266 (284)
T cd07942 253 DLVTLALNLYSQGV 266 (284)
T ss_pred hHHHHHHHHHhcCC
Confidence 99888777766554
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.10 E-value=2 Score=38.79 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=57.0
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 75 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
-++...+++| .|.-+.=.|. .-+..+.+.+-|+++|||.--| ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~--------a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEV--------AKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHH--------HHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 4444543333 3455678899999999997644 334566666654 34443
Q ss_pred cCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 154 ~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
++.--+|+ |-.++ .++++..++|||++++-=+
T Consensus 68 ~p~~~vGa------GTVl~---------------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV------GSIVD---------------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee------EeCcC---------------HHHHHHHHHcCCCEEECCC
Confidence 33222332 12233 7888999999999998644
|
|
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=85.08 E-value=6.2 Score=35.10 Aligned_cols=89 Identities=18% Similarity=0.354 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.++++|+++.. .+.-. -.+.+ .|++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~--~nl~s-~d~~--------- 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYL--INLAS-PDKE--------- 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCce--ecCCC-CCHH---------
Confidence 467788899999999999976554 46778888888889999987532 11100 01111 1111
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
....+.+.+.+.++.+-+.||..|.+.+
T Consensus 78 ---~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 78 ---KVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 0112355566666666677999988854
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=85.01 E-value=15 Score=35.42 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred cCcccccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 60 SGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 60 g~GT~~l~~~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
+.|......++.+.+.++..++. ++++..= + -+...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-------p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-------PNITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-------CCcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 34555667788899999998875 4544421 1 12124667778888999999997776654
|
|
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=84.87 E-value=5.4 Score=35.78 Aligned_cols=88 Identities=17% Similarity=0.396 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+++-++.++++||+.|||+-+.. ..+.++..++.+.++++ |+.+.. .+.-. . ... ..|+.
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~-~~~-~~~~~-------- 78 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-I-NLA-SPDKE-------- 78 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-e-ccC-CCCHH--------
Confidence 678888888889998888864432 12456676777777777 444322 11100 0 000 00100
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
......+.+.+.++.+-+.||..|++-
T Consensus 79 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 79 ----KREKSIERLKDEIERCEELGIRLLVFH 105 (279)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 111235556666666667788888773
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.86 E-value=1.7 Score=41.99 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=100.0
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecC-Cc
Q 025344 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (254)
Q Consensus 17 R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~----ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~-Gt 90 (254)
|..|....++|.|.+-.+.+ .++... ||=|.+- +-....+++.+.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~in~-------TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNINY-------TNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecCCc-------chhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 34666778999999888733 344433 3444444 3335567778889999999999999 4543 44
Q ss_pred HHHHHHHhCCchHHHHHHHHH-------HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcc
Q 025344 91 WAEHLIRNGPSAFKEYVEDCK-------QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR 163 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k-------~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~ 163 (254)
.--..-. .-+.+.++..| -.+|+..||.--+.......+ +.++++++.|+-..|+.|-- +- .
T Consensus 116 ~~p~~~~---~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~ae-----il--~ 184 (370)
T COG1060 116 EHPELSL---EYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAE-----IL--S 184 (370)
T ss_pred cCCCcch---HHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCccee-----ec--h
Confidence 2110000 02333334444 488998888876665555544 66788889999999988863 31 1
Q ss_pred ccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
|.. .+...|. ..++++|++.++..-++|-..+
T Consensus 185 e~v-r~~~~p~------K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 185 EEV-RKIHCPP------KKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred HHH-HHhhCCC------CCCHHHHHHHHHHHHHcCCCcc
Confidence 111 0112232 3479999999999999997654
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=6.6 Score=37.30 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHcC
Q 025344 183 DVDLLIRRAERCLEAG 198 (254)
Q Consensus 183 d~~~~i~~~~~dLeAG 198 (254)
+.+++++.++...++|
T Consensus 169 ~~~~rl~~i~~a~~~G 184 (345)
T PRK15108 169 TYQERLDTLEKVRDAG 184 (345)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3455555555555555
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.83 E-value=9.2 Score=35.39 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHHhhcccccEEeecCcccccCCh--hHHHHHHHHHHhC----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQH----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~--~~l~eKi~l~~~~----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+.|++.+| ||.+=+|+ .++-|+ +.+++..+...-. ++.+. .| ..+ +.-++.+.+.|.+
T Consensus 25 ~~~L~~~~G--v~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~--a~-----~~~----~~~~~~A~~~g~~ 89 (280)
T cd07945 25 AKILLQELK--VDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVL--GF-----VDG----DKSVDWIKSAGAK 89 (280)
T ss_pred HHHHHHHhC--CCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEE--Ee-----cCc----HHHHHHHHHCCCC
Confidence 344457777 88888884 334442 2344444432211 22221 12 122 3458889999999
Q ss_pred EEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-|+-.+ .+=..+.-.++|+.+++.|++| .++..+ ++ + |++ .++
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d----~~---~--------~~r------~~~ 146 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED----WS---N--------GMR------DSP 146 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe----CC---C--------CCc------CCH
Confidence 99987532 1222223456689999999763 455532 10 0 111 158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.+++..++||+.| .++|..|-..+..+.++++.+
T Consensus 147 ~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRI-----MLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHHHH
Confidence 899999999999999976 468889999988888888665
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.5 Score=36.86 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHH-HHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHL-IRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a-~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+...++.+++.+-+| ++-+. ++++..++.-.+..+..++.+.. ++|---. -..- ++.+ .++|-++|-|
T Consensus 15 t~~~i~~~~~~a~~~------~~~av-~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~--k~~e-ve~A~~~GAd 84 (203)
T cd00959 15 TEEDIRKLCDEAKEY------GFAAV-CVNPCFVPLAREALKGSGVKVCTVIGFPLGATTTEV--KVAE-AREAIADGAD 84 (203)
T ss_pred CHHHHHHHHHHHHHc------CCCEE-EEcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHH--HHHH-HHHHHHcCCC
Confidence 667888888888763 33333 34455677766677777777665 3321111 0110 2333 7788999999
Q ss_pred EEEecCCcccCCh---hHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 117 TIELNVGSLEIPE---ETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 117 ~IEISdGti~i~~---~~r~~lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.|++.-..-.+.. +.-.+-|..+.+. | ++|+-|.+. + +.+++..
T Consensus 85 evdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~------------------l-----------~~~~i~~ 135 (203)
T cd00959 85 EIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL------------------L-----------TDEEIIK 135 (203)
T ss_pred EEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC------------------C-----------CHHHHHH
Confidence 9999654433311 2122333333332 2 333333332 1 3677888
Q ss_pred HHHHHHHcCCcEEEEe
Q 025344 190 RAERCLEAGADMIMID 205 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiE 205 (254)
-.+-..++|||+|=+-
T Consensus 136 a~ria~e~GaD~IKTs 151 (203)
T cd00959 136 ACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHhCCCEEEcC
Confidence 8999999999998775
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.61 E-value=7 Score=37.42 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
+.....+...+.+||+-+|||-- -++|..-.+..+.++++++++
T Consensus 277 ~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 277 DLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred cchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 34466788999999999999983 679999999999999998765
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=84.51 E-value=5.2 Score=38.64 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+.+|.+.+++.|+++|||+=++-. -.++.-.++++.+++.- -+| +.+|-
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~P-v~vKl--------------- 175 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLP-VIVKL--------------- 175 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCc-EEEEc---------------
Confidence 5778888889999999999977643 24556678888887751 134 55552
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +...+.+.++...++||+-|++
T Consensus 176 --~p---------~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 176 --TP---------NITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred --CC---------CcccHHHHHHHHHHCCCCEEEE
Confidence 11 1233566777788999999983
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=20 Score=35.51 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=59.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~ 110 (254)
.+..++..++.- .|-+=+|+.... -+..+.|++-++++|++|+.+|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 455666666554 455555543222 334466999999999999988763 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (254)
.++|+|+|=|+| ..+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 4566777775
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.32 E-value=16 Score=34.22 Aligned_cols=165 Identities=13% Similarity=0.209 Sum_probs=102.8
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--H---HH----HHH--HhCCc-----
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AE----HLI--RNGPS----- 101 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l---~E----~a~--~qg~~----- 101 (254)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + ++ .+. .+.-+
T Consensus 5 ~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV 80 (286)
T PRK08610 5 SMKEMLIDAKEN----GYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPV 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCE
Confidence 456666655432 456777778888888888888887776442 221 1 12 111 11100
Q ss_pred -------hHHHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--ccc
Q 025344 102 -------AFKEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GAY 170 (254)
Q Consensus 102 -------~~~~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~~ 170 (254)
.=-+.+..|-++||+.|=+....+++.+--+ .++++.|...|.-|--|+|.=-+ ..|... ...
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~~~~ 154 (286)
T PRK08610 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG------QEDDVVADGII 154 (286)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCCCCcccc
Confidence 0135567788999999999766655443322 37888999999999999998421 112100 011
Q ss_pred cccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+| ||+ +++++++ -|+|.+-|== -|+|...-+++-+.+.+|-+.+++
T Consensus 155 yT----------~pe----ea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~v 204 (286)
T PRK08610 155 YA----------DPK----ECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGL 204 (286)
T ss_pred cC----------CHH----HHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCC
Confidence 22 454 4555554 4888765543 299998889999999999887664
|
|
| >smart00481 POLIIIAc DNA polymerase alpha chain like domain | Back alignment and domain information |
|---|
Probab=84.06 E-value=2.9 Score=29.74 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347999999999999999999997622222 3445566778999887
|
DNA polymerase alpha chain like domain, incl. family of hypothetical proteins |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=84.03 E-value=11 Score=33.78 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=77.5
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~------Gt-l~E~a~~qg~~~~~~yl~~~k 111 (254)
....++.+.+.|-+| ++.+-.++|. .++.--++++..+|.+++ |. ..|.-+.+ .+++-
T Consensus 16 t~~~i~~lc~~A~~~------~~~avcv~p~-~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E--------~~~Av 80 (211)
T TIGR00126 16 TEEDIITLCAQAKTY------KFAAVCVNPS-YVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYE--------TKEAI 80 (211)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEeCHH-HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHH--------HHHHH
Confidence 557888888888877 7777777766 577777777777887753 42 44443333 25678
Q ss_pred HcCCCEEEecCCcccCChhHHHH---HHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 112 QVGFDTIELNVGSLEIPEETLLR---YVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~---lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++|-|.|.+--..-.+-..++.. -|+.+++. | +||+-|.+. + +.
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~------------------L-----------~~ 131 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL------------------L-----------TD 131 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC------------------C-----------CH
Confidence 89999998865544333322222 22323321 3 344444333 2 24
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 025344 185 DLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE 205 (254)
++++.-.+-..++|||+|=+=
T Consensus 132 ~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeC
Confidence 678888999999999998663
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=16 Score=32.80 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=69.7
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec---------CCcHHH
Q 025344 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAE 93 (254)
Q Consensus 23 ~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~---------~Gtl~E 93 (254)
..++....|=|+ . .....+.+|+...+. .-.||.++.+++.+++-.+.+-+ .|.++ +-+|.|
T Consensus 74 ~~~~pi~vGGGI--r-s~e~v~~~l~~Ga~k-----vvigt~a~~~~~~l~~~~~~fg~-~ivvslD~~~g~v~~~gw~~ 144 (234)
T PRK13587 74 LTTKDIEVGGGI--R-TKSQIMDYFAAGINY-----CIVGTKGIQDTDWLKEMAHTFPG-RIYLSVDAYGEDIKVNGWEE 144 (234)
T ss_pred hcCCeEEEcCCc--C-CHHHHHHHHHCCCCE-----EEECchHhcCHHHHHHHHHHcCC-CEEEEEEeeCCEEEecCCcc
Confidence 345666777676 3 456666688765554 45799999999999988777632 23332 324544
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHH-cCCcccceeee
Q 025344 94 HLIRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKS-AGLKAKPKFAV 152 (254)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~-~G~~v~~E~g~ 152 (254)
. ..-...++++++.++|+..|=+. |||..=++-+ +++.+.+ .+..++..-|+
T Consensus 145 ~----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~---li~~l~~~~~ipvi~~GGi 201 (234)
T PRK13587 145 D----TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE---LTGQLVKATTIPVIASGGI 201 (234)
T ss_pred c----CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH---HHHHHHHhCCCCEEEeCCC
Confidence 2 12257999999999998865433 5666555544 3444433 23444444444
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=15 Score=32.92 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCce----ecCC-----cHHHHH
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTG-----DWAEHL 95 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~----v~~G-----tl~E~a 95 (254)
++....|=|+ . .+..++.+|+.-.+ |.+.||+++.+++.+++-++.+.+. |. +..| ||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4556677776 3 55777777776444 7899999999999999998888654 32 2112 4543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHH
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~i~~~~r~~lI~~~~~ 141 (254)
... ...++.+.+.+.|++.|=+-+= +..=+ + .++|+.+++
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~ 187 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCA 187 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHh
Confidence 222 6788999999999998877543 33322 2 467777776
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=83.84 E-value=1.1 Score=41.49 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=53.8
Q ss_pred chhHHHHHHHhhcccccEEee---cCccc----ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKF---SGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf---g~GT~----~l~~~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~ 109 (254)
.+..++..++..+.|---.|+ ..-|- .+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 678999999998874444443 22222 278888999999999999999999 76 999885544 2345444
Q ss_pred HHHcCCCEEEecC
Q 025344 110 CKQVGFDTIELNV 122 (254)
Q Consensus 110 ~k~lGF~~IEISd 122 (254)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=83.59 E-value=29 Score=32.61 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=44.0
Q ss_pred hHHHHHHHhhccc-ccEEeecCcccccCC-------hhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMP-------KPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~~l~~-------~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.|+.+.+-++ .|++=+-.++....+ ++.+.+.++-.++. ++++.. ... .+.+.+..+.
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~--------~~~~~~~a~~ 183 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF--------FSALAHMAKQ 183 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC--------ccCHHHHHHH
Confidence 3444444443332 566666555422211 12345555555543 444432 111 1257788888
Q ss_pred HHHcCCCEEEecCCcccC
Q 025344 110 CKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i 127 (254)
+.+.|.++|-+++.+..+
T Consensus 184 l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 184 LDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHcCCCeEEEEcCcCCC
Confidence 999999999999987443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.47 E-value=27 Score=33.27 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=72.8
Q ss_pred hhcccccEEeecCcccccCChhHHHHHHHHHHhCC--ceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEE
Q 025344 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIE 119 (254)
Q Consensus 49 ~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~-----~IE 119 (254)
......+-+=+.+|-..-++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++.+|+.|.+ .+|
T Consensus 85 a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE 164 (348)
T PRK08445 85 LLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAE 164 (348)
T ss_pred HHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCcee
Confidence 33445677777888888888888999999888875 54432 1223434333312458999999999998 278
Q ss_pred ecCCc----c---cCChhHHHHHHHHHHHcCCcccce
Q 025344 120 LNVGS----L---EIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 120 ISdGt----i---~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
+++-. + ..+.++|.+.|+.+++.|+++-+=
T Consensus 165 ~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 165 ILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred eCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 66642 2 578889999999999999998773
|
|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=83.46 E-value=12 Score=33.57 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=75.4
Q ss_pred hHHHHHHHhhcc-----cccEEeecCcccccCChhHHHHHHHHHHhCCce---ec-C-CcHHHHHHHhCCch-----HHH
Q 025344 41 NVLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-T-GDWAEHLIRNGPSA-----FKE 105 (254)
Q Consensus 41 ~~~~DlLe~ag~-----yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~---v~-~-Gtl~E~a~~qg~~~-----~~~ 105 (254)
..|+|+|+.+.+ +|+ +|-+-+. .-++...++..+++++++|.. +. . -.....+-...|+. ...
T Consensus 114 PtL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~ 191 (252)
T cd08574 114 PSLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKL 191 (252)
T ss_pred CCHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeecccc
Confidence 478888887754 233 4743321 123345778899999999862 21 2 12233333333321 123
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
+....+++|++.+-++...++ .++|+.++++|++|.+ .++. |
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~-WTVn-----------------------------~-- 233 (252)
T cd08574 192 PVESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL-YVVN-----------------------------E-- 233 (252)
T ss_pred chHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE-EccC-----------------------------C--
Confidence 344556788887766655442 3689999999888666 4441 1
Q ss_pred HHHHHHHHHHHcCCcEEEEec
Q 025344 186 LLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++.++.|+|-||..+
T Consensus 234 --~~~~~~l~~~GVdgIiTD~ 252 (252)
T cd08574 234 --PWLYSLLWCSGVQSVTTNA 252 (252)
T ss_pred --HHHHHHHHHcCCCEEecCc
Confidence 4567888999999999764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=83.45 E-value=20 Score=33.08 Aligned_cols=149 Identities=16% Similarity=0.255 Sum_probs=91.1
Q ss_pred chhHHHHHHHhhcc-cccEEeecCccc-ccCChhHHHHHH-----------------HHHH--hCCceecCCcHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEVV-----------------KRAH--QHDVYVSTGDWAEHLIR 97 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~-~l~~~~~l~eKi-----------------~l~~--~~gV~v~~Gtl~E~a~~ 97 (254)
.+..+.+++...-+ -+|++=+|+=.| .+.+-.++++-- +-.| ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 34666666666555 899999997544 223333333322 2222 23455555577888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.| +++|++.|++.|++.+=| -+||.++...+.+.++++|+..++=+...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------------------------ 150 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------------------------ 150 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT------------------------
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC------------------------
Confidence 85 999999999999999877 46888999999999999999877744431
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccHHHHHHHHhc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~i~~ii~~ 227 (254)
+++++|+.+. +.+..+|=.=++ |++-....+.. .+.+.+++
T Consensus 151 -----t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~~ 192 (259)
T PF00290_consen 151 -----TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIKR 192 (259)
T ss_dssp -----S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHHH
T ss_pred -----CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHHH
Confidence 2455555553 344556655555 77666655443 34444433
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.41 E-value=28 Score=32.89 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 025344 183 DVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~Vii 204 (254)
++++.++.++..-++|+|+|-|
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888898888899999988
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=16 Score=34.35 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcc-cceeeeecCCCCCCCcccccccccccc
Q 025344 108 EDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKA-KPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v-~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
+.+.+.||+.|||+-|+- .=..+.-.++++.+++. ... +| +++|... |
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------- 143 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------- 143 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C-------------
Confidence 345778999999998772 12333444556665553 100 22 5665321 1
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCC-ccHHHHHHHHhccC
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADS-LRADIIAKVIGRLG 229 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~-~r~d~i~~ii~~l~ 229 (254)
| .+.++.++.++..-++|++.|.|=+|--.. -.|. .+.+.+.++-+.++
T Consensus 144 --~-----~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~ 194 (312)
T PRK10550 144 --W-----DSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT 194 (312)
T ss_pred --C-----CCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC
Confidence 1 023445788888889999999999982111 0122 24566666665543
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=82.95 E-value=34 Score=33.96 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=74.9
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCC-ceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
+.++-|.-.+..+ +++.+++..+.+.+.| +.+.-+ +=.... .. =++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~----d~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VR----DADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cC----CHHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 5556666665544 3445666666666655 322211 111111 11 15788999999999999844433
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++-.+.|+.++++|+.+...|=+ +. + + ++.+++.+.++..++.+.+
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~--G~--P---~------------------et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT--GF--E---N------------------ETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE--EC--C---C------------------CCHHHHHHHHHHHHHcCCC
Confidence 245677789999999999987544333 21 0 1 1477888888888889988
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.+.+
T Consensus 369 ~~~~ 372 (497)
T TIGR02026 369 QANW 372 (497)
T ss_pred ceEE
Confidence 7665
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.80 E-value=24 Score=33.12 Aligned_cols=165 Identities=14% Similarity=0.200 Sum_probs=103.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhCC----
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNGP---- 100 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l----------~E~a~~qg~---- 100 (254)
..+.++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + +..+..+-.
T Consensus 4 v~~~~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VP 79 (285)
T PRK07709 4 VSMKEMLNKALEG----KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVP 79 (285)
T ss_pred CcHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCc
Confidence 3566666665443 567777778888888888888877776432 232 1 111111110
Q ss_pred -------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--cc
Q 025344 101 -------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GA 169 (254)
Q Consensus 101 -------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~ 169 (254)
..=-+.+..|-++||+.|=+.....++.+-- =.++++.|...|.-|--|+|.=-+ ..|... ..
T Consensus 80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg------~ed~~~~~~~ 153 (285)
T PRK07709 80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG------QEDDVIAEGV 153 (285)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCcccccc
Confidence 0012566788899999999976665444322 237788889999999999998321 122100 01
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.+| ||++ ++++++ -|+|.+-+== -|.|...-+++.+.+++|-+.++
T Consensus 154 ~yT----------~pee----A~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~ 203 (285)
T PRK07709 154 IYA----------DPAE----CKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG 203 (285)
T ss_pred cCC----------CHHH----HHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC
Confidence 122 5554 445553 4999876632 28999888999999999988775
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=82.80 E-value=3.4 Score=39.76 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+..+.+-++++-+-|+|.|=... ..-.+|.++|.++++.+.+. +..|-|.+-.. .
T Consensus 145 ~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~y--------------~----- 202 (367)
T cd08205 145 PEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTLY--------------A----- 202 (367)
T ss_pred HHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcceE--------------E-----
Confidence 33566666777778999985433 33478999999999988873 22233332110 0
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.-.+.+.++++++++...++||+.||+--
T Consensus 203 -~nit~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 203 -PNITGDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred -EEcCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 01112469999999999999999999976
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.77 E-value=8.1 Score=34.48 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 75 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
.++...+++| .|.-+.=.|.+ -+-.+.+.+-|+..+||.- ......+.|+++++. +.-.|++-
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a--------~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~~-~~~~p~~~-- 69 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEA--------LKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVEL-YKDDPEVL-- 69 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHH--------HHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHHH-cCCCCCeE--
Confidence 3577788888 44446544443 3446778899999999865 446677899998873 11111111
Q ss_pred cCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 154 ~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+|+ |-.++ .+++++.++|||++++-=+
T Consensus 70 -----vGa------GTV~~---------------~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 70 -----IGA------GTVLD---------------AVTARLAILAGAQFIVSPS 96 (213)
T ss_pred -----Eee------eeCCC---------------HHHHHHHHHcCCCEEECCC
Confidence 221 11133 7789999999999999433
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=4.3 Score=36.14 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 025344 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (254)
Q Consensus 83 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~ 162 (254)
||.++.| |-.++-. -+.++++.||+.|+...=.++|+. |.+...+++..+-- .-+-+|..
T Consensus 41 GVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~------~l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDE------VLFDLKIM------- 100 (213)
T ss_pred EEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCE------EEEeeccC-------
Confidence 6666666 3333222 468899999999999999999986 44555555443221 11233311
Q ss_pred cccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccCCCce
Q 025344 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 233 (254)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~~kl 233 (254)
|++.-..++. .+.+.+++.++.-.++|++. |-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~tG--------~~~~~il~nl~~l~~~g~~v---~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVVK--------MNLPRVLENLRLLVSEGVNV---IPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHHC--------CCHHHHHHHHHHHHhCCCcE---EEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 1110011211 24677888899999999863 446 5555544322 24455555665543
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=82.69 E-value=10 Score=34.91 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=89.6
Q ss_pred HHHHHHHhhcccccEEeecCccccc-CC----hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSL-MP----KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l-~~----~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+-+.|..+| ||.+=+|+..+.- .| .+.+.+.+.. ..++.+ .+|. . ..+ =++.+.+.|.+
T Consensus 24 ~i~~~L~~~G--v~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~~~~~~--~~~~-----~---~~~-dv~~A~~~g~~ 88 (274)
T cd07938 24 ELIDALSAAG--LRRIEVTSFVSPKWVPQMADAEEVLAGLPR--RPGVRY--SALV-----P---NLR-GAERALAAGVD 88 (274)
T ss_pred HHHHHHHHcC--CCEEEeCCCCCcccccccCCHHHHHhhccc--CCCCEE--EEEC-----C---CHH-HHHHHHHcCcC
Confidence 4455666777 9999999654443 22 2222222221 112222 2232 1 222 37888889999
Q ss_pred EEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGti~--------i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. + .+ +..++
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~----~~---------------~~~~~ 148 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-P----YE---------------GEVPP 148 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C----CC---------------CCCCH
Confidence 9888755433 12 2445567999999999875433332211 1 10 01158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.++...++||+.|- +.|..|...+..+.++++.+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 149 ERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred HHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 9999999999999998664 67888888888888777654
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=82.52 E-value=18 Score=32.61 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. +++-+..+ -|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~-----------------------GG 82 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVG-----------------------GG 82 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEE-----------------------CC
Confidence 4556667777899999988876644 2455566788888773 11112111 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
..+ .+.+++.+++||+.|++ ++.... +.+++.++.++.|.+++++--+
T Consensus 83 i~s----~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 83 IKS----IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 122 67778889999999999 554444 3678899998888888887554
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=82.52 E-value=6.1 Score=33.04 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
|.+-+.-+|+.+|-= .+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 566777778777743 333442 112 56777788888875433 2222 111113667788888888844
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHcCCc
Q 025344 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
+=| =-|.+.+|.++.....+++++.||.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 434 7778889998888788888887754
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=82.49 E-value=34 Score=32.46 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++.++.++.--++|+|+|=|-+-......+.+..+.++.|-+.+
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~ 284 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF 284 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc
Confidence 5788888888888999999988332122222334445554444433
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=6.3 Score=39.20 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|=|+|=+-...++ .++..++++.+++.||.++-|++-
T Consensus 125 I~ea~~~GADavLLI~~~L~--~~~l~~l~~~a~~lGl~~lvEvh~---------------------------------- 168 (454)
T PRK09427 125 IYLARYYGADAILLMLSVLD--DEQYRQLAAVAHSLNMGVLTEVSN---------------------------------- 168 (454)
T ss_pred HHHHHHcCCCchhHHHHhCC--HHHHHHHHHHHHHcCCcEEEEECC----------------------------------
Confidence 67899999999988776654 678889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 238 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP 238 (254)
.+.+++.+++||..|-|..|.+-.- ++..+.-.+|+..+|.+.+ +-|.=
T Consensus 169 -~~El~~al~~~a~iiGiNnRdL~t~--~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 169 -EEELERAIALGAKVIGINNRNLRDL--SIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEeCC
Confidence 3456677999999999999976332 2445566677777775544 44543
|
|
| >PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=82.45 E-value=3 Score=39.27 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 025344 100 PSAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
++...+-|+.+|.+||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 346788899999999999987 46777777 457789999999999999887775
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B .... |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=82.43 E-value=10 Score=36.02 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHcCCcc----cceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSAGLKA----KPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~G~~v----~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
..++|.+.+++++ +|+||++-++-.. ..+.-.++++.+++. ... +| +.+|-
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~P-V~vKl-------------- 218 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVP-LLVKI-------------- 218 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCc-eEEEe--------------
Confidence 6788888888888 9999998655433 344555777777763 100 22 44542
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+|. + +.+++.+.++...++||+.|++=.+
T Consensus 219 ---sp~-~------~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 219 ---APD-L------SDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ---CCC-C------CHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 211 1 3557888999999999999999875
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=16 Score=34.29 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=56.6
Q ss_pred HHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 108 EDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+.+.+.||+.|||+=|+=. + .++.-.++++.+++. .. + -+++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~-pv~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-V-PVTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-C-ceEEEEEc---c--------------
Confidence 3445689999999999631 1 144455667766553 10 1 25555321 1
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccccCCCccHHHHHHHHhccC
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|. .+..+.++.++..-++|++.|.+-+| +.|. |....+.+.++.+.++
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~--G~a~~~~i~~ik~~~~ 194 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSIRAVKQKVS 194 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccC--CCcChHHHHHHHHhcC
Confidence 10 01234577788888999999999998 3443 3334566666665443
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=13 Score=34.86 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=55.0
Q ss_pred eecCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 025344 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (254)
Q Consensus 58 Kfg~GT~~l~~~~~l~eKi~l~~~~---gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---- 127 (254)
|-|.|++.+-..+.+.+.++-.++. +++|+- .||-+ .+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~------~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDS------GERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCC------chHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888899999999998888874 354442 24411 1235688888999999999999887522
Q ss_pred ChhHHHHHHHHHHHc
Q 025344 128 PEETLLRYVRLVKSA 142 (254)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (254)
+.-++ +.|+++++.
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 11133 778888884
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=37 Score=30.42 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccC-ChhHHHHHHHHHHhCCc-------------eecCCcHHHHHHHhCCchHHH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDV-------------YVSTGDWAEHLIRNGPSAFKE 105 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~-~~~~l~eKi~l~~~~gV-------------~v~~Gtl~E~a~~qg~~~~~~ 105 (254)
+..+.++++..-+-+|.+=+|.=.+-.. +-..+++..+.+.++|+ ++..=+.+-. + +. ..++
T Consensus 17 ~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~~ 92 (244)
T PRK13125 17 VESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLDN 92 (244)
T ss_pred HHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHHH
Confidence 3555555554333399999998555442 33445555544443333 2210011111 1 22 5889
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++.-
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999984433321 356679999999999998888776
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.19 E-value=2.6 Score=40.65 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCceecC--CcH--HH------------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--
Q 025344 72 IEEVVKRAHQHDVYVST--GDW--AE------------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI-- 127 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~--Gtl--~E------------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i-- 127 (254)
-++-+++||.+||.|-. |.. .| -.+.- .-++-.+.+++.|.|++=||-||.-=
T Consensus 125 Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T---~PeeA~~Fv~~TgvD~LAvaiGT~HG~Y 201 (347)
T PRK09196 125 TRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT---DPEEAADFVKKTQVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCC---CHHHHHHHHHHhCcCeEhhhhccccCCC
Confidence 47889999999997763 432 11 11112 35667777889999999999999721
Q ss_pred -----Ch--hHHHHHHHHHHHcCCcccceeeeecCCCCCCC---------ccccccccccccCCCccccccCHHHHHHHH
Q 025344 128 -----PE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS---------DRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 128 -----~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~---------~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
|. .-..++++.+++. .+-.| =|.++.|.++. ++|=. +++=+| -+++
T Consensus 202 k~~~~p~~~~LdfdrL~eI~~~-v~~vP--LVLHGgSG~~~~~~~~~~~~g~~~~-~~~G~~--------------~e~i 263 (347)
T PRK09196 202 KFTRKPTGDVLAIDRIKEIHAR-LPNTH--LVMHGSSSVPQELLDIINEYGGDMP-ETYGVP--------------VEEI 263 (347)
T ss_pred CCCCCCChhhccHHHHHHHHhc-CCCCC--EEEeCCCCCCHHHHHHHHHhcCCcc-ccCCCC--------------HHHH
Confidence 21 1223344544442 10011 15555554410 00000 000001 4788
Q ss_pred HHHHHcCCcEEEEecc
Q 025344 192 ERCLEAGADMIMIDSD 207 (254)
Q Consensus 192 ~~dLeAGA~~ViiEar 207 (254)
++.++.|..+|=|-.+
T Consensus 264 ~~ai~~GI~KINi~Td 279 (347)
T PRK09196 264 QEGIKHGVRKVNIDTD 279 (347)
T ss_pred HHHHHCCCceEEeChH
Confidence 9999999999977764
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=6.8 Score=37.02 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHcCC
Q 025344 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAGL 144 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G~ 144 (254)
+.|++.+++|++||+.+.. ...-+.. . ..+.++++.++++|+. .+-++=.+ -.++++++.++|+++++.|.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~ 266 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGV 266 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 6788888999999976632 1111111 1 1455677777888885 23333332 25677777899999999998
Q ss_pred cccce
Q 025344 145 KAKPK 149 (254)
Q Consensus 145 ~v~~E 149 (254)
.|.+.
T Consensus 267 ~v~~~ 271 (391)
T PRK05985 267 AIMTN 271 (391)
T ss_pred eEEEe
Confidence 87654
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=82.05 E-value=24 Score=28.16 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=87.6
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 344455556677888889999988888 488999999888 5544 34 2222 1 5777888888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+=.-.+. .+.+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~-------------------------~~~~ 155 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGD-------------------------EDEE 155 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCC-------------------------ChhH
Confidence 9999877653 344778889999999888877766552111 0235
Q ss_pred HHHHHHHHHHHcC-CcEEEEec
Q 025344 186 LLIRRAERCLEAG-ADMIMIDS 206 (254)
Q Consensus 186 ~~i~~~~~dLeAG-A~~ViiEa 206 (254)
++++.++...+.+ ++.+.+..
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~ 177 (204)
T cd01335 156 DDLEELELLAEFRSPDRVSLFR 177 (204)
T ss_pred HHHHHHHHHHhhcCcchhhhhh
Confidence 5677777777776 55554443
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=81.93 E-value=2 Score=39.08 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVK 140 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~ 140 (254)
+.+..-=++++.-++++.- + ||-. .+..+.+-++...+.|.-.|-|-|.- --+|.++-..=|+.++
T Consensus 56 e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~ 130 (238)
T PF13714_consen 56 EMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAV 130 (238)
T ss_dssp HHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHH
Confidence 3444445566777888875 2 4422 02256667778889999999999881 1357887777777776
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHH
Q 025344 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI 220 (254)
Q Consensus 141 ~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~ 220 (254)
+.-= -+.|-+- . .-|. .+. .....++.|++++...+||||.|.+++- ...+.
T Consensus 131 ~a~~--~~~~~I~---A----RTDa----~~~-------~~~~~deaI~R~~aY~eAGAD~ifi~~~--------~~~~~ 182 (238)
T PF13714_consen 131 DARR--DPDFVII---A----RTDA----FLR-------AEEGLDEAIERAKAYAEAGADMIFIPGL--------QSEEE 182 (238)
T ss_dssp HHHS--STTSEEE---E----EECH----HCH-------HHHHHHHHHHHHHHHHHTT-SEEEETTS--------SSHHH
T ss_pred Hhcc--CCeEEEE---E----eccc----ccc-------CCCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCHHH
Confidence 5200 0012220 0 0111 010 1235899999999999999999999975 34566
Q ss_pred HHHHHhccC-CCceEE
Q 025344 221 IAKVIGRLG-LEKTMF 235 (254)
Q Consensus 221 i~~ii~~l~-~~klif 235 (254)
++++.++++ +=+++.
T Consensus 183 i~~~~~~~~~Pl~v~~ 198 (238)
T PF13714_consen 183 IERIVKAVDGPLNVNP 198 (238)
T ss_dssp HHHHHHHHSSEEEEET
T ss_pred HHHHHHhcCCCEEEEc
Confidence 888888877 433333
|
... |
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=81.92 E-value=6.9 Score=35.69 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++.-+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455566788999999999999999999999999999988776543311 11
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 025344 185 DLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE 205 (254)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 345688899999999973
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=81.91 E-value=13 Score=37.85 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+..+.-.+-|.|.+=+=|=+-.- .++..+++|+++.+.=|.+++ +|= -+-+.+|+. +.+++
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~-vGG-----GIr~~~d~~-~~~~~-------- 335 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLT-VGG-----GIRDFTDAN-GRYYS-------- 335 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEE-EcC-----Ccccccccc-ccccc--------
Confidence 34444457799988776655422 233348899999985443322 221 111112221 22222
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccc------cccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDV------CKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi------~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.++.+++-|++||++|+|-+.-+ |.+.-...+++++++.+++|-.+|+.=-.
T Consensus 336 ------~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 336 ------SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred ------hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 27999999999999999988533 33345556899999999998776765433
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=81.88 E-value=18 Score=33.83 Aligned_cols=134 Identities=20% Similarity=0.337 Sum_probs=79.0
Q ss_pred hHHHHHHHhhccc-cc-EEe-ecCccc---ccCChhHHHHHHHHHHhCC-c-eecCCcHHHHHHHhCCch-HHHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCK 111 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID-~lK-fg~GT~---~l~~~~~l~eKi~l~~~~g-V-~v~~Gtl~E~a~~qg~~~-~~~yl~~~k 111 (254)
+.++.+++..+.. -+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.++
T Consensus 53 ~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~ 124 (313)
T TIGR01210 53 NQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELR 124 (313)
T ss_pred HHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHH
Confidence 3445555554432 11 235 533332 3567777888888888776 3 211111 1222 267888899
Q ss_pred HcCCC-EEEecCCcccCCh-------------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 112 QVGFD-TIELNVGSLEIPE-------------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 112 ~lGF~-~IEISdGti~i~~-------------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
+.|++ .|+| |.-+.++ ++-.+.++.++++|+.|..-|=...|. .++
T Consensus 125 ~aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~--------------~se---- 184 (313)
T TIGR01210 125 KIGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPF--------------LSE---- 184 (313)
T ss_pred HcCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--------------CCh----
Confidence 99987 4665 4444444 444578999999999987766553221 000
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++.+++++.++...+.+ +.|-+-.
T Consensus 185 ---~ea~ed~~~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 185 ---KEAIADMISSIRKCIPVT-DTVSINP 209 (313)
T ss_pred ---hhhHHHHHHHHHHHHhcC-CcEEEEC
Confidence 024677888888888877 7666543
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.87 E-value=22 Score=31.35 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (254)
+.+++|++.++++|+ .+|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 347788888888888 33446621 1 1223556777777532 321 2 3345555666666
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 140 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 140 ~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
++. ...++.++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 653 466777777731 3455566889999988744
|
|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.86 E-value=8.3 Score=36.03 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+..-.+..|+-|-++|-+.-| ++..+.|+++.++|.-|.-.+|.--..-.. +|.+- -.-...+
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~-------~GGyk----vqGr~~~ 158 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQSVNW-------LGGYK----VQGRTEE 158 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhhhhc-------cCCee----eecCCHH
Confidence 444456678899999999999 778899999999999999999984221010 01111 0111234
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+++++.+++-=+|||..|.+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLEC 182 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEec
Confidence 688999999999999999999998
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=81.81 E-value=17 Score=32.44 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=72.0
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+.+.+.+.+.-. |++=+= +|.-.-| ..|.+.+...|++++.++- .|+=|... |.++|||
T Consensus 53 T~~ev~~l~~aGa---dIIAlD-aT~R~Rp-~~l~~li~~i~~~~~l~MADist~ee~~~-------------A~~~G~D 114 (192)
T PF04131_consen 53 TLKEVDALAEAGA---DIIALD-ATDRPRP-ETLEELIREIKEKYQLVMADISTLEEAIN-------------AAELGFD 114 (192)
T ss_dssp SHHHHHHHHHCT----SEEEEE--SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSHHHHHH-------------HHHTT-S
T ss_pred CHHHHHHHHHcCC---CEEEEe-cCCCCCC-cCHHHHHHHHHHhCcEEeeecCCHHHHHH-------------HHHcCCC
Confidence 4566666666444 444443 4666777 6799999999999977776 46655443 3579999
Q ss_pred EEEec-CCcccC---ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 117 TIELN-VGSLEI---PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 117 ~IEIS-dGti~i---~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
.|=-- .|..+= ...+ .+||+++.+.+..|+-|=++. + -++++
T Consensus 115 ~I~TTLsGYT~~t~~~~pD-~~lv~~l~~~~~pvIaEGri~-----------------------------t----pe~a~ 160 (192)
T PF04131_consen 115 IIGTTLSGYTPYTKGDGPD-FELVRELVQADVPVIAEGRIH-----------------------------T----PEQAA 160 (192)
T ss_dssp EEE-TTTTSSTTSTTSSHH-HHHHHHHHHTTSEEEEESS-------------------------------S----HHHHH
T ss_pred EEEcccccCCCCCCCCCCC-HHHHHHHHhCCCcEeecCCCC-----------------------------C----HHHHH
Confidence 98531 111111 2233 488999888877777775551 1 46788
Q ss_pred HHHHcCCcEEEEec
Q 025344 193 RCLEAGADMIMIDS 206 (254)
Q Consensus 193 ~dLeAGA~~ViiEa 206 (254)
+.|++||+.|+|=+
T Consensus 161 ~al~~GA~aVVVGs 174 (192)
T PF04131_consen 161 KALELGAHAVVVGS 174 (192)
T ss_dssp HHHHTT-SEEEE-H
T ss_pred HHHhcCCeEEEECc
Confidence 99999999999854
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=81.78 E-value=2.5 Score=40.13 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 025344 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (254)
Q Consensus 70 ~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~---yl~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (254)
..+.|.|+-.|+. +|++++-.+.+ -| ...++ +.+.+.+.|+|.|+||.|+...+ +.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~----~G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHP----GG-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCC----CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4566777666665 34555422222 12 13444 44555566999999999985421 22234566
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCCC
Q 025344 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (254)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~ 215 (254)
+.+++. +++ +..-+| ... | .+.+++.|+.| ||+|++ +|++.-
T Consensus 268 ~~ik~~-------~~i--pVi~~G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ia---- 310 (337)
T PRK13523 268 EHIREH-------ANI--ATGAVG--------LIT-----------S----GAQAEEILQNNRADLIFI-GRELLR---- 310 (337)
T ss_pred HHHHhh-------cCC--cEEEeC--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHHHh----
Confidence 666653 222 110011 111 2 46688889988 899876 554332
Q ss_pred ccHHHHHHHHhccCCC
Q 025344 216 LRADIIAKVIGRLGLE 231 (254)
Q Consensus 216 ~r~d~i~~ii~~l~~~ 231 (254)
+++++.++.+.+..+
T Consensus 311 -dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 311 -NPYFPRIAAKELGFE 325 (337)
T ss_pred -CccHHHHHHHHcCCC
Confidence 356677777666543
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=41 Score=30.63 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=101.3
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC----hhHHHHHHHHHHhCCceecCC--c--HH-
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVSTG--D--WA- 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~----~~~l~eKi~l~~~~gV~v~~G--t--l~- 92 (254)
+..|+.-++.+|. .+...+..++.+..|= .+..+.|-+.-+- .+.+.+..+++++..| +.-| | +.
T Consensus 25 ~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~-vaIGEiGLDy~~ 98 (258)
T PRK10425 25 FAAGVNGMLITGT----NLRESQQAQKLARQYP-SCWSTAGVHPHDSSQWQAATEEAIIELAAQPEV-VAIGECGLDFNR 98 (258)
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCC-CEEEEEEeCcCccccCCHHHHHHHHHhccCCCE-EEEeeeeecccc
Confidence 3458888999997 5678999999998885 4888888876442 3334444444443332 2224 3 22
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
+ ...++. -|+..++.|++++-..|==|-+.. + ++++.+++..-+. + =++-...+ +
T Consensus 99 ~~~~~~~Q~~--vF~~ql~lA~~~~~Pv~iH~r~a~----~---~~l~iL~~~~~~~-~-~~i~H~fs-----G------ 156 (258)
T PRK10425 99 NFSTPEEQER--AFVAQLAIAAELNMPVFMHCRDAH----E---RFMALLEPWLDKL-P-GAVLHCFT-----G------ 156 (258)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHhCCCeEEEEeCch----H---HHHHHHHHhccCC-C-CeEEEecC-----C------
Confidence 1 112334 799999999999998875554332 3 3444444421011 1 12321111 1
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+.+++.++.|.+.=+- --++.. -+...+.++++.+|+++|+.|...|
T Consensus 157 -------------~----~~~~~~~l~~G~~~si~--g~i~~~---~~~~~~~~~~~~ipldrlLlETDaP 205 (258)
T PRK10425 157 -------------T----REEMQACLARGLYIGIT--GWVCDE---RRGLELRELLPLIPAERLLLETDAP 205 (258)
T ss_pred -------------C----HHHHHHHHHCCCEEEEC--ceeecc---cccHHHHHHHHhCChHHEEEeccCC
Confidence 1 66788889998776441 112211 1334677889999999999997655
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=81.73 E-value=36 Score=31.93 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (254)
.+.++.+.|++.|.++|.+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 35788889999999999999887544
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=7.5 Score=36.73 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC--
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG-- 99 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID-~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~-~qg-- 99 (254)
|.-+.-|-+.+-++..++++++....++. ...+ |.-..|..+-.++++.++++|| .++-| ++=+..+ .-|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56667676532378889999998877721 1222 2334566666899999999999 78778 6755444 223
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1235556778888999854 555565566778888889999887654
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=17 Score=32.05 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=77.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CC-----cHHHH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG-----DWAEH 94 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~G-----tl~E~ 94 (254)
.+++.+++=|+ . .+...+.+++.-.+.| -.||..+.+++.+++..+.+.+..|.++ .| ||.+.
T Consensus 75 ~~~~l~v~GGi--~-~~~~~~~~~~~Ga~~v-----~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~ 146 (241)
T PRK13585 75 VGVPVQLGGGI--R-SAEDAASLLDLGVDRV-----ILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEK 146 (241)
T ss_pred cCCcEEEcCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCccc
Confidence 35666666554 2 3455555666544544 3377777666666666666544333222 12 22211
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC----CcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV----GSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
. .....++.+.+.+.|++.|=+.+ |+..-+ -.++|+.+.+. .+.+...=|
T Consensus 147 ~----~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~i~~~~~iPvia~GG------------------ 201 (241)
T PRK13585 147 T----GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGV---NTEPVKELVDSVDIPVIASGG------------------ 201 (241)
T ss_pred C----CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCC---CHHHHHHHHHhCCCCEEEeCC------------------
Confidence 0 11567778888889999887743 333222 23456666552 111111111
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 215 (254)
+.++++ ++..+++||+.|++ ++.++.+.-.
T Consensus 202 -----------I~~~~d----i~~~~~~Ga~gv~v-gsa~~~~~~~ 231 (241)
T PRK13585 202 -----------VTTLDD----LRALKEAGAAGVVV-GSALYKGKFT 231 (241)
T ss_pred -----------CCCHHH----HHHHHHcCCCEEEE-EHHHhcCCcC
Confidence 123444 33457789999999 8878776554
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=81.37 E-value=10 Score=38.32 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 73 EEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
.+-+++++++|..|.. .. ||. ++.-.++.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 4558899999998754 32 533 334556689999999999999999999988888888888999999874 22 1224
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii 225 (254)
++- |--|...-+-.....++|||+. ||+- |+=+..||.....+.--+
T Consensus 202 ~vH--------------------------~HND~GlAvANslaAv~AGA~~--Vd~TinGiGERaGNa~Le~v~~~L 250 (526)
T TIGR00977 202 GIH--------------------------AHNDSGTAVANSLLAVEAGATM--VQGTINGYGERCGNANLCSLIPNL 250 (526)
T ss_pred EEE--------------------------ECCCCChHHHHHHHHHHhCCCE--EEEecccccCccCCCcHHHHHHHH
Confidence 442 1123445577888899999996 5664 888888887766554433
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=81.33 E-value=6.6 Score=35.04 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+..+.+.+-|+++|||.- ..+...+.|+++++.. +++-+ |. |-.++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466788899998731 22222 21 11233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++++..++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 7789999999999997543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=39 Score=32.34 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=67.6
Q ss_pred ecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 025344 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (254)
Q Consensus 59 fg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~---~qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (254)
|..|-..=.+-+.+.+-++..++. ++.+..=+-.|+++ .-| -..++.++.+|+.|.+ ..|+++-.+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 556665545667778888888864 45444324555552 223 4689999999999998 899998543
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecC
Q 025344 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~ 155 (254)
.++.++|++.|+.|++.|+++-+ |.-++
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G 208 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFG 208 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEe
Confidence 56779999999999999988877 44434
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=81.24 E-value=40 Score=31.89 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=76.9
Q ss_pred CcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (254)
.|...-.+-+.+.+-++..+++. +.++.=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 55554456677899999999874 5555446788775442 124688899999999864 55533 111
Q ss_pred -cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.+++.+.|+.+++.|+++.+ |...+.. ++++++++.+..--+.+.+
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~s--g~i~Glg------------------------Et~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNA--TMLYGHI------------------------ETPAHRVDHMLRLRELQDE 232 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcce--EEEeeCC------------------------CCHHHHHHHHHHHHHhhHh
Confidence 46778889999999999998866 4333321 1367777777766666664
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=81.16 E-value=47 Score=31.78 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=86.3
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCC-hhHHHHHHHHHHhC--CceecCCcHHHHHHH---hCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIR---NGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~-~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~---qg~~~~~~yl~~~k 111 (254)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..++. +|.++.=+..|+.+. .| ...++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 34444444443333 3666777777555444 45677888888874 455543356666543 23 34688999999
Q ss_pred HcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 112 QVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 112 ~lGF~~I-EISdGt----------i-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
+.|.+.+ |-|.-+ - ..+.++|++.++.+++.|+++-+ |.-.+..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~g---------------------- 226 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGHV---------------------- 226 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeCC----------------------
Confidence 9999998 333221 1 35778999999999999999865 4433321
Q ss_pred cccCHHHHHHHHHHHHHcCCcE
Q 025344 180 YVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
++.+++++.+..--+.+.++
T Consensus 227 --Et~edrv~~l~~lr~l~~~~ 246 (371)
T PRK07360 227 --ETPEHRIDHLLILREIQQET 246 (371)
T ss_pred --CCHHHHHHHHHHHHHhchhh
Confidence 13677777777666666555
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.07 E-value=17 Score=35.74 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHhhcccccEEeecC--------cccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 42 VLEDIFESMGQFVDGLKFSG--------GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~--------GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
.++.+++.-.+-|.++.=.| +++.-..-+.+.+-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHc
Confidence 34555555555554443322 222222334566778999999976663 34444466666777788888899
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
|.+.|=+-|-.--..+.+-.++|+.+++. +.-+ ...+-||--|....+.....
T Consensus 159 ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-------v~~~--------------------~~l~~H~HnD~G~AvANsla 211 (409)
T COG0119 159 GADRINLPDTVGVATPNEVADIIEALKAN-------VPNK--------------------VILSVHCHNDLGMAVANSLA 211 (409)
T ss_pred CCcEEEECCCcCccCHHHHHHHHHHHHHh-------CCCC--------------------CeEEEEecCCcchHHHHHHH
Confidence 99999999999888889999999999984 2100 01122333456667889999
Q ss_pred HHHcCCcEEEEecccccccCCCccHHHHH
Q 025344 194 CLEAGADMIMIDSDDVCKHADSLRADIIA 222 (254)
Q Consensus 194 dLeAGA~~ViiEargi~d~~g~~r~d~i~ 222 (254)
.++|||+.|=.=-.||=+..||.--..+.
T Consensus 212 Av~aGa~~v~~TvnGiGERaGna~l~~v~ 240 (409)
T COG0119 212 AVEAGADQVEGTVNGIGERAGNAALEEVV 240 (409)
T ss_pred HHHcCCcEEEEecccceeccccccHHHHH
Confidence 99999998744334776777776554444
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.07 E-value=27 Score=34.21 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=86.8
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChhH
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEET 131 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~i~~~~ 131 (254)
.|+-+=||+||-.+++++.|++.++..+++=- ...--.|+.+--+|.. =.+.++.+++.||+ -||=|--+++.+.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 48888899999999999999999999987641 0011234444344444 35678888999999 5566666666554
Q ss_pred H------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 132 L------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 132 r------------~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
+ ...+..+++.||.-+. +-.-.+ + | .++.+++.+..+..++.|.
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg---------------l-P-------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG---------------L-P-------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC---------------C-C-------CCCHHHHHHHHHHHHhCCC
Confidence 4 4567777776666332 222111 1 1 2468999999999999999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|=+.+
T Consensus 219 dhis~y~ 225 (416)
T COG0635 219 DHLSLYS 225 (416)
T ss_pred CEEEEee
Confidence 9998777
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=81.05 E-value=8 Score=39.08 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=95.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc---hHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS---AFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~---~~~~yl~~~k~lGF~~I 118 (254)
.+-..|..+| ||.+=.||-.+.-...+.+++..+.-. -+..++. |.= ...++ ..+.-++.+.+.|.+.|
T Consensus 27 ~Ia~~L~~~G--Vd~IE~G~p~~s~~d~~~v~~i~~~~~-~~~~i~~--~~r---~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 27 RIAERLDDLG--IHYIEGGWPGANPKDVQFFWQLKEMNF-KNAKIVA--FCS---TRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCChHHHHHHHHHHHhCC-CCcEEEE--Eee---ecCCCCCCchHHHHHHHhcCCCCEE
Confidence 4455677777 999999986655444444444433110 1233332 110 00111 34677888899999999
Q ss_pred EecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti--------~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-|...+- ..+.++=+ +.|+.+++.|+.|. |.-.+.. |. + ..+++.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D~--------~------r~~~~~ 155 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------DG--------Y------KANPEY 155 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------ec--------c------cCCHHH
Confidence 9876653 33444333 44888999988763 4332100 10 0 115899
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 156 l~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 156 ALATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred HHHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 99999999999999986 57999999998888888665
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=80.97 E-value=22 Score=33.36 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccC-----CCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA-----DSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~-----g~~r~d~i~~ii~~l~ 229 (254)
++++.++.++..-++|.++|-+=+.+.+... -.+..+.+.+|-+.++
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 5788888888888899998876332222111 1223455566655554
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=33 Score=32.13 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.+..|-+.||+.|=+.-..+++.+-- =.++++.|...|.-|--|+|.=-+. +-+...+.. ...+|
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~-e~~~~~~~~-~~~~T---------- 155 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGT-EDDITVDER-EAAMT---------- 155 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCc-cCCCCcccc-hhhcC----------
Confidence 467778889999999976665443322 2367888999999999999984221 111000000 01122
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
||++ ++++++ -|+|.+-|== -|+|...-+++-+.+++|-+.++
T Consensus 156 ~pe~----a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~ 202 (284)
T PRK12857 156 DPEE----ARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN 202 (284)
T ss_pred CHHH----HHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 4544 445553 3888776543 29998878999999999987765
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=80.77 E-value=28 Score=28.09 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=55.9
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHH--HHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l--~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
...+..+.+.+. +|++-++.-.......... +....+.+.+++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 8888888644333322212 124455666777655532210000 011122468899999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc--CCccccee
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKF 150 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~ 150 (254)
+|..+....+. .-.++++.+++. ++.+...+
T Consensus 89 ~l~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~~~ 121 (200)
T cd04722 89 EIHGAVGYLAR-EDLELIRELREAVPDVKVVVKL 121 (200)
T ss_pred EEeccCCcHHH-HHHHHHHHHHHhcCCceEEEEE
Confidence 99998875533 334667777765 45444433
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.57 E-value=23 Score=33.05 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.+.++++-+-|.+.|=+.-.| ..++.++|.++++.+++. .+.+-+. =+|
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~-------~~grvpv-iaG------------------ 79 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA-------VGGRVPV-IAG------------------ 79 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH-------HCCCCcE-EEe------------------
Confidence 56777888888899988765443 389999999999999983 4332110 001
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
-+..+..+-|+.++..-++|||-|++=.-=.+....+---+-...|++..++.-++.--|.
T Consensus 80 ~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 80 VGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred cCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1122478889999999999999999977644444433334445667777776667777663
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=80.53 E-value=14 Score=34.32 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
.+.+..+.+++.|||.|||+-|+=. + ..+.-.++++.+++. + +| +.+|... |
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~p-v~vKir~---g------- 141 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IP-VTVKIRI---G------- 141 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CC-EEEEEEc---c-------
Confidence 4555556678899999999877521 1 123334556665542 2 22 4555221 1
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccccCCCccHHHHHHHHhccC
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|. .+....++.++...++|++.|.+-+| +-|. |....+.+.+|.+.++
T Consensus 142 --------~~----~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 142 --------WD----DAHINAVEAARIAEDAGAQAVTLHGRTRAQGYS--GEANWDIIARVKQAVR 192 (319)
T ss_pred --------cC----CCcchHHHHHHHHHHhCCCEEEEEcccccccCC--CchhHHHHHHHHHcCC
Confidence 10 01223467777778899999999887 2221 3334455555555443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination | Back alignment and domain information |
|---|
Probab=80.47 E-value=6.1 Score=36.29 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHhhcccccEEeecCccc----ccCChhHHHHHHHHHHhCCceecC--CcH---------HHHHHHhCCc----hHHHH
Q 025344 46 IFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEY 106 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~----~l~~~~~l~eKi~l~~~~gV~v~~--Gtl---------~E~a~~qg~~----~~~~y 106 (254)
.++..++.++.|=.-|-.. .+.+. ...+.+..+|++|+++.+ |+| |..++. ++. -++..
T Consensus 18 ~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~-~~~~r~~fi~~i 95 (313)
T cd02874 18 SLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLS-NPEARQRLINNI 95 (313)
T ss_pred HHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhc-CHHHHHHHHHHH
Confidence 4445555666554333210 12222 246889999999998886 554 333332 222 36778
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (254)
++.+++.|||.|+|.=-. ++.+++..++..+++
T Consensus 96 v~~l~~~~~DGidiDwE~--~~~~d~~~~~~fl~~ 128 (313)
T cd02874 96 LALAKKYGYDGVNIDFEN--VPPEDREAYTQFLRE 128 (313)
T ss_pred HHHHHHhCCCcEEEeccc--CCHHHHHHHHHHHHH
Confidence 888999999999996433 445566555555443
|
CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=80.39 E-value=28 Score=32.60 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++..|-+.||+.|=+.-..+++.+--+ .++++.|...|.-|--|+|.=-+.. -+...+.. ...+|
T Consensus 90 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e-~~~~~~~~-~~~~T--------- 158 (288)
T TIGR00167 90 EEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEE-DGVSVADE-SALYT--------- 158 (288)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcc-CCcccccc-cccCC---------
Confidence 37788888999999999866655443222 3678888999999999999842211 00000000 01122
Q ss_pred cCHHHHHHHHHHHHH-cCCcEEEEecc---cccccCCC-ccHHHHHHHHhccC
Q 025344 182 EDVDLLIRRAERCLE-AGADMIMIDSD---DVCKHADS-LRADIIAKVIGRLG 229 (254)
Q Consensus 182 ~d~~~~i~~~~~dLe-AGA~~ViiEar---gi~d~~g~-~r~d~i~~ii~~l~ 229 (254)
|| ++++++++ -|.|.+-|==- |+|...-+ ++.+.+.+|-+.++
T Consensus 159 -~p----eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~ 206 (288)
T TIGR00167 159 -DP----EEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN 206 (288)
T ss_pred -CH----HHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 44 46777776 49998877543 99988777 99999999988775
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=80.39 E-value=20 Score=31.68 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~---~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
..-++.+.+.+.|++ .+.+| +|+- . ..-..+|+++++. ++++--. .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~-~~~~~~i~~i~~~-------~~~pv~~-----~G-------------- 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--R-ETMLDVVERVAEE-------VFIPLTV-----GG-------------- 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--C-cccHHHHHHHHHh-------CCCCEEE-----eC--------------
Confidence 567788888899999 55555 3322 2 2234778887773 2211000 01
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
|..+ .+.+++.+++||+.|++ +++++. +++.+.++++.++-+++++--.
T Consensus 79 --GI~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 79 --GIRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred --CCCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 1112 56677778899999998 565654 3677888888887778885543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=16 Score=32.99 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++.+...+.|++.+=|=|=.-......-..+|+++.+.-+. | +-+ | + |..|
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v-------G--G----------------GIrs- 84 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV-------G--G----------------GIRD- 84 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE-------e--C----------------CcCC-
Confidence 34444456899888776544333555556888888873221 1 222 1 0 1112
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEE
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klif 235 (254)
++.+++.|++||++|+|=+.-+. +++++.++++++|.+++++
T Consensus 85 ---~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 85 ---IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred ---HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEE
Confidence 67888899999999998655333 4578888888888888774
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=9.3 Score=36.08 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccc
Q 025344 107 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
.+.|++.|||.|||+-|+= .-..+.-.++++.+++. + +| +.+|.- ++..+
T Consensus 83 A~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~--------- 146 (333)
T PRK11815 83 AKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDD--------- 146 (333)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCC---------
Confidence 3456778999999997752 11223334666666653 2 12 444321 11000
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc----ccccC-----CCccHHHHHHHHhcc
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD----VCKHA-----DSLRADIIAKVIGRL 228 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg----i~d~~-----g~~r~d~i~~ii~~l 228 (254)
..+..++++.++...++|++.+++-+|. -|... +....+.+.++.+.+
T Consensus 147 --------~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~ 203 (333)
T PRK11815 147 --------QDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF 203 (333)
T ss_pred --------CcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC
Confidence 1135667888888899999999999872 12211 224566666665443
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=80.34 E-value=4.2 Score=36.09 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+..+.+.+-|+.+|||.--| ....+.|+.+++. .|++-+ |+ |-.++
T Consensus 21 ~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~--------- 69 (196)
T PF01081_consen 21 DAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT--------- 69 (196)
T ss_dssp GHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S---------
T ss_pred HHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC---------
Confidence 55667788899999999997654 5567889988774 133322 21 11133
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++.++|||++++-=+
T Consensus 70 ------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 ------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp ------HHHHHHHHHHT-SEEEESS
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 7899999999999998654
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=47 Score=30.60 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=96.8
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCC--hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~--~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
......+..+..=+||+|.|.--..-.+ -+.++..+...+.+ +..+.+-.|.++--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999952111111 12233334444443 445555566664322221 234677888999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.+=|... |--++.++..++++.++++|+. .|. . || +. .+
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL---A---GS---------L~---------------~~ 192 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLM----SAL---A---GS---------LK---------------FE 192 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccH----hHh---c---cc---------Cc---------------hh
Confidence 9988643 2369999999999999998765 333 1 11 11 33
Q ss_pred HHHHHHHcCCcEEEEeccccc---ccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVC---KHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~---d~~g~~r~d~i~~ii~~l~ 229 (254)
.+..-..-+.|++=+=+- +| |.++.++.+.|.++.+.+.
T Consensus 193 dip~L~~l~pD~lGfRga-vC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 193 DIPALKRLGPDILGVRGA-VCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred hHHHHHhcCCCEEEechh-ccCCCCcccccCHHHHHHHHHHhh
Confidence 333446678887755332 34 5679999999999987765
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=80.28 E-value=24 Score=31.53 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=98.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCCh----hHHHHHHHH--HHhCCceecC--C-cHH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK----PFIEEVVKR--AHQHDVYVST--G-DWA 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~----~~l~eKi~l--~~~~gV~v~~--G-tl~ 92 (254)
+..|++-++..+. .+..++..++.+..|=+.+..++|-+.-+-. +.+...-++ +++..+..-. | .+.
T Consensus 24 ~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~ 99 (255)
T PF01026_consen 24 REAGVSAIIIVST----DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYY 99 (255)
T ss_dssp HHTTEEEEEEEES----SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETT
T ss_pred HHcCCCEEEEcCC----CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcc
Confidence 4568998988887 4568889999999999999999997765432 223233333 3444432111 3 231
Q ss_pred H-----HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 93 E-----HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 93 E-----~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
. ...+.. -|.+.++.|++++-..+==+-+ .-.++++.+++.+.. .. -++-...+ +
T Consensus 100 ~~~~~~~~~Q~~--vF~~ql~lA~~~~~pv~iH~r~-------a~~~~l~il~~~~~~-~~-~~i~H~f~-----g---- 159 (255)
T PF01026_consen 100 WRNEEDKEVQEE--VFERQLELAKELNLPVSIHCRK-------AHEELLEILKEYGPP-NL-RVIFHCFS-----G---- 159 (255)
T ss_dssp TTSSSGHHHHHH--HHHHHHHHHHHHTCEEEEEEES-------HHHHHHHHHHHTTGG-TS-EEEETT-------S----
T ss_pred cccCCcHHHHHH--HHHHHHHHHHHhCCcEEEecCC-------cHHHHHHHHHhcccc-ce-eEEEecCC-----C----
Confidence 1 123333 7999999999999987744444 223677777776521 11 33432211 1
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+--. ++..+ .+...++++.+|+++|+.|...|
T Consensus 160 ---------------~----~~~~~~~~~~g~~~S~~~~--~~~~~----~~~~~~~~~~ip~drillETD~P 207 (255)
T PF01026_consen 160 ---------------S----PEEAKKFLDLGCYFSFSGA--ITFKN----SKKVRELIKAIPLDRILLETDAP 207 (255)
T ss_dssp --------------------HHHHHHHHHTTEEEEEEGG--GGSTT----SHHHHHHHHHS-GGGEEEE-BTT
T ss_pred ---------------C----HHHHHHHHhcCceEEeccc--ccccc----cHHHHHHHhcCChhhEEEcCCCC
Confidence 1 5566677777665433211 22211 34477788999999999998754
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=80.27 E-value=17 Score=35.10 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+|+| +.+++.+|=|+|=+=...+ ++++..++++.+++.||.|+.|++-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVEVH~----------------------------- 239 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIEVHD----------------------------- 239 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEEeCC-----------------------------
Confidence 3444 6788899999987766655 5778999999999999999999876
Q ss_pred cCHHHHHHHHHHHHHc-CCcEEEEecccccccCCCccHHHHHHHHh-----ccCCCce--EEecC-CchhHHHHHHHhCC
Q 025344 182 EDVDLLIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIG-----RLGLEKT--MFEAT-NPRTSEWFIRRYGP 252 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeA-GA~~ViiEargi~d~~g~~r~d~i~~ii~-----~l~~~kl--ifEAP-~k~qQ~~~I~~~Gp 252 (254)
-+++++.|++ ||..|=|..|.+-.= ++.-+.-.+++. .++++.+ +=|.= .-..+...+++.|.
T Consensus 240 ------~~ElerAl~~~ga~iIGINNRdL~Tf--~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~Ga 311 (338)
T PLN02460 240 ------EREMDRVLGIEGVELIGINNRSLETF--EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGV 311 (338)
T ss_pred ------HHHHHHHHhcCCCCEEEEeCCCCCcc--eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCC
Confidence 4456677997 999999999966221 222334455555 4532332 33433 33355666666665
Q ss_pred C
Q 025344 253 K 253 (254)
Q Consensus 253 ~ 253 (254)
|
T Consensus 312 d 312 (338)
T PLN02460 312 K 312 (338)
T ss_pred C
Confidence 4
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=16 Score=35.03 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=91.0
Q ss_pred cEEeecCcccccCCh-------h----HHHHHHHHHHhCCc-------eecCCcHHHHHHHhCCchHHHHHHHHHHc-C-
Q 025344 55 DGLKFSGGSHSLMPK-------P----FIEEVVKRAHQHDV-------YVSTGDWAEHLIRNGPSAFKEYVEDCKQV-G- 114 (254)
Q Consensus 55 D~lKfg~GT~~l~~~-------~----~l~eKi~l~~~~gV-------~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l-G- 114 (254)
+.+-+...||-++-+ + .+.+-++++++++. .|..| +|-|-.-+++-+.++.+.+.+. |
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~--~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYS--PETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEe--eecCCCCCHHHHHHHHHHHHHHhCC
Confidence 446666666654322 1 23455668888843 22222 2333333334455555655344 4
Q ss_pred ----CCEEEecCCcccCChhHHHHHHHHHHHcCCc--ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 115 ----FDTIELNVGSLEIPEETLLRYVRLVKSAGLK--AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 115 ----F~~IEISdGti~i~~~~r~~lI~~~~~~G~~--v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
-+.|-++|-.-.+.+.+-.++|+.++++ +. ...++ +.|+-.|....+
T Consensus 203 ~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~-~~~~~~v~i--------------------------~~H~HnD~GlA~ 255 (333)
T PRK14847 203 TPQRKMIINLPATVESSTANVYADQIEWMHRS-LARRDCIVL--------------------------SVHPHNDRGTAV 255 (333)
T ss_pred CccCCcEEEeCCccccCCHHHHHHHHHHHHHh-cCCCCCcEE--------------------------EEEeCCCCchHH
Confidence 6668888888888888888888888763 10 01122 234444566778
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCCC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
......++|||+.| ++- |+=+..||...+.+-..+...+.+
T Consensus 256 ANslaA~~aGa~~i--~~tv~G~GERaGNa~lE~v~~~L~~~g~~ 298 (333)
T PRK14847 256 AAAELAVLAGAERI--EGCLFGNGERTGNVDLVALALNLERQGIA 298 (333)
T ss_pred HHHHHHHHhCCCEE--EeeCCcCCccccchhHHHHHHHHHhcCCC
Confidence 88999999999995 554 887789999998887777666643
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=13 Score=36.06 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccC-CCceEEecCCc
Q 025344 187 LIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTMFEATNP 240 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~-~~klifEAP~k 240 (254)
....++..+.+||+-+|||-- -++|..-.+..+.++++++.+- +.+.+=..|+|
T Consensus 288 ~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~~~~~ 347 (352)
T PRK13396 288 VPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGRWPQP 347 (352)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 357889999999999999983 7789999999999999997765 55555556655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 254 | ||||
| 1qwg_A | 251 | Crystal Structure Of Methanococcus Jannaschii Phosp | 8e-06 |
| >pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii Phosphosulfolactate Synthase Length = 251 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Length = 251 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 3e-65
Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 34/246 (13%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
+ + + G+T + +ED + G ++D +KF G+ +++ + ++E
Sbjct: 5 EFLYEDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK 60
Query: 76 VKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ + V G E+ G F E++ +C+++GF+ +E++ GS +I E
Sbjct: 61 INYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNN 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
++ K G + D D I+
Sbjct: 119 AIKRAKDNGFMVLTEVGKKMPDKDKQLTIDD---------------------RIKLINFD 157
Query: 195 LEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIR 248
L+AGAD ++I+ + + ++ + + + + + K +FEA FI
Sbjct: 158 LDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFIL 217
Query: 249 RYGPKV 254
++G V
Sbjct: 218 KFGSSV 223
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Length = 276 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-55
Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 37/246 (15%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 32 VRTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 85
Query: 76 VKRAHQHDVYVSTGDW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ +HD+ G E + E+ C G + IE++ G+L + +
Sbjct: 86 ISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAA 143
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ L G+ A + +
Sbjct: 144 YIADFSDEFLVLS------------------EVGSKDAELASRQ----SSEEWLEYIVED 181
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRTSEWFIR 248
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA N + FI+
Sbjct: 182 MEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 241
Query: 249 RYGPKV 254
+ GP V
Sbjct: 242 KIGPNV 247
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Length = 290 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 181 VEDVDLLIRRAERCLEAGADMIMIDS 206
+RR + EAGAD I+I S
Sbjct: 162 GLGQQEAVRRGQAYEEAGADAILIHS 187
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Length = 295 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 181 VEDVDLLIRRAERCLEAGADMIMIDS 206
+D ++RAE AGAD I++ S
Sbjct: 166 GWGLDEALKRAEAYRNAGADAILMHS 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 100.0 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 100.0 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 96.36 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 96.27 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 96.25 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 95.98 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 95.84 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.79 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 95.7 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 95.46 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 95.43 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 95.4 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.31 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 95.26 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 95.19 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 95.13 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.91 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 94.86 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 94.71 | |
| 3ktc_A | 333 | Xylose isomerase; putative sugar isomerase, struct | 94.68 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 94.5 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 94.42 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 94.38 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 94.37 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 94.36 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.34 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 94.3 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.24 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 94.11 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 94.09 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 94.06 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 94.02 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 93.87 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 93.84 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 93.79 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 93.74 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 93.67 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 93.63 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 93.63 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 93.53 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.52 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 93.26 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 93.26 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 93.25 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 93.19 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 93.07 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 93.0 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 92.77 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 92.71 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 92.7 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 92.45 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 92.44 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 92.42 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.4 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 92.32 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 92.26 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 92.25 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 92.11 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 92.01 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 91.94 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.93 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 91.9 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 91.79 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 91.76 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 91.53 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 91.37 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 91.29 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 91.26 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 91.2 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 91.19 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 91.14 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 91.14 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.13 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 91.12 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 91.01 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 90.95 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 90.89 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 90.8 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 90.65 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.6 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 90.55 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 90.52 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 90.43 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 90.25 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.12 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 90.09 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 90.02 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 89.93 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 89.93 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.78 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 89.77 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.72 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.67 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 89.65 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.59 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.53 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 89.52 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 89.32 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 89.25 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 89.19 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 89.15 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 88.93 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 88.79 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.77 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.76 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 88.73 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 88.61 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 88.58 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 88.57 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 88.53 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 88.5 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 88.5 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 88.47 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 88.38 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 88.32 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 88.23 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 88.2 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.16 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.11 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 88.07 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.06 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 88.0 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.99 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 87.96 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 87.96 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 87.96 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 87.93 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 87.86 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 87.57 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 87.54 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 87.46 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 87.45 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 87.38 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 87.36 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 87.29 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 87.04 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.92 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 86.89 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 86.84 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 86.68 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 86.68 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 86.67 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 86.65 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 86.57 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 86.53 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 86.45 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 86.35 | |
| 3qxb_A | 316 | Putative xylose isomerase; structural genomics, jo | 86.25 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 86.18 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 86.17 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 86.16 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 85.95 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 85.94 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 85.87 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 85.84 | |
| 2j6v_A | 301 | UV endonuclease, UVDE; plasmid, TIM barrel, DNA re | 85.73 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 85.62 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 85.55 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 85.48 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 85.27 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 85.24 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 85.19 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 85.17 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 85.06 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 85.05 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 85.02 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 84.72 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 84.45 | |
| 1xim_A | 393 | D-xylose isomerase; isomerase(intramolecular oxido | 84.22 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 84.13 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 84.03 | |
| 3m6y_A | 275 | 4-hydroxy-2-oxoglutarate aldolase; structural geno | 83.75 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 83.42 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 83.37 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 83.34 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 83.21 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 82.97 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 82.88 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 82.81 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 82.75 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 82.74 | |
| 3m0z_A | 249 | Putative aldolase; MCSG, PSI-2, structural genomic | 82.7 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 82.58 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 82.52 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 82.4 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 81.98 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 81.88 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 81.68 | |
| 2vtf_A | 626 | Endo-beta-N-acetylglucosaminidase; hydrolase, fami | 81.67 | |
| 1xla_A | 394 | D-xylose isomerase; isomerase(intramolecular oxido | 81.66 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 81.58 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 81.48 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 81.46 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 81.25 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 80.77 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 80.52 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 80.42 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 80.27 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 80.07 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 80.06 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 80.05 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 80.05 |
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-83 Score=573.35 Aligned_cols=209 Identities=21% Similarity=0.383 Sum_probs=200.6
Q ss_pred CCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHH
Q 025344 19 EKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIR 97 (254)
Q Consensus 19 ~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~ 97 (254)
+|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| ||||+|++
T Consensus 8 ~KPR~~GlT~v~dkgl----g~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~ 83 (251)
T 1qwg_A 8 YEDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYS 83 (251)
T ss_dssp CCCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CCCcccCeeEEecCCC----CHHHHHHHHHHhhhhcceEEecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHH
Confidence 9999999999999997 889999999999999999999999999999999999999999999999997 59999999
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
|| ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||+|+|++. .+
T Consensus 84 qg--~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~------~~------------- 142 (251)
T 1qwg_A 84 KG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPD------KD------------- 142 (251)
T ss_dssp TT--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHH------HH-------------
T ss_pred cC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCc------cc-------------
Confidence 99 9999999999999999999999999999999999999999999999999998762 11
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~I~~~G 251 (254)
.+.|+++||+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||++||
T Consensus 143 --~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~~fG 220 (251)
T 1qwg_A 143 --KQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFG 220 (251)
T ss_dssp --TTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHHCCCcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECCChHHHHHHHHHhC
Confidence 1236999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCC
Q 025344 252 PKV 254 (254)
Q Consensus 252 p~V 254 (254)
|||
T Consensus 221 ~~V 223 (251)
T 1qwg_A 221 SSV 223 (251)
T ss_dssp TTC
T ss_pred CCc
Confidence 998
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-82 Score=572.16 Aligned_cols=217 Identities=20% Similarity=0.380 Sum_probs=189.2
Q ss_pred cccCC-CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee
Q 025344 8 WKSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (254)
Q Consensus 8 ~~~f~-~l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v 86 (254)
++.|. ++|.|++|||.+|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+ |++||++||+|||+|
T Consensus 23 m~~~~f~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~DlLe~ag~yID~lKfg~GTs~l~~~--l~ekI~l~~~~gV~v 96 (276)
T 1u83_A 23 MNDFSLELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITF 96 (276)
T ss_dssp --CCCCCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCTT--HHHHHHHHHHTTCEE
T ss_pred cccccCCCCCcCCCCcccCceEEecCCC----CHHHHHHHHHHhhhhcceEEecCcchhhhHH--HHHHHHHHHHcCCeE
Confidence 34555 3699999999999999999997 8899999999999999999999999999999 999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 025344 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (254)
Q Consensus 87 ~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~ 165 (254)
||| ||||+|++|| ++++|+++||++||++|||||||++||+++|+++|+++++. |+|+||+|+|++.. +
T Consensus 97 ~~GGTlfE~~l~qg--~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~-f~Vl~EvG~K~~~~------~- 166 (276)
T 1u83_A 97 FFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDE-FLVLSEVGSKDAEL------A- 166 (276)
T ss_dssp EECHHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTT-SEEEEECSCCC-----------
T ss_pred eCCcHHHHHHHHcC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhh-cEEeeeccccCccc------c-
Confidence 997 5999999999 99999999999999999999999999999999999999999 99999999997621 1
Q ss_pred ccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHH-HHHHhccCCCceEEecCC
Q 025344 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADII-AKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i-~~ii~~l~~~klifEAP~ 239 (254)
.+.++++||+++++||+|||++|||||| |||+++|+||+|++ ++|++++|++|||||||+
T Consensus 167 --------------~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~~g~~r~d~v~~~i~~~l~~eklifEAp~ 232 (276)
T 1u83_A 167 --------------SRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPN 232 (276)
T ss_dssp ----------------CCSTHHHHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSCGGGEEEECCS
T ss_pred --------------CCCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCccCCCCCCcHHHHHHHHHhhCChhhEEEECCC
Confidence 1225788899999999999999999996 89999999999999 999999999999999999
Q ss_pred chhHHHHHHHhCCCC
Q 025344 240 PRTSEWFIRRYGPKV 254 (254)
Q Consensus 240 k~qQ~~~I~~~Gp~V 254 (254)
|+||+|||++|||||
T Consensus 233 k~qq~~fI~~fGp~V 247 (276)
T 1u83_A 233 KTLQQGFIQKIGPNV 247 (276)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999998
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.021 Score=51.03 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=102.2
Q ss_pred hHHHHHHHhhcccccEEeecCccc--------ccCCh---hHHHHHHHHHHhCCceec--CCc-H-HHHHHHhCCchHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSH--------SLMPK---PFIEEVVKRAHQHDVYVS--TGD-W-AEHLIRNGPSAFKE 105 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~--------~l~~~---~~l~eKi~l~~~~gV~v~--~Gt-l-~E~a~~qg~~~~~~ 105 (254)
..++..+++ -+|.+-+...+| -...+ +.+++-++.+|++|+.|. .++ + .|.....+++.+.+
T Consensus 83 ~~i~~a~~~---G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~ 159 (295)
T 1ydn_A 83 KGYEAAAAA---HADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVAS 159 (295)
T ss_dssp HHHHHHHHT---TCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHH
T ss_pred HHHHHHHHC---CCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHH
Confidence 445555554 456666655555 22222 234666999999999875 121 1 13323344556677
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
+++.+.++|.+.|=|.|-.--+.+++-.++|+.+++. +. ...++.-. +.+ ..
T Consensus 160 ~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~-~~-~~~l~~H~-Hn~-------------------------~G 211 (295)
T 1ydn_A 160 VTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAI-AP-AHSLAGHY-HDT-------------------------GG 211 (295)
T ss_dssp HHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTT-SC-GGGEEEEE-BCT-------------------------TS
T ss_pred HHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-CCC-------------------------cc
Confidence 7777779999999999866678888888999999884 21 01233321 111 11
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccc------cCCCccHHHHHHHHhccCCC
Q 025344 186 LLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
.-+..+...++|||++|=+=-.|+-. ..||+.++.+-..+...|.+
T Consensus 212 la~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~ 263 (295)
T 1ydn_A 212 RALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFE 263 (295)
T ss_dssp CHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCCC
Confidence 22667788899999977653347766 68999988887777766643
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.056 Score=45.11 Aligned_cols=143 Identities=15% Similarity=0.049 Sum_probs=85.9
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+...-++++..++++|++|.|+=.+.-... +-|+..|++ +++++-..-+ .. -.+.+++.|.+.|.+
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G~p~~~~~g~----~~i~~ir~~~~~~~i~~~~~~-----~~--~~~~~~~~~~~~Gad 79 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVGTPFLIREGV----NAIKAIKEKYPHKEVLADAKI-----MD--GGHFESQLLFDAGAD 79 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHTT----HHHHHHHHHCTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHhhcCccEEEeCcHHHHhccH----HHHHHHHHhCCCCEEEEEEEe-----cc--chHHHHHHHHhcCCC
Confidence 4566777777777899999999621111112 234444443 6666443211 11 234458999999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL 195 (254)
.|=+.+-. +.+...++++.+++.|+++..++ +. | ++ .++++..+
T Consensus 80 ~v~v~~~~---~~~~~~~~~~~~~~~g~~~~v~~~~~-----------------------~------t~---~~~~~~~~ 124 (211)
T 3f4w_A 80 YVTVLGVT---DVLTIQSCIRAAKEAGKQVVVDMICV-----------------------D------DL---PARVRLLE 124 (211)
T ss_dssp EEEEETTS---CHHHHHHHHHHHHHHTCEEEEECTTC-----------------------S------SH---HHHHHHHH
T ss_pred EEEEeCCC---ChhHHHHHHHHHHHcCCeEEEEecCC-----------------------C------CH---HHHHHHHH
Confidence 99996543 34566789999999988766431 11 0 12 56677888
Q ss_pred HcCCcEEEEeccccccc-CCCccHHHHHHHHhcc
Q 025344 196 EAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRL 228 (254)
Q Consensus 196 eAGA~~ViiEargi~d~-~g~~r~d~i~~ii~~l 228 (254)
++|+++|.+.. |.... .+....+.+.++.+.+
T Consensus 125 ~~g~d~i~v~~-g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 125 EAGADMLAVHT-GTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp HHTCCEEEEEC-CHHHHHTTCCSHHHHHHHHHHC
T ss_pred HcCCCEEEEcC-CCcccccCCCCHHHHHHHHHHc
Confidence 99999998862 21100 1111345666665544
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.084 Score=44.89 Aligned_cols=78 Identities=6% Similarity=0.103 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
.+++.++.++++||+.||+....+ .++.++..++.+.++++|+++.+ ++.-..
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~------------------------ 85 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYA-VGPIYM------------------------ 85 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEE-EEEEEE------------------------
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEE-Eecccc------------------------
Confidence 689999999999999999998743 56678888999999999998754 332100
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+.+.+.+.++..-+.||.+|.+..
T Consensus 86 --~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 86 --KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp --CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 1366777778888889999999864
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.11 Score=44.14 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+++.++.++++||++||+.... ..++.++..++-+.++++|+++.+ ++.-.. .
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-------~------ 88 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVG-TGVYVA-------E------ 88 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEE-EEEECC-------S------
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEE-EeccCC-------c------
Confidence 68999999999999999998652 356788888999999999998654 222100 0
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+.+.+.++.+-+.||..|++..
T Consensus 89 -------------~~~~~~~~i~~A~~lGa~~v~~~~ 112 (262)
T 3p6l_A 89 -------------KSSDWEKMFKFAKAMDLEFITCEP 112 (262)
T ss_dssp -------------STTHHHHHHHHHHHTTCSEEEECC
T ss_pred -------------cHHHHHHHHHHHHHcCCCEEEecC
Confidence 133455666666778999999975
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.13 Score=48.50 Aligned_cols=123 Identities=17% Similarity=0.289 Sum_probs=87.4
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 125 (254)
|+.+-||+||..+.+.+.|.+.++.++++ ++. .+ .|+.+.-+|+.+ ++.++.++++|++.|+|+--|.
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~--~~--~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~ 180 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFN--AD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR 180 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEE--EE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHH
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCC--CC--cEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 78899999999999988999999999873 110 00 011111123332 5788999999999999974443
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
.-+.++-.+.|+.+++.||. +...+=. +. + -++.+++.+.++..++.|.+
T Consensus 181 ~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~--Gl--P---------------------get~e~~~~tl~~~~~l~~~ 235 (457)
T 1olt_A 181 LVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL--P---------------------KQTPESFAFTLKRVAELNPD 235 (457)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC--T---------------------TCCHHHHHHHHHHHHHHCCS
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc--CC--C---------------------CCCHHHHHHHHHHHHhcCcC
Confidence 23567888999999999997 6554432 11 0 01478889999999999999
Q ss_pred EEEEe
Q 025344 201 MIMID 205 (254)
Q Consensus 201 ~ViiE 205 (254)
.|-+=
T Consensus 236 ~i~~y 240 (457)
T 1olt_A 236 RLSVF 240 (457)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88764
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.056 Score=48.64 Aligned_cols=158 Identities=14% Similarity=0.096 Sum_probs=102.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
..++..+++ =+|.+-+..++|-++.+ +.+++-++.+|++|+.|. .|.-++ -.-+++.+
T Consensus 87 ~~i~~a~~a---G~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~--~~~~~~~~ 161 (302)
T 2ftp_A 87 KGFEAALES---GVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD--GDVDPRQV 161 (302)
T ss_dssp HHHHHHHHT---TCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT--BCCCHHHH
T ss_pred HHHHHHHhC---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC--CCCCHHHH
Confidence 444555553 46777776667654322 235888999999999883 232111 12233455
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++++.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +. ...++.- .+. |
T Consensus 162 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~l~~H-~Hn-------------------------~ 213 (302)
T 2ftp_A 162 AWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASE-VP-RERLAGH-FHD-------------------------T 213 (302)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTT-SC-GGGEEEE-EBC-------------------------T
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEE-eCC-------------------------C
Confidence 566666669999999999866667888888999999874 21 1123331 111 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccc------cCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+...++|||++|=+=-.|+=. ..||..++.+-..+...|.+
T Consensus 214 ~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~ 267 (302)
T 2ftp_A 214 YGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIH 267 (302)
T ss_dssp TSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCB
T ss_pred ccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 2233778889999999876333347766 78999998887787766643
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.31 Score=41.10 Aligned_cols=129 Identities=12% Similarity=0.143 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--c-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL--E-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++.++.++++||+.||+..... . .+..+..++-+.+++.|+++.+ ++.-.+... .|++
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~-~~~~~~~~~----~~~~------------ 82 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFNQ----LTEE------------ 82 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTTS----CCHH------------
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEe-chhhhccCC----cHHH------------
Confidence 688899999999999999985432 1 2446677788888999998754 222111110 0110
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCcc---HHHHHH---HHhccCCCceEEecC--------CchhHH
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAK---VIGRLGLEKTMFEAT--------NPRTSE 244 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r---~d~i~~---ii~~l~~~klifEAP--------~k~qQ~ 244 (254)
..+.+.+.++..-+.||..|.+-+- .... ..++ .+.+.+ +++..|+ +|.+|.- ...+-.
T Consensus 83 ----~~~~~~~~i~~a~~lG~~~v~~~~g-~~~~-~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~~~~~~~~~~~ 155 (272)
T 2q02_A 83 ----VVKKTEGLLRDAQGVGARALVLCPL-NDGT-IVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQ 155 (272)
T ss_dssp ----HHHHHHHHHHHHHHHTCSEEEECCC-CSSB-CCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEccC-CCch-hHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCCCcccccCHHHHH
Confidence 1345566666666789999988432 1111 1111 223333 3344554 4777753 234455
Q ss_pred HHHHHhCCCC
Q 025344 245 WFIRRYGPKV 254 (254)
Q Consensus 245 ~~I~~~Gp~V 254 (254)
.++++.+|+|
T Consensus 156 ~l~~~v~~~~ 165 (272)
T 2q02_A 156 QLIREAGSPF 165 (272)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhCcCe
Confidence 7888877654
|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.099 Score=44.62 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++.++.++++||+.||+......-+. +..++-+.++++|+++..-..... .+. +.
T Consensus 24 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~-~~~-----~~---------------- 80 (264)
T 1yx1_A 24 GQASFLPLLAMAGAQRVELREELFAGPP-DTEALTAAIQLQGLECVFSSPLEL-WRE-----DG---------------- 80 (264)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGGCSSCC-CHHHHHHHHHHTTCEEEEEEEEEE-ECT-----TS----------------
T ss_pred CHHHHHHHHHHcCCCEEEEEHHhcCCCH-HHHHHHHHHHHcCCEEEEecchhh-cCC-----ch----------------
Confidence 5788999999999999999754332223 667888889999998753211110 000 00
Q ss_pred cCH-HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc------hhHHHHHHHh
Q 025344 182 EDV-DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP------RTSEWFIRRY 250 (254)
Q Consensus 182 ~d~-~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k------~qQ~~~I~~~ 250 (254)
+. +.+.+.++..-+.||..|.+-.- -+.... .-..+.++++..|+ +|.+|.-.. .+-..++...
T Consensus 81 -~~~~~~~~~i~~A~~lGa~~v~~~~g-~~~~~~--~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~~~~~~ll~~v 151 (264)
T 1yx1_A 81 -QLNPELEPTLRRAEACGAGWLKVSLG-LLPEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLERFFRLA 151 (264)
T ss_dssp -SBCTTHHHHHHHHHHTTCSEEEEEEE-CCCSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHcCCCEEEEecC-CCCcHH--HHHHHHHHHHhcCC-EEEEecCCCCCCCCHHHHHHHHHHH
Confidence 12 33455666666789999998753 222222 34456666666666 677885432 3444555555
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.16 Score=45.45 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=106.2
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecC------CcHHHHHHHhCCch
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVST------GDWAEHLIRNGPSA 102 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~------Gtl~E~a~~qg~~~ 102 (254)
...++..+++ -+|.+-+...+|-.+.. +.+++-++.++++|+.|.. |- |.+-..+++.
T Consensus 83 ~~~i~~a~~a---g~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~--~~~~~~~~~~ 157 (298)
T 2cw6_A 83 LKGFEAAVAA---GAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGC--PYEGKISPAK 157 (298)
T ss_dssp HHHHHHHHHT---TCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCB--TTTBSCCHHH
T ss_pred HHhHHHHHHC---CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC--CcCCCCCHHH
Confidence 3455555555 46677776666644322 2467789999999998842 21 2111223446
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. ...+++-+ +.+
T Consensus 158 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~i~~H~-Hn~------------------------ 210 (298)
T 2cw6_A 158 VAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQE-VP-LAALAVHC-HDT------------------------ 210 (298)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHH-SC-GGGEEEEE-BCT------------------------
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-CCC------------------------
Confidence 7778888899999999999988889999999999999985 21 11234311 111
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccc------cCCCccHHHHHHHHhccCCC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+...++|||+.|=.=-.|+=. ..||+.++.+-..+...|.+
T Consensus 211 -~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~~ 264 (298)
T 2cw6_A 211 -YGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIH 264 (298)
T ss_dssp -TSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTCB
T ss_pred -CchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCCC
Confidence 2223666778899999976542236655 69999999888888766643
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.083 Score=48.45 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=106.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYV 107 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl 107 (254)
+.++..+++- +|.+-+-..+|-.+.. +.+++-++.++++|+.|... .|+. +-...++.+-+..
T Consensus 100 ~~i~~a~~~g---~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~ 175 (337)
T 3ble_A 100 KTVDWIKDSG---AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSN-GFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHHHT---CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH-HHHHCHHHHHHHH
T ss_pred hhHHHHHHCC---CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CCcCCHHHHHHHH
Confidence 4555555544 4556555545443211 45788899999999987754 3322 3344455777888
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. + +...++.-+ + .|...-
T Consensus 176 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~-p~~~i~~H~-H-------------------------nd~GlA 227 (337)
T 3ble_A 176 EHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQK-Y-PDIHFEFHG-H-------------------------NDYDLS 227 (337)
T ss_dssp HHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHH-C-TTSCEEEEC-B-------------------------CTTSCH
T ss_pred HHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHh-c-CCCeEEEEe-c-------------------------CCcchH
Confidence 88899999999999988888999999999999884 2 012233311 1 123334
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..+...++|||+.|=.=-.|+=...||..++.+-..+...
T Consensus 228 ~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 228 VANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHDK 268 (337)
T ss_dssp HHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHh
Confidence 77888889999996633334888899999988877666544
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.016 Score=53.60 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhC-------CceecCCcHHHHH-HHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHH
Q 025344 70 PFIEEVVKRAHQH-------DVYVSTGDWAEHL-IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRY 135 (254)
Q Consensus 70 ~~l~eKi~l~~~~-------gV~v~~Gtl~E~a-~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----i--~~~~r~~l 135 (254)
..+.|.|+-.++. +|++++..|.+-- +... ...++.+.+.+.|+++|+||+|+.. + ++.....+
T Consensus 209 r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~--~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~ 286 (363)
T 3l5l_A 209 RFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLE--ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPI 286 (363)
T ss_dssp HHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHH--HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHH--HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHH
Confidence 3567777777764 2355554332211 2222 4566778888999999999998642 1 23234566
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCC
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHAD 214 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g 214 (254)
++.+++. +++ +.--+| .+. | .+.+++.|++| ||.|++ +|.+..
T Consensus 287 ~~~ir~~-------~~i--PVi~~G--------gI~-----------s----~e~a~~~l~~G~aD~V~i-GR~~la--- 330 (363)
T 3l5l_A 287 AERVRRE-------AKL--PVTSAW--------GFG-----------T----PQLAEAALQANQLDLVSV-GRAHLA--- 330 (363)
T ss_dssp HHHHHHH-------HTC--CEEECS--------STT-----------S----HHHHHHHHHTTSCSEEEC-CHHHHH---
T ss_pred HHHHHHH-------cCC--cEEEeC--------CCC-----------C----HHHHHHHHHCCCccEEEe-cHHHHh---
Confidence 6666662 221 110011 111 2 56778889999 999988 565543
Q ss_pred CccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 025344 215 SLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251 (254)
Q Consensus 215 ~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~I~~~G 251 (254)
+++++.++.+.++.+.. +...+.|..|++.+|+
T Consensus 331 --nPdl~~k~~~~lg~~~~--~~~~~~~~~~~~~~~~ 363 (363)
T 3l5l_A 331 --DPHWAYFAAKELGVEKA--SWTLPAPYAHWLERYR 363 (363)
T ss_dssp --CTTHHHHHHHHTTCTTG--GGGSCHHHHHHHC---
T ss_pred --CchHHHHHHHHcCCCcc--cCCCCchhHhHhhccC
Confidence 26789999999885321 2355678888877764
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.31 Score=43.53 Aligned_cols=129 Identities=18% Similarity=0.281 Sum_probs=88.7
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCc----eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV----~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
....+..+++.+.+ -+..+.|.+|--.+.+. +.+.++.+++.+. .+.+ |+++ +++++.+++
T Consensus 51 s~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~--l~~li~~~~~~~~~~~i~i~TNG~ll-----------~~~~~~L~~ 117 (340)
T 1tv8_A 51 TFDEMARIAKVYAELGVKKIRITGGEPLMRRD--LDVLIAKLNQIDGIEDIGLTTNGLLL-----------KKHGQKLYD 117 (340)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEESSCGGGSTT--HHHHHHHHTTCTTCCEEEEEECSTTH-----------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccchhh--HHHHHHHHHhCCCCCeEEEEeCccch-----------HHHHHHHHH
Confidence 55677777765544 37889999999888875 7899999998853 3445 6543 346677788
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|++.|.||=-+.+ .+.+.-.+.|+.+++.|+.|...+-+-.+ .
T Consensus 118 ~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv~~g---~---------------------- 172 (340)
T 1tv8_A 118 AGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG---I---------------------- 172 (340)
T ss_dssp HTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEECTT---T----------------------
T ss_pred CCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCC---C----------------------
Confidence 99999999977652 15677788999999999866555444100 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+++.+.++...+.|++..++|-
T Consensus 173 -n~~ei~~~~~~~~~~g~~~~~i~~ 196 (340)
T 1tv8_A 173 -NDDQIIPMLEYFKDKHIEIRFIEF 196 (340)
T ss_dssp -TGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred -CHHHHHHHHHHHHhcCCeEEEEEe
Confidence 122334445555678998777775
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.32 Score=47.82 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
.+.+++.+.+.|.+.|-|.+.+=++ +.-...|+.+++.|..|-.-+.-. . ++ .-
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s~sd~--~ni~~~i~~ak~~G~~v~~~i~~~-----~----~~---------------~~ 172 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICYT-----I----SP---------------VH 172 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECC-----C----ST---------------TC
T ss_pred cHHHHHHHHhCCCCEEEEEEehhHH--HHHHHHHHHHHHCCCeEEEEEEee-----e----CC---------------CC
Confidence 7889999999999999999888777 455689999999998753323221 1 11 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I-----~L~DT~G~~~P~~v~~lv~~l 213 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIKAI 213 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EeCCCCCCcCHHHHHHHHHHH
Confidence 58999999999999999855 478888988888887777543
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.24 Score=45.49 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++++++.+.+.|.+.|.++-|.- . .++++.+++.|+++...+ .
T Consensus 110 ~~~~~~~~~~~~g~~~V~~~~g~~---~---~~~i~~~~~~g~~v~~~v----~-------------------------- 153 (369)
T 3bw2_A 110 GYDAKLAVLLDDPVPVVSFHFGVP---D---REVIARLRRAGTLTLVTA----T-------------------------- 153 (369)
T ss_dssp THHHHHHHHHHSCCSEEEEESSCC---C---HHHHHHHHHTTCEEEEEE----S--------------------------
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCC---c---HHHHHHHHHCCCeEEEEC----C--------------------------
Confidence 589999999999999999987753 1 356777777776543211 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+ ++.++...++|||+|++++.
T Consensus 154 -t----~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 154 -T----PEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp -S----HHHHHHHHHTTCSEEEEECT
T ss_pred -C----HHHHHHHHHcCCCEEEEeCC
Confidence 1 34567778999999999885
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.22 Score=44.50 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=77.3
Q ss_pred hHHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
-++.| +++++..|-|+|=+-+. .++.++..++++.+++.|+.++.|+.-
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a--~l~~~~l~~l~~~a~~lGl~~lvev~t---------------------------- 171 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVA--ALEQSVLVSMLDRTESLGMTALVEVHT---------------------------- 171 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCEEEEEESS----------------------------
T ss_pred ccCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHCCCcEEEEcCC----------------------------
Confidence 57788 99999999999998544 456777889999999999988765521
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC-ceEEecCCc-hhHHHHHHHhCCC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~-klifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
.+++++.+++||++|-+-.|..-. -.+..+.+.++...++.+ -++-|.=-. ..+..-+...|.+
T Consensus 172 -------~ee~~~A~~~Gad~IGv~~r~l~~--~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gad 237 (272)
T 3qja_A 172 -------EQEADRALKAGAKVIGVNARDLMT--LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGAD 237 (272)
T ss_dssp -------HHHHHHHHHHTCSEEEEESBCTTT--CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCS
T ss_pred -------HHHHHHHHHCCCCEEEECCCcccc--cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCC
Confidence 234455668899999998773311 123345567777777633 355565444 5566666666653
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.24 Score=47.70 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
++.+++.+.+.|.+.|-|.+.+-++ +.-...|+.+++.|..|..-+.--+ ++ .-
T Consensus 102 ~~~~v~~a~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~G~~v~~~i~~~~---------~~---------------~~ 155 (464)
T 2nx9_A 102 VDTFVERAVKNGMDVFRVFDAMNDV--RNMQQALQAVKKMGAHAQGTLCYTT---------SP---------------VH 155 (464)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECCC---------CT---------------TC
T ss_pred hHHHHHHHHhCCcCEEEEEEecCHH--HHHHHHHHHHHHCCCEEEEEEEeee---------CC---------------CC
Confidence 6889999999999999999887776 4456899999999988744332211 01 01
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I-----~l~DT~G~~~P~~v~~lv~~l 196 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSI-----ALKDMAGILTPYAAEELVSTL 196 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEE-----EEcCCCCCcCHHHHHHHHHHH
Confidence 58999999999999999866 478889999988888887654
|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.28 Score=42.25 Aligned_cols=134 Identities=15% Similarity=0.259 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k-~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+++.++.++++||+.||++.... .++.++..++.+.++++|+++.+ ++.- +..-.+++ .|+.
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~d~~------- 101 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS-MCLSAHRRFPLGS-EDDA------- 101 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE-EEEGGGGTSCTTC-SSHH-------
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE-EecCcccCCCCCC-CCHH-------
Confidence 799999999999999999986542 45777888899999999999754 2210 00001111 1110
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHH-------HHH---HHhccCCCceEEecC-----
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IAK---VIGRLGLEKTMFEAT----- 238 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~-------i~~---ii~~l~~~klifEAP----- 238 (254)
......+.+.+.++..-+.||..|++-+-..+. +.-+.+. +.+ +++..|+ +|.+|.-
T Consensus 102 -----~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~~~~~ 173 (295)
T 3cqj_A 102 -----VRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYY--QEANNETRRRFRDGLKESVEMASRAQV-TLAMEIMDYPLM 173 (295)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSS--SCCCHHHHHHHHHHHHHHHHHHHHHTC-EEEEECCSSGGG
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCc--CcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEeeCCCccc
Confidence 001124566667777778899999986432211 1112222 222 2233343 4777853
Q ss_pred -CchhHHHHHHHhCC
Q 025344 239 -NPRTSEWFIRRYGP 252 (254)
Q Consensus 239 -~k~qQ~~~I~~~Gp 252 (254)
...+-..++++.|+
T Consensus 174 ~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 174 NSISKALGYAHYLNN 188 (295)
T ss_dssp CSHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhcCC
Confidence 34556677887773
|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.65 Score=41.17 Aligned_cols=70 Identities=20% Similarity=0.131 Sum_probs=49.2
Q ss_pred EEeecCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHH
Q 025344 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETL 132 (254)
Q Consensus 56 ~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~i~~~~r 132 (254)
.-|||.|++.+-.+ +..++ |.| .+..+.+.++.++++ ||+.||+.-.. .. .++.
T Consensus 7 ~~~~~~~~w~~~~~--------------~~~f~~~g~~-------~~~~~~e~l~~aa~~~G~~~VEl~~~~-~~-~~~~ 63 (333)
T 3ktc_A 7 YPEFGAGLWHFANY--------------IDRYAVDGYG-------PALSTIDQINAAKEVGELSYVDLPYPF-TP-GVTL 63 (333)
T ss_dssp CCCEEEEGGGGSCC--------------CCSSSTTCSS-------CCCCHHHHHHHHHHHSSEEEEEEEESC-ST-TCCH
T ss_pred CCcceeeeeeeecc--------------cccccCCCCC-------CCCCHHHHHHHHHHhCCCCEEEecCCC-cc-hhHH
Confidence 45899999888764 22333 322 134799999999999 99999996211 11 3567
Q ss_pred HHHHHHHHHcCCcccc
Q 025344 133 LRYVRLVKSAGLKAKP 148 (254)
Q Consensus 133 ~~lI~~~~~~G~~v~~ 148 (254)
.++-+.+++.|+++..
T Consensus 64 ~~l~~~l~~~Gl~i~~ 79 (333)
T 3ktc_A 64 SEVKDALKDAGLKAIG 79 (333)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCeEEE
Confidence 7888889999999753
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.24 Score=44.41 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.+.++.+.+.|++.|-|.+++-+ ++.++ -.+.|+.+++.|..|-.+++.-++. + .+
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~-e----~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGC-P----YD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCB-T----TT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC-C----cC-------
Confidence 46788888899999999887744 34333 3577899999999988777764321 1 11
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..|++.+++.++...++||+.|-+ .|..|-..+..+.++++.+
T Consensus 154 --------~~~~~~~~~~~~~~~~~~G~d~i~l-----~DT~G~~~P~~~~~lv~~l 197 (302)
T 2ftp_A 154 --------GDVDPRQVAWVARELQQMGCYEVSL-----GDTIGVGTAGATRRLIEAV 197 (302)
T ss_dssp --------BCCCHHHHHHHHHHHHHTTCSEEEE-----EESSSCCCHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCEEEE-----eCCCCCcCHHHHHHHHHHH
Confidence 1126999999999999999998754 4677777777777777654
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.088 Score=44.50 Aligned_cols=131 Identities=21% Similarity=0.193 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++.++.++++||+.||+... .++..+..++.+.+++.|+++.+-..-- .+.+ .|+. ...
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~----~~~~-~d~~------------~r~ 79 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRD--QVAAIGLGEAGRIVRANGLKLTGLCRGG----FFPA-PDAS------------GRE 79 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHH--HHHHHCHHHHHHHHHHHTCEESCEEEEE----CCCC-SSHH------------HHH
T ss_pred CHHHHHHHHHHcCCCEEEeccc--cccccCHHHHHHHHHHcCCceEEeecCC----CcCC-CCHH------------HHH
Confidence 7899999999999999999764 2346677888999999999976532211 1111 1211 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCcc-------HHHHHHH---HhccCCCceEEecC------------C
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR-------ADIIAKV---IGRLGLEKTMFEAT------------N 239 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r-------~d~i~~i---i~~l~~~klifEAP------------~ 239 (254)
...+.+.+.++..-+.||..|++-+-..... +.-. .+.+.++ ++..|+ +|.+|.- .
T Consensus 80 ~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~ 157 (275)
T 3qc0_A 80 KAIDDNRRAVDEAAELGADCLVLVAGGLPGG-SKNIDAARRMVVEGIAAVLPHARAAGV-PLAIEPLHPMYAADRACVNT 157 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEECBCCCTT-CCCHHHHHHHHHHHHHHHHHHHHHHTC-CEEECCCCGGGTTTTBSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCCC-CcCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeECCCcccCCccccCC
Confidence 1245555666666678999999976322111 1111 1223333 334455 5888851 3
Q ss_pred chhHHHHHHHhCCC
Q 025344 240 PRTSEWFIRRYGPK 253 (254)
Q Consensus 240 k~qQ~~~I~~~Gp~ 253 (254)
..+-..++++.+++
T Consensus 158 ~~~~~~l~~~~~~~ 171 (275)
T 3qc0_A 158 LGQALDICETLGPG 171 (275)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcc
Confidence 45566788887763
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.15 Score=45.89 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=99.6
Q ss_pred ccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
+|.+-+-..+|-+..+ +.+++-++.++++|..|..+- |.+-.-.++.+-++.+.+.++|.+.|-+.|
T Consensus 94 ~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~D 171 (293)
T 3ewb_X 94 SPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSP--EDATRSDRAFLIEAVQTAIDAGATVINIPD 171 (293)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEE--ETGGGSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEe--ccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5666665555544321 236788899999999776532 223334455677888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.+++. +.- ...++.- +-.|...-+..+...++|||+
T Consensus 172 T~G~~~P~~v~~lv~~l~~~-~~~~~~~~l~~H--------------------------~Hnd~Gla~AN~laA~~aGa~ 224 (293)
T 3ewb_X 172 TVGYTNPTEFGQLFQDLRRE-IKQFDDIIFASH--------------------------CHDDLGMATANALAAIENGAR 224 (293)
T ss_dssp SSSCCCHHHHHHHHHHHHHH-CTTGGGSEEEEE--------------------------CBCTTSCHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHh-cCCccCceEEEE--------------------------eCCCcChHHHHHHHHHHhCCC
Confidence 99999999999999999884 110 0113331 111233447788889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHHh
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
++++- |+=...||..++.+-..+.
T Consensus 225 --~vd~sv~GlGeraGN~~~E~vv~~L~ 250 (293)
T 3ewb_X 225 --RVEGTINGIGERAGNTALEEVAVALH 250 (293)
T ss_dssp --EEEEBGGGCCTTTCBCBHHHHHHHHH
T ss_pred --EEEeeccccccccccHhHHHHHHHHH
Confidence 45775 8888999999887766664
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.21 Score=44.35 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=77.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+.-. .++.++..++++.+++.|+.++.|+.-
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~---------------------------------- 159 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHS---------------------------------- 159 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 45589999999999877 367789999999999999999998864
Q ss_pred HHHHHHHHHHc-CCcEEEEecccccccCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHH
Q 025344 187 LIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFI 247 (254)
Q Consensus 187 ~i~~~~~dLeA-GA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~k-lifEAP~k-~qQ~~~I 247 (254)
.+.+++.+++ |+++|-|+-|++-.- .+.-+...+++..++.+. +|-|+=-. ..+...+
T Consensus 160 -~eE~~~A~~l~g~~iIGinnr~l~t~--~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~ 220 (251)
T 1i4n_A 160 -REDLEKVFSVIRPKIIGINTRDLDTF--EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL 220 (251)
T ss_dssp -HHHHHHHHTTCCCSEEEEECBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH
T ss_pred -HHHHHHHHhcCCCCEEEEeCcccccC--CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHH
Confidence 4557888999 999999999987332 444566777888888654 55576543 3444333
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.54 Score=41.80 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=90.3
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+..+.+.++.+.+ -+..+-|.+|...+++.+.+.+.++.+++.++.+.. .+. .-++.++.+++.|++
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~----------l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGE----------WPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCC----------CCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCC----------CCHHHHHHHHHhCCC
Confidence 34455555544333 277888999996677766799999999999887763 221 236778888999999
Q ss_pred EEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 117 TIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 117 ~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
.+-+|--+. .-+.+++.+.|+.+++.|+.+.+ +.-.+. + + ++.++
T Consensus 155 ~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~G~--p---~------------------et~e~ 209 (348)
T 3iix_A 155 RYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGA--GSMVGL--P---G------------------QTIDD 209 (348)
T ss_dssp EEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEE--CBEESC--T---T------------------CCHHH
T ss_pred EEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeecc--ceEEeC--C---C------------------CCHHH
Confidence 998875544 23778999999999999986443 332221 0 0 13677
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 025344 187 LIRRAERCLEAGADMIMI 204 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~Vii 204 (254)
+.+.+....+.|++.|-+
T Consensus 210 ~~~~~~~l~~l~~~~i~i 227 (348)
T 3iix_A 210 LVDDLLFLKEHDFDMVGI 227 (348)
T ss_dssp HHHHHHHHHHHTCSEECC
T ss_pred HHHHHHHHHhcCCCEEee
Confidence 777777777778887654
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.56 Score=42.18 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=49.5
Q ss_pred hHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhC----------Ccee----cCCcHHHHHHHhCC
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH----------DVYV----STGDWAEHLIRNGP 100 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~----------gV~v----~~Gtl~E~a~~qg~ 100 (254)
..+.+..+.+.++.|++=+-+++-. +...+.+.+.++-.++. ++++ .++ |- .
T Consensus 153 ~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~-~~-----~-- 224 (336)
T 1f76_A 153 DDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPD-LS-----E-- 224 (336)
T ss_dssp HHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSC-CC-----H--
T ss_pred HHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCC-CC-----H--
Confidence 4455555555668898877776533 33345556666666543 4544 333 21 1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
+.+.++.+.+.+.|.|+|.+|+++..
T Consensus 225 ~~~~~~a~~l~~~Gvd~i~vsn~~~~ 250 (336)
T 1f76_A 225 EELIQVADSLVRHNIDGVIATNTTLD 250 (336)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCBCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCccc
Confidence 14677788999999999999998753
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.19 Score=45.50 Aligned_cols=156 Identities=10% Similarity=0.102 Sum_probs=104.6
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
..++..+++- +|.+-+...+|-.+.+ +.+++-++.++++|+.|. .|--++- .-.++.+
T Consensus 85 ~~i~~a~~~g---~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~~~~~ 159 (307)
T 1ydo_A 85 RGLENALEGG---INEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVPIEQV 159 (307)
T ss_dssp HHHHHHHHHT---CSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHHH
T ss_pred HhHHHHHhCC---cCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCCHHHH
Confidence 4555555543 5666666655543211 336788999999999884 2321211 2233466
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++++.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. -..++.- +-.|
T Consensus 160 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H--------------------------~Hnd 211 (307)
T 1ydo_A 160 IRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLAR-FP-ANQIALH--------------------------FHDT 211 (307)
T ss_dssp HHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT-SC-GGGEEEE--------------------------CBGG
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEE--------------------------ECCC
Confidence 777778889999999999988888999989999999884 21 1134441 1112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccc------cCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+...++|||+.| ++- |+=. ..||..++.+-..+...|.+
T Consensus 212 ~Gla~AN~laAv~aGa~~v--d~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~~ 265 (307)
T 1ydo_A 212 RGTALANMVTALQMGITVF--DGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIK 265 (307)
T ss_dssp GSCHHHHHHHHHHHTCCEE--EEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTCB
T ss_pred CchHHHHHHHHHHhCCCEE--EEcccccCCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 3344778888999999865 554 7755 78999988887777766643
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.5 Score=41.48 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=52.3
Q ss_pred hhHHHHHHHhhc--ccccEEeecCccc--------ccCChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHH
Q 025344 40 HNVLEDIFESMG--QFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFK 104 (254)
Q Consensus 40 ~~~~~DlLe~ag--~yID~lKfg~GT~--------~l~~~~~l~eKi~l~~~~-gV~v~----~Gtl~E~a~~qg~~~~~ 104 (254)
+..+.+..+.+- ...|++-+.+++. ...+.+.+.+.++.+++. ++++. ++ + ..+.
T Consensus 110 ~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~-~---------~~~~ 179 (311)
T 1ep3_A 110 EADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN-V---------TDIV 179 (311)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSC-S---------SCSH
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-h---------HHHH
Confidence 345555555555 5789988877643 234567788999988887 77544 33 2 2567
Q ss_pred HHHHHHHHcCCCEEEecCC
Q 025344 105 EYVEDCKQVGFDTIELNVG 123 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdG 123 (254)
++.+.+.+.|.++|-++++
T Consensus 180 ~~a~~l~~~G~d~i~v~~~ 198 (311)
T 1ep3_A 180 PIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp HHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 7888999999999999874
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.21 Score=42.34 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=75.6
Q ss_pred HHHHHHHhhccc-ccEEeecCcc-----------cccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHH
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGS-----------HSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT-----------~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~ 108 (254)
.+++.++.+.+. .|.+=+.... ...++++.+++.-++++++|+.++. +.+.. ...+.+++.++
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~ 98 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA----EKSSDWEKMFK 98 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC----SSTTHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC----ccHHHHHHHHH
Confidence 355666655555 7888877543 1234556689999999999998775 33322 23457999999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
.|+.+|.+.|-+.-| .+.+.++.+.+++.|.++.-|-.-
T Consensus 99 ~A~~lGa~~v~~~~~-----~~~~~~l~~~a~~~gv~l~~En~~ 137 (262)
T 3p6l_A 99 FAKAMDLEFITCEPA-----LSDWDLVEKLSKQYNIKISVHNHP 137 (262)
T ss_dssp HHHHTTCSEEEECCC-----GGGHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHcCCCEEEecCC-----HHHHHHHHHHHHHhCCEEEEEeCC
Confidence 999999999999865 467789999999999998877764
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.27 Score=41.75 Aligned_cols=92 Identities=8% Similarity=0.107 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+++.++.++++||++||+..... .++.++..++.+.++++|+++.+ +..-.+. -.+.+ .|+.
T Consensus 13 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~l~~-~~~~-------- 82 (285)
T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ-ILPHDSYLINLGH-PVTE-------- 82 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG-BCCBCCTTCCTTC-SSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCcee-EEecCCcccccCC-CCHH--------
Confidence 588999999999999999953322 35667888899999999998511 1110000 01111 1110
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
......+.+.+.++..-+.||..|.+-.-
T Consensus 83 ----~r~~~~~~~~~~i~~A~~lGa~~v~~~~g 111 (285)
T 1qtw_A 83 ----ALEKSRDAFIDEMQRCEQLGLSLLNFHPG 111 (285)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECcC
Confidence 00123455666666677789999988653
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.57 Score=40.74 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccc-cccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRD-RAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d-~~~~~~~~~~ 174 (254)
.+.+.++.++++||++||+.... ..++.++..++-+.+++.|+++++=.+. .. -.+.+ .| +.
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~h~~-~~-~nl~s-~d~~~-------- 87 (303)
T 3aal_A 19 MLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAP-YI-INIGN-TTNLD-------- 87 (303)
T ss_dssp THHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEEEECC-TT-CCTTC-SSCHH--------
T ss_pred cHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEEEecc-cc-ccCCC-CCcHH--------
Confidence 68899999999999999994322 1344677778888999999953321111 00 01111 11 10
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHh---ccC----CCceEEecC---------
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG---RLG----LEKTMFEAT--------- 238 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~---~l~----~~klifEAP--------- 238 (254)
....+.+.+.+.++.+-+.||..|++-.-... +.-+.+..+.+++ .+. -=+|.+|.-
T Consensus 88 ----~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~---~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~ 160 (303)
T 3aal_A 88 ----TFSLGVDFLRAEIERTEAIGAKQLVLHPGAHV---GAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGR 160 (303)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSEEEECCEECT---TSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEECS
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCcCC---CCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccCC
Confidence 01123566677777777889999988653211 1122233333322 221 136888875
Q ss_pred CchhHHHHHHHhC
Q 025344 239 NPRTSEWFIRRYG 251 (254)
Q Consensus 239 ~k~qQ~~~I~~~G 251 (254)
...+-..+|...+
T Consensus 161 t~~~~~~li~~v~ 173 (303)
T 3aal_A 161 TFEELAYIIDGVA 173 (303)
T ss_dssp SHHHHHHHHHHCT
T ss_pred CHHHHHHHHHhcC
Confidence 3445566888777
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.28 Score=43.60 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCEEEecCCcc--------cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSL--------EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti--------~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
+-++.+.+.|++.|-|+..+- ..+.++ -.+.|+.+++.|+.|-.+++.-++. .|.
T Consensus 83 ~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~------e~~------- 149 (295)
T 1ydn_A 83 KGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVEC------PYD------- 149 (295)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEE------TTT-------
T ss_pred HHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecC------CcC-------
Confidence 456788889999999986332 344433 2456899999999997777763221 110
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..+++.+++.++...++||+.|-+= |..|...+..+.++++.+
T Consensus 150 -------~~~~~~~~~~~~~~~~~~G~d~i~l~-----Dt~G~~~P~~~~~lv~~l 193 (295)
T 1ydn_A 150 -------GPVTPQAVASVTEQLFSLGCHEVSLG-----DTIGRGTPDTVAAMLDAV 193 (295)
T ss_dssp -------EECCHHHHHHHHHHHHHHTCSEEEEE-----ETTSCCCHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHhcCCCEEEec-----CCCCCcCHHHHHHHHHHH
Confidence 11269999999999999999987653 666777777766666543
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.21 Score=43.35 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=61.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
++++.+.|.|.|-+.. +.-.+++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~aGad~I~l~~-~~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (229)
T 3q58_A 94 VDALAQAGADIIAFDA-SFRSRPVDIDSLLTRIRLHGLLAMADCST---------------------------------- 138 (229)
T ss_dssp HHHHHHHTCSEEEEEC-CSSCCSSCHHHHHHHHHHTTCEEEEECSS----------------------------------
T ss_pred HHHHHHcCCCEEEECc-cccCChHHHHHHHHHHHHCCCEEEEecCC----------------------------------
Confidence 6778999999997654 44445567779999999988877664321
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccc--CCCccHHHHHHHHhc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGR 227 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~--~g~~r~d~i~~ii~~ 227 (254)
.+.+++..++||++|.+..+|.... ......+++.++.+.
T Consensus 139 -~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~ 180 (229)
T 3q58_A 139 -VNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA 180 (229)
T ss_dssp -HHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT
T ss_pred -HHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc
Confidence 5667788999999998877765432 233456778887764
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.33 Score=46.67 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+.... ++.++..++++.+++.|+.++.|++-
T Consensus 123 i~ea~~~GAD~ILLi~a~--l~~~~l~~l~~~a~~lgm~~LvEvh~---------------------------------- 166 (452)
T 1pii_A 123 IYLARYYQADACLLMLSV--LDDDQYRQLAAVAHSLEMGVLTEVSN---------------------------------- 166 (452)
T ss_dssp HHHHHHTTCSEEEEETTT--CCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEEccc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 455899999999998885 66788999999999999999998865
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCc-eEEecC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEAT 238 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~k-lifEAP 238 (254)
.+++++.+++||++|-|+-|++-. -+++-+...+++..+|.+. +|-|+=
T Consensus 167 -~eE~~~A~~lga~iIGinnr~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsG 216 (452)
T 1pii_A 167 -EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESG 216 (452)
T ss_dssp -HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESC
T ss_pred -HHHHHHHHHCCCCEEEEeCCCCCC--CCCCHHHHHHHHHhCCCCCeEEEECC
Confidence 567788899999999999998733 3555677788888887553 566765
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.27 Score=42.20 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.+++.++.++++||+.||+....+ .++.++..++-+.+++.|+++..-.+... .-.+.+ .|++ ..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~l~~-~d~~------------~r 83 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSA-EQNLSS-PDPD------------IR 83 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCG-GGCTTC-SCHH------------HH
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCC-CcCCCC-CCHH------------HH
Confidence 689999999999999999997643 56788889999999999999876222110 001111 1111 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
....+.+.+.++..-+.||..|.+
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~ 107 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGG 107 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeeec
Confidence 112455566666666789999975
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.82 Score=41.50 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=86.6
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcc--cccCChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT--~~l~~~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
.+..+.+.++.+.+ -++-+-|++|+ -...+.+.+.+.++.+++.|+.++ +|. .-++.++.+++.
T Consensus 100 s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~-----------l~~e~l~~L~~a 168 (369)
T 1r30_A 100 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGT-----------LSESQAQRLANA 168 (369)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSS-----------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCC-----------CCHHHHHHHHHC
Confidence 44555555544322 26777787765 334566779999999999988654 242 236778888999
Q ss_pred CCCEEEecCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 114 GFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 114 GF~~IEISdGti---------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
|++.|-||=.+- .-+.+++.+.|+.+++.|+.+. ++.-.+. . ++.
T Consensus 169 Gvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~I~Gl------~------------------et~ 222 (369)
T 1r30_A 169 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC--SGGIVGL------G------------------ETV 222 (369)
T ss_dssp CCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEE--CCEEECS------S------------------CCH
T ss_pred CCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeee--eeeEeeC------C------------------CCH
Confidence 999999886551 1456889999999999998654 3443221 1 136
Q ss_pred HHHHHHHHHHHHcC--CcEEEE
Q 025344 185 DLLIRRAERCLEAG--ADMIMI 204 (254)
Q Consensus 185 ~~~i~~~~~dLeAG--A~~Vii 204 (254)
+++++.++.-.+.| .+.|-+
T Consensus 223 ed~~~~l~~l~~l~~~~~~i~~ 244 (369)
T 1r30_A 223 KDRAGLLLQLANLPTPPESVPI 244 (369)
T ss_dssp HHHHHHHHHHHSSSSCCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEe
Confidence 77777777777777 666554
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=93.67 E-value=1.1 Score=40.30 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=82.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+..- .++.++..++++.+++.|+.++.|++-
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~lGl~~lvevh~---------------------------------- 178 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFALGMDALIEVHD---------------------------------- 178 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 66789999999999766 457888899999999999999988743
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~-klifEAP~-k~qQ~~~I~~~Gp~ 253 (254)
.+++++.+++||++|=|..|.+.. -.+.-+...+++..++.+ -+|-|.=- ...+...+...|.+
T Consensus 179 -~eEl~~A~~~ga~iIGinnr~l~t--~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~ 244 (272)
T 3tsm_A 179 -EAEMERALKLSSRLLGVNNRNLRS--FEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIG 244 (272)
T ss_dssp -HHHHHHHTTSCCSEEEEECBCTTT--CCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCC
T ss_pred -HHHHHHHHhcCCCEEEECCCCCcc--CCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence 455677889999999998886522 234566777888888754 45677764 55666777777754
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=93.63 E-value=1 Score=43.30 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=104.5
Q ss_pred HHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCceec-----CCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 44 EDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 44 ~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~-----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
+..++.+ ..=+|.+-+-..++-+ +.+++-|+.++++|..+. ..+. ..+++.+-+..+.+.+.|.+.
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~---~ni~~~i~~ak~~G~~v~~~i~~~~~~-----~~~~e~~~~~a~~l~~~Gad~ 174 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDV---RNMQQALQAVKKMGAHAQGTLCYTTSP-----VHNLQTWVDVAQQLAELGVDS 174 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEECCCCT-----TCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHhCCcCEEEEEEecCHH---HHHHHHHHHHHHCCCEEEEEEEeeeCC-----CCCHHHHHHHHHHHHHCCCCE
Confidence 3344433 3448888877665555 459999999999999762 2221 124446677777888999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|=|.|-.--+.+.+-.++|+.+++. +. ..+++-+ +. |...-+..+...++|
T Consensus 175 I~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~i~~H~-Hn-------------------------d~GlAvAN~laAv~A 225 (464)
T 2nx9_A 175 IALKDMAGILTPYAAEELVSTLKKQ-VD--VELHLHC-HS-------------------------TAGLADMTLLKAIEA 225 (464)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHHH-CC--SCEEEEE-CC-------------------------TTSCHHHHHHHHHHT
T ss_pred EEEcCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHHHHHHHHHh
Confidence 9999988888888888999999885 22 2234311 11 223347788888999
Q ss_pred CCcEEEEecc--cccccCCCccHHHHHHHHhccCCC
Q 025344 198 GADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 198 GA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
||+.| ++- |+=...||...+.+-..+...+.+
T Consensus 226 Ga~~V--D~ti~g~gertGN~~lE~lv~~L~~~g~~ 259 (464)
T 2nx9_A 226 GVDRV--DTAISSMSGTYGHPATESLVATLQGTGYD 259 (464)
T ss_dssp TCSEE--EEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred CCCEE--EEeccccCCCCcCHHHHHHHHHHHhcCCC
Confidence 99955 664 887889999998887777766643
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=93.63 E-value=1.1 Score=39.84 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=75.0
Q ss_pred chhHHHHHHHhhcc-cccEEeecCccc-ccCChhHHH--------------HHHHHHHhCC--ceecCCcHHHHHHHhCC
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQHD--VYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~-~l~~~~~l~--------------eKi~l~~~~g--V~v~~Gtl~E~a~~qg~ 100 (254)
.+..+.+++...-+ =.|++=+|.=-| .+.+-..++ .-.++.++.- +++..=|++...+..|
T Consensus 26 ~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G- 104 (252)
T 3tha_A 26 NLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYG- 104 (252)
T ss_dssp CHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHhh-
Confidence 34777777776655 489999997443 233333344 3334444332 3333337888888886
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+++|++.|++.|.+.+=|-| +|.++..++.+.++++|+.+++=+
T Consensus 105 --~e~F~~~~~~aGvdG~IipD----LP~eE~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 105 --LEKFVKKAKSLGICALIVPE----LSFEESDDLIKECERYNIALITLV 148 (252)
T ss_dssp --HHHHHHHHHHTTEEEEECTT----CCGGGCHHHHHHHHHTTCEECEEE
T ss_pred --HHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 89999999999999999887 888899999999999999876644
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=93.53 E-value=1.4 Score=39.47 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=86.8
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+|+| +.+++.+|=|+|=+-... ++.++..++++.+++.||.|+.|+.-
T Consensus 114 id~yQI~eAr~~GADaILLI~a~--L~~~~l~~l~~~A~~lGl~~LvEVh~----------------------------- 162 (258)
T 4a29_A 114 VKESQIDDAYNLGADTVLLIVKI--LTERELESLLEYARSYGMEPLILIND----------------------------- 162 (258)
T ss_dssp CSHHHHHHHHHHTCSEEEEEGGG--SCHHHHHHHHHHHHHTTCCCEEEESS-----------------------------
T ss_pred ccHHHHHHHHHcCCCeeehHHhh--cCHHHHHHHHHHHHHHhHHHHHhcch-----------------------------
Confidence 5565 788999999999765543 57888899999999999999999865
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPK 253 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP-~k~qQ~~~I~~~Gp~ 253 (254)
-+++++.+++||+.|-|..|.+ .+-++.-+...+++..+|.+.+ |-|.= ....+...++..|.|
T Consensus 163 ------~~El~rAl~~~a~iIGINNRnL--~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~ 228 (258)
T 4a29_A 163 ------ENDLDIALRIGARFIGIMSRDF--ETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVN 228 (258)
T ss_dssp ------HHHHHHHHHTTCSEEEECSBCT--TTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCC
T ss_pred ------HHHHHHHhcCCCcEEEEeCCCc--cccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCC
Confidence 4556778999999999999866 2345667778889899987765 55655 345667778888765
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.82 Score=41.73 Aligned_cols=165 Identities=12% Similarity=0.111 Sum_probs=109.7
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHH
Q 025344 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKE 105 (254)
Q Consensus 26 lT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~ 105 (254)
+.++..|+... ...++...++ -+|.+-+.. .+...+..++-++.++++|+.+... +|.+..-.++.+.+
T Consensus 85 i~~l~~p~~~~---~~~i~~a~~a---Gvd~v~I~~---~~s~~~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~e~~~~ 153 (345)
T 1nvm_A 85 IATLLLPGIGS---VHDLKNAYQA---GARVVRVAT---HCTEADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEKLAE 153 (345)
T ss_dssp EEEEECBTTBC---HHHHHHHHHH---TCCEEEEEE---ETTCGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHHHHH
T ss_pred EEEEecCCccc---HHHHHHHHhC---CcCEEEEEE---eccHHHHHHHHHHHHHHCCCEEEEE--EEeCCCCCHHHHHH
Confidence 44444566421 2344444443 577776642 2333356899999999999966543 12223334456788
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
..+.+.+.|.+.|=+.|-+-.+.+.+-.++|+.++++ +.....+++-+ + .|..
T Consensus 154 ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~pi~~H~-H-------------------------n~~G 206 (345)
T 1nvm_A 154 QGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAV-LKPETQVGMHA-H-------------------------HNLS 206 (345)
T ss_dssp HHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHH-SCTTSEEEEEC-B-------------------------CTTS
T ss_pred HHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHh-cCCCceEEEEE-C-------------------------CCcc
Confidence 8888899999999999988888889989999999985 10012234311 1 1233
Q ss_pred HHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 186 LLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.-+..+...++|||+. |++- |+=...||...+.+-..+...|.
T Consensus 207 ~avAn~laA~~aGa~~--vd~tv~GlG~~aGN~~le~lv~~L~~~g~ 251 (345)
T 1nvm_A 207 LGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLGW 251 (345)
T ss_dssp CHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCE--EEecchhccCCccCcCHHHHHHHHHhcCC
Confidence 3488888999999986 5775 77778999998888777765553
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.35 Score=42.67 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC------cccC-----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG------SLEI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG------ti~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
.+++.++.++++||++||+... ...+ +.++..++-+.+++.|+++.+ ++...+.... +
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~~~~~~~~~----~------ 105 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SHLTPSLREY----T------ 105 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEE-EBCCCSCCCC----C------
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEE-eecccccccc----c------
Confidence 6999999999999999999853 1222 233677888889999998754 2221111111 0
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+..+ ....+.+-+.++.+-+.||..|++-
T Consensus 106 --~~~~----~~~~~~~~~~i~~A~~lG~~~v~~~ 134 (305)
T 3obe_A 106 --KENM----PKFDEFWKKATDIHAELGVSCMVQP 134 (305)
T ss_dssp --GGGH----HHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred --hhhH----HHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 0000 1124455555666667799999984
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.34 Score=42.13 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
++++.+.|.|.|-+... .-.+++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (232)
T 3igs_A 94 VDALAQAGAAIIAVDGT-ARQRPVAVEALLARIHHHHLLTMADCSS---------------------------------- 138 (232)
T ss_dssp HHHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECCS----------------------------------
T ss_pred HHHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHHHCCCEEEEeCCC----------------------------------
Confidence 56789999999977544 3344467779999999988877654321
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccc--CCCccHHHHHHHHhc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGR 227 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~--~g~~r~d~i~~ii~~ 227 (254)
.+.+++..++||++|.+-.+|.... ......+++.++.+.
T Consensus 139 -~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~ 180 (232)
T 3igs_A 139 -VDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA 180 (232)
T ss_dssp -HHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT
T ss_pred -HHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc
Confidence 5667788999999998877765432 234466788888764
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.32 Score=43.97 Aligned_cols=132 Identities=16% Similarity=0.249 Sum_probs=79.3
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
.+...+..+|- ++++=.+ .++.+.+++.++.+++. +.++ | .++ +... .++++++.|.+.|++.|+
T Consensus 27 ~la~av~~aG~-lG~i~~~-----~~~~~~~~~~i~~i~~~~~~p~--gvnl~---~~~~--~~~~~~~~a~~~g~d~V~ 93 (332)
T 2z6i_A 27 DLAGAVSKAGG-LGIIGGG-----NAPKEVVKANIDKIKSLTDKPF--GVNIM---LLSP--FVEDIVDLVIEEGVKVVT 93 (332)
T ss_dssp HHHHHHHHHTS-BEEEECT-----TCCHHHHHHHHHHHHHHCCSCE--EEEEC---TTST--THHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhCCC-cEEeCCC-----CCCHHHHHHHHHHHHHhcCCCE--EEEec---CCCC--CHHHHHHHHHHCCCCEEE
Confidence 44555666664 6666222 23555677777777753 1111 2 111 0122 588999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
++.|. | .++++.+++.|+++..-+ . + ++.++...++||
T Consensus 94 ~~~g~---p----~~~i~~l~~~g~~v~~~v---------~----------------------~----~~~a~~~~~~Ga 131 (332)
T 2z6i_A 94 TGAGN---P----SKYMERFHEAGIIVIPVV---------P----------------------S----VALAKRMEKIGA 131 (332)
T ss_dssp ECSSC---G----GGTHHHHHHTTCEEEEEE---------S----------------------S----HHHHHHHHHTTC
T ss_pred ECCCC---h----HHHHHHHHHcCCeEEEEe---------C----------------------C----HHHHHHHHHcCC
Confidence 99883 3 246677777777665321 0 1 445667788999
Q ss_pred cEEEEecc--cccccCCCccHHHHHHHHhccC
Q 025344 200 DMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 200 ~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|.|++++. |-... .....+++.++.+.++
T Consensus 132 D~i~v~g~~~GG~~g-~~~~~~ll~~i~~~~~ 162 (332)
T 2z6i_A 132 DAVIAEGMEAGGHIG-KLTTMTLVRQVATAIS 162 (332)
T ss_dssp SCEEEECTTSSEECC-SSCHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCCCC-CccHHHHHHHHHHhcC
Confidence 99999875 22111 1233466666665543
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=93.19 E-value=1.4 Score=40.87 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHH---hhcccccEEeecCccc------ccCChhHHHHHHHHHHh--------CCce----ecCC-cHHHHHHHhC
Q 025344 42 VLEDIFE---SMGQFVDGLKFSGGSH------SLMPKPFIEEVVKRAHQ--------HDVY----VSTG-DWAEHLIRNG 99 (254)
Q Consensus 42 ~~~DlLe---~ag~yID~lKfg~GT~------~l~~~~~l~eKi~l~~~--------~gV~----v~~G-tl~E~a~~qg 99 (254)
..+|+.+ ..++|.|++=+=.||- .+..++.+.+.++..++ .+++ +.|+ +.
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~-------- 233 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS-------- 233 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH--------
T ss_pred CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCH--------
Confidence 4555554 5567788877766542 45566778888777654 3443 4444 22
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccC
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (254)
+.+.++.+.|.+.|.|.|-+++.+...
T Consensus 234 -~~~~~ia~~~~~aGadgi~v~ntt~~r 260 (367)
T 3zwt_A 234 -QDKEDIASVVKELGIDGLIVTNTTVSR 260 (367)
T ss_dssp -HHHHHHHHHHHHHTCCEEEECCCBSCC
T ss_pred -HHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 157788899999999999999998654
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=2.7 Score=38.49 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=108.9
Q ss_pred hhHHHHHHHhhcccc--cEEeecCcccccCChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 40 HNVLEDIFESMGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 40 ~~~~~DlLe~ag~yI--D~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
+..++.+++.|-+.= =+|-++-|+...++.+.+...+..+.+++|+|+. |..+ +.+..|-+.
T Consensus 27 ~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~~~VPValHlDHg~~~------------e~~~~ai~~ 94 (305)
T 1rvg_A 27 MEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRA 94 (305)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHhCCCcEEEECCCCCCH------------HHHHHHHHc
Confidence 344555555443211 1344444444333434444554444447776664 3344 344566789
Q ss_pred CCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
||+.|=|.-... |.++= .++++.+...|.-|--|+|.=-+. +-+.. ...-...+| ||++..+
T Consensus 95 GFtSVMiDgS~~--p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~-Ed~~~-~~~~~~~yT----------~Peea~~ 160 (305)
T 1rvg_A 95 GFTSVMIDKSHE--DFETNVRETRRVVEAAHAVGVTVEAELGRLAGI-EEHVA-VDEKDALLT----------NPEEARI 160 (305)
T ss_dssp TCSEEEECCTTS--CHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCS-CC-------CCTTCC----------CHHHHHH
T ss_pred CCCeeeeCCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-cCCcc-ccccccccC----------CHHHHHH
Confidence 999998866544 44432 367888999999999999984221 10000 000011133 6777766
Q ss_pred HHHHHHHcCCcEEEEec---ccccc--cCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCC
Q 025344 190 RAERCLEAGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPK 253 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEa---rgi~d--~~g~~r~d~i~~ii~~l~~~klifEAP-~k~qQ~~~I~~~Gp~ 253 (254)
.+++ -|.|.+=+== -|.|. .+-.++.|.+++|-+.++.-=++==+. -|+..+..|+.||-+
T Consensus 161 Fv~~---TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~ 227 (305)
T 1rvg_A 161 FMER---TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGE 227 (305)
T ss_dssp HHHH---HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred HHHH---HCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccc
Confidence 6654 4888665432 28998 566899999999999887443333332 467777888888865
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.64 Score=42.37 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--------------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG--------------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--------------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
..+.|++.+|+.||..| ++=- -..|..++-.++|+++++.||...+=+
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v----------------- 170 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYV----------------- 170 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEE-----------------
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEec-----------------
Confidence 58999999999999999 8776 345778888899999999888744410
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc----cccccCCCccH----HHHHHHH---hccCCC-ceEE
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRA----DIIAKVI---GRLGLE-KTMF 235 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar----gi~d~~g~~r~----d~i~~ii---~~l~~~-klif 235 (254)
. + .++++.-.+||+|.|.+|-- |+....-.+.. +.++++. .++.++ .+|.
T Consensus 171 ---~-----------~----~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc 232 (286)
T 2p10_A 171 ---F-----------S----PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILS 232 (286)
T ss_dssp ---C-----------S----HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred ---C-----------C----HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEe
Confidence 0 1 67788889999999999986 55443322222 2444444 445555 4556
Q ss_pred ec-CC-chhHHHHHHHh
Q 025344 236 EA-TN-PRTSEWFIRRY 250 (254)
Q Consensus 236 EA-P~-k~qQ~~~I~~~ 250 (254)
-| |- ..+-+.++.+.
T Consensus 233 ~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 233 HGGPIANPEDARFILDS 249 (286)
T ss_dssp ESTTCCSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhc
Confidence 66 53 23344444444
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.44 Score=40.44 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+++.++.++++||+.||+..+. ..++.++..++.+.++++|+++.+ +..-.+. -.+.+ .|+.
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~h~~~~~~~~~-~~~~-------- 82 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWEN-AFCHSGYLINLAS-PKDD-------- 82 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGG-EEEECCTTCCTTC-SSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcce-eEEecccccccCC-CCHH--------
Confidence 57788999999999999997532 145667888899999999999621 2221110 01111 1110
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccH-------HHHHHHHhccCCCceEEecC---------
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAKVIGRLGLEKTMFEAT--------- 238 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~i~~ii~~l~~~klifEAP--------- 238 (254)
......+.+.+.++..-+.||..|.+-.-... +.-+. +.+.++++..--=+|.+|.-
T Consensus 83 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~---~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~ 155 (287)
T 2x7v_A 83 ----IWQKSVELLKKEVEICRKLGIRYLNIHPGSHL---GTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGY 155 (287)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCCEEEECCEECT---TSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECS
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEecCCCC---CCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCC
Confidence 00112455666666677789999988542111 11112 23344443311125777763
Q ss_pred CchhHHHHHHHhC
Q 025344 239 NPRTSEWFIRRYG 251 (254)
Q Consensus 239 ~k~qQ~~~I~~~G 251 (254)
+..+-..++++.+
T Consensus 156 ~~~~~~~l~~~~~ 168 (287)
T 2x7v_A 156 KLEQLKKIRDLVD 168 (287)
T ss_dssp SHHHHHHHHHHCS
T ss_pred CHHHHHHHHHhcC
Confidence 2344557777776
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=92.71 E-value=3 Score=37.59 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=83.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
..+......+| ++.++= + ..++.+.+++.++.+++.- .++--+.+. .+. .++++++.+.+.|.+.|.
T Consensus 40 ~~la~av~~aG-glG~i~----~-~~~~~~~l~~~i~~i~~~~~~p~gVnl~~----~~~--~~~~~~~~~~~~g~d~V~ 107 (326)
T 3bo9_A 40 PTLAAAVSEAG-GLGIIG----S-GAMKPDDLRKAISELRQKTDKPFGVNIIL----VSP--WADDLVKVCIEEKVPVVT 107 (326)
T ss_dssp HHHHHHHHHTT-SBEEEE----C-TTCCHHHHHHHHHHHHTTCSSCEEEEEET----TST--THHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCC-CcEEeC----C-CCCCHHHHHHHHHHHHHhcCCCEEEEEec----cCC--CHHHHHHHHHHCCCCEEE
Confidence 34555556666 666662 1 2235667888888888752 222112111 122 689999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
++-|. | .++++.+++.|.++...+. + .+.+++..++||
T Consensus 108 l~~g~---p----~~~~~~l~~~g~~v~~~v~-------------------------------s----~~~a~~a~~~Ga 145 (326)
T 3bo9_A 108 FGAGN---P----TKYIRELKENGTKVIPVVA-------------------------------S----DSLARMVERAGA 145 (326)
T ss_dssp EESSC---C----HHHHHHHHHTTCEEEEEES-------------------------------S----HHHHHHHHHTTC
T ss_pred ECCCC---c----HHHHHHHHHcCCcEEEEcC-------------------------------C----HHHHHHHHHcCC
Confidence 98873 4 3567788888777654210 1 455667789999
Q ss_pred cEEEEecc--cccccCCCccHHHHHHHHhcc
Q 025344 200 DMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 200 ~~ViiEar--gi~d~~g~~r~d~i~~ii~~l 228 (254)
|.|++++. |-... .....+++.++.+.+
T Consensus 146 D~i~v~g~~~GG~~G-~~~~~~ll~~i~~~~ 175 (326)
T 3bo9_A 146 DAVIAEGMESGGHIG-EVTTFVLVNKVSRSV 175 (326)
T ss_dssp SCEEEECTTSSEECC-SSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCccCC-CccHHHHHHHHHHHc
Confidence 99999985 21111 123456677776654
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.55 Score=39.91 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.+++.++.++++||+.||+..... ..+..+..++.+.+++.|+++..-.+.-. ...+.+ .|+. ..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~l~~-~d~~------------~r 83 (290)
T 2qul_A 18 DFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCCIGLKS-EYDFAS-PDKS------------VR 83 (290)
T ss_dssp CHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEEEEECG-GGCTTC-SCHH------------HH
T ss_pred cHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEecCCCC-CCCCCC-CCHH------------HH
Confidence 689999999999999999986542 33446777899999999999877322100 001111 1110 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
....+.+.+.++..-+.||..|.+
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~ 107 (290)
T 2qul_A 84 DAGTEYVKRLLDDCHLLGAPVFAG 107 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe
Confidence 112455666666667789999985
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.54 Score=39.91 Aligned_cols=116 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+++.++.++++||++|||.... ..++.++..++-+.++++|+..++ .-.+. -.+.+ |+.
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~---~h~~~~~~l~s--~~~-------- 81 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAV---IHASYLVNLGA--EGE-------- 81 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEE---EECCTTCCTTC--SST--------
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEE---EecCcccCCCC--CHH--------
Confidence 58888999999999999995532 245577888888999999993322 21110 01111 111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhc----cCCCceEEecC
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR----LGLEKTMFEAT 238 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~----l~~~klifEAP 238 (254)
....+.+.+.+.++..-+.||..|.+-.-.. .. +.-.+-+.++++. .|+ +|.+|.-
T Consensus 82 ----~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~--~~~~~~l~~l~~~a~~~~gv-~l~lEn~ 141 (270)
T 3aam_A 82 ----LWEKSVASLADDLEKAALLGVEYVVVHPGSG-RP--ERVKEGALKALRLAGVRSRP-VLLVENT 141 (270)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CH--HHHHHHHHHHHHHHTCCSSS-EEEEECC
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CH--HHHHHHHHHHHHhhcccCCC-EEEEecC
Confidence 0122466677777777788999998865322 11 1112233444432 333 6788864
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.31 Score=44.58 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 025344 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 148 (254)
Q Consensus 71 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v--~~ 148 (254)
.+++-++.++++|..|..|- |.+-.-.++.+-+..+.+.++|.+.|-|.|-.--+.+.+-.++|+.+++. +.- ..
T Consensus 123 ~~~~~v~~a~~~g~~v~f~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~ 199 (325)
T 3eeg_A 123 MAVAAVKQAKKVVHEVEFFC--EDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDN-VSNIDKA 199 (325)
T ss_dssp TTHHHHHHHHTTSSEEEEEE--ETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHH-CSCGGGS
T ss_pred HHHHHHHHHHHCCCEEEEEc--cccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHh-CCCCCce
Confidence 36688999999999887652 22223444567777888889999999999999899999999999999884 110 01
Q ss_pred eeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHh
Q 025344 149 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 149 E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
.++.- +-.|...-+..+...++|||+. |++- |+=...||...+.+-..+.
T Consensus 200 ~i~~H--------------------------~Hnd~GlA~AN~laA~~aGa~~--vd~tv~GlGer~GN~~lE~vv~~L~ 251 (325)
T 3eeg_A 200 ILSAH--------------------------CHNDLGLATANSLAALQNGARQ--VECTINGIGERAGNTALEEVVMAME 251 (325)
T ss_dssp EEEEC--------------------------BCCTTSCHHHHHHHHHHHTCCE--EEEBGGGCCSTTCCCBHHHHHHHHH
T ss_pred EEEEE--------------------------eCCCCCHHHHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHH
Confidence 23331 1112334478888899999996 4664 8888999999887766664
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.55 Score=41.94 Aligned_cols=144 Identities=9% Similarity=0.078 Sum_probs=88.9
Q ss_pred HHHhhcccccEEeecCccccc-CC--hhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 46 IFESMGQFVDGLKFSGGSHSL-MP--KPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~~l-~~--~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.|..+| ||.+=+||+.+.- .| .+ ..+.++.+++. |+.+. .|. .+ .+-++.+.+.|.+.|-|+
T Consensus 35 ~L~~~G--v~~IE~g~~~~~~~~p~~~d-~~~~~~~~~~~~~~~~~--~l~-----~~----~~~i~~a~~ag~~~v~i~ 100 (298)
T 2cw6_A 35 MLSEAG--LSVIETTSFVSPKWVPQMGD-HTEVLKGIQKFPGINYP--VLT-----PN----LKGFEAAVAAGAKEVVIF 100 (298)
T ss_dssp HHHHTT--CSEECCEECCCTTTCGGGTT-HHHHHHHSCCCTTCBCC--EEC-----CS----HHHHHHHHHTTCSEEEEE
T ss_pred HHHHcC--cCEEEECCCcCcccccccCC-HHHHHHHHhhCCCCEEE--EEc-----CC----HHhHHHHHHCCCCEEEEE
Confidence 344444 8899999875531 11 12 24444444443 33322 121 23 234778888999999997
Q ss_pred CCcccCC------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEIP------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i~------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-+.- .+.-.+.|+.+++.|++|-..+..- ++...+ +..+++.+++
T Consensus 101 ~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~-----~~~~~~---------------~~~~~~~~~~ 160 (298)
T 2cw6_A 101 GAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCA-----LGCPYE---------------GKISPAKVAE 160 (298)
T ss_dssp EESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETT-----TCBTTT---------------BSCCHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEE-----eeCCcC---------------CCCCHHHHHH
Confidence 7554331 1244577999999999874333221 111111 1126899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.|- ++|..|-..+..+.++++.+
T Consensus 161 ~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~~l 194 (298)
T 2cw6_A 161 VTKKFYSMGCYEIS-----LGDTIGVGTPGIMKDMLSAV 194 (298)
T ss_dssp HHHHHHHTTCSEEE-----EEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE-----ecCCCCCcCHHHHHHHHHHH
Confidence 99999999999774 56888888888887777544
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.21 Score=45.82 Aligned_cols=122 Identities=16% Similarity=0.313 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~ 139 (254)
..+.|.|+-.++. +|++++..|.+--+. .+..-++.+.+.+.|.++|+||+|... .++.-..++++.+
T Consensus 195 r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~i 272 (340)
T 3gr7_A 195 RFLGEVIDAVREVWDGPLFVRISASDYHPDGLT--AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELI 272 (340)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC--GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHH
Confidence 3456666666653 446677544432111 125667788888899999999988642 1233345677777
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCCCccH
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSLRA 218 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~~r~ 218 (254)
++. +++. .--.| .+. | .+.+++.|++| ||.|++ +|.+.. ++
T Consensus 273 k~~-------~~iP--Vi~~G--------gI~-----------s----~e~a~~~L~~G~aD~V~i-GR~~la-----nP 314 (340)
T 3gr7_A 273 RRE-------ADIP--TGAVG--------LIT-----------S----GWQAEEILQNGRADLVFL-GRELLR-----NP 314 (340)
T ss_dssp HHH-------TTCC--EEEES--------SCC-----------C----HHHHHHHHHTTSCSEEEE-CHHHHH-----CT
T ss_pred HHH-------cCCc--EEeeC--------CCC-----------C----HHHHHHHHHCCCeeEEEe-cHHHHh-----Cc
Confidence 763 2210 00000 111 2 56778889999 999998 465442 26
Q ss_pred HHHHHHHhccCCC
Q 025344 219 DIIAKVIGRLGLE 231 (254)
Q Consensus 219 d~i~~ii~~l~~~ 231 (254)
+++.++.+.++.+
T Consensus 315 dl~~ki~~~l~~~ 327 (340)
T 3gr7_A 315 YWPYAAARELGAK 327 (340)
T ss_dssp THHHHHHHHTTCC
T ss_pred hHHHHHHHHCCCC
Confidence 7889999888854
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.27 Score=41.46 Aligned_cols=87 Identities=18% Similarity=0.303 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCCEEEec-CCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELN-VGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS-dGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++.++.++++||+.||+. ..... ++.....++.+.+++.|+++.+ ++.-.+ +.+ .|+.
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~---~~~-~~~~------------ 77 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLA-LNALVF---FNN-RDEK------------ 77 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEE-EEEEEC---CSS-CCHH------------
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeee-eccccc---ccc-CCHH------------
Confidence 68888999999999999998 54321 2335566778888888988764 433211 111 1110
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
......+.+.+.++..-+.||..|++=
T Consensus 78 ~~~~~~~~~~~~i~~a~~lG~~~v~~~ 104 (278)
T 1i60_A 78 GHNEIITEFKGMMETCKTLGVKYVVAV 104 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 001124555666666667899988883
|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
Probab=92.26 E-value=1 Score=38.31 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.+ ++.- ...... .+.- ....|.. ..
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~l~~~gl~~~~-~~~~--~~~~~~-~~~~--~~~~~~~----r~ 89 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLFPY----DFDADVIARELKQHNLTQVL-FNMP--PGDWAA-GERG--MAAISGR----EQ 89 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSCCT----TSCHHHHHHHHHHTTCEEEE-EECC--CSCTTT-TCCB--CTTCTTC----HH
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCcEEE-EecC--CCcccc-CCCC--cCCCccH----HH
Confidence 79999999999999999998521 23456788889999999764 2211 101100 0000 0000100 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccH-------HHHHH---HHhccCCCceEEec------C-----Cc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAK---VIGRLGLEKTMFEA------T-----NP 240 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~i~~---ii~~l~~~klifEA------P-----~k 240 (254)
...+.+.+.++..-+.||..|.+-+ | . ..+.-+. +.+.+ +++..|+ +|.+|. | ..
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~v~~~~-g-~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~n~~~~~~~~~~~~ 165 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRTLHAMS-G-I-TEGLDRKACEETFIENFRYAADKLAPHGI-TVLVEPLNTRNMPGYFIVHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCB-C-B-CTTSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTTTSTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc-C-C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeeCCcccCccchhcCH
Confidence 1244555666666678999998854 3 2 2222111 22222 3344454 588894 2 34
Q ss_pred hhHHHHHHHhCC
Q 025344 241 RTSEWFIRRYGP 252 (254)
Q Consensus 241 ~qQ~~~I~~~Gp 252 (254)
.+-..++++.|+
T Consensus 166 ~~~~~l~~~v~~ 177 (269)
T 3ngf_A 166 LEAVGLVKRVNR 177 (269)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 566778888873
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.23 Score=42.56 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCC---C-------CCCccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS---D-------IPSDRDRAFGAY 170 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s---~-------v~~~~d~~~~~~ 170 (254)
.+++.++.++++||+.||+.... ..++.++..++.+.+++.|+++.+= +.-.... + +++ .|+
T Consensus 22 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~g~~~~~~~~~~~~~~~-~~~----- 94 (290)
T 3tva_A 22 GLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVI-FGGFDGESYADIPTTARTVGL-VPL----- 94 (290)
T ss_dssp SSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEE-ECCCTTCCCSSHHHHHHHSSS-CST-----
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-eeccCCcccccccccccccCC-CCH-----
Confidence 68889999999999999999743 3577888889999999999997652 2100000 0 010 011
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC--CCcc--HHHHHHH---HhccCCCceEEecC--Cch
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLR--ADIIAKV---IGRLGLEKTMFEAT--NPR 241 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~--g~~r--~d~i~~i---i~~l~~~klifEAP--~k~ 241 (254)
.. .....+.+.+.++..-+.||..|++-+- ..... ..++ .+.+.++ ++..|+ +|.+|.- .+.
T Consensus 95 ---~~----r~~~~~~~~~~i~~a~~lG~~~v~~~~G-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~ 165 (290)
T 3tva_A 95 ---ET----RASRVAEMKEISDFASWVGCPAIGLHIG-FVPESSSPDYSELVRVTQDLLTHAANHGQ-AVHLETGQESAD 165 (290)
T ss_dssp ---TT----HHHHHHHHHHHHHHHHHHTCSEEEECCC-CCCCTTSHHHHHHHHHHHHHHHHHHTTTC-EEEEECCSSCHH
T ss_pred ---HH----HHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCcccchHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCHH
Confidence 00 1123455666666666789999998642 11111 0000 1112222 333443 4666753 455
Q ss_pred hHHHHHHHhC
Q 025344 242 TSEWFIRRYG 251 (254)
Q Consensus 242 qQ~~~I~~~G 251 (254)
+-..++++.|
T Consensus 166 ~~~~l~~~~~ 175 (290)
T 3tva_A 166 HLLEFIEDVN 175 (290)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 6667888887
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=92.11 E-value=1.1 Score=40.12 Aligned_cols=104 Identities=14% Similarity=0.277 Sum_probs=69.0
Q ss_pred hhHHHHHHHhhc-ccccEEeecCccc-ccCChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHHh
Q 025344 40 HNVLEDIFESMG-QFVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIRN 98 (254)
Q Consensus 40 ~~~~~DlLe~ag-~yID~lKfg~GT~-~l~~~~~l~-----------------eKi~l~~~~--gV~v~~Gtl~E~a~~q 98 (254)
+..+.+++...- .-+|++=+|.=-| .+.+-..++ +.++-.|+. ++++..=|++...+..
T Consensus 33 ~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~ 112 (271)
T 3nav_A 33 PEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYAR 112 (271)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHH
Confidence 355555555442 2499999995321 223333343 344445544 3333322677777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
| +++|++.|++.|++.+=|. ++|.++..++++.++++|+.+++=+
T Consensus 113 g---~~~f~~~~~~aGvdGvIip----Dlp~ee~~~~~~~~~~~gl~~I~lv 157 (271)
T 3nav_A 113 G---IDDFYQRCQKAGVDSVLIA----DVPTNESQPFVAAAEKFGIQPIFIA 157 (271)
T ss_dssp C---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEEEE
T ss_pred h---HHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 5 8999999999999999886 5777888899999999998865533
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.01 E-value=1.7 Score=38.11 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=72.2
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhccc-ccEEeecCccc-ccCChhHHH-----------------HHHHHHHhC--Cc
Q 025344 26 VTEMRSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DV 84 (254)
Q Consensus 26 lT~V~DkG~~~~~g~~~~~DlLe~ag~y-ID~lKfg~GT~-~l~~~~~l~-----------------eKi~l~~~~--gV 84 (254)
+++|. +|++ .+....++++..-+. +|.+.+|.=-+ .+++-..+. +-++..+++ ++
T Consensus 20 i~~i~-~g~p---~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (262)
T 2ekc_A 20 VSYLM-VGYP---DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI 95 (262)
T ss_dssp EEEEE-TTSS---CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred EEEec-CCCC---ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 44443 6763 335566666655555 99999986322 122223343 334444444 44
Q ss_pred eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 85 YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 85 ~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
++..=|..-.++.. .+++|++.|++.|++.+=+. ++|.++-.++++.++++|+.+.+
T Consensus 96 Pi~~m~y~n~v~~~---g~~~f~~~~~~aG~dgvii~----dl~~ee~~~~~~~~~~~gl~~i~ 152 (262)
T 2ekc_A 96 PFLLMTYYNPIFRI---GLEKFCRLSREKGIDGFIVP----DLPPEEAEELKAVMKKYVLSFVP 152 (262)
T ss_dssp CEEEECCHHHHHHH---CHHHHHHHHHHTTCCEEECT----TCCHHHHHHHHHHHHHTTCEECC
T ss_pred CEEEEecCcHHHHh---hHHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 43321344555555 47999999999999988886 56778889999999999988654
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.94 E-value=1.1 Score=38.92 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=75.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
...+.+++.- +|++=+ +++.+.+++.+++-++.+|++|+.+...- ... +..+.+.++|+++|=+
T Consensus 92 ~~i~~~~~~G---ad~V~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 92 DDVDALAQAG---AAIIAV--DGTARQRPVAVEALLARIHHHHLLTMADC----------SSV-DDGLACQRLGADIIGT 155 (232)
T ss_dssp HHHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC----------CSH-HHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHcC---CCEEEE--CccccCCHHHHHHHHHHHHHCCCEEEEeC----------CCH-HHHHHHHhCCCCEEEE
Confidence 3455555544 455533 34444444679999999999999877641 011 2345567899999954
Q ss_pred cC-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 121 NV-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 121 Sd-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
+. |... ....+ .++++++++.+..|+.+-|+. + .+.+++.++
T Consensus 156 ~~~g~t~~~~~~~~~-~~~i~~l~~~~ipvIA~GGI~-----------------------------t----~~d~~~~~~ 201 (232)
T 3igs_A 156 TMSGYTTPDTPEEPD-LPLVKALHDAGCRVIAEGRYN-----------------------------S----PALAAEAIR 201 (232)
T ss_dssp TTTTSSSSSCCSSCC-HHHHHHHHHTTCCEEEESCCC-----------------------------S----HHHHHHHHH
T ss_pred cCccCCCCCCCCCCC-HHHHHHHHhcCCcEEEECCCC-----------------------------C----HHHHHHHHH
Confidence 32 2211 11112 366777776677777777772 1 455667789
Q ss_pred cCCcEEEEecccccc
Q 025344 197 AGADMIMIDSDDVCK 211 (254)
Q Consensus 197 AGA~~ViiEargi~d 211 (254)
+||+-|+| +..+++
T Consensus 202 ~GadgV~V-Gsal~~ 215 (232)
T 3igs_A 202 YGAWAVTV-GSAITR 215 (232)
T ss_dssp TTCSEEEE-CHHHHC
T ss_pred cCCCEEEE-ehHhcC
Confidence 99999999 565664
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.93 E-value=1.9 Score=38.42 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=66.9
Q ss_pred hHHHHHHHhhc-ccccEEeecCc-ccccCChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHHhC
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGG-SHSLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~G-T~~l~~~~~l~-----------------eKi~l~~~~--gV~v~~Gtl~E~a~~qg 99 (254)
..+.+++...- .=+|++=+|.= |-.+++-..++ +.++-.|+. ++++..=|.+.-.+..|
T Consensus 32 ~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 32 ELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 45555544433 34799999821 11223323333 334444443 33332226777777775
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+++|++.|++.|++.|=|. ++|.++..++++.++++|+.+++=+
T Consensus 112 ---~e~f~~~~~~aGvdgvii~----Dlp~ee~~~~~~~~~~~gl~~i~li 155 (267)
T 3vnd_A 112 ---IDEFYTKAQAAGVDSVLIA----DVPVEESAPFSKAAKAHGIAPIFIA 155 (267)
T ss_dssp ---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEECEE
T ss_pred ---HHHHHHHHHHcCCCEEEeC----CCCHhhHHHHHHHHHHcCCeEEEEE
Confidence 8999999999999999996 5677888899999999998866533
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=1 Score=42.95 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=97.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..++..+++- +|.+-+-..||-.+.+ +.+.+-++.++++|+.|..+ +|.++..+++.+-+.++.
T Consensus 114 ~di~~A~~aG---~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~--~eda~r~d~~~~~~v~~~ 188 (423)
T 3ivs_A 114 DDARVAVETG---VDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFS--SEDSFRSDLVDLLSLYKA 188 (423)
T ss_dssp HHHHHHHHTT---CSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEE--EESGGGSCHHHHHHHHHH
T ss_pred hhHHHHHHcC---CCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EccCcCCCHHHHHHHHHH
Confidence 3455555543 5566666666544321 34556789999999987754 233334444456677788
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.+.|.+.|-|.|-.--+.+.+-.++|+.+++. +. ..+++-+ +. |...-+.
T Consensus 189 ~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~-~~--~~i~~H~-Hn-------------------------d~GlAvA 239 (423)
T 3ivs_A 189 VDKIGVNRVGIADTVGCATPRQVYDLIRTLRGV-VS--CDIECHF-HN-------------------------DTGMAIA 239 (423)
T ss_dssp HHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHH-CS--SEEEEEE-BC-------------------------TTSCHHH
T ss_pred HHHhCCCccccCCccCcCCHHHHHHHHHHHHhh-cC--CeEEEEE-CC-------------------------CCchHHH
Confidence 889999999999998888888888999998874 22 2344421 21 2333477
Q ss_pred HHHHHHHcCCcEEEEecc--cccccCCCccHHHHH
Q 025344 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 222 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~ 222 (254)
.+...++|||+ .|++- |+=+..||...+.+-
T Consensus 240 N~laAv~aGa~--~vd~ti~GlGERaGNa~Le~vv 272 (423)
T 3ivs_A 240 NAYCALEAGAT--HIDTSILGIGERNGITPLGALL 272 (423)
T ss_dssp HHHHHHHTTCC--EEEEBGGGCSSTTCBCBHHHHH
T ss_pred HHHHHHHhCCC--EEEEecccccCcccchhHHHHH
Confidence 88889999999 56665 998999998877654
|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.27 Score=42.02 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCCEEEe
Q 025344 103 FKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEI 120 (254)
+++.++.++++||++||+
T Consensus 17 ~~~~l~~~~~~G~~~vEl 34 (286)
T 3dx5_A 17 FTDIVQFAYENGFEGIEL 34 (286)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 444444445555555554
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=1.3 Score=39.68 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=80.4
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
.+-.....+| ++.++= .++ +.+.+.+++.++.++++ +.++--+.+....+ .+..++++++.+.+.|.+.|.+
T Consensus 30 ~la~av~~aG-glG~i~--~~~--~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~--~~~~~~~~~~~~~~~g~d~V~~ 102 (328)
T 2gjl_A 30 EMAAAVANAG-GLATLS--ALT--QPSPEALAAEIARCRELTDRPFGVNLTLLPTQ--KPVPYAEYRAAIIEAGIRVVET 102 (328)
T ss_dssp HHHHHHHHTT-SBCEEE--TTT--SSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS--SCCCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCC-CeEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCeEEEEeccccc--cCccHHHHHHHHHhcCCCEEEE
Confidence 4445555566 566662 222 33355677777777653 21111111110000 0236899999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
+-|. | .++++.+++.|.++..- + . + .+.++...++|||
T Consensus 103 ~~g~---p----~~~~~~l~~~gi~vi~~--v---~--------------------------t----~~~a~~~~~~GaD 140 (328)
T 2gjl_A 103 AGND---P----GEHIAEFRRHGVKVIHK--C---T--------------------------A----VRHALKAERLGVD 140 (328)
T ss_dssp EESC---C----HHHHHHHHHTTCEEEEE--E---S--------------------------S----HHHHHHHHHTTCS
T ss_pred cCCC---c----HHHHHHHHHcCCCEEee--C---C--------------------------C----HHHHHHHHHcCCC
Confidence 8763 3 36778888888776621 1 0 1 3456678899999
Q ss_pred EEEEeccc---ccccCCCccHHHHHHHHhcc
Q 025344 201 MIMIDSDD---VCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 201 ~ViiEarg---i~d~~g~~r~d~i~~ii~~l 228 (254)
.|++++.+ -.........+++.++.+.+
T Consensus 141 ~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~ 171 (328)
T 2gjl_A 141 AVSIDGFECAGHPGEDDIPGLVLLPAAANRL 171 (328)
T ss_dssp EEEEECTTCSBCCCSSCCCHHHHHHHHHTTC
T ss_pred EEEEECCCCCcCCCCccccHHHHHHHHHHhc
Confidence 99998752 11111123456777776554
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.93 Score=38.76 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++.++.++++||+.||+..... .++..++.+.+++.|+++.+ +..-... .+.+ .|+. ...
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~~~gl~v~~-~~~~~~~-~l~~-~d~~------------~r~ 100 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGGL---AGRVNEIKQALNGRNIKVSA-ICAGFKG-FILS-TDPA------------IRK 100 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTTC---GGGHHHHHHHHTTSSCEECE-EECCCCS-CTTB-SSHH------------HHH
T ss_pred CHHHHHHHHHHcCCCEEEecCCch---HHHHHHHHHHHHHcCCeEEE-EecCCCC-cCCC-CCHH------------HHH
Confidence 689999999999999999998743 45677888888999999754 2221110 1111 1111 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccH-------HHHHH---HHhccCCCceEEe--cC-------Cch
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA-------DIIAK---VIGRLGLEKTMFE--AT-------NPR 241 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~-------d~i~~---ii~~l~~~klifE--AP-------~k~ 241 (254)
...+.+.+.++..-+.||..|++-+- +-++..-..+. +.+.+ +++..|+ +|.+| .+ ...
T Consensus 101 ~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~~~~ 179 (287)
T 3kws_A 101 ECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGT-SVIFEPLNRKECFYLRQVA 179 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTC-CEEECCCCTTTCSSCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCcccCcccCCHH
Confidence 12455566666667789999998542 22221000111 12222 3344455 68888 32 345
Q ss_pred hHHHHHHHhC
Q 025344 242 TSEWFIRRYG 251 (254)
Q Consensus 242 qQ~~~I~~~G 251 (254)
+-..++++.|
T Consensus 180 ~~~~ll~~v~ 189 (287)
T 3kws_A 180 DAASLCRDIN 189 (287)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 6678888887
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.16 Score=46.29 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~ 139 (254)
..+.|.++-.++. +|++++..|++--+. .+...++.+.+.+.|.++|+||+|+.. .+.....++++.+
T Consensus 195 r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~--~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~i 272 (338)
T 1z41_A 195 RFLREIIDEVKQVWDGPLFVRVSASDYTDKGLD--IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKI 272 (338)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCC--HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCcccCCCCCC--HHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHH
Confidence 3456666666553 335556444331000 113456777888899999999999753 2222335667777
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCCCccH
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSLRA 218 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~~r~ 218 (254)
++. +++. .--.| .+. | .+.+++.|++| ||.|++ +|.+..+ +
T Consensus 273 r~~-------~~iP--Vi~~G--------gi~-----------s----~~~a~~~l~~G~aD~V~i-GR~~i~n-----P 314 (338)
T 1z41_A 273 REQ-------ADMA--TGAVG--------MIT-----------D----GSMAEEILQNGRADLIFI-GRELLRD-----P 314 (338)
T ss_dssp HHH-------HCCE--EEECS--------SCC-----------S----HHHHHHHHHTTSCSEEEE-CHHHHHC-----T
T ss_pred HHH-------CCCC--EEEEC--------CCC-----------C----HHHHHHHHHcCCceEEee-cHHHHhC-----c
Confidence 662 2221 10011 111 2 56777889999 999988 5655432 5
Q ss_pred HHHHHHHhccC
Q 025344 219 DIIAKVIGRLG 229 (254)
Q Consensus 219 d~i~~ii~~l~ 229 (254)
+++.++.+.++
T Consensus 315 dl~~ki~~~~~ 325 (338)
T 1z41_A 315 FFARTAAKQLN 325 (338)
T ss_dssp THHHHHHHHTT
T ss_pred hHHHHHHcCCC
Confidence 67888887776
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.29 E-value=2 Score=38.87 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+-.+.+-+.|..+|-|=|+.. -+|.++.++-|+.+++.+- -+.|-++- ..|.
T Consensus 101 ~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~--~~~~~i~a-------Rtda--------- 162 (287)
T 3b8i_A 101 RTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV--DPALTIIA-------RTNA--------- 162 (287)
T ss_dssp HHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC--STTSEEEE-------EEET---------
T ss_pred HHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC--CCCcEEEE-------echh---------
Confidence 334444458999999999874 3788889999999999864 23333320 0111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEA 237 (254)
.....++.|++++...+||||.|.+|+- ...+++.+|.+.++.--+|.|-
T Consensus 163 -----a~~gl~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~ii~~~ 212 (287)
T 3b8i_A 163 -----ELIDVDAVIQRTLAYQEAGADGICLVGV--------RDFAHLEAIAEHLHIPLMLVTY 212 (287)
T ss_dssp -----TTSCHHHHHHHHHHHHHTTCSEEEEECC--------CSHHHHHHHHTTCCSCEEEECT
T ss_pred -----hhcCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHHHHHhCCCCEEEeCC
Confidence 1124789999999999999999999963 2367889999888744447663
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.26 E-value=0.53 Score=39.06 Aligned_cols=124 Identities=10% Similarity=0.119 Sum_probs=71.3
Q ss_pred hhH-HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 40 HNV-LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 40 ~~~-~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.++ ++.+.+.-+ |++=+.. +-..+.+++-++.++++|+.+...- -++....+.++.+.+.|.+.|
T Consensus 66 ~~~~~~~~~~~Ga---d~v~v~~----~~~~~~~~~~~~~~~~~g~~~~v~~-------~~~~t~~~~~~~~~~~g~d~i 131 (211)
T 3f4w_A 66 GHFESQLLFDAGA---DYVTVLG----VTDVLTIQSCIRAAKEAGKQVVVDM-------ICVDDLPARVRLLEEAGADML 131 (211)
T ss_dssp HHHHHHHHHHTTC---SEEEEET----TSCHHHHHHHHHHHHHHTCEEEEEC-------TTCSSHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHhcCC---CEEEEeC----CCChhHHHHHHHHHHHcCCeEEEEe-------cCCCCHHHHHHHHHHcCCCEE
Confidence 344 555555444 4444432 2234558888999999998654210 011234456677788899998
Q ss_pred EecCCccc--CChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHH
Q 025344 119 ELNVGSLE--IPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (254)
Q Consensus 119 EISdGti~--i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~d 194 (254)
=++.|+-. .+.. -.+.++++++. ...+....|+. .+.++..
T Consensus 132 ~v~~g~~g~~~~~~-~~~~i~~l~~~~~~~~i~~~gGI~----------------------------------~~~~~~~ 176 (211)
T 3f4w_A 132 AVHTGTDQQAAGRK-PIDDLITMLKVRRKARIAVAGGIS----------------------------------SQTVKDY 176 (211)
T ss_dssp EEECCHHHHHTTCC-SHHHHHHHHHHCSSCEEEEESSCC----------------------------------TTTHHHH
T ss_pred EEcCCCcccccCCC-CHHHHHHHHHHcCCCcEEEECCCC----------------------------------HHHHHHH
Confidence 88766421 1111 13455566553 34555555552 1234556
Q ss_pred HHcCCcEEEEecccccccC
Q 025344 195 LEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 195 LeAGA~~ViiEargi~d~~ 213 (254)
+++||+.|++= +.++++.
T Consensus 177 ~~~Gad~vvvG-sai~~~~ 194 (211)
T 3f4w_A 177 ALLGPDVVIVG-SAITHAA 194 (211)
T ss_dssp HTTCCSEEEEC-HHHHTCS
T ss_pred HHcCCCEEEEC-HHHcCCC
Confidence 88999999884 5677654
|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.62 Score=40.54 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.+++ ++.++++||+.||+.... ...+..+..++.+.+++.|+++.+ ..--.....+.+ .|+. ..
T Consensus 38 ~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~~l~~-~d~~------------~r 102 (309)
T 2hk0_A 38 FGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTA-GIGPSKTKNLSS-EDAA------------VR 102 (309)
T ss_dssp SHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEE-ECCCCSSSCSSC-SCHH------------HH
T ss_pred cHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEE-ecCCCCCCCCCC-CCHH------------HH
Confidence 7889 999999999999998542 233446777889999999999887 321000001111 1110 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHH-------HHH---HHHhccCCCceEEecC---------
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRAD-------IIA---KVIGRLGLEKTMFEAT--------- 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d-------~i~---~ii~~l~~~klifEAP--------- 238 (254)
....+.+.+.++..-+.||..|++-. .|.+.....-+.+ .+. ++++..|+ +|.+|.-
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~ 181 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGI-NLCIEVLNRFENHVLN 181 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCTTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCC-EEEEeecccccccccC
Confidence 11245566666667778999998542 1332111101121 222 22333454 5888864
Q ss_pred CchhHHHHHHHhCC
Q 025344 239 NPRTSEWFIRRYGP 252 (254)
Q Consensus 239 ~k~qQ~~~I~~~Gp 252 (254)
...+-..++++.|+
T Consensus 182 ~~~~~~~l~~~v~~ 195 (309)
T 2hk0_A 182 TAAEGVAFVKDVGK 195 (309)
T ss_dssp SHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 34556678888873
|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.34 Score=41.50 Aligned_cols=125 Identities=11% Similarity=0.177 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++.++.++++||+.||+. +.. + +..++-+.+++.|+++.+- ..... +.|.. ..
T Consensus 32 ~~~~~l~~~~~~G~~~vEl~-~~~--~--~~~~~~~~l~~~gl~~~~~-~~~~~---------------~~~~~----~~ 86 (301)
T 3cny_A 32 NLQQLLSDIVVAGFQGTEVG-GFF--P--GPEKLNYELKLRNLEIAGQ-WFSSY---------------IIRDG----IE 86 (301)
T ss_dssp CHHHHHHHHHHHTCCEECCC-TTC--C--CHHHHHHHHHHTTCEECEE-EEEEC---------------HHHHH----HH
T ss_pred CHHHHHHHHHHhCCCEEEec-CCC--C--CHHHHHHHHHHCCCeEEEE-eccCC---------------CChhh----HH
Confidence 68999999999999999999 333 3 5667888899999998764 22110 00100 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-----ccccc--C--CCc-cHHH----------HHHHHhccCCCceEEecC---
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD-----DVCKH--A--DSL-RADI----------IAKVIGRLGLEKTMFEAT--- 238 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~--~--g~~-r~d~----------i~~ii~~l~~~klifEAP--- 238 (254)
...+.+.+.++..-+.||..|++=+- |.+.. . ... +.+. +.++++..|+ +|.+|.-
T Consensus 87 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~ 165 (301)
T 3cny_A 87 KASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGL-KVAYHHHMGT 165 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCc
Confidence 13556667777777899999988642 33211 0 111 2222 2223334454 5888853
Q ss_pred ---CchhHHHHHHHhCC
Q 025344 239 ---NPRTSEWFIRRYGP 252 (254)
Q Consensus 239 ---~k~qQ~~~I~~~Gp 252 (254)
.+.+-..++++.++
T Consensus 166 ~~~~~~~~~~l~~~~~~ 182 (301)
T 3cny_A 166 GIQTKEETDRLMANTDP 182 (301)
T ss_dssp SSCSHHHHHHHHHTSCT
T ss_pred ccCCHHHHHHHHHhCCc
Confidence 45566778888774
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=2.8 Score=37.89 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--c------cC----------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCCC
Q 025344 103 FKEYVEDCKQVGFDTIELNVGS--L------EI----------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt--i------~i----------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v~ 160 (254)
+-+-.+.+++.|||.|||.-+. + +. +.+.| +++|+.+++.= -.-+++|...
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v---~~pv~vris~---- 218 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSA---- 218 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEEC----
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc---CCcEEEEecC----
Confidence 4444556678999999997653 1 11 12334 45666666641 1236665322
Q ss_pred CccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc---CC-CccHHHHHHHHhcc
Q 025344 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH---AD-SLRADIIAKVIGRL 228 (254)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~---~g-~~r~d~i~~ii~~l 228 (254)
..|.. +-.+.++.++.++..-++|+++|-+=++..... .+ .+..+.+.+|-+.+
T Consensus 219 -------------~~~~~-~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 276 (338)
T 1z41_A 219 -------------SDYTD-KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA 276 (338)
T ss_dssp -------------CCCST-TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH
T ss_pred -------------cccCC-CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC
Confidence 11111 112577889999999999999999865432211 12 13445566665544
|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=91.14 E-value=1.1 Score=39.49 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCEEEecCCccc-CC----hhHHHHHHHHHHHcCCc---ccceeeeecCCCCCCCccccccccccccCCC
Q 025344 105 EYVEDCKQVGFDTIELNVGSLE-IP----EETLLRYVRLVKSAGLK---AKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~-i~----~~~r~~lI~~~~~~G~~---v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.++.++++||+.||++..... .+ ..+..++-+.++++|++ +.+-.+... ...+.+ .|++
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~~~~~~~-~~~l~~-~d~~---------- 102 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKISTNVGATR-TFDPSS-NYPE---------- 102 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCS-SSCTTC-SSHH----------
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEEEeccCC-CCCCCC-CCHH----------
Confidence 8999999999999999865432 22 36777888899999999 665222210 011111 1110
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
......+.+.+.++..-+.||..|+..
T Consensus 103 --~r~~~~~~~~~~i~~A~~lG~~~v~~~ 129 (335)
T 2qw5_A 103 --QRQEALEYLKSRVDITAALGGEIMMGP 129 (335)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCEEecc
Confidence 001124556666666667899999654
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.75 Score=41.59 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=54.8
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.+. |.++|-|-||. ...+.|+.+.+.|.+|.-.+|.+-. + + ..++.+... .......+++|+
T Consensus 116 ~ka-Ga~aVklEdg~------~~~~~i~~l~~~GIpv~gHlgltPq-~-~-----~~~gg~~vq----grt~~~a~~~i~ 177 (275)
T 3vav_A 116 MRA-GAQMVKFEGGE------WLAETVRFLVERAVPVCAHVGLTPQ-S-V-----HAFGGFKVQ----GKTEAGAAQLLR 177 (275)
T ss_dssp HHT-TCSEEEEECCG------GGHHHHHHHHHTTCCEEEEEESCGG-G-H-----HHHC---CC----CCSHHHHHHHHH
T ss_pred HHc-CCCEEEECCch------hHHHHHHHHHHCCCCEEEecCCCce-E-E-----eccCCeEEE----cCCHHHHHHHHH
Confidence 344 99999999994 4478899999999999988887421 0 0 000111100 000123689999
Q ss_pred HHHHHHHcCCcEEEEec
Q 025344 190 RAERCLEAGADMIMIDS 206 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEa 206 (254)
+++..-+|||+.|.+|+
T Consensus 178 rA~a~~eAGA~~ivlE~ 194 (275)
T 3vav_A 178 DARAVEEAGAQLIVLEA 194 (275)
T ss_dssp HHHHHHHHTCSEEEEES
T ss_pred HHHHHHHcCCCEEEecC
Confidence 99999999999999997
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=2.1 Score=37.75 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 025344 68 PKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~-gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
+.+.+.+.++-.++. ++++. ++ | ....+.++.+.+.+.|.+.|-+++.+
T Consensus 142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~-~-------~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 142 DFEATEKLLKEVFTFFTKPLGVKLPPY-F-------DLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCC-C-------SHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCC-C-------CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 556678888888876 55443 33 2 11146778889999999999999986
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.56 Score=39.69 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=71.6
Q ss_pred HHHHHHhhccc-ccEEeecCccc-ccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 43 LEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 43 ~~DlLe~ag~y-ID~lKfg~GT~-~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
+++.++.+.+. .|.+=+..... .-++.+.+++..++++++|+.++. +.+.. +..+.+++.++.|+++|.+.|=
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~~A~~lGa~~v~ 107 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM----KSEEEIDRAFDYAKRVGVKLIV 107 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE----CSHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc----CCHHHHHHHHHHHHHhCCCEEE
Confidence 45555555444 67777765421 113455688999999999998775 32211 2334789999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 025344 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
+.-| .+...++.+.+++.|.++.-|-.
T Consensus 108 ~~p~-----~~~l~~l~~~a~~~gv~l~lEn~ 134 (257)
T 3lmz_A 108 GVPN-----YELLPYVDKKVKEYDFHYAIHLH 134 (257)
T ss_dssp EEEC-----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred ecCC-----HHHHHHHHHHHHHcCCEEEEecC
Confidence 8654 57778999999999999877765
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=90.95 E-value=3.1 Score=37.16 Aligned_cols=130 Identities=11% Similarity=0.133 Sum_probs=87.6
Q ss_pred chhHHHHHHHhh-cccccEEeecCcccccC--ChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GT~~l~--~~~~l~eKi~l~~~-~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
.+.++.+.++.+ ..-+.-+-|..|....+ +.+.+.+.++..++ +++.++ +|. .-++.++.+++
T Consensus 92 s~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~-----------~~~e~l~~L~~ 160 (350)
T 3t7v_A 92 TMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGL-----------MDNATLLKARE 160 (350)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSS-----------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCC-----------CCHHHHHHHHH
Confidence 344444444433 23366777777764443 35567888888875 466444 231 34677888899
Q ss_pred cCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 113 VGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 113 lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
.|++.+-+|--+. ..+.+++.+.++.+++.|+++.+ +.-.+. . +
T Consensus 161 aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~--~~i~Gl------g------------------e 214 (350)
T 3t7v_A 161 KGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVED--GILTGV------G------------------N 214 (350)
T ss_dssp TTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE--EEEESS------S------------------C
T ss_pred cCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEcc--ceEeec------C------------------C
Confidence 9999988766554 36788999999999999997544 554332 1 1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 025344 183 DVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+.+++++.++.-.+.+.+.|-+=
T Consensus 215 t~e~~~~~l~~l~~l~~~~v~~~ 237 (350)
T 3t7v_A 215 DIESTILSLRGMSTNDPDMVRVM 237 (350)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEec
Confidence 47888888888889999977653
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.89 E-value=0.51 Score=42.84 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=65.8
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
-.+..++-|.++|-|-|| ++....|+.+.+.|..|.-.+|..-.. + ..++.+... .... ..+
T Consensus 118 a~rl~~eaGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPqs--v-----~~~ggf~v~----grt~-~a~ 179 (281)
T 1oy0_A 118 ATRFLKDGGAHAVKLEGG------ERVAEQIACLTAAGIPVMAHIGFTPQS--V-----NTLGGFRVQ----GRGD-AAE 179 (281)
T ss_dssp HHHHHHTTCCSEEEEEBS------GGGHHHHHHHHHHTCCEEEEEECCC-------------------------CH-HHH
T ss_pred HHHHHHHhCCeEEEECCc------HHHHHHHHHHHHCCCCEEeeecCCcce--e-----cccCCeEEE----eCcH-HHH
Confidence 355668899999999999 366788999999999888888874211 1 000111110 0001 368
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
++|+.++...+|||+.|.+|+- ..++.++|.++++
T Consensus 180 ~~i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~ 214 (281)
T 1oy0_A 180 QTIADAIAVAEAGAFAVVMEMV---------PAELATQITGKLT 214 (281)
T ss_dssp HHHHHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCcEEEEecC---------CHHHHHHHHHhCC
Confidence 9999999999999999999972 2456666666665
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.94 Score=37.99 Aligned_cols=48 Identities=4% Similarity=-0.081 Sum_probs=33.5
Q ss_pred HHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 025344 76 VKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (254)
Q Consensus 76 i~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (254)
++.++++ ||.+.|.|-.+....+-.+.++..+..+.+.||+.+-++..
T Consensus 93 i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~ 141 (208)
T 2czd_A 93 VMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT 141 (208)
T ss_dssp HHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS
T ss_pred HHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCC
Confidence 5566666 99888876333221100238999999999999999988865
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.97 Score=40.85 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 107 VEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
++.+.+.|.+.|-|...+-++ +. +.-.+.|+.+++.|++|-..+..- ++...+
T Consensus 87 i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~-----~~~~~~---------- 151 (307)
T 1ydo_A 87 LENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTV-----FGCPYE---------- 151 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECT-----TCBTTT----------
T ss_pred HHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-----ecCCcC----------
Confidence 677777899999997644332 22 334678999999999874332221 110111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..|++.+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 152 -----~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 195 (307)
T 1ydo_A 152 -----KDVPIEQVIRLSEALFEFGISELS-----LGDTIGAANPAQVETVLEAL 195 (307)
T ss_dssp -----BCCCHHHHHHHHHHHHHHTCSCEE-----EECSSCCCCHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 122689999999999999999664 57888888888888877654
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.93 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=61.8
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
-|.++|-|-|| ++....|+.+.+.|..|.-.+|..-.. + ..++.+.. .... ...+++|++++
T Consensus 107 aGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPQs--~-----~~~ggf~v----~grt-~~a~~~i~rA~ 168 (275)
T 1o66_A 107 AGAHMVKLEGG------VWMAETTEFLQMRGIPVCAHIGLTPQS--V-----FAFGGYKV----QGRG-GKAQALLNDAK 168 (275)
T ss_dssp TTCSEEEEECS------GGGHHHHHHHHHTTCCEEEEEESCGGG--T-----TC----------------CHHHHHHHHH
T ss_pred cCCcEEEECCc------HHHHHHHHHHHHcCCCeEeeeccCcee--e-----cccCCeEE----EeCh-HHHHHHHHHHH
Confidence 89999999999 366788999999999998888864211 1 00011110 0001 23689999999
Q ss_pred HHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 193 ~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
...+|||+.|.+|+- ..++.++|.++++
T Consensus 169 a~~eAGA~~ivlE~v---------p~~~a~~it~~l~ 196 (275)
T 1o66_A 169 AHDDAGAAVVLMECV---------LAELAKKVTETVS 196 (275)
T ss_dssp HHHHTTCSEEEEESC---------CHHHHHHHHHHCS
T ss_pred HHHHcCCcEEEEecC---------CHHHHHHHHHhCC
Confidence 999999999999982 2355666666665
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=1.3 Score=43.55 Aligned_cols=146 Identities=10% Similarity=0.112 Sum_probs=99.2
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCcee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (254)
...=+|.+-+-..++-+ +.+++-|+.++++|..+ +... |......++.+-+..+.+.++|.+.|=|.|-.--+
T Consensus 127 ~~aGvd~vrIf~s~sd~---~ni~~~i~~ak~~G~~v~~~i~~--~~~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~ 201 (539)
T 1rqb_A 127 AENGMDVFRVFDAMNDP---RNMAHAMAAVKKAGKHAQGTICY--TISPVHTVEGYVKLAGQLLDMGADSIALKDMAALL 201 (539)
T ss_dssp HHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEEC--CCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCC
T ss_pred HhCCCCEEEEEEehhHH---HHHHHHHHHHHHCCCeEEEEEEe--eeCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCc
Confidence 33448888887766665 45999999999999966 2110 00112233456666777788999999999988888
Q ss_pred ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 128 PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 128 ~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+.+-.++|+.++++ +.....+++- +-.|...-+-.+...++|||+.| ++-
T Consensus 202 ~P~~v~~lv~~l~~~-~p~~i~I~~H--------------------------~Hnd~GlAvAN~laAveAGa~~V--D~t 252 (539)
T 1rqb_A 202 KPQPAYDIIKAIKDT-YGQKTQINLH--------------------------CHSTTGVTEVSLMKAIEAGVDVV--DTA 252 (539)
T ss_dssp CHHHHHHHHHHHHHH-HCTTCCEEEE--------------------------EBCTTSCHHHHHHHHHHTTCSEE--EEB
T ss_pred CHHHHHHHHHHHHHh-cCCCceEEEE--------------------------eCCCCChHHHHHHHHHHhCCCEE--EEe
Confidence 888888999999884 1001123331 11123334778888999999955 664
Q ss_pred --cccccCCCccHHHHHHHHhccC
Q 025344 208 --DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 208 --gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|+=...||...+.+-..+...|
T Consensus 253 i~g~GertGN~~lE~lv~~L~~~g 276 (539)
T 1rqb_A 253 ISSMSLGPGHNPTESVAEMLEGTG 276 (539)
T ss_dssp CGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred ccccCCCccChhHHHHHHHHHhcC
Confidence 7777789998887776666554
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.84 Score=42.53 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=97.7
Q ss_pred ccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
+|.+-+-..+|-++.+ +.+.+-++.++++|..|..+ .|.+...+++.+-+.++.+.+.|.+.|-|.|
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~--~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~D 178 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFS--CEDALRSEIDFLAEICGAVIEAGATTINIPD 178 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEE--EETGGGSCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEe--cCCCCccCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5666665555554321 23455788999999876544 2333344555677888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.+++. +.. ...+++- +-.|...-+-.+...++|||+
T Consensus 179 T~G~~~P~~~~~lv~~l~~~-~~~~~~~~l~~H--------------------------~Hnd~GlAvAN~laAv~aGa~ 231 (370)
T 3rmj_A 179 TVGYSIPYKTEEFFRELIAK-TPNGGKVVWSAH--------------------------CHNDLGLAVANSLAALKGGAR 231 (370)
T ss_dssp SSSCCCHHHHHHHHHHHHHH-STTGGGSEEEEE--------------------------CBCTTSCHHHHHHHHHHTTCC
T ss_pred ccCCcCHHHHHHHHHHHHHh-CCCcCceEEEEE--------------------------eCCCCChHHHHHHHHHHhCCC
Confidence 99888888888999999884 110 0123331 122334447788889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHH
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVI 225 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii 225 (254)
.| ++- |+=...||...+.+-..+
T Consensus 232 ~v--d~tv~GlGeraGN~~lE~vv~~L 256 (370)
T 3rmj_A 232 QV--ECTVNGLGERAGNASVEEIVMAL 256 (370)
T ss_dssp EE--EEBGGGCSSTTCBCBHHHHHHHH
T ss_pred EE--EEeccccCcccccccHHHHHHHH
Confidence 64 664 888899999988766554
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.25 Score=41.78 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
.+++.++.++++||+.||+...... ++..+..++.+.+++.|+++.+ ++.-. .+.+ .|+.
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~---~~~~-~~~~------------- 78 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLAN-LGLPL---NLYD-SEPV------------- 78 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECC-EECCS---CTTS-CHHH-------------
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEE-ecccc---cccC-CCHH-------------
Confidence 6889999999999999999865431 2345567888889999998754 33211 1110 1111
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
....++.+.+.++..-+.||..|.+
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~ 103 (281)
T 3u0h_A 79 FLRELSLLPDRARLCARLGARSVTA 103 (281)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0112445556666667789999985
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=90.25 E-value=1.3 Score=40.50 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
..++++.|.+.|.+.|-|.+-.-++ +.-.++|+.+++.|+.| ++...+.. ..
T Consensus 95 ~~~~i~~a~~aGvd~v~I~~~~s~~--~~~~~~i~~ak~~G~~v--~~~~~~a~------------------------~~ 146 (345)
T 1nvm_A 95 SVHDLKNAYQAGARVVRVATHCTEA--DVSKQHIEYARNLGMDT--VGFLMMSH------------------------MI 146 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEEEETTCG--GGGHHHHHHHHHHTCEE--EEEEESTT------------------------SS
T ss_pred cHHHHHHHHhCCcCEEEEEEeccHH--HHHHHHHHHHHHCCCEE--EEEEEeCC------------------------CC
Confidence 4678999999999999997422111 45568999999999875 44542110 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+.+.++...++||+.|- ++|..|...+..+.++++.+
T Consensus 147 ~~e~~~~ia~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (345)
T 1nvm_A 147 PAEKLAEQGKLMESYGATCIY-----MADSGGAMSMNDIRDRMRAF 187 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEE-----EECTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEE-----ECCCcCccCHHHHHHHHHHH
Confidence 588899999999999999764 57777877777777776543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.12 E-value=2.1 Score=38.02 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+. | ..|+ .|+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv----------------------- 77 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPII--AGT----------------------- 77 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-----------------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC-----------------------
Confidence 577888888999999996544333 78999999999999883 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 78 ----g~~~t~~ai~la~~a~~~Gadavlv~~ 104 (291)
T 3tak_A 78 ----GANSTREAIELTKAAKDLGADAALLVT 104 (291)
T ss_dssp ----CCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 112478889999999999999999876
|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.92 Score=38.96 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee--ecC--CCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV--MFN--KSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~--k~~--~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+++.++.++++||+.||+..... ...+..++-+.+++.|+++.+ ++. .++ ...+.+ .|+.
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~~l~~~gl~~~~-~~~~~p~~~~~~~l~~-~d~~----------- 106 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDP--SIVDWNEVKILSEELNLPICA-IGTGQAYLADGLSLTH-PNDE----------- 106 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCG--GGSCHHHHHHHHHHHTCCEEE-EECTHHHHTTCCCTTC-SSHH-----------
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCc--chhhHHHHHHHHHHcCCeEEE-EeccCccccCCCCCCC-CCHH-----------
Confidence 688999999999999999986532 235566888889999999754 222 100 001110 1110
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHH-------HHHHHhccCCCceEEecC---------Cch
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IAKVIGRLGLEKTMFEAT---------NPR 241 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~-------i~~ii~~l~~~klifEAP---------~k~ 241 (254)
......+.+.+.++..-+.||..|+.-..|.+. +.-+.+. +.++.+...-=+|.+|.- ...
T Consensus 107 -~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~--~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~ 183 (290)
T 2zvr_A 107 -IRKKAIERVVKHTEVAGMFGALVIIGLVRGRRE--GRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTID 183 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCT--TSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCC--CcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHH
Confidence 001124556666666677899998832124321 2222222 223322111146888863 455
Q ss_pred hHHHHHHHhCC
Q 025344 242 TSEWFIRRYGP 252 (254)
Q Consensus 242 qQ~~~I~~~Gp 252 (254)
+-..++++.|+
T Consensus 184 ~~~~l~~~~~~ 194 (290)
T 2zvr_A 184 DALRILRKINS 194 (290)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHcCC
Confidence 66678888873
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.3 Score=39.81 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=86.7
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhC-CchHHHHHHHHHHcCCCEEEec
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG-PSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg-~~~~~~yl~~~k~lGF~~IEIS 121 (254)
+-+.|..+| +|.+=.||..+.=-+.+.+++..+.. -++.+.. +.++ +..++..++.++..|.+.|-|.
T Consensus 32 i~~~L~~~G--v~~IE~g~p~~~~~d~e~v~~i~~~~--~~~~i~~-------l~~~~~~di~~a~~~~~~ag~~~v~i~ 100 (293)
T 3ewb_X 32 IALQLEKLG--IDVIEAGFPISSPGDFECVKAIAKAI--KHCSVTG-------LARCVEGDIDRAEEALKDAVSPQIHIF 100 (293)
T ss_dssp HHHHHHHHT--CSEEEEECGGGCHHHHHHHHHHHHHC--CSSEEEE-------EEESSHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HHHHHHHcC--CCEEEEeCCCCCccHHHHHHHHHHhc--CCCEEEE-------EecCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 344455566 77778888654322223344433322 2343321 1111 1146666776777899988876
Q ss_pred CCccc--------CChh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLE--------IPEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~--------i~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-+ .+.+ .-.+.|+.+++.|+.|. |+..+. +..|++.+++
T Consensus 101 ~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~--~~~~d~------------------------~~~~~~~~~~ 154 (293)
T 3ewb_X 101 LATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQ--FSPEDA------------------------TRSDRAFLIE 154 (293)
T ss_dssp EECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETG------------------------GGSCHHHHHH
T ss_pred ecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEE--EEeccC------------------------CCCCHHHHHH
Confidence 54432 2222 34577888999887753 444211 1125899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~ 227 (254)
.+++..++||+.| .|+|..|-..+..+.++++.
T Consensus 155 ~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~ 187 (293)
T 3ewb_X 155 AVQTAIDAGATVI-----NIPDTVGYTNPTEFGQLFQD 187 (293)
T ss_dssp HHHHHHHTTCCEE-----EEECSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHHH
Confidence 9999999999976 47888888888877777643
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=89.93 E-value=1.2 Score=40.34 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCC
Q 025344 104 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v 159 (254)
++.++.+|++|+++|-+ +.|..+ .+.-++++++++++||+|+-.|...+...++
T Consensus 30 ~~~~~ilk~~G~n~vRlri~v~P~~g~~d--~~~~~~~~~~ak~~Gl~v~ld~hysd~wadP 89 (334)
T 1fob_A 30 QALETILADAGINSIRQRVWVNPSDGSYD--LDYNLELAKRVKAAGMSLYLDLHLSDTWADP 89 (334)
T ss_dssp CCHHHHHHHHTCCEEEEEECSCCTTCTTC--HHHHHHHHHHHHHTTCEEEEEECCSSSCCBT
T ss_pred chHHHHHHHcCCCEEEEEEEECCCCCccC--HHHHHHHHHHHHHCCCEEEEEeccCCCCCCc
Confidence 45688899999999999 355433 5677789999999999999998875433333
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.93 E-value=1.7 Score=38.86 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-= ++.-=+|+
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv------------------------- 79 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGV------------------------- 79 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------------------------
Confidence 57888899999999999886543 57999999999999998411 11111222
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhcc---CCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRL---GLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l---~~~klifEAP 238 (254)
+..+..+.|++++..-++|||-|++=.--.+. ..-+---+-..+|++.. ++-=++.--|
T Consensus 80 --g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P 142 (294)
T 3b4u_A 80 --LVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIP 142 (294)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECH
T ss_pred --CCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 11247888999999999999999997653333 11111112234566666 5555666665
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.78 E-value=1.8 Score=38.48 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ +|+ | .
T Consensus 20 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gvi--~Gv-------g--~--------------- 73 (286)
T 2r91_A 20 LFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARRVI--VQV-------A--S--------------- 73 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSSEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCEE--Eee-------C--C---------------
Confidence 57888899999999999886543 47999999999999988411111 222 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.+..+.|++++..-++|||.|++=.--.+. ..-+---+-..+|++..++-=++.--|
T Consensus 74 ---~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 74 ---LNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp ---SSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 147888999999999999999997653332 111111222345666666655666655
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=1.4 Score=40.47 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc--c------c----------CChhHHHH----HHHHHHHcCCcccce--eeeecCCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS--L------E----------IPEETLLR----YVRLVKSAGLKAKPK--FAVMFNKS 157 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt--i------~----------i~~~~r~~----lI~~~~~~G~~v~~E--~g~k~~~s 157 (254)
.|-+--+.|++.|||.|||.-+. + + =+.+.|.| +|+.+++. +-++ +++|
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~a---vg~d~pV~vR---- 231 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREV---WPENLPLTAR---- 231 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTT---SCTTSCEEEE----
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHH---cCCCceEEEE----
Confidence 34444456778899999997542 1 0 12355644 55555552 1111 3443
Q ss_pred CCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 025344 158 DIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (254)
Q Consensus 158 ~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg 208 (254)
++|.+|...+..+.++.++.++..-++|+++|-+=+.+
T Consensus 232 -------------is~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~ 269 (363)
T 3l5l_A 232 -------------FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGF 269 (363)
T ss_dssp -------------EEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred -------------ecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 33333322222367888999999999999999886543
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.67 E-value=2.6 Score=38.13 Aligned_cols=123 Identities=12% Similarity=0.094 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 44 ~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv----------------------- 98 (315)
T 3si9_A 44 AFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVV--AGA----------------------- 98 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEE--EeC-----------------------
Confidence 6788888999999999965443 3489999999999999873 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccc----CCCccHHHHHHHHh
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~i~~ii~ 226 (254)
+..+..+.|++++..-++|||-|++=.- -+|+. .-++..+.+.++.+
T Consensus 99 ----g~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 99 ----GSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence 1124788899999999999999998662 12542 33566777777775
Q ss_pred ccC-CCceEEecCCchhHHHHHHHhCCC
Q 025344 227 RLG-LEKTMFEATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 227 ~l~-~~klifEAP~k~qQ~~~I~~~Gp~ 253 (254)
+.| +-=+=.-..+-.+...++++.+++
T Consensus 175 ~~pnIvgiKdssgd~~~~~~l~~~~~~~ 202 (315)
T 3si9_A 175 DFKNIIGVKDATGKIERASEQREKCGKD 202 (315)
T ss_dssp HCTTEEEEEECSCCTHHHHHHHHHHCSS
T ss_pred hCCCEEEEEeCCCCHHHHHHHHHHcCCC
Confidence 454 111112234555666666666654
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=7.8 Score=35.43 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=108.4
Q ss_pred chhHHHHHHHhhccc--ccEEeecCcccccCChhHHHHHHHHHHh--CCceecC----CcHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQ--HDVYVST----GDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag~y--ID~lKfg~GT~~l~~~~~l~eKi~l~~~--~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.+..++.+++.|-+- ==+|-++-|+...++.+.+...+..+.+ ++|+|.. |.-+| .+..|
T Consensus 26 n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHLDHg~~~e------------~~~~a 93 (307)
T 3n9r_A 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFE------------SCEKA 93 (307)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEEEEEECSHH------------HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHH------------HHHHH
Confidence 345555666554321 1135555555555555666666665544 6787775 43333 34456
Q ss_pred HHcCCCEEEecCCcccCChh--HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc----ccccccCCCccccccCH
Q 025344 111 KQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF----GAYVARAPRSTEYVEDV 184 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~----~~~~~~~~~~~~~~~d~ 184 (254)
-+.||+.|=|.-...++.+- .=.++++.+...|.-|--|+|.=-+ ..|... +..+| ||
T Consensus 94 i~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG------~Ed~~~~~~~~~~yT----------~P 157 (307)
T 3n9r_A 94 VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMG------IEDNISVDEKDAVLV----------NP 157 (307)
T ss_dssp HHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCC------C----------CCSC----------CH
T ss_pred HHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeecc------ccCCcccccccccCC----------CH
Confidence 78999999996655544322 2237788899999999999998321 121100 01123 67
Q ss_pred HHHHHHHHHHHHcCCcEEEEe---ccccccc--CCCccHHHHHHHHhccCCCceEEecC--CchhHHHHHHHhCCC
Q 025344 185 DLLIRRAERCLEAGADMIMID---SDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT--NPRTSEWFIRRYGPK 253 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE---argi~d~--~g~~r~d~i~~ii~~l~~~klifEAP--~k~qQ~~~I~~~Gp~ 253 (254)
++..+.+++ -|.|.+=+= +-|.|.. +-.++.|.+++|-+..+.- |.+=-- -|+.-+..|+.||-+
T Consensus 158 eea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~P-LVlHGgS~vp~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 158 KEAEQFVKE---SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIP-LVLHGASAIPDNVRKSYLDAGGD 229 (307)
T ss_dssp HHHHHHHHH---HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSC-EEESSCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHH---HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCC-eEEeCCCCcchHHHHHHHHhcCc
Confidence 777776654 688876553 2389973 4578999999994322322 444432 355666677788754
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.59 E-value=1.3 Score=39.92 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- . .+-+-. -+|
T Consensus 30 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g---rvpVia---Gvg------------------ 84 (313)
T 3dz1_A 30 SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K---SMQVIV---GVS------------------ 84 (313)
T ss_dssp HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T---TSEEEE---ECC------------------
T ss_pred HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C---CCcEEE---ecC------------------
Confidence 67788888889999999554333 3699999999999998852 1 111110 011
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
..+..+.|++++..-++|||.|++=
T Consensus 85 --~~~t~~ai~la~~A~~~Gadavlv~ 109 (313)
T 3dz1_A 85 --APGFAAMRRLARLSMDAGAAGVMIA 109 (313)
T ss_dssp --CSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred --CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 1147888999999999999999994
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=2.7 Score=37.53 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+. |+ |
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia--Gv-------g-------------- 85 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA--GA-------G-------------- 85 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE--EC-------C--------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE--eC-------C--------------
Confidence 67888999999999999765433 479999999999999874 1 22222 22 1
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
..+..+.|++++..-++|||-|++=.-
T Consensus 86 ------~~~t~~ai~la~~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 86 ------SNATHEAVGLAKFAKEHGADGILSVAP 112 (301)
T ss_dssp ------CSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ------CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 114788899999999999999999763
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=2.2 Score=44.30 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=49.7
Q ss_pred hhHHHHHHHhh-cccccEEeecC-----------cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHH
Q 025344 40 HNVLEDIFESM-GQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKE 105 (254)
Q Consensus 40 ~~~~~DlLe~a-g~yID~lKfg~-----------GT~~l~~~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~ 105 (254)
+..+.++.+.+ ....|++=+-+ |.+.....+.+.+.++-.+++ ++++.. .. .+...+.+
T Consensus 647 ~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-------~~~~~~~~ 719 (1025)
T 1gte_A 647 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-------PNVTDIVS 719 (1025)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-------SCSSCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-------CChHHHHH
Confidence 34455554444 23466665544 455556778899999999887 655442 11 01124677
Q ss_pred HHHHHHHcCCCEEEecCCc
Q 025344 106 YVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGt 124 (254)
+.+.+.+.|.++|-+||.+
T Consensus 720 ~a~~~~~~G~d~i~v~Nt~ 738 (1025)
T 1gte_A 720 IARAAKEGGADGVTATNTV 738 (1025)
T ss_dssp HHHHHHHHTCSEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeccc
Confidence 7888899999999998754
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.32 E-value=1.9 Score=36.79 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
.+.|++.|.++|-|-+---.+|.++-.++++.+++.|+.++.+++-
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~ 120 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNN 120 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999999955544688888899999999999999998875
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=89.25 E-value=2.8 Score=37.85 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 45 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv----------------------- 99 (314)
T 3qze_A 45 SLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVI--AGT----------------------- 99 (314)
T ss_dssp HHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-----------------------
Confidence 67888899999999999775333 479999999999998873 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccc----CCCccHHHHHHHHh
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~i~~ii~ 226 (254)
+..+..+.|++++..-++|||-|++=.- -+|+. .-++..+.+.+++
T Consensus 100 ----g~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La- 174 (314)
T 3qze_A 100 ----GANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS- 174 (314)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH-
T ss_pred ----CCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh-
Confidence 1124788899999999999999999762 12543 2356667777776
Q ss_pred ccCCCceE--Eec-CCchhHHHHHHHhCCC
Q 025344 227 RLGLEKTM--FEA-TNPRTSEWFIRRYGPK 253 (254)
Q Consensus 227 ~l~~~kli--fEA-P~k~qQ~~~I~~~Gp~ 253 (254)
+.| +|+ =|+ ++-.+...++++.+++
T Consensus 175 ~~p--nIvgiKdssgd~~~~~~~~~~~~~~ 202 (314)
T 3qze_A 175 KVP--NIIGIKEATGDLQRAKEVIERVGKD 202 (314)
T ss_dssp TST--TEEEEEECSCCHHHHHHHHHHSCTT
T ss_pred cCC--CEEEEEcCCCCHHHHHHHHHHcCCC
Confidence 333 332 133 3445555566665554
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.19 E-value=2.7 Score=37.59 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.++++++-+-|.+.|=+. ||. .|+.++|.++++.+.+. | ..|+ +|+
T Consensus 26 ~l~~lv~~li~~Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv---------------------- 80 (300)
T 3eb2_A 26 VMGRLCDDLIQAGVHGLTPL-GSTGEFAYLGTAQREAVVRATIEAAQRRVPVV--AGV---------------------- 80 (300)
T ss_dssp HHHHHHHHHHHTTCSCBBTT-SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBE--EEE----------------------
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccccCccccCHHHHHHHHHHHHHHhCCCCcEE--EeC----------------------
Confidence 57788888888999999544 543 69999999999999883 1 1111 122
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||.|++=.
T Consensus 81 -----g~~~t~~ai~la~~a~~~Gadavlv~~ 107 (300)
T 3eb2_A 81 -----ASTSVADAVAQAKLYEKLGADGILAIL 107 (300)
T ss_dssp -----EESSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 112578889999999999999999965
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.15 E-value=1.5 Score=38.48 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc--cccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG--AYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~--~~~~~~~~~~ 178 (254)
.+++.++.++++||++||+....- .....+..++-+.+++.|+++.+ ++.......+ .++... ..+.+..
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~-~~~~~~~~~~---~~p~~~~~~~~~~~~--- 102 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIIS-SHVNPVDTSI---SDPFKAMIFKYSKEV--- 102 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEE-EECCCBCTTC---SSTTTTBCCSCCTTT---
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEE-Eecccccccc---cCcccccccccchhh---
Confidence 699999999999999999985211 02233456777888999999854 3321100000 011000 0000000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.....+.+-+.++..-+.||..|++-+
T Consensus 103 -~~~~~~~~~~~i~~A~~lG~~~v~~~~ 129 (303)
T 3l23_A 103 -TPKIMEYWKATAADHAKLGCKYLIQPM 129 (303)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEEECS
T ss_pred -HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 012245556666666778999999953
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=88.93 E-value=2.1 Score=38.73 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=62.6
Q ss_pred HHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 108 EDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.+-+.|..+|-|-||.. -+|.++.++-|+.+++.+- .+.|-++- ..|.. |
T Consensus 101 ~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~--~~~~~i~a-------Rtda~---------~ 162 (295)
T 1xg4_A 101 KSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKT--DPDFVIMA-------RTDAL---------A 162 (295)
T ss_dssp HHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCS--STTSEEEE-------EECCH---------H
T ss_pred HHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhcc--CCCcEEEE-------ecHHh---------h
Confidence 333457999999999962 3678888888888887642 22333320 11110 0
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
....++.|++++...+||||.|.+|+.- ..+++.+|.+.++
T Consensus 163 ----~~gl~~ai~ra~ay~eAGAd~i~~e~~~--------~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 163 ----VEGLDAAIERAQAYVEAGAEMLFPEAIT--------ELAMYRQFADAVQ 203 (295)
T ss_dssp ----HHCHHHHHHHHHHHHHTTCSEEEETTCC--------SHHHHHHHHHHHC
T ss_pred ----hcCHHHHHHHHHHHHHcCCCEEEEeCCC--------CHHHHHHHHHHcC
Confidence 2246899999999999999999999851 3566777776665
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=88.79 E-value=3.1 Score=37.32 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+. |+
T Consensus 37 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia--Gv----------------------- 91 (304)
T 3l21_A 37 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIA--GA----------------------- 91 (304)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE--EC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE--eC-----------------------
Confidence 68888999999999999775443 479999999999998883 1 11111 22
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.|++++..-++|||-|++=.-
T Consensus 92 ----g~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 92 ----GTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 1124788899999999999999999763
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=88.77 E-value=1.4 Score=40.38 Aligned_cols=104 Identities=20% Similarity=0.339 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRA 166 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~ 166 (254)
+.+.+..+.+.+.|||.|||+-|+ +.-..+.-.++|+.+++. ++ | +++|.. +|. +|.
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~---P-V~vKiR---~g~-~~~- 140 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRV---P-VTVKMR---LGL-EGK- 140 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSS---C-EEEEEE---SCB-TTC-
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCC---c-eEEEEe---cCc-Ccc-
Confidence 456667777888899999999652 233444556677777763 32 2 555422 110 110
Q ss_pred cccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc---cccc-----CCCccHHHHHHHHhcc
Q 025344 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD---VCKH-----ADSLRADIIAKVIGRL 228 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg---i~d~-----~g~~r~d~i~~ii~~l 228 (254)
.+.++.++.++...++|++.|+|-+|. -+.. ......+.+.++.+.+
T Consensus 141 ---------------~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~ 195 (350)
T 3b0p_A 141 ---------------ETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDF 195 (350)
T ss_dssp ---------------CCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHC
T ss_pred ---------------ccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhC
Confidence 135677888999999999999999872 1111 1124567777777665
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=88.76 E-value=1.4 Score=40.31 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=50.4
Q ss_pred CcccccCChhHHHHHHHHHHh-CCceecC----CcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCcccC-------
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQ-HDVYVST----GDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGSLEI------- 127 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~-~gV~v~~----Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGti~i------- 127 (254)
+|++.+-..+.+.+.++-.++ .+++|.. | |-+. .+ ....++.+.+.+.|.++|-|+.++-..
T Consensus 103 ~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g-~~~~----~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~ 177 (350)
T 3b0p_A 103 YGACLLLDLARVREILKAMGEAVRVPVTVKMRLG-LEGK----ETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKAN 177 (350)
T ss_dssp CGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC-BTTC----CCHHHHHHHHHHHHHTTCCEEEEECSCBC--------
T ss_pred cchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC-cCcc----ccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccc
Confidence 567777788889999988887 3665443 4 2221 10 135677889999999999999976421
Q ss_pred ---ChhHHHHHHHHHHHc
Q 025344 128 ---PEETLLRYVRLVKSA 142 (254)
Q Consensus 128 ---~~~~r~~lI~~~~~~ 142 (254)
+.-+ .++|+.+++.
T Consensus 178 ~~~~~~~-~~~i~~ik~~ 194 (350)
T 3b0p_A 178 REIPPLR-HDWVHRLKGD 194 (350)
T ss_dssp --CCCCC-HHHHHHHHHH
T ss_pred cCCCccc-HHHHHHHHHh
Confidence 1112 4677777773
|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
Probab=88.73 E-value=1 Score=37.65 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecC-CC--CCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KS--DIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s--~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++.++.++++||+.||+..- .. .+..++-+.+++.|+++.+ ++.-.. .. .-+...|+. .
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~-~~---~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~g~~~~~~~~~--------~--- 79 (260)
T 1k77_A 16 PFIERFAAARKAGFDAVEFLFP-YN---YSTLQIQKQLEQNHLTLAL-FNTAPGDINAGEWGLSALPG--------R--- 79 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TT---SCHHHHHHHHHHTTCEEEE-EECCCCCGGGTCSCSTTCTT--------C---
T ss_pred CHHHHHHHHHHhCCCEEEecCC-CC---CCHHHHHHHHHHcCCceEE-EecCCcccccccCCCCCChh--------H---
Confidence 6888899999999999999852 12 2355677888999999875 332100 00 000001110 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.....+.+.+.++..-+.||..|.+-+
T Consensus 80 -~~~~~~~~~~~i~~a~~lG~~~v~~~~ 106 (260)
T 1k77_A 80 -EHEAHADIDLALEYALALNCEQVHVMA 106 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECCC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 012355666666677778999998854
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=88.61 E-value=1.8 Score=39.41 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
+-+-.+.+.+.|..+|-|=|+.. -+|.++-++-|+.+++.-- -+.|-+. . .-|.
T Consensus 100 v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~--~~~~~I~---A----RTDa------ 164 (298)
T 3eoo_A 100 IARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDART--DETFVIM---A----RTDA------ 164 (298)
T ss_dssp HHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCS--STTSEEE---E----EECT------
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhcc--CCCeEEE---E----eehh------
Confidence 33445566678999999999874 3677777777776665310 1223331 0 1111
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
......++.|++++...+||||.|.+|+- -..+++.++.+.++
T Consensus 165 -------~~~~gldeai~Ra~ay~~AGAD~if~~~~--------~~~ee~~~~~~~~~ 207 (298)
T 3eoo_A 165 -------AAAEGIDAAIERAIAYVEAGADMIFPEAM--------KTLDDYRRFKEAVK 207 (298)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCSEEEECCC--------CSHHHHHHHHHHHC
T ss_pred -------hhhcCHHHHHHHHHhhHhcCCCEEEeCCC--------CCHHHHHHHHHHcC
Confidence 11235889999999999999999999984 14677778887775
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=88.58 E-value=1.8 Score=38.97 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv----------------------- 90 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLL--AGS----------------------- 90 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEE--Eec-----------------------
Confidence 57788888899999999776544 369999999999999884 1 1111 121
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+-|++++..-++|||.|++=.
T Consensus 91 ----g~~~t~~ai~la~~A~~~Gadavlv~~ 117 (307)
T 3s5o_A 91 ----GCESTQATVEMTVSMAQVGADAAMVVT 117 (307)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 112478889999999999999999843
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.87 Score=41.39 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 79 ~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.+||+..+.. .| .-++.++.++++|+++|-|. .|.-+ .+.-++++++|+++||+|+-.|+.
T Consensus 15 ~e~~g~~~~~~--------~G--~~~d~~~ilk~~G~N~VRi~~w~~P~~g~~~--~~~~~~~~~~A~~~GlkV~ld~Hy 82 (332)
T 1hjs_A 15 EERAGVSYKNT--------NG--NAQPLENILAANGVNTVRQRVWVNPADGNYN--LDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp HHHTTCCCBCT--------TS--CBCCHHHHHHHTTCCEEEEEECSSCTTCTTS--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHcCCEEECC--------CC--CcccHHHHHHHCCCCEEEEeeeeCCCCCcCC--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 56677766641 12 23456788899999999994 44333 466778999999999999999987
Q ss_pred ecCCCCC
Q 025344 153 MFNKSDI 159 (254)
Q Consensus 153 k~~~s~v 159 (254)
.+...++
T Consensus 83 sd~WadP 89 (332)
T 1hjs_A 83 SDTWADP 89 (332)
T ss_dssp SSSCCBT
T ss_pred CCCcCCc
Confidence 5444344
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=88.53 E-value=12 Score=34.11 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=104.4
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhccccc----EEeecCcccccCChh-----HHHHHHHHHHhC--CceecC--
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD----GLKFSGGSHSLMPKP-----FIEEVVKRAHQH--DVYVST-- 88 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID----~lKfg~GT~~l~~~~-----~l~eKi~l~~~~--gV~v~~-- 88 (254)
|..|++-++-+|. .+...+..++.+..|=+ .+-.+.|-+...-.+ .+.+..+++.++ .|..-.
T Consensus 62 ~~aGV~~ii~~g~----~~~~~~~~~~La~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEi 137 (325)
T 3ipw_A 62 ERNGLSHIIITSG----CLNDFKKAIEIINKYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEI 137 (325)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHGGGCSSEEEEEECCCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEE
T ss_pred HHcCCcEEEEccC----CHHHHHHHHHHHHHCCCcccceEEEEEEECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEee
Confidence 4569999999997 56789999999988865 777777766543221 567777777664 221111
Q ss_pred C-cHH-----HHHHHhCCchHHHHHHHHHH-cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCC
Q 025344 89 G-DWA-----EHLIRNGPSAFKEYVEDCKQ-VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (254)
Q Consensus 89 G-tl~-----E~a~~qg~~~~~~yl~~~k~-lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~ 161 (254)
| .+. -...++. .|.+.++.|++ ++...|==+-.. .+ ++++.+++.+.... -|+-...+ |
T Consensus 138 GLD~~~~~~~~~~~Q~~--~F~~ql~lA~e~~~lPviiH~r~A----~~---d~l~iL~~~~~~~~--~gViH~Fs--G- 203 (325)
T 3ipw_A 138 GLDYERLQFSDKETQLS--GYRTLSILHQKYPYLPFFFHCRKS----WS---DLCQLNKELGYNGC--KGVVHCFD--G- 203 (325)
T ss_dssp EEETTCCSSSCHHHHHH--HHHHTHHHHHHCTTCCEEEEEESC----HH---HHHHHHHHTTCTTS--CEEECSCC--C-
T ss_pred ecCCCcCCCCCHHHHHH--HHHHHHHHHHHhhCCeEEEEeCch----HH---HHHHHHHhcCCCCC--cEEEEECC--C-
Confidence 2 121 1233444 79999999999 999877444332 33 45555566543311 24432211 1
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.|+.|.+ +=+=+- ++. +.+.+ +++..+|++||+.|...|
T Consensus 204 ---------------------s----~e~a~~~l~lG~y-is~~G~-~~k-----~~~~~-~~v~~iPldrlLlETDaP 249 (325)
T 3ipw_A 204 ---------------------T----EEEMNQILNEGWD-IGVTGN-SLQ-----SIELL-NVMKQIPIERLHIETDCP 249 (325)
T ss_dssp ---------------------C----HHHHHHHHHTTCE-EEECSG-GGS-----SHHHH-HHHTTSCGGGEEECCCTT
T ss_pred ---------------------C----HHHHHHHHhcCcE-EeeCcc-ccC-----cHHHH-HHHHhCCcccEEEeCCCc
Confidence 1 6778888999944 433332 232 23334 588999999999997655
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=88.50 E-value=2.7 Score=37.96 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
+-.+.+-+.|..+|-|-|+.. -+|.++-.+-|+.+++.+-. +.|-++- ..|.. +
T Consensus 94 ~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~--~~~~i~a-------Rtda~----~ 160 (290)
T 2hjp_A 94 YVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARAD--RDFVVIA-------RVEAL----I 160 (290)
T ss_dssp HHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSS--TTSEEEE-------EECTT----T
T ss_pred HHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhccc--CCcEEEE-------eehHh----h
Confidence 334444458999999999873 36777777777777775322 3333320 11110 0
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
. ....++.|++++...+||||.|.+|++ -...+++.+|.+.++
T Consensus 161 a--------~~g~~~ai~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 161 A--------GLGQQEAVRRGQAYEEAGADAILIHSR-------QKTPDEILAFVKSWP 203 (290)
T ss_dssp T--------TCCHHHHHHHHHHHHHTTCSEEEECCC-------CSSSHHHHHHHHHCC
T ss_pred c--------cccHHHHHHHHHHHHHcCCcEEEeCCC-------CCCHHHHHHHHHHcC
Confidence 0 113789999999999999999999983 122467777887776
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=7.7 Score=31.70 Aligned_cols=102 Identities=16% Similarity=0.285 Sum_probs=66.9
Q ss_pred hhHHHHHHHhhccc----ccEEeecCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 40 HNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 40 ~~~~~DlLe~ag~y----ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+..+.+.++...++ +..+-|++|...+.+ +.|.+.++.++++|+.+ .+ |++++ . ++.++.+.+
T Consensus 52 ~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~-~~l~~l~~~~~~~~~~i~i~Tng~~~~-----~----~~~~~~l~~ 121 (245)
T 3c8f_A 52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQA-EFVRDWFRACKKEGIHTCLDTNGFVRR-----Y----DPVIDELLE 121 (245)
T ss_dssp HHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGH-HHHHHHHHHHHTTTCCEEEEECCCCCC-----C----CHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCH-HHHHHHHHHHHHcCCcEEEEeCCCcCc-----C----HHHHHHHHH
Confidence 44566666655554 578899999988865 56899999999998844 34 64422 1 122333444
Q ss_pred cCCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeee
Q 025344 113 VGFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 113 lGF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
. ++.|-||=-+.+ .+.+...+.|+.+++.|+.+.-.+.+
T Consensus 122 ~-~~~v~isld~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~~ 169 (245)
T 3c8f_A 122 V-TDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVV 169 (245)
T ss_dssp T-CSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred h-CCEEEEeCCCCCHHHhhhccCCCHHHHHHHHHHHHhcCCEEEEEEee
Confidence 5 678888754431 34467778999999999875544433
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=88.47 E-value=4.8 Score=40.74 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=100.6
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceec-----CCcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEecCCc
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~-----~Gtl~E~a~~q--g~~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
.=+|.+-+-..++ +-+.++.-++.++++|..+. +|.| |-.... +++.+-+..+.+.+.|.+.|=|-|-.
T Consensus 209 ~Gvd~irIf~s~n---~l~~l~~~i~~ak~~G~~v~~~i~~~~d~-~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~ 284 (718)
T 3bg3_A 209 NGMDVFRVFDSLN---YLPNMLLGMEAAGSAGGVVEAAISYTGDV-ADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMA 284 (718)
T ss_dssp HTCCEEEEECSSC---CHHHHHHHHHHHHTTTSEEEEEEECCSCT-TCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred cCcCEEEEEecHH---HHHHHHHHHHHHHHcCCeEEEEEEeeccc-cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcC
Confidence 3478887776444 44579999999999997642 2333 322211 22345566667778999999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
--+.+.+-.++|+.++++ +. ...+++-+ +. |...-+-.....++|||+.|=.
T Consensus 285 G~~~P~~v~~lV~~lk~~-~p-~~~I~~H~-Hn-------------------------d~GlAvANslaAveAGa~~VD~ 336 (718)
T 3bg3_A 285 GLLKPTACTMLVSSLRDR-FP-DLPLHIHT-HD-------------------------TSGAGVAAMLACAQAGADVVDV 336 (718)
T ss_dssp SCCCHHHHHHHHHHHHHH-ST-TCCEEEEC-CC-------------------------TTSCHHHHHHHHHHTTCSEEEE
T ss_pred CCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-CC-------------------------CccHHHHHHHHHHHhCCCEEEe
Confidence 888899988999999884 10 12344411 11 2333477888889999996533
Q ss_pred ecccccccCCCccHHHHHHHHhccCC
Q 025344 205 DSDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 205 Eargi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
=-.|+=...||...+.+-..+...+.
T Consensus 337 ti~GlGertGN~~lE~vv~~L~~~g~ 362 (718)
T 3bg3_A 337 AADSMSGMTSQPSMGALVACTRGTPL 362 (718)
T ss_dssp BCGGGCSTTSCCBHHHHHHHHTTSTT
T ss_pred cCcccccccCchhHHHHHHHHHhcCC
Confidence 33488888999998888777766654
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=88.38 E-value=1.8 Score=38.48 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gVi--aGv-------g--~--------------- 74 (288)
T 2nuw_A 21 ALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHKLI--FQV-------G--S--------------- 74 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCeE--Eee-------C--C---------------
Confidence 57788888899999999886543 47999999999999987411111 122 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.+..+.|++++..-++|||-|++=.--.+. ..-+---+-..+|++..++-=++.--|
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 75 ---LNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp ---SCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 147888999999999999999987653332 111111222345666666655666555
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=88.32 E-value=2 Score=37.12 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=65.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHh-CCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~-~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+.....+++..++|+|++|+|.+-..-+..+.+++ +++ +|..+..-- +.. -|+.++.|.+.+.++|.|
T Consensus 23 ~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~----l~~~~g~~v~lD~Kl~D-----ipnTv~~~~~~~~~~gad 93 (228)
T 3m47_A 23 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAE----FRKRFGCRIIADFKVAD-----IPETNEKICRATFKAGAD 93 (228)
T ss_dssp SHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHH----HHHHHCCEEEEEEEECS-----CHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHH----HHhcCCCeEEEEEeecc-----cHhHHHHHHHHHHhCCCC
Confidence 668889999999999999999887665555555544 333 454444321 221 133578889999999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.|-|.- ....+....+++.+++.|-+
T Consensus 94 ~vtvh~---~~G~~~l~~~~~~~~~~g~~ 119 (228)
T 3m47_A 94 AIIVHG---FPGADSVRACLNVAEEMGRE 119 (228)
T ss_dssp EEEEES---TTCHHHHHHHHHHHHHHTCE
T ss_pred EEEEec---cCCHHHHHHHHHHHHhcCCC
Confidence 999964 23356666788888776643
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=0.42 Score=43.74 Aligned_cols=121 Identities=19% Similarity=0.289 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhC-------CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHHHH
Q 025344 71 FIEEVVKRAHQH-------DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRYVR 137 (254)
Q Consensus 71 ~l~eKi~l~~~~-------gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----i--~~~~r~~lI~ 137 (254)
.+.|.|+-.++. +|++++..|.+--+. .+...++.+.+.+.|.++|+||+|... + +......+++
T Consensus 204 ~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3hgj_A 204 FPLQVAQAVREVVPRELPLFVRVSATDWGEGGWS--LEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD 281 (349)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCC--HHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHH
Confidence 456667666653 345666433321000 012445666777889999999987542 1 2223456677
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCCCc
Q 025344 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSL 216 (254)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~~ 216 (254)
.+++. +++. .--.| .+. | .+.+++.|++| ||.|++ +|.+..
T Consensus 282 ~ir~~-------~~iP--Vi~~G--------gi~-----------t----~e~a~~~l~~G~aD~V~i-GR~~la----- 323 (349)
T 3hgj_A 282 AVRKR-------VGLR--TGAVG--------LIT-----------T----PEQAETLLQAGSADLVLL-GRVLLR----- 323 (349)
T ss_dssp HHHHH-------HCCE--EEECS--------SCC-----------C----HHHHHHHHHTTSCSEEEE-STHHHH-----
T ss_pred HHHHH-------cCce--EEEEC--------CCC-----------C----HHHHHHHHHCCCceEEEe-cHHHHh-----
Confidence 77663 2221 10011 111 2 46677889999 999998 676653
Q ss_pred cHHHHHHHHhccCCC
Q 025344 217 RADIIAKVIGRLGLE 231 (254)
Q Consensus 217 r~d~i~~ii~~l~~~ 231 (254)
++|++.++.+.++.+
T Consensus 324 nPdl~~k~~~~l~~~ 338 (349)
T 3hgj_A 324 DPYFPLRAAKALGVA 338 (349)
T ss_dssp CTTHHHHHHHHTTCC
T ss_pred CchHHHHHHHHCCCC
Confidence 257889999888843
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=3 Score=37.06 Aligned_cols=119 Identities=11% Similarity=0.068 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--~Gv-------g--------------- 78 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVI--AGT-------G--------------- 78 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 6778888888999999987654 3489999999999998873 2 1111 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccc----CCCccHHHHHHHHh
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLRADIIAKVIG 226 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~----~g~~r~d~i~~ii~ 226 (254)
..+..+.|++++..-++|||-|++=.- | +|+. .-++..+.+.++++
T Consensus 79 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3a5f_A 79 -----SNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE 153 (291)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred -----cccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114788899999999999999998652 1 2542 23567788888863
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCC
Q 025344 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGP 252 (254)
Q Consensus 227 ~l~~~klif--EA-P~k~qQ~~~I~~~Gp 252 (254)
. .+|+- |+ .+-.+...+++..++
T Consensus 154 -~--pnivgiK~s~gd~~~~~~~~~~~~~ 179 (291)
T 3a5f_A 154 -D--KNIVAVXEASGNISQIAQIKALCGD 179 (291)
T ss_dssp -S--TTEEEEEECSCCHHHHHHHHHHHGG
T ss_pred -C--CCEEEEeCCCCCHHHHHHHHHhcCC
Confidence 3 44432 44 455555666665543
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.16 E-value=1.5 Score=39.28 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=62.3
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
-|.++|-|-+| ++....|+.+.+.|..|.-.+|..-.. + ..++.+.. ........+++|+.++
T Consensus 106 aGa~aVklEgg------~e~~~~I~al~~agipV~gHiGLtPq~--v-----~~~ggf~v----~grt~~~a~~~i~rA~ 168 (264)
T 1m3u_A 106 AGANMVKIEGG------EWLVETVQMLTERAVPVCGHLGLTPQS--V-----NIFGGYKV----QGRGDEAGDQLLSDAL 168 (264)
T ss_dssp TTCSEEECCCS------GGGHHHHHHHHHTTCCEEEEEESCGGG--H-----HHHTSSCC----CCCSHHHHHHHHHHHH
T ss_pred cCCCEEEECCc------HHHHHHHHHHHHCCCCeEeeecCCcee--e-----cccCCeEE----EeCCHHHHHHHHHHHH
Confidence 89999999999 366788999999998888888874210 0 00011110 0000113589999999
Q ss_pred HHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 193 ~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
...+|||+.|.+|+- ..++.++|.++++
T Consensus 169 a~~eAGA~~ivlE~v---------p~~~a~~it~~l~ 196 (264)
T 1m3u_A 169 ALEAAGAQLLVLECV---------PVELAKRITEALA 196 (264)
T ss_dssp HHHHHTCCEEEEESC---------CHHHHHHHHHHCS
T ss_pred HHHHCCCcEEEEecC---------CHHHHHHHHHhCC
Confidence 999999999999982 2355666666665
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=2.2 Score=37.93 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=57.8
Q ss_pred hHHHHHHHHHH-cCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQ-VGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~-lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.++++++-+ -|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g-------------- 81 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALI--AQV-------G-------------- 81 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C--------------
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--Eec-------C--------------
Confidence 57788888888 99999988654 3479999999999999873 1 1111 222 1
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||.|++=.
T Consensus 82 ------~~~t~~ai~la~~a~~~Gadavlv~~ 107 (293)
T 1f6k_A 82 ------SVNLKEAVELGKYATELGYDCLSAVT 107 (293)
T ss_dssp ------CSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred ------CCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 11478889999999999999999865
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=88.07 E-value=2.4 Score=38.02 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVi--aGv-------g--------------- 88 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLI--AHV-------G--------------- 88 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 5788899999999999988643 3489999999999999873 1 1111 122 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||.|++=.
T Consensus 89 -----~~~t~~ai~la~~A~~~Gadavlv~~ 114 (303)
T 2wkj_A 89 -----CVSTAESQQLAASAKRYGFDAVSAVT 114 (303)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHhCCCCEEEecC
Confidence 11478889999999999999999866
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.06 E-value=4.8 Score=35.88 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+. |+
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia--Gv----------------------- 83 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA--GT----------------------- 83 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE--EC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE--eC-----------------------
Confidence 57788888889999999875444 378999999999998873 1 11111 22
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+-|++++..-++|||-|++=.
T Consensus 84 ----g~~~t~~ai~la~~a~~~Gadavlv~~ 110 (297)
T 3flu_A 84 ----GANNTVEAIALSQAAEKAGADYTLSVV 110 (297)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred ----CCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 112488889999999999999999876
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=88.00 E-value=1.4 Score=39.48 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=54.7
Q ss_pred hhHHHHHHHhhcccccEEee------------cCcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchH
Q 025344 40 HNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAF 103 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKf------------g~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~ 103 (254)
+..+.+....+-++.|.+-+ ++|++.+-..+.+.+.++-.++. +++|.- .||-+ .+.+
T Consensus 70 ~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~------~~~~ 143 (318)
T 1vhn_A 70 PNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEK------NEVE 143 (318)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSS------CCHH
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCCh------HHHH
Confidence 45666666666666888766 45677777788899999988774 544432 13311 1233
Q ss_pred HHHHHHHHHcCCCEEEecCCcc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSL 125 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti 125 (254)
++.+.+.+.|.++|.|+.++-
T Consensus 144 -~~a~~l~~~G~d~i~v~g~~~ 164 (318)
T 1vhn_A 144 -EIYRILVEEGVDEVFIHTRTV 164 (318)
T ss_dssp -HHHHHHHHTTCCEEEEESSCT
T ss_pred -HHHHHHHHhCCCEEEEcCCCc
Confidence 888999999999999998764
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.99 E-value=5.8 Score=35.22 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 77 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVI--AGT-------G--------------- 77 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 5788888888999999987544 3489999999999998873 2 1111 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccc---CC-CccHHHHHHHHh
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 226 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~---~g-~~r~d~i~~ii~ 226 (254)
..+..+.|++++..-++|||-|++=.- -+|+. .| ++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (294)
T 2ehh_A 78 -----GNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLAS 152 (294)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHh
Confidence 114788899999999999999998652 13552 23 567777777773
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCC
Q 025344 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPK 253 (254)
Q Consensus 227 ~l~~~klif--EA-P~k~qQ~~~I~~~Gp~ 253 (254)
+. .+|+- |+ ++-.+...+++..+++
T Consensus 153 ~~--pnivgiKds~gd~~~~~~~~~~~~~~ 180 (294)
T 2ehh_A 153 EC--ENIVASKESTPNMDRISEIVKRLGES 180 (294)
T ss_dssp HC--TTEEEEEECCSCHHHHHHHHHHHCTT
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhcCCC
Confidence 33 34432 44 3455555666665543
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=3.6 Score=36.61 Aligned_cols=108 Identities=15% Similarity=0.058 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~gvi--aGv-------g--~--------------- 74 (293)
T 1w3i_A 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKII--FQV-------G--G--------------- 74 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCCEE--Eec-------C--C---------------
Confidence 57788888899999999886543 57999999999999998411111 122 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.+..+.|++++..-++|||.|++=.--.+. ..-+---+-..+|++..++-=++.--|
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 75 ---LNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp ---SCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 147888999999999999999997653333 211111222345666666666666655
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.96 E-value=7.7 Score=36.98 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
.+.+..+.|.+.|.|+|-+++++..
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~ 336 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQ 336 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSC
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcc
Confidence 4677888899999999999999873
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=5.1 Score=36.45 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--c------c----------CChhHHH----HHHHHHHHcCCcccce--eeeecCCCC
Q 025344 103 FKEYVEDCKQVGFDTIELNVGS--L------E----------IPEETLL----RYVRLVKSAGLKAKPK--FAVMFNKSD 158 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt--i------~----------i~~~~r~----~lI~~~~~~G~~v~~E--~g~k~~~s~ 158 (254)
|-+--+.|++.|||.|||.-+. + + -+.+.|. ++|+.+++. +-++ +++|
T Consensus 154 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~a---vG~d~pV~vR----- 225 (349)
T 3hgj_A 154 FVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREV---VPRELPLFVR----- 225 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH---SCTTSCEEEE-----
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHH---hcCCceEEEE-----
Confidence 3333455678899999997654 1 1 1234554 455555552 1111 3444
Q ss_pred CCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 159 IPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 159 v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
++|..|.. +-.++++.++.++..-++|+++|-+=.
T Consensus 226 ------------ls~~~~~~-~g~~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 226 ------------VSATDWGE-GGWSLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp ------------EESCCCST-TSCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ------------eccccccC-CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 33333321 222678889999999999999998753
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.93 E-value=2.1 Score=38.70 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 46 ~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv----------------------- 100 (315)
T 3na8_A 46 ALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTI--VSV----------------------- 100 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-----------------------
Confidence 57888888889999999776543 479999999999999883 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 101 ----g~~~t~~ai~la~~A~~~Gadavlv~~ 127 (315)
T 3na8_A 101 ----SDLTTAKTVRRAQFAESLGAEAVMVLP 127 (315)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 112478889999999999999999965
|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=87.86 E-value=1 Score=39.00 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cC--ChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-EI--PEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i--~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++.++.++++||++||+..... .+ +..+..++-+.+++.|+++.+
T Consensus 37 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 86 (296)
T 2g0w_A 37 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE 86 (296)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe
Confidence 688888888888888888874321 11 223455677778888888665
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=5 Score=36.56 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------c-----------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCC
Q 025344 103 FKEYVEDCKQVGFDTIELNVGS-------L-----------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt-------i-----------~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~ 160 (254)
|-+--+.+++.|||.|||.-+. + -=+.+.|. ++|+.+++. +-.-+++|...
T Consensus 146 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~---v~~pv~vRls~---- 218 (340)
T 3gr7_A 146 FQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREV---WDGPLFVRISA---- 218 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH---CCSCEEEEEES----
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHh---cCCceEEEecc----
Confidence 3333455678899999998652 0 11334554 555666653 11125665332
Q ss_pred CccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..|.. +-.+.++.++.++..-++|+++|-+=.
T Consensus 219 -------------~~~~~-~g~~~~~~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 219 -------------SDYHP-DGLTAKDYVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp -------------CCCST-TSCCGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred -------------ccccC-CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 22211 112467778888888999999998843
|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.69 Score=40.33 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccC-----ChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG--SLEI-----PEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i-----~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++.++.++++||+.||+... .+++ +.+...++.+.+++.|+++.+
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 69 (340)
T 2zds_A 16 PLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA 69 (340)
T ss_dssp CHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999863 3332 345577888999999999854
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=87.46 E-value=3.4 Score=36.69 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 77 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVI--AGA-------G--------------- 77 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 5788888888999999988543 3479999999999998873 2 1111 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||-|++=.
T Consensus 78 -----~~~t~~ai~la~~a~~~Gadavlv~~ 103 (289)
T 2yxg_A 78 -----SNCTEEAIELSVFAEDVGADAVLSIT 103 (289)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 11478889999999999999999866
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=87.45 E-value=10 Score=35.14 Aligned_cols=142 Identities=8% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
+-+.|..+| ||.+=.||+.+ .|. ..+-++.+++.+..+..-+| .+. ..+. ++.+.+.|.+.|-|..
T Consensus 30 ia~~L~~~G--v~~IE~g~p~~--~~~--~~~~~~~i~~~~~~~~v~~~-----~r~--~~~d-i~~a~~~g~~~v~i~~ 95 (382)
T 2ztj_A 30 IAKALDEFG--IEYIEVTTPVA--SPQ--SRKDAEVLASLGLKAKVVTH-----IQC--RLDA-AKVAVETGVQGIDLLF 95 (382)
T ss_dssp HHHHHHHHT--CSEEEECCTTS--CHH--HHHHHHHHHTSCCSSEEEEE-----EES--CHHH-HHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcC--cCEEEEcCCcC--CHH--HHHHHHHHHhcCCCcEEEEE-----ccc--Chhh-HHHHHHcCCCEEEEEe
Confidence 345555666 88888888653 233 56777777777654221223 122 2333 6778888999999876
Q ss_pred Cccc-------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHH
Q 025344 123 GSLE-------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 123 Gti~-------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
.+-+ .+. +.-.+.|+.+++.|-....++...+.. ..|++.+++.+
T Consensus 96 ~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~------------------------~~~~~~~~~~~ 151 (382)
T 2ztj_A 96 GTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTF------------------------RSEEQDLLAVY 151 (382)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTT------------------------TSCHHHHHHHH
T ss_pred ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCC------------------------CCCHHHHHHHH
Confidence 5533 232 445688999999993333345542110 12589999999
Q ss_pred HHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 192 ~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+...++ |+.| .|+|..|-..+..+.++++.+
T Consensus 152 ~~~~~~-a~~i-----~l~DT~G~~~P~~~~~lv~~l 182 (382)
T 2ztj_A 152 EAVAPY-VDRV-----GLADTVGVATPRQVYALVREV 182 (382)
T ss_dssp HHHGGG-CSEE-----EEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHh-cCEE-----EecCCCCCCCHHHHHHHHHHH
Confidence 999999 9866 368888888888887777543
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=87.38 E-value=3 Score=37.22 Aligned_cols=76 Identities=22% Similarity=0.165 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv----------------------- 76 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVI--AGA----------------------- 76 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--Ecc-----------------------
Confidence 5788889989999999987543 3489999999999998873 1 1111 222
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 77 ----g~~~t~~ai~la~~A~~~Gadavlv~~ 103 (297)
T 2rfg_A 77 ----GSNNPVEAVRYAQHAQQAGADAVLCVA 103 (297)
T ss_dssp ----CCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 112478889999999999999999865
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=87.36 E-value=5.5 Score=35.61 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVi--aGv-------g--------------- 89 (301)
T 1xky_A 34 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVI--AGT-------G--------------- 89 (301)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEE--eCC-------C---------------
Confidence 5788899999999999988544 3489999999999999873 1 1111 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||.|++=.
T Consensus 90 -----~~~t~~ai~la~~A~~~Gadavlv~~ 115 (301)
T 1xky_A 90 -----SNNTHASIDLTKKATEVGVDAVMLVA 115 (301)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 12478889999999999999999865
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=87.29 E-value=6.7 Score=33.30 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecC---C--cHH----HHHHHhCCchHHHHHHHHH
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G--DWA----EHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---G--tl~----E~a~~qg~~~~~~yl~~~k 111 (254)
.+++.|+.+.+. .|.+=+.... ....+++.-++++++|+.+.. + +++ +....+..+.+++.++.|+
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~ 114 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGG----LAGRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAG 114 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTT----CGGGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----hHHHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466777766665 7777777653 134589999999999997752 2 121 1111111126889999999
Q ss_pred HcCCCEEEecCCcccC------Ch-------hHHHHHHHHHHHcCCcccceee
Q 025344 112 QVGFDTIELNVGSLEI------PE-------ETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 112 ~lGF~~IEISdGti~i------~~-------~~r~~lI~~~~~~G~~v~~E~g 151 (254)
.+|.+.|=+..|+... .. +...++.+.+++.|+++.-|-.
T Consensus 115 ~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 167 (287)
T 3kws_A 115 ELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEPL 167 (287)
T ss_dssp HTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999999997765432 22 3344556677888888766644
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=2.1 Score=37.77 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHcCCC-EEEecCCcc------cC--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 025344 102 AFKEYVEDCKQVGFD-TIELNVGSL------EI--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~-~IEISdGti------~i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
.+.+..+.+.+.||| +|||+-++= .+ +.+...++|+.+++.= -+| +.+|-.
T Consensus 107 ~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~P-v~vKi~----------------- 166 (311)
T 1jub_A 107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKP-LGVKLP----------------- 166 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSC-EEEEEC-----------------
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCC-EEEEEC-----------------
Confidence 455566667788999 999975421 12 5666778888888741 112 444421
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|. | |.+++.+.++...++||+.|++-.+
T Consensus 167 ~~-~------~~~~~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 167 PY-F------DLVHFDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp CC-C------SHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CC-C------CHHHHHHHHHHHHHcCCcEEEecCC
Confidence 11 1 4667788899999999999998665
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=4.4 Score=37.08 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv-------g--------------- 108 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVL--IGT-------G--------------- 108 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 57788888889999999886543 579999999999998873 1 1111 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||.|++=.
T Consensus 109 -----~~st~eai~la~~A~~~Gadavlv~~ 134 (343)
T 2v9d_A 109 -----GTNARETIELSQHAQQAGADGIVVIN 134 (343)
T ss_dssp -----SSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 12478889999999999999999865
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.89 E-value=3 Score=35.99 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
...+.+++.- +|++=+ +++.+.+++.+++-++.+|++|+.+.... ... +..+.+.++|+|.|=+
T Consensus 92 ~~i~~~~~aG---ad~I~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 92 QDVDALAQAG---ADIIAF--DASFRSRPVDIDSLLTRIRLHGLLAMADC----------STV-NEGISCHQKGIEFIGT 155 (229)
T ss_dssp HHHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC----------SSH-HHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHcC---CCEEEE--CccccCChHHHHHHHHHHHHCCCEEEEec----------CCH-HHHHHHHhCCCCEEEe
Confidence 3455555544 444433 33344444679999999999999877641 012 2234567899999954
Q ss_pred cC-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 121 NV-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 121 Sd-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
+. |... ....+ .++++++++.+..|+.|-|+. + .+.+++.++
T Consensus 156 ~~~g~t~~~~~~~~~-~~li~~l~~~~ipvIA~GGI~-----------------------------t----~~d~~~~~~ 201 (229)
T 3q58_A 156 TLSGYTGPITPVEPD-LAMVTQLSHAGCRVIAEGRYN-----------------------------T----PALAANAIE 201 (229)
T ss_dssp TTTTSSSSCCCSSCC-HHHHHHHHTTTCCEEEESSCC-----------------------------S----HHHHHHHHH
T ss_pred cCccCCCCCcCCCCC-HHHHHHHHHcCCCEEEECCCC-----------------------------C----HHHHHHHHH
Confidence 32 2211 11122 367777776677777777772 1 455667789
Q ss_pred cCCcEEEEecccccc
Q 025344 197 AGADMIMIDSDDVCK 211 (254)
Q Consensus 197 AGA~~ViiEargi~d 211 (254)
+||+-|+| +..+++
T Consensus 202 ~GadgV~V-Gsai~~ 215 (229)
T 3q58_A 202 HGAWAVTV-GSAITR 215 (229)
T ss_dssp TTCSEEEE-CHHHHC
T ss_pred cCCCEEEE-chHhcC
Confidence 99999999 555654
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=86.84 E-value=4.6 Score=36.18 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVi--aGv----------------------- 88 (306)
T 1o5k_A 34 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVI--VGA----------------------- 88 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--EcC-----------------------
Confidence 5888899999999999988654 3489999999999999873 1 1111 222
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||.|++=.
T Consensus 89 ----g~~st~~ai~la~~A~~~Gadavlv~~ 115 (306)
T 1o5k_A 89 ----GTNSTEKTLKLVKQAEKLGANGVLVVT 115 (306)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred ----CCccHHHHHHHHHHHHhcCCCEEEECC
Confidence 112478889999999999999999865
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.68 E-value=4.4 Score=35.95 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 77 (292)
T 2vc6_A 22 ALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVI--AGA-------G--------------- 77 (292)
T ss_dssp HHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 5788899999999999987543 3489999999999999873 1 1121 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccc---CC-CccHHHHHHHHh
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH---AD-SLRADIIAKVIG 226 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~---~g-~~r~d~i~~ii~ 226 (254)
..+..+.|++++..-++|||-|++=.- | +|+. .| ++..+.+.+|++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (292)
T 2vc6_A 78 -----SNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE 152 (292)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence 114788899999999999999999662 1 2442 23 566777777764
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCC
Q 025344 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPK 253 (254)
Q Consensus 227 ~l~~~klif--EA-P~k~qQ~~~I~~~Gp~ 253 (254)
+.+ +|+- |+ ++-.+...+++..+++
T Consensus 153 ~~p--nIvgiK~s~gd~~~~~~~~~~~~~~ 180 (292)
T 2vc6_A 153 DCP--NVKGVXDATGNLLRPSLERMACGED 180 (292)
T ss_dssp HCT--TEEEEEECSCCTHHHHHHHHHSCTT
T ss_pred hCC--CEEEEecCCCCHHHHHHHHHHcCCC
Confidence 332 3322 34 3455555666655543
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=86.68 E-value=3 Score=37.06 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv----------------------- 77 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVI--AGT----------------------- 77 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-----------------------
Confidence 5778888888899999988654 3489999999999999873 1 1111 222
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 78 ----g~~~t~~ai~la~~a~~~Gadavlv~~ 104 (292)
T 2ojp_A 78 ----GANATAEAISLTQRFNDSGIVGCLTVT 104 (292)
T ss_dssp ----CCSSHHHHHHHHHHTTTSSCSEEEEEC
T ss_pred ----CCccHHHHHHHHHHHHhcCCCEEEECC
Confidence 112478889999999999999999865
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.67 E-value=3.7 Score=36.79 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 38 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 93 (304)
T 3cpr_A 38 AGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLI--AGV-------G--------------- 93 (304)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--ecC-------C---------------
Confidence 5788888888999999877543 3489999999999998873 1 1121 222 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+..+.|++++..-++|||-|++=.
T Consensus 94 -----~~st~~ai~la~~A~~~Gadavlv~~ 119 (304)
T 3cpr_A 94 -----TNNTRTSVELAEAAASAGADGLLVVT 119 (304)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 11478889999999999999999866
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=2.2 Score=37.92 Aligned_cols=112 Identities=13% Similarity=0.222 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCC
Q 025344 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGL 144 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~ 144 (254)
+.+.+++.++.+|++|+.+.. |+ + ..++ ++.+.++|.+.|=|++- +...+.+.-.++.+.+. .+.
T Consensus 147 ~~~~l~~l~~~a~~lGl~~lv----ev---~---t~ee-~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~-~~~ 214 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMTALV----EV---H---TEQE-ADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLP-SSV 214 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE----EE---S---SHHH-HHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSC-TTS
T ss_pred CHHHHHHHHHHHHHCCCcEEE----Ec---C---CHHH-HHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCc-ccC
Confidence 344577777777777775422 11 1 3333 34455678888877753 23333333333322211 145
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHH
Q 025344 145 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 224 (254)
Q Consensus 145 ~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~i 224 (254)
.+..|.|++ + .+.+++.+++||+-|+| ++.|+.... -...+.++
T Consensus 215 pvVaegGI~-----------------------------t----~edv~~l~~~GadgvlV-Gsal~~a~d--p~~~~~~l 258 (272)
T 3qja_A 215 IRIAESGVR-----------------------------G----TADLLAYAGAGADAVLV-GEGLVTSGD--PRAAVADL 258 (272)
T ss_dssp EEEEESCCC-----------------------------S----HHHHHHHHHTTCSEEEE-CHHHHTCSC--HHHHHHHH
T ss_pred EEEEECCCC-----------------------------C----HHHHHHHHHcCCCEEEE-cHHHhCCCC--HHHHHHHH
Confidence 666666662 2 34556678999999998 344665542 13345555
Q ss_pred Hhc
Q 025344 225 IGR 227 (254)
Q Consensus 225 i~~ 227 (254)
++.
T Consensus 259 ~~~ 261 (272)
T 3qja_A 259 VTA 261 (272)
T ss_dssp HTT
T ss_pred Hhh
Confidence 543
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=86.57 E-value=1.2 Score=39.18 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=60.3
Q ss_pred cccccCChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 025344 62 GSHSLMPKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (254)
Q Consensus 62 GT~~l~~~~~l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (254)
||-.+|=++...+.++..++++| .|.-+.= ++...+..+.|-+-|+++|||.-- ...-.+.|+.++
T Consensus 14 ~~~~~~~~~~m~~~~~~l~~~~vv~Vir~~~--------~~~a~~~a~al~~gGi~~iEvt~~-----t~~a~e~I~~l~ 80 (232)
T 4e38_A 14 GTENLYFQSMMSTINNQLKALKVIPVIAIDN--------AEDIIPLGKVLAENGLPAAEITFR-----SDAAVEAIRLLR 80 (232)
T ss_dssp ------CCCCHHHHHHHHHHHCEEEEECCSS--------GGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCEEEEEEcCC--------HHHHHHHHHHHHHCCCCEEEEeCC-----CCCHHHHHHHHH
Confidence 55556656656777788888898 5554521 224556667788889999999433 334568888887
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 141 ~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+. .++.-+ |. +..++ .++++..++|||++|+.=
T Consensus 81 ~~----~~~~~i-------Ga------GTVlt---------------~~~a~~Ai~AGA~fIvsP 113 (232)
T 4e38_A 81 QA----QPEMLI-------GA------GTILN---------------GEQALAAKEAGATFVVSP 113 (232)
T ss_dssp HH----CTTCEE-------EE------ECCCS---------------HHHHHHHHHHTCSEEECS
T ss_pred Hh----CCCCEE-------eE------CCcCC---------------HHHHHHHHHcCCCEEEeC
Confidence 73 122222 11 11122 788999999999999853
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=86.53 E-value=4.4 Score=35.79 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=62.3
Q ss_pred HcCCCEEEecCCc-----ccCChhHHHHHHHHHHHc----CCc--ccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 112 QVGFDTIELNVGS-----LEIPEETLLRYVRLVKSA----GLK--AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 112 ~lGF~~IEISdGt-----i~i~~~~r~~lI~~~~~~----G~~--v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+.|..+|-|=||. --+|.++.++-|+.+++. |.- |.--.... . -| +.|+
T Consensus 104 ~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~--~--~g-~~~~--------------- 163 (255)
T 2qiw_A 104 EAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAV--K--LG-ADVF--------------- 163 (255)
T ss_dssp HTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHH--H--HC-TTTS---------------
T ss_pred HcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechh--h--cc-CCcc---------------
Confidence 4899999999986 235667777888877776 532 22111110 0 00 0000
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC-CCceE
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG-LEKTM 234 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~-~~kli 234 (254)
....++.|++++...+|||+.|.+|+- ...+++.+|.++++ +-+++
T Consensus 164 ~~~~~~ai~ra~a~~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~ 210 (255)
T 2qiw_A 164 EDPMVEAIKRIKLMEQAGARSVYPVGL--------STAEQVERLVDAVSVPVNIT 210 (255)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEECCC--------CSHHHHHHHHTTCSSCBEEE
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHhCCCCEEEE
Confidence 113789999999999999999999973 23578888888876 43444
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=86.45 E-value=2.9 Score=34.76 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++++.+.+.|.+.|.+......=|.+...++++.+++. |+.+. +. + .
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~----~~-----~-----------~---------- 127 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM----AD-----I-----------A---------- 127 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE----EE-----C-----------S----------
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEE----ec-----C-----------C----------
Confidence 456778889999999987654332224556888888887 66543 21 1 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccC-----CCccHHHHHHHHhccC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA-----DSLRADIIAKVIGRLG 229 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~-----g~~r~d~i~~ii~~l~ 229 (254)
+++ .+++..++||++|++-..|..+.. ....-+.+.++.+.++
T Consensus 128 -t~~----e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ 175 (223)
T 1y0e_A 128 -TVE----EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD 175 (223)
T ss_dssp -SHH----HHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCC
T ss_pred -CHH----HHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCC
Confidence 233 345578999999998665543322 1223456777776553
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.35 E-value=10 Score=33.62 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhccccc---EEeecCcccccCC----hhHHHHHHHHHHhCCceecC--C-cH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD---GLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DW 91 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID---~lKfg~GT~~l~~----~~~l~eKi~l~~~~gV~v~~--G-tl 91 (254)
+..|++-++-+|. .+...+..++.+..|=+ .+..+.|-+.... ++.+.+..+++.+..|.--. | .+
T Consensus 27 ~~~gV~~~v~~g~----~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~vvaIGEiGLD~ 102 (287)
T 3rcm_A 27 LEAGVTQMLLTGT----SLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDF 102 (287)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGGCCTTHHHHHHHHHTSTTEEEEEEEEEET
T ss_pred HHcCCeEEEEecC----CHHHHHHHHHHHHhCCCCCceEEEEEEECcCccccCCHHHHHHHHHHhcCCCeEEEEEeeeCC
Confidence 4569999999997 56788888888888865 4777777665432 23466655666554432211 2 12
Q ss_pred H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 92 A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 92 ~----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
. ....++. .|.+-++.|+++|...+==+-. ..+ ++++.+++.+... .-++-...+ |
T Consensus 103 ~~~~~~~~~Q~~--~F~~ql~lA~e~~lPv~iH~r~----a~~---~~l~il~~~~~~~--~~~V~H~fs--G------- 162 (287)
T 3rcm_A 103 NRDFSPRPLQEK--ALEAQLTLAAQLRLPVFLHERD----ASE---RLLAILKDYRDHL--TGAVVHCFT--G------- 162 (287)
T ss_dssp TTCSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES----CHH---HHHHHHHTTGGGC--SCEEECSCC--C-------
T ss_pred CcccCcHHHHHH--HHHHHHHHHHHhCCCEEEEcCC----cHH---HHHHHHHHcCCCC--CeEEEEeCC--C-------
Confidence 1 1123343 7999999999999887633332 233 4455555543211 113321110 1
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccc-cccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV-CKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi-~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.|+.|.+.=+- |. +.. -|...+.++++.+|++||++|...|
T Consensus 163 ---------------~----~e~a~~~l~~G~yis~~---g~i~~~---k~~~~l~~~v~~ip~drlLlETD~P 211 (287)
T 3rcm_A 163 ---------------E----REALFAYLDLDLHIGIT---GWICDE---RRGTHLHPLVGNIPEGRLMLESDAP 211 (287)
T ss_dssp ---------------C----HHHHHHHHHTTCEEEEC---GGGGCT---TTCGGGHHHHTTSCTTSEEECCCTT
T ss_pred ---------------C----HHHHHHHHHCCcEEEEC---chhccc---cCHHHHHHHHHhcCCccEEEeccCC
Confidence 1 56777888899654432 42 210 1223467888999999999998654
|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=86.25 E-value=2.6 Score=36.70 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CCh----hHHHHHHHHHHHcCCcccceeee--ecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE--IPE----ETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~~----~~r~~lI~~~~~~G~~v~~E~g~--k~~~s~v~~~~d~~~~~~~~~ 173 (254)
..+..++.++++||++||+...... .|. ++..++-+.+++.|+++.+=... ......+.+ .|++
T Consensus 36 ~~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~-~d~~------- 107 (316)
T 3qxb_A 36 PDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTYNHFLA-PTLE------- 107 (316)
T ss_dssp HHHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTC-SSHH-------
T ss_pred HHHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEEeeccccccccccCCC-CCHH-------
Confidence 4566678889999999999876543 122 25667788889999997542111 000001111 1111
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc----ccccCCCccH-------HH---HHHHHhccCCCceEEec--
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD----VCKHADSLRA-------DI---IAKVIGRLGLEKTMFEA-- 237 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg----i~d~~g~~r~-------d~---i~~ii~~l~~~klifEA-- 237 (254)
......+.+.+.++..-+.||..|++-.-+ .+.. ..-+. +- +.+.++..|+..|.+|.
T Consensus 108 -----~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~~ 181 (316)
T 3qxb_A 108 -----LQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALN-PARREEIYAIARDMWIELAAYAKRQGLSMLYVEPVP 181 (316)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCC-cccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 001124556666777777899999865432 1111 00111 11 22233445664488997
Q ss_pred C------CchhHHHHHHHh
Q 025344 238 T------NPRTSEWFIRRY 250 (254)
Q Consensus 238 P------~k~qQ~~~I~~~ 250 (254)
. ...+-..+++.+
T Consensus 182 ~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 182 LATEFPSSAADAARLMADL 200 (316)
T ss_dssp CTTBSSCSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHHH
Confidence 2 234456688877
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=86.18 E-value=0.76 Score=39.31 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=69.7
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-c------HHHH-------------HHHhCCc
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D------WAEH-------------LIRNGPS 101 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-t------l~E~-------------a~~qg~~ 101 (254)
..=+.+..+| .|.+=+.+.....++.+.+++..++++++|+.+..- + +... ...+..+
T Consensus 25 ~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~ 102 (290)
T 3tva_A 25 VHLEVAQDLK--VPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVA 102 (290)
T ss_dssp BCHHHHHHTT--CSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHH
T ss_pred HHHHHHHHcC--CCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHH
Confidence 3344444455 677777664433455667999999999999976542 1 1110 0001112
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hh-------HHHHHHHHHHHcCCcccceeee
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EE-------TLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~-------~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
.+++.++.|++||.+.|=+..|...-. .+ ...++.+.+++.|.++.-|-..
T Consensus 103 ~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~ 161 (290)
T 3tva_A 103 EMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQ 161 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 689999999999999999987865322 22 2345566778889887777654
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=2.9 Score=39.74 Aligned_cols=139 Identities=12% Similarity=0.205 Sum_probs=87.2
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
+-+.|..+| ||.+=.||..+. |. -.+-++...+.+. .++ +| ... ..+. ++.+.+.|.+.|-|
T Consensus 66 Ia~~L~~~G--v~~IEvG~P~as--p~--d~~~~~~i~~~~~~~~v~--~~-----~r~--~~~d-i~~A~~aG~~~V~i 129 (423)
T 3ivs_A 66 IAKALDNFG--VDYIELTSPVAS--EQ--SRQDCEAICKLGLKCKIL--TH-----IRC--HMDD-ARVAVETGVDGVDV 129 (423)
T ss_dssp HHHHHHHHT--CSEEEECCTTSC--HH--HHHHHHHHHTSCCSSEEE--EE-----EES--CHHH-HHHHHHTTCSEEEE
T ss_pred HHHHHHHcC--CCEEEEeecccC--HH--HHHHHHHHHhcCCCCEEE--Ee-----ecc--Chhh-HHHHHHcCCCEEEE
Confidence 345566666 788888885432 22 2333444444443 222 11 121 3333 57777889999998
Q ss_pred cCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 121 NVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 121 SdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
...+- ..+ .+.-.+.|+.+++.|+.| +|...+.. ..|++.++
T Consensus 130 ~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V--~~~~eda~------------------------r~d~~~~~ 183 (423)
T 3ivs_A 130 VIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEV--RFSSEDSF------------------------RSDLVDLL 183 (423)
T ss_dssp EEEC-------------CHHHHHHHHHHHHHHTTTCEE--EEEEESGG------------------------GSCHHHHH
T ss_pred EeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEccCc------------------------CCCHHHHH
Confidence 64432 222 344456899999999876 44442110 12588899
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 184 ~v~~~~~~~Ga~~i-----~l~DTvG~~~P~~v~~lv~~l 218 (423)
T 3ivs_A 184 SLYKAVDKIGVNRV-----GIADTVGCATPRQVYDLIRTL 218 (423)
T ss_dssp HHHHHHHHHCCSEE-----EEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-----ccCCccCcCCHHHHHHHHHHH
Confidence 99999999999865 478888998888888877554
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=2 Score=39.14 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=87.4
Q ss_pred HHHhhcccccEEeecCcccccCChhHHHHHHHHHHh----CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~----~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.|..+| ||.+=.||+.+.-.+.+.+++..+.... -++.+. ++..+ . + .++.+.+.|.+.|-|.
T Consensus 50 ~L~~~G--v~~IE~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~-------~l~~~--~-~-~i~~a~~~g~~~v~i~ 116 (337)
T 3ble_A 50 LLQKLN--VDRVEIASARVSKGELETVQKIMEWAATEQLTERIEIL-------GFVDG--N-K-TVDWIKDSGAKVLNLL 116 (337)
T ss_dssp HHHTTC--CSEEEEEETTSCTTHHHHHHHHHHHHHHTTCGGGEEEE-------EESST--T-H-HHHHHHHHTCCEEEEE
T ss_pred HHHHcC--CCEEEEeCCCCChhHHHHHHHHHhhhhhhccCCCCeEE-------EEccc--h-h-hHHHHHHCCCCEEEEE
Confidence 444445 7888888876533333556655543221 122221 22222 1 1 6788888999999986
Q ss_pred CCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-++ ..+.-.+.|+.+++.|++|. +...+ . ...+..+++.+++
T Consensus 117 ~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~~~----~-----------------~~~~~~~~~~~~~ 173 (337)
T 3ble_A 117 TKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYLED----W-----------------SNGFRNSPDYVKS 173 (337)
T ss_dssp EECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEE--EEEET----H-----------------HHHHHHCHHHHHH
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEEE----C-----------------CCCCcCCHHHHHH
Confidence 543222 12455678899999998753 44421 0 0011225899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 174 ~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 207 (337)
T 3ble_A 174 LVEHLSKEHIERIF-----LPDTLGVLSPEETFQGVDSL 207 (337)
T ss_dssp HHHHHHTSCCSEEE-----EECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE-----EecCCCCcCHHHHHHHHHHH
Confidence 99999999998764 57788888888777776543
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=4.5 Score=33.99 Aligned_cols=93 Identities=6% Similarity=-0.028 Sum_probs=56.2
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
.+...-++++..+.++|++|+|+=-..-...+.++ ..|++ +.++.. .-+.+ .-..|++.+.+.|.
T Consensus 17 ~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i~----~lr~~~~~~~i~ld~~l~d--------~p~~~~~~~~~aGa 84 (218)
T 3jr2_A 17 NLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVS----TLRHNHPNHILVCDMKTTD--------GGAILSRMAFEAGA 84 (218)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHH----HHHHHCTTSEEEEEEEECS--------CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHHH----HHHHhCCCCcEEEEEeecc--------cHHHHHHHHHhcCC
Confidence 56777788888888999999995221112223333 33333 444432 11211 12337788899999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (254)
+.|-+-+-.. .+.-.++++.++++|.++
T Consensus 85 d~i~vh~~~~---~~~~~~~~~~~~~~g~~~ 112 (218)
T 3jr2_A 85 DWITVSAAAH---IATIAACKKVADELNGEI 112 (218)
T ss_dssp SEEEEETTSC---HHHHHHHHHHHHHHTCEE
T ss_pred CEEEEecCCC---HHHHHHHHHHHHHhCCcc
Confidence 9998876542 344567888888876543
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=85.94 E-value=3 Score=37.66 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCceecCCcHH--HHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-Ccccceeeee
Q 025344 82 HDVYVSTGDWA--EHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVM 153 (254)
Q Consensus 82 ~gV~v~~Gtl~--E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k 153 (254)
.||.+.+=|.| +- -.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 13 ~Gv~~a~vTPF~~~d-g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVi--aGv- 88 (314)
T 3d0c_A 13 STISGINIVPFLEGT-REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVV--AGI- 88 (314)
T ss_dssp SSEEECCCCCBCTTT-CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEE-
T ss_pred CceEEeeeccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEE--ecC-
Confidence 46655555544 21 0111225888899999999999977543 3489999999999998873 1 1111 122
Q ss_pred cCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------c
Q 025344 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------D 208 (254)
Q Consensus 154 ~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------g 208 (254)
+. +..+.|++++..-++|||.|++=.- -
T Consensus 89 --------------------------g~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 141 (314)
T 3d0c_A 89 --------------------------GY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSI 141 (314)
T ss_dssp --------------------------CS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEE
T ss_pred --------------------------Cc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 12 4778899999999999999998652 2
Q ss_pred ccccCCCccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCC
Q 025344 209 VCKHADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGP 252 (254)
Q Consensus 209 i~d~~g~~r~d~i~~ii~~l~~~klif--EA-P~k~qQ~~~I~~~Gp 252 (254)
+|+..|.+..+.+.+|++ . .+|+- |+ .+-.+...+++..++
T Consensus 142 lYn~tg~l~~~~~~~La~-~--pnIvgiKdssgd~~~~~~~~~~~~~ 185 (314)
T 3d0c_A 142 IYFKDAHLSDDVIKELAP-L--DKLVGIKYAINDIQRVTQVMRAVPK 185 (314)
T ss_dssp EEECCTTSCTHHHHHHTT-C--TTEEEEEECCCCHHHHHHHHHHSCG
T ss_pred EEeCCCCcCHHHHHHHHc-C--CCEEEEEeCCCCHHHHHHHHHhcCC
Confidence 366555566677777752 3 44432 44 345555566665544
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=85.87 E-value=14 Score=33.98 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-ccccccccCCCccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AFGAYVARAPRSTE 179 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~~~~~~~~~~~~~~ 179 (254)
+.+..|-+.||+.|=|.-... |.++= .++++.+...|.-|--|+|.=-+ .+|. .-...+|
T Consensus 89 e~i~~ai~~GFtSVMiDgS~~--p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg------~Ed~v~~~~~yT------- 153 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMIDASHH--PFDENVRITKEVVAYAHARSVSVEAELGTLGG------IEEDVQNTVQLT------- 153 (323)
T ss_dssp HHHHHHHHTTCSEEEECCTTS--CHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------------CCCC-------
T ss_pred HHHHHHHHcCCCeEEecCCCC--CHHHHHHHHHHHHHHHHHcCCeEEEEeCCccC------CccCcccccccC-------
Confidence 457778889999998866544 44432 36788899999999999998321 1211 0011233
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEec---ccccc--cCCC--ccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDS---DDVCK--HADS--LRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG 251 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d--~~g~--~r~d~i~~ii~~l~~~klifEAP-~k~qQ~~~I~~~G 251 (254)
||++..+.+++ -|.|.+=+== -|.|. .+-. ++.|.+++|-+.++.-=++==+. -|+.-+..|+.||
T Consensus 154 ---dPeea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~g 227 (323)
T 2isw_A 154 ---EPQDAKKFVEL---TGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYG 227 (323)
T ss_dssp ---CHHHHHHHHHH---HCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHH---HCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhc
Confidence 67777766664 6888665532 28998 4434 88999999988886443333333 4666677788887
Q ss_pred CC
Q 025344 252 PK 253 (254)
Q Consensus 252 p~ 253 (254)
-+
T Consensus 228 g~ 229 (323)
T 2isw_A 228 GK 229 (323)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.84 E-value=3.2 Score=37.84 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv----------------------- 110 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLM--AGI----------------------- 110 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEE-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-----------------------
Confidence 5778888888899999987654 3489999999999998873 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 111 ----g~~st~eai~la~~A~~~Gadavlv~~ 137 (332)
T 2r8w_A 111 ----GALRTDEAVALAKDAEAAGADALLLAP 137 (332)
T ss_dssp ----CCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 112478889999999999999999865
|
| >2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A | Back alignment and structure |
|---|
Probab=85.73 E-value=3.9 Score=36.63 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=77.9
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCC-------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcc
Q 025344 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP-------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR 163 (254)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~-------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~ 163 (254)
.+|-..+.+-++++.+.||+.+|||..++.+- .++..++-+.++++|+.+...-.. .-.+++ .
T Consensus 57 ~~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~~~~w~~~~~~~~~~~~~~~~~~~~gi~i~~H~py---~iNL~S-~ 132 (301)
T 2j6v_A 57 AENLRDLERILRFNADHGFALFRIGQHLIPFASHPLFPYDWEGAYEEELARLGALARAFGQRLSMHPGQ---YVNPGS-P 132 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTSTTCCSCHHHHHHHHHHHHHHHHHHTTCEEEECCCT---TCCTTC-S
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccCcccccCCCcccCCcCCCCHHHHHHHHHHHHHcCCeEEEeCch---hhcCCC-C
Confidence 44334788899999999999999988876653 256667778889999876442221 112222 1
Q ss_pred ccccccccccCCCccccccCHHHHHHHHHHHHHcCCc--EEEEecccccccCCCccHHHHHHHHhccCC-----CceEEe
Q 025344 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD--MIMIDSDDVCKHADSLRADIIAKVIGRLGL-----EKTMFE 236 (254)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~--~ViiEargi~d~~g~~r~d~i~~ii~~l~~-----~klifE 236 (254)
|++ -...+++.+.+.++++-+.|+. .|++=.-+.|. . +++.++.+++.+.. ++|..|
T Consensus 133 ~~e------------~re~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~~~---~-~e~~~~r~~e~l~~~~~a~~~l~lE 196 (301)
T 2j6v_A 133 DPE------------VVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYG---E-KGKALRRFVENLRGEEEVLRYLALE 196 (301)
T ss_dssp CHH------------HHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTT---C-HHHHHHHHHHHHTTCHHHHHHEEEE
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCC---C-HHHHHHHHHHHHhHHHhhcceEEEE
Confidence 111 0123578888999999899943 67666655443 2 56667766655541 256666
Q ss_pred cC
Q 025344 237 AT 238 (254)
Q Consensus 237 AP 238 (254)
.-
T Consensus 197 n~ 198 (301)
T 2j6v_A 197 ND 198 (301)
T ss_dssp CC
T ss_pred eC
Confidence 54
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=85.62 E-value=2.6 Score=36.33 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=84.8
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccCCh---hHHHHHHHHHHhCCceecCC----cHHHHHHHh--CCchHHHHHHHH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDVYVSTG----DWAEHLIRN--GPSAFKEYVEDC 110 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~~~---~~l~eKi~l~~~~gV~v~~G----tl~E~a~~q--g~~~~~~yl~~~ 110 (254)
...++..++.-.+.||+. +-.|+. ..+ +.+++-++++|++|+++... |. + +.. .++.+.+..+.+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~-l~~~~~--~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~-~--l~~~~~~~~~~~~a~~a 175 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIH-VNVGSD--EDWEAYRDLGMIAETCEYWGMPLIAMMYPRGK-H--IQNERDPELVAHAARLG 175 (273)
T ss_dssp CSCHHHHHHTTCSEEEEE-EEETST--THHHHHHHHHHHHHHHHHHTCCEEEEEEECST-T--CSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEE-EecCCC--CHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCc-c--cCCCCCHhHHHHHHHHH
Confidence 457788888777777552 222322 111 24778889999999866542 11 0 001 112345555888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.+.|.|+|=+|.. .+ .++++.+++. ...++..=|+. ..+.++..+
T Consensus 176 ~~~Gad~i~~~~~---~~----~~~l~~i~~~~~ipvva~GGi~---------------------------~~~~~~~~~ 221 (273)
T 2qjg_A 176 AELGADIVKTSYT---GD----IDSFRDVVKGCPAPVVVAGGPK---------------------------TNTDEEFLQ 221 (273)
T ss_dssp HHTTCSEEEECCC---SS----HHHHHHHHHHCSSCEEEECCSC---------------------------CSSHHHHHH
T ss_pred HHcCCCEEEECCC---CC----HHHHHHHHHhCCCCEEEEeCCC---------------------------CCCHHHHHH
Confidence 9999999999852 22 2444444432 22222222221 013778888
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHh
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~ 226 (254)
.++..+++||+.|++ ++.++.+.. + ...+.++.+
T Consensus 222 ~~~~~~~~Ga~gv~v-g~~i~~~~~-~-~~~~~~l~~ 255 (273)
T 2qjg_A 222 MIKDAMEAGAAGVAV-GRNIFQHDD-V-VGITRAVCK 255 (273)
T ss_dssp HHHHHHHHTCSEEEC-CHHHHTSSS-H-HHHHHHHHH
T ss_pred HHHHHHHcCCcEEEe-eHHhhCCCC-H-HHHHHHHHH
Confidence 899999999999999 888887642 2 334444443
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=85.55 E-value=0.74 Score=40.46 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHc--CCc
Q 025344 72 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSA--GLK 145 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~--G~~ 145 (254)
-.+-++.++++|+.+.|| |.-|+.- +.++|+|+|-+ .|.+. =..+|+.++.- ...
T Consensus 116 ~~~vi~~~~~~gi~~ipGv~TptEi~~-------------A~~~Gad~vK~------FPa~~~gG~~~lkal~~p~p~ip 176 (232)
T 4e38_A 116 NPNTVRACQEIGIDIVPGVNNPSTVEA-------------ALEMGLTTLKF------FPAEASGGISMVKSLVGPYGDIR 176 (232)
T ss_dssp CHHHHHHHHHHTCEEECEECSHHHHHH-------------HHHTTCCEEEE------CSTTTTTHHHHHHHHHTTCTTCE
T ss_pred CHHHHHHHHHcCCCEEcCCCCHHHHHH-------------HHHcCCCEEEE------CcCccccCHHHHHHHHHHhcCCC
Confidence 345566777777777776 4555442 35789999977 22222 14677777662 233
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc----CCCccHHHH
Q 025344 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH----ADSLRADII 221 (254)
Q Consensus 146 v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~----~g~~r~d~i 221 (254)
+.|.=|+ + .+.+...|++||..+.+ +.-++.. +|+| +.|
T Consensus 177 ~~ptGGI------------------------------~----~~n~~~~l~aGa~~~vg-Gs~l~~~~~i~~~~~--~~i 219 (232)
T 4e38_A 177 LMPTGGI------------------------------T----PSNIDNYLAIPQVLACG-GTWMVDKKLVTNGEW--DEI 219 (232)
T ss_dssp EEEBSSC------------------------------C----TTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCH--HHH
T ss_pred eeeEcCC------------------------------C----HHHHHHHHHCCCeEEEE-CchhcChHHhhcCCH--HHH
Confidence 3333333 1 34577789999999888 6666654 4653 444
Q ss_pred HHHH
Q 025344 222 AKVI 225 (254)
Q Consensus 222 ~~ii 225 (254)
.+.+
T Consensus 220 ~~~a 223 (232)
T 4e38_A 220 ARLT 223 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=3.9 Score=36.10 Aligned_cols=62 Identities=3% Similarity=-0.043 Sum_probs=40.2
Q ss_pred EEeecCccccc-------CChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcC-CCEEEecCC
Q 025344 56 GLKFSGGSHSL-------MPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVG-FDTIELNVG 123 (254)
Q Consensus 56 ~lKfg~GT~~l-------~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lG-F~~IEISdG 123 (254)
++=+.++|-.. .+.+.+.+.++-.++. ++++.- .+| ....+.++.+.+.+.| .+.|-+++.
T Consensus 125 ~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~-------~~~~~~~~a~~~~~aG~~d~i~v~~~ 197 (314)
T 2e6f_A 125 LLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-------DIAHFDTAAAVLNEFPLVKFVTCVNS 197 (314)
T ss_dssp EEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCC-------CHHHHHHHHHHHHTCTTEEEEEECCC
T ss_pred eEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCC-------CHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 66666653322 2445577777777765 554432 122 1125777888999999 999999997
Q ss_pred c
Q 025344 124 S 124 (254)
Q Consensus 124 t 124 (254)
+
T Consensus 198 ~ 198 (314)
T 2e6f_A 198 V 198 (314)
T ss_dssp E
T ss_pred C
Confidence 7
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.27 E-value=2.3 Score=38.41 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 34 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpVi--aGv----------------------- 88 (316)
T 3e96_A 34 HYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVV--AGI----------------------- 88 (316)
T ss_dssp HHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEE-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEE--EEe-----------------------
Confidence 68888999999999999776543 589999999999998873 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCCCccHHHHHHHHhccCC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+. +..+-|++++..-++|||.|++=.- -+|+..-++..+.+.++. +.|
T Consensus 89 ----g~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La-~~p- 161 (316)
T 3e96_A 89 ----GY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLA-PLQ- 161 (316)
T ss_dssp ----CS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHT-TCT-
T ss_pred ----Cc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH-cCC-
Confidence 11 4778899999999999999998531 136643356677777775 333
Q ss_pred CceE--Eec-CCchhHHHHHHHhC
Q 025344 231 EKTM--FEA-TNPRTSEWFIRRYG 251 (254)
Q Consensus 231 ~kli--fEA-P~k~qQ~~~I~~~G 251 (254)
+|+ =|+ ++-.+...+++..+
T Consensus 162 -nIvgiKdssgd~~~~~~~~~~~~ 184 (316)
T 3e96_A 162 -NLVGVKYAINDLPRFAKVVRSIP 184 (316)
T ss_dssp -TEEEEEECCCCHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCCHHHHHHHHHhcC
Confidence 232 133 34445555555444
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=85.24 E-value=4.9 Score=35.72 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 23 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvi--aGv---------------------- 78 (292)
T 3daq_A 23 EALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVI--AGT---------------------- 78 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC----------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEE--EeC----------------------
Confidence 368889999999999999665333 478999999999999883 1 1111 122
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 79 -----g~~~t~~ai~la~~a~~~Gadavlv~~ 105 (292)
T 3daq_A 79 -----GTNDTEKSIQASIQAKALGADAIMLIT 105 (292)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -----CcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 112478889999999999999999876
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=85.19 E-value=21 Score=32.12 Aligned_cols=164 Identities=10% Similarity=0.118 Sum_probs=95.6
Q ss_pred hhHHHHHHHhhcccc--cEEeecCcccccCChh-HHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 40 HNVLEDIFESMGQFV--DGLKFSGGSHSLMPKP-FIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 40 ~~~~~DlLe~ag~yI--D~lKfg~GT~~l~~~~-~l~eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+..++.+|+.|-+.= =+|-++-|+...++.+ ...--..++++++|+|.. |. + .+.+..|-+
T Consensus 28 ~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHlDHg~-----------~-~e~i~~ai~ 95 (286)
T 1gvf_A 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE-----------S-LDDIRRKVH 95 (286)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEEC-----------C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEcCCCC-----------C-HHHHHHHHH
Confidence 445555555442210 1455555554444422 233334456667777764 31 1 255666778
Q ss_pred cCCCEEEecCCcccCChh--HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~--~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.||+.|=|.-...++.+- .=.++++++...|.-|--|+|.=-+. +-+...+.. +..+| ||++..+.
T Consensus 96 ~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~-ed~~~~~~~-~~~~T----------~Peea~~F 163 (286)
T 1gvf_A 96 AGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGV-EDDMSVDAE-SAFLT----------DPQEAKRF 163 (286)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-------------CCSSC----------CHHHHHHH
T ss_pred cCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-ccCcccccc-cccCC----------CHHHHHHH
Confidence 999999887665443322 12467888999999999999983211 100000000 01123 67776666
Q ss_pred HHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 191 AERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+++ -|.|.+=+== -|.|..+-.++.|.+++|-+.+++
T Consensus 164 v~~---TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~v 203 (286)
T 1gvf_A 164 VEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 203 (286)
T ss_dssp HHH---HCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCS
T ss_pred HHH---HCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcCC
Confidence 653 6888654422 289998888999999999888763
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=85.17 E-value=6.6 Score=35.42 Aligned_cols=109 Identities=9% Similarity=0.111 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC---CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG---LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G---~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- ..|+ +|+
T Consensus 33 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv----------------------- 87 (318)
T 3qfe_A 33 SQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIM--AGV----------------------- 87 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEE--EEC-----------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-----------------------
Confidence 67888899999999999776543 3699999999999998831 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc--CCCccHHHHHHHHhccCCCceEEecCC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~--~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
+..+..+.|++++..-++|||-|++=.--.|.. +.+---+-...|++..++-=++.--|.
T Consensus 88 ----g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~ 149 (318)
T 3qfe_A 88 ----GAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPG 149 (318)
T ss_dssp ----CCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCc
Confidence 112478889999999999999999855433321 111112233455566666666666664
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=85.06 E-value=5.6 Score=40.28 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
.+++++.+.+.|.+.|-|.+..-++ +.-...|+.+++.|..|. +.+... .++ .|+. + ..-
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n~l--~~l~~~i~~ak~~G~~v~--~~i~~~-~d~---~dp~--------r----~~~ 258 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLNYL--PNMLLGMEAAGSAGGVVE--AAISYT-GDV---ADPS--------R----TKY 258 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCH--HHHHHHHHHHHTTTSEEE--EEEECC-SCT---TCTT--------C----CTT
T ss_pred hHHHHHHHHhcCcCEEEEEecHHHH--HHHHHHHHHHHHcCCeEE--EEEEee-ccc---cCCC--------C----CCC
Confidence 6899999999999999999866543 456678999999996543 444321 011 1211 0 011
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
|++.+++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 259 ~~e~~~~~a~~l~~~Ga~~I-----~l~DT~G~~~P~~v~~lV~~l 299 (718)
T 3bg3_A 259 SLQYYMGLAEELVRAGTHIL-----CIKDMAGLLKPTACTMLVSSL 299 (718)
T ss_dssp CHHHHHHHHHHHHHHTCSEE-----EEECTTSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EEcCcCCCcCHHHHHHHHHHH
Confidence 68999999999999999866 468999999988887777544
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=85.05 E-value=13 Score=31.00 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=92.0
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC----hhHHHHHHHHHHhC--Cceec--CC-cH-
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQH--DVYVS--TG-DW- 91 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~----~~~l~eKi~l~~~~--gV~v~--~G-tl- 91 (254)
+..|+|.+++.|.+ +...+.+++.+..|=+ +..+.|.+.... ++.+++.-+++.++ .+.-. .| .+
T Consensus 29 ~~~Gv~~~v~~~~~----~~~~~~~~~l~~~~~~-~~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~~~iGEiGld~~ 103 (259)
T 1zzm_A 29 AQAGVGKIIVPATE----AENFARVLALAENYQP-LYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLF 103 (259)
T ss_dssp HHTTEEEEEEECCS----GGGHHHHHHHHHHCTT-EEEEECCCGGGGGGCCHHHHHHHHHHHHHCCSSEEEEEEEEEECC
T ss_pred HHcCCCEEEEecCC----HHHHHHHHHHHHhCCC-eEEEEEecccccccCCHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 35799999988863 4566777777777766 666777654332 23355555566552 22111 01 11
Q ss_pred --HH-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 92 --AE-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 92 --~E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
.+ ...+.. .|...++.|+++|...+ |-.+. ..+ ++++.+++.++.+ -++-... -|
T Consensus 104 ~~~~~~~~q~~--~f~~~~~~a~~~~~Pv~-iH~~~---a~~---~~~~il~~~~~~~---~~i~H~~--~g-------- 161 (259)
T 1zzm_A 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVI-LHSRR---THD---KLAMHLKRHDLPR---TGVVHGF--SG-------- 161 (259)
T ss_dssp SSCCCHHHHHH--HHHHHHHHHHHTTCCEE-EEEES---CHH---HHHHHHHHHCCTT---CEEETTC--CS--------
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCcEE-EEecc---cHH---HHHHHHHhcCCCC---CEEEEcC--CC--------
Confidence 00 122333 68899999999998865 33322 233 4455555544321 0111110 00
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+.+++.++.|.+.-+ -+.-.|.+. ..+.++++.+|++||+||..-|
T Consensus 162 --------------~----~~~~~~~~~~g~~i~~-~g~~~~~~~-----~~~~~~~~~~~~dril~eTD~P 209 (259)
T 1zzm_A 162 --------------S----LQQAERFVQLGYKIGV-GGTITYPRA-----SKTRDVIAKLPLASLLLETDAP 209 (259)
T ss_dssp --------------C----HHHHHHHHHTTCEEEE-CGGGGCTTT-----CSHHHHHHHSCGGGEEECCCBT
T ss_pred --------------C----HHHHHHHHHCCCEEEE-Cceeecccc-----HHHHHHHHhCCHHHEEEecCCC
Confidence 1 3456666778866544 121112222 3366788889999999998754
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.02 E-value=3.4 Score=37.98 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+......|+ +|+ | .
T Consensus 48 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpVi--aGv-------g--~--------------- 101 (344)
T 2hmc_A 48 ALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVI--VGT-------G--A--------------- 101 (344)
T ss_dssp HHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEE--Eec-------C--C---------------
Confidence 5777888888889999877544 347999999999998333223333 333 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHh-ccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG-RLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~-~l~~~klifEAP 238 (254)
.+..+.|++++..-++|||.|++=.--.+. ..-+---+-...|++ ..++-=++.--|
T Consensus 102 ---~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 102 ---VNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp ---SSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 147788999999999999999987653332 111111222345666 666666777777
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=84.72 E-value=5.2 Score=32.81 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=64.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.+...+..++.- .|++ ++.+. + .+-++.+|++|+++.+|.. . .+-+..+.++|.+.|
T Consensus 72 ~~~~~~~a~~~G---ad~i-v~~~~----~----~~~~~~~~~~g~~vi~g~~----------t-~~e~~~a~~~Gad~v 128 (205)
T 1wa3_A 72 SVEQCRKAVESG---AEFI-VSPHL----D----EEISQFCKEKGVFYMPGVM----------T-PTELVKAMKLGHTIL 128 (205)
T ss_dssp SHHHHHHHHHHT---CSEE-ECSSC----C----HHHHHHHHHHTCEEECEEC----------S-HHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHcC---CCEE-EcCCC----C----HHHHHHHHHcCCcEECCcC----------C-HHHHHHHHHcCCCEE
Confidence 344555555544 4555 66553 3 3567788999999999731 1 112446688999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
-+.... ....+.++.+++. ...+...=|+ + .+.+...++
T Consensus 129 k~~~~~-----~~g~~~~~~l~~~~~~~pvia~GGI------------------------------~----~~~~~~~~~ 169 (205)
T 1wa3_A 129 KLFPGE-----VVGPQFVKAMKGPFPNVKFVPTGGV------------------------------N----LDNVCEWFK 169 (205)
T ss_dssp EETTHH-----HHHHHHHHHHHTTCTTCEEEEBSSC------------------------------C----TTTHHHHHH
T ss_pred EEcCcc-----ccCHHHHHHHHHhCCCCcEEEcCCC------------------------------C----HHHHHHHHH
Confidence 875421 1234566666552 1222222222 1 134566789
Q ss_pred cCCcEEEEecccccc
Q 025344 197 AGADMIMIDSDDVCK 211 (254)
Q Consensus 197 AGA~~ViiEargi~d 211 (254)
+||+.|.+ ++.++.
T Consensus 170 ~Ga~~v~v-Gs~i~~ 183 (205)
T 1wa3_A 170 AGVLAVGV-GSALVK 183 (205)
T ss_dssp HTCSCEEE-CHHHHC
T ss_pred CCCCEEEE-CccccC
Confidence 99999988 455666
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=84.45 E-value=5.4 Score=37.44 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCEEEec--------------CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 104 KEYVEDCKQVGFDTIELN--------------VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS--------------dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+.++.++++|+++|-|- .|. -+.+.-+.++++|+++||+|+--|+..+...++++
T Consensus 51 ~d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~--~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~-------- 120 (399)
T 1ur4_A 51 QDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGN--NDLEKAIQIGKRATANGMKLLADFHYSDFWADPAK-------- 120 (399)
T ss_dssp CCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTC--CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSC--------
T ss_pred chHHHHHHHCCCCEEEEeeecCCcccccCccCCCC--CCHHHHHHHHHHHHHCCCEEEEEeccCCccCCccc--------
Confidence 356788899999999981 122 34677788999999999999999988655444432
Q ss_pred ccccCCCccccccCHHHHH--------HHHHHHHHcCCcEEEEec
Q 025344 170 YVARAPRSTEYVEDVDLLI--------RRAERCLEAGADMIMIDS 206 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i--------~~~~~dLeAGA~~ViiEa 206 (254)
-..|..|... +.+++. +.+++..++|+..-|++-
T Consensus 121 Q~~P~aW~~~---~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqv 162 (399)
T 1ur4_A 121 QKAPKAWANL---NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 162 (399)
T ss_dssp CCCCGGGTTC---CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCccccccC---CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 1235567531 233222 234455578877666643
|
| >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=5.1 Score=36.54 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcc-c--CC----hhHHHHHHHHHHHcCCcccc
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSL-E--IP----EETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti-~--i~----~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+-.+.+.++.++++||+.||+++.-+ . .+ .+...++-+.+++.|+++.+
T Consensus 31 ~~~~~~e~l~~aa~~G~~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~ 87 (393)
T 1xim_A 31 TALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPM 87 (393)
T ss_dssp CCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCE
T ss_pred CCCCHHHHHHHHHHhCCCEEEeecccCCCccccccccHHHHHHHHHHHHHhCCEEEE
Confidence 334788999999999999999983221 1 12 45677888889999999754
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=84.13 E-value=3.9 Score=36.76 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------------------- 84 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTT------------------------- 84 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEec-------------------------
Confidence 57778888888999998774332 4799999999999998831 010000111
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+..+.|++++..-++|||-|++=.
T Consensus 85 --g~~~t~~ai~la~~A~~~Gadavlv~~ 111 (309)
T 3fkr_A 85 --SHYSTQVCAARSLRAQQLGAAMVMAMP 111 (309)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred --CCchHHHHHHHHHHHHHcCCCEEEEcC
Confidence 112478889999999999999999853
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=84.03 E-value=14 Score=34.25 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=87.6
Q ss_pred chhHHHHHHHhhcc--cccEEeecCcccccCChhHHHHHHHHHHhC-Cc-eecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~--yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
....+..+++.+.+ -|.-+-|.+|--.+.+.+.|.+.++.+++. ++ .+.-+|-.=+.+-+- --+++++.+++.
T Consensus 146 s~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~--it~e~l~~L~~~- 222 (416)
T 2a5h_A 146 PMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQR--ITPELVNMLKKY- 222 (416)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGG--CCHHHHHHHGGG-
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCHHHHHHHHHHHHhcCCccEEEEEeccccccccc--CCHHHHHHHHhc-
Confidence 45677777776554 367789999999999987899999999987 44 233233110011010 125677777777
Q ss_pred CCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHH
Q 025344 115 FDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 115 F~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
+.|-||- +.-.|. ++..+.|+++++.|+.+....-+-.+ + . | +.+.+.+.+
T Consensus 223 -~~v~Isl~~~~~~ei~-~~v~~ai~~L~~aGi~v~i~~vll~G---v--N-d------------------~~e~l~~l~ 276 (416)
T 2a5h_A 223 -HPVWLNTHFNHPNEIT-EESTRACQLLADAGVPLGNQSVLLRG---V--N-D------------------CVHVMKELV 276 (416)
T ss_dssp -CSEEEEECCCSGGGCC-HHHHHHHHHHHHTTCCEEEEEECCTT---T--T-C------------------SHHHHHHHH
T ss_pred -CcEEEEEecCCHHHHh-HHHHHHHHHHHHcCCEEEEEEEEECC---C--C-C------------------CHHHHHHHH
Confidence 5555542 333555 67779999999999876554433111 1 1 1 355667777
Q ss_pred HHHHHcCCcEEEEec
Q 025344 192 ERCLEAGADMIMIDS 206 (254)
Q Consensus 192 ~~dLeAGA~~ViiEa 206 (254)
+...+.|+....+.-
T Consensus 277 ~~l~~lgv~~~~i~~ 291 (416)
T 2a5h_A 277 NKLVKIRVRPYYIYQ 291 (416)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCceEEEee
Confidence 777789988765553
|
| >3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A | Back alignment and structure |
|---|
Probab=83.75 E-value=5 Score=36.12 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=57.1
Q ss_pred cchhHHHHHHHhhccccc----------EEeecCcccc-------cCChhHHHHHHHHHHhCCc---eecC-CcHHHHHH
Q 025344 38 SSHNVLEDIFESMGQFVD----------GLKFSGGSHS-------LMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLI 96 (254)
Q Consensus 38 ~g~~~~~DlLe~ag~yID----------~lKfg~GT~~-------l~~~~~l~eKi~l~~~~gV---~v~~-Gtl~E~a~ 96 (254)
+|..+.+.+|...-.+|. ++|++.|-.. ..| ++.-|+++++-|+ ++|| ||+--
T Consensus 122 tgag~trg~L~~~~T~VNaLVSPTG~~G~VkISTGp~Sas~~~~~~V~---vetAiaml~dmG~~SvKffPM~Gl~~--- 195 (275)
T 3m6y_A 122 PSVGATRANLGEKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVP---IKTAIALVRDMGGNSLKYFPMKGLAH--- 195 (275)
T ss_dssp GGHHHHHHHHTTCCCEEEEEEBCCSSTTEEECCCSTTGGGSSSCCEEE---HHHHHHHHHHHTCCEEEECCCTTTTT---
T ss_pred cchHHHHhhcCCCccEEEEEEcCCCCcceEEeccCCCccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCccc---
Confidence 466677777765445543 5677777322 333 5667777777665 6777 54310
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc-cccee
Q 025344 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKF 150 (254)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~-v~~E~ 150 (254)
.+.+...-+.|.+-|| ++|=.-| |+.+...++++.+.+.|-+ |+|.+
T Consensus 196 ---leEl~avAkAca~~g~-~lEPTGG---Idl~Nf~~I~~i~l~aGv~~viPHI 243 (275)
T 3m6y_A 196 ---EEEYRAVAKACAEEGF-ALEPTGG---IDKENFETIVRIALEANVEQVIPHV 243 (275)
T ss_dssp ---HHHHHHHHHHHHHHTC-EEEEBSS---CCTTTHHHHHHHHHHTTCSCBCCEE
T ss_pred ---HHHHHHHHHHHHHcCc-eECCCCC---ccHhHHHHHHHHHHHcCCCeecccc
Confidence 0023333456667777 7776544 4445555666666666654 55554
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=15 Score=34.77 Aligned_cols=75 Identities=9% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHH---HhhcccccEEeecCcc------cccCChhHHHHHHHHHHhC---------------------Cce-----ec
Q 025344 43 LEDIF---ESMGQFVDGLKFSGGS------HSLMPKPFIEEVVKRAHQH---------------------DVY-----VS 87 (254)
Q Consensus 43 ~~DlL---e~ag~yID~lKfg~GT------~~l~~~~~l~eKi~l~~~~---------------------gV~-----v~ 87 (254)
.+|++ +...+|.|++=+=.+| ..+..++.|.+.++-.++. .++ +.
T Consensus 198 ~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~ 277 (415)
T 3i65_A 198 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA 277 (415)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEec
Confidence 45554 4456778887766554 3456777777777766553 333 34
Q ss_pred CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 025344 88 TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (254)
Q Consensus 88 ~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (254)
|+ |- . +.+.+..+.|.+.|.|.|-++|.+.
T Consensus 278 pd-~~-----~--~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 278 PD-LN-----Q--EQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp SC-CC-----H--HHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CC-CC-----H--HHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 44 20 1 1578888999999999999999886
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=83.37 E-value=2.9 Score=34.31 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=56.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+....++++..++++|++|+|++.+.-...+.+++.- +.+ ++++..+--+ .+ --+.|++.+.+.|.|.
T Consensus 11 ~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~---~~~~~~~i~~~l~~-----~d--i~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVK---KAHPDKIVFADMKT-----MD--AGELEADIAFKAGADL 80 (207)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHH---HHSTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHH---HhCCCCeEEEEEEe-----cC--ccHHHHHHHHhCCCCE
Confidence 45788889999999999999999865334444444322 223 5544432000 01 1244667778888888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
|-|+.+.- .+.-.++++.+++.|..
T Consensus 81 v~vh~~~~---~~~~~~~~~~~~~~g~~ 105 (207)
T 3ajx_A 81 VTVLGSAD---DSTIAGAVKAAQAHNKG 105 (207)
T ss_dssp EEEETTSC---HHHHHHHHHHHHHHTCE
T ss_pred EEEeccCC---hHHHHHHHHHHHHcCCc
Confidence 87766543 23344566666666655
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=6 Score=36.82 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=66.0
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-Ccccceeee
Q 025344 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAV 152 (254)
Q Consensus 79 ~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~ 152 (254)
.+-.||.+..=|.|----.=+.+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 58 ~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv 135 (360)
T 4dpp_A 58 IKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVI--GNT 135 (360)
T ss_dssp HHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EEC
T ss_pred cccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEE--Eec
Confidence 3555775554443310001112267888899999999999884332 489999999999998873 1 1111 122
Q ss_pred ecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 153 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 153 k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
| ..+..+.|+.++..-++|||-|++=.
T Consensus 136 -------g--------------------~~st~eai~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 136 -------G--------------------SNSTREAIHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp -------C--------------------CSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred -------C--------------------CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1 12478889999999999999999865
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=83.21 E-value=11 Score=34.71 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+.++.++.++..-++|+++|-+=++...... ....+.+..|-+.++
T Consensus 249 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-~~~~~~~~~v~~~~~ 294 (364)
T 1vyr_A 249 EEADALYLIEELAKRGIAYLHMSETDLAGGK-PYSEAFRQKVRERFH 294 (364)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCBTTBCC-CCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCcccCCC-cccHHHHHHHHHHCC
Confidence 5677888888888999999988765321111 123455565655554
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=82.97 E-value=12 Score=33.56 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.+.++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+.-= ++.-=+|+
T Consensus 28 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGv------------------------ 83 (311)
T 3h5d_A 28 DAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGV------------------------ 83 (311)
T ss_dssp THHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC------------------------
Confidence 4788999999999999998865543 7999999999999988410 00000111
Q ss_pred ccccccCHHHHHHHHHHHHHcCC-cEEEEec
Q 025344 177 STEYVEDVDLLIRRAERCLEAGA-DMIMIDS 206 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA-~~ViiEa 206 (254)
+..+..+.|++++..-++|| |-|++=.
T Consensus 84 ---g~~~t~~ai~la~~A~~~Ga~davlv~~ 111 (311)
T 3h5d_A 84 ---GTNDTRDSIEFVKEVAEFGGFAAGLAIV 111 (311)
T ss_dssp ---CCSSHHHHHHHHHHHHHSCCCSEEEEEC
T ss_pred ---CCcCHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 11247888999999999997 9998866
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=82.88 E-value=2.3 Score=35.70 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=49.1
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--Cceec--------CCcHHHHHHHhCC--------
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVS--------TGDWAEHLIRNGP-------- 100 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~--------~Gtl~E~a~~qg~-------- 100 (254)
.+....++++.+++|+|++|+|.|-+.-+..+.+++. +++ |..++ |.|+.|.+..-|-
T Consensus 14 ~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~~~i~~l----~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~ 89 (216)
T 1q6o_A 14 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDL----KALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC 89 (216)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHH----HHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhcccCCEEEECHHHHHHhCHHHHHHH----HHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEecc
Confidence 4577888899999999999999987755555555443 333 44433 3466665544431
Q ss_pred ---chHHHHHHHHHHcCCCE-EEec
Q 025344 101 ---SAFKEYVEDCKQVGFDT-IELN 121 (254)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~-IEIS 121 (254)
+.+.++++.+++.|..+ +.+.
T Consensus 90 ~g~~~l~~~~~~~~~~g~~~~~~ll 114 (216)
T 1q6o_A 90 ADINTAKGALDVAKEFNGDVQIELT 114 (216)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCceeeee
Confidence 12556666666666554 3443
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=16 Score=33.81 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=94.3
Q ss_pred HHHHHHhhcccccEEeecCcccccCCh----------hHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHH
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPK----------PFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~----------~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
++..+++ =+|.+-+-..+|-++.+ +.+++-++.++++| +.+... +|.+...+++.+-+.++.+
T Consensus 80 i~~a~~~---g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 80 AKVAVET---GVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHHHHT---TCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHc---CCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHH
Confidence 4444443 35666665555543321 44788899999999 765542 1223344445677778888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+. .+.|=|.|-.--+.+.+-.++|+.+++. +.+...+++-+ +. |...-+..
T Consensus 155 ~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~-~~~~~~i~~H~-Hn-------------------------d~GlAvAN 206 (382)
T 2ztj_A 155 APY-VDRVGLADTVGVATPRQVYALVREVRRV-VGPRVDIEFHG-HN-------------------------DTGCAIAN 206 (382)
T ss_dssp GGG-CSEEEEEETTSCCCHHHHHHHHHHHHHH-HTTTSEEEEEE-BC-------------------------TTSCHHHH
T ss_pred HHh-cCEEEecCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEe-CC-------------------------CccHHHHH
Confidence 889 9999998888788888888999998883 00112244421 11 23334778
Q ss_pred HHHHHHcCCcEEEEecccccccCCCccHHHHH
Q 025344 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIA 222 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~ 222 (254)
+...++|||+.|=.=-.|+=...||...+.+-
T Consensus 207 ~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 207 AYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp HHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred HHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 88889999996544345888899999988665
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=82.75 E-value=13 Score=34.05 Aligned_cols=46 Identities=9% Similarity=-0.088 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+.++.++.++..-++|+++|-+=++.. +..-....+.+..+-+.++
T Consensus 248 ~~~~~~~~a~~l~~~G~d~i~v~~~~~-~~~~~~~~~~~~~i~~~~~ 293 (365)
T 2gou_A 248 PILTYTAAAALLNKHRIVYLHIAEVDW-DDAPDTPVSFKRALREAYQ 293 (365)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCBT-TBCCCCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCc-CCCCCccHHHHHHHHHHCC
Confidence 467888889998899999999866532 1111122355666655554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=82.74 E-value=23 Score=30.71 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=63.0
Q ss_pred hHHHHHHHhhccc-ccEEeecCccc-ccCChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHHhC
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~-~l~~~~~l~-----------------eKi~l~~~~--gV~v~~Gtl~E~a~~qg 99 (254)
..+.++++..-+. +|.+-+|.=-+ .+++-..+. +-++-.+++ ++++-.=+...-++..
T Consensus 31 ~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~- 109 (268)
T 1qop_A 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNN- 109 (268)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHh-
Confidence 4555555554444 99999986221 223333444 445555655 3332110223334444
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++|++.|.+.|.+.|=+.| ++.++..++++.++++|+++.+
T Consensus 110 --g~~~~~~~~~~aGadgii~~d----~~~e~~~~~~~~~~~~g~~~i~ 152 (268)
T 1qop_A 110 --GIDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIF 152 (268)
T ss_dssp --CHHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEEC
T ss_pred --hHHHHHHHHHHcCCCEEEEcC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 479999999999999888864 4457778999999999987644
|
| >3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A | Back alignment and structure |
|---|
Probab=82.70 E-value=5.4 Score=35.49 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCcEEEEecc-ccc-ccCCCccHHHHHHHHh
Q 025344 187 LIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIG 226 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEar-gi~-d~~g~~r~d~i~~ii~ 226 (254)
+-+-.+-||+||+.+||=-== .|. ...|+-|.+.+.+|+.
T Consensus 201 ~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~ 242 (249)
T 3m0z_A 201 YSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLE 242 (249)
T ss_dssp HHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHH
Confidence 344455556666666552221 233 2346666666666654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=82.58 E-value=4.2 Score=37.81 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
...++++.+.+.|++.|+|. .|. + +.-.+.|+.+++. +..|.. ++ + .
T Consensus 100 ~~~e~~~~a~~aGvdvI~id~a~G~---~-~~~~e~I~~ir~~~~~~~Vi~----G~----V-----------~------ 150 (361)
T 3r2g_A 100 NELQRAEALRDAGADFFCVDVAHAH---A-KYVGKTLKSLRQLLGSRCIMA----GN----V-----------A------ 150 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCS---S-HHHHHHHHHHHHHHTTCEEEE----EE----E-----------C------
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC---c-HhHHHHHHHHHHhcCCCeEEE----cC----c-----------C------
Confidence 46678899999999999994 553 2 2334678888875 333322 10 1 1
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+ .+.++...++|||.|.+
T Consensus 151 -----T----~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 151 -----T----YAGADYLASCGADIIKA 168 (361)
T ss_dssp -----S----HHHHHHHHHTTCSEEEE
T ss_pred -----C----HHHHHHHHHcCCCEEEE
Confidence 2 45688889999999998
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=82.52 E-value=12 Score=33.24 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=61.6
Q ss_pred ccEEee-cCcccccCChhHHHHHHHHHHhCCceec--C-CcHHHHHHHhCCchHHHHHHHHHHcC--CCEEEecCCccc-
Q 025344 54 VDGLKF-SGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVG--FDTIELNVGSLE- 126 (254)
Q Consensus 54 ID~lKf-g~GT~~l~~~~~l~eKi~l~~~~gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lG--F~~IEISdGti~- 126 (254)
++.+-| |+|...++| .+.+.++.++++|+.+. + |++ ++.++.+++.| .+.|-||=-+.+
T Consensus 142 ~~~v~~sggGEPll~~--~l~~ll~~~~~~g~~i~l~TNG~~------------~e~l~~L~~~g~~~~~l~isld~~~~ 207 (342)
T 2yx0_A 142 PTHAAISLSGEPMLYP--YMGDLVEEFHKRGFTTFIVTNGTI------------PERLEEMIKEDKLPTQLYVSITAPDI 207 (342)
T ss_dssp CCEEEECSSSCGGGST--THHHHHHHHHHTTCEEEEEECSCC------------HHHHHHHHHTTCCCSEEEEEECCSSH
T ss_pred CCEEEEcCCCcccchh--hHHHHHHHHHHCCCcEEEEcCCCc------------HHHHHHHHhcCCCCCEEEEEccCCCH
Confidence 566888 588888887 39999999999997544 4 443 45566778877 899999854431
Q ss_pred ------------CChhHHHHHHHHHHHcCCcccceeee
Q 025344 127 ------------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 127 ------------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
-+.+...+.|+.+++.|+.+..++-+
T Consensus 208 e~~~~i~~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~l 245 (342)
T 2yx0_A 208 ETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVRLTL 245 (342)
T ss_dssp HHHHHHHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 12566678888888888876666655
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=82.40 E-value=7.7 Score=41.22 Aligned_cols=102 Identities=19% Similarity=0.144 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
..+++++.+.+.|.+.|-|.+..-+ .+.-...|+.+++.|..| ++.+.... .+ .|+ ++ +.
T Consensus 646 ~~~~~i~~a~~~g~d~irif~sl~~--~~~~~~~i~~~~~~g~~v--~~~i~~~~-~~---~d~--------~r----~~ 705 (1165)
T 2qf7_A 646 VVKYFVRQAAKGGIDLFRVFDCLNW--VENMRVSMDAIAEENKLC--EAAICYTG-DI---LNS--------AR----PK 705 (1165)
T ss_dssp HHHHHHHHHHHHTCCEEEEECTTCC--GGGGHHHHHHHHHTTCEE--EEEEECCS-CT---TCT--------TS----GG
T ss_pred hHHHHHHHHHhcCcCEEEEEeeHHH--HHHHHHHHHHHHhccceE--EEEEEEec-cc---cCC--------CC----CC
Confidence 3578999999999999999765433 345567899999999655 44443211 11 122 11 12
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 706 ~~~~~~~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~~~~lv~~l 747 (1165)
T 2qf7_A 706 YDLKYYTNLAVELEKAGAHII-----AVKDMAGLLKPAAAKVLFKAL 747 (1165)
T ss_dssp GCHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EEeCccCCcCHHHHHHHHHHH
Confidence 369999999999999999966 478999999998888887654
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=81.98 E-value=9.9 Score=33.90 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHc--CCCEEEecCCcccCC-------hhHHHHHHHHHHHc--------CCcccceeeeecCCCCCCCcccc
Q 025344 103 FKEYVEDCKQV--GFDTIELNVGSLEIP-------EETLLRYVRLVKSA--------GLKAKPKFAVMFNKSDIPSDRDR 165 (254)
Q Consensus 103 ~~~yl~~~k~l--GF~~IEISdGti~i~-------~~~r~~lI~~~~~~--------G~~v~~E~g~k~~~s~v~~~~d~ 165 (254)
.++|.+.++.+ |||+|||+-++=..+ .+.-.++|+.+++. |- -+| +.+|-.
T Consensus 152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~-~~P-v~vKi~---------- 219 (336)
T 1f76_A 152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHK-YVP-IAVKIA---------- 219 (336)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTS-CCC-EEEECC----------
T ss_pred HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccc-cCc-eEEEec----------
Confidence 67776666533 699999986543322 22224566666653 10 012 455421
Q ss_pred ccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 025344 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg 208 (254)
+ .| +.++.++.++...++|+|.|++-.+.
T Consensus 220 -------~-~~------~~~~~~~~a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 220 -------P-DL------SEEELIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp -------S-CC------CHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred -------C-CC------CHHHHHHHHHHHHHcCCcEEEEeCCc
Confidence 1 12 35678888999999999999997653
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=81.88 E-value=5.4 Score=34.31 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCEE--EecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 105 EYVEDCKQVGFDTI--ELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 105 ~yl~~~k~lGF~~I--EISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
+-++.+.+.|++.| -+..|+. +.++ -.++++.+++.|..++.|.+.. +. . + +..+
T Consensus 103 ~~v~~a~~~Ga~~v~~~l~~~~~--~~~~~~~~~~~v~~~~~~~g~~viv~~~~~-G~-~------------l-~~~~-- 163 (273)
T 2qjg_A 103 TTVEEAIRMGADAVSIHVNVGSD--EDWEAYRDLGMIAETCEYWGMPLIAMMYPR-GK-H------------I-QNER-- 163 (273)
T ss_dssp SCHHHHHHTTCSEEEEEEEETST--THHHHHHHHHHHHHHHHHHTCCEEEEEEEC-ST-T------------C-SCTT--
T ss_pred HHHHHHHHcCCCEEEEEEecCCC--CHHHHHHHHHHHHHHHHHcCCCEEEEeCCC-Cc-c------------c-CCCC--
Confidence 44667888999999 7778865 4433 3456677777899988886531 11 1 1 1112
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+++...+.++...++|||+|.+-- ....+.+.++.+.++
T Consensus 164 ----~~~~~~~~a~~a~~~Gad~i~~~~--------~~~~~~l~~i~~~~~ 202 (273)
T 2qjg_A 164 ----DPELVAHAARLGAELGADIVKTSY--------TGDIDSFRDVVKGCP 202 (273)
T ss_dssp ----CHHHHHHHHHHHHHTTCSEEEECC--------CSSHHHHHHHHHHCS
T ss_pred ----CHhHHHHHHHHHHHcCCCEEEECC--------CCCHHHHHHHHHhCC
Confidence 344444444888999999999862 123555666655443
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=81.68 E-value=3.7 Score=37.49 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH---HHHHH-cCCcccceeeeecCCCCCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV---RLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI---~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
+-+-++.+.+.|..+|-|=|+.. -+|.++-++-| +.+++ .| +.|-+. . .-|.
T Consensus 105 v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~----~d~~I~---A----RTDa-- 171 (307)
T 3lye_A 105 VARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR----SDFVLI---A----RTDA-- 171 (307)
T ss_dssp HHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT----CCCEEE---E----EECC--
T ss_pred HHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC----CCeEEE---E----echh--
Confidence 33445666778999999999864 35677644444 44443 12 223331 0 1111
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+ .....++.|++++...+||||.|.+|+- -..+.+.+|.+.++
T Consensus 172 ---~--------~~~gldeAi~Ra~ay~eAGAD~ifi~~~--------~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 172 ---L--------QSLGYEECIERLRAARDEGADVGLLEGF--------RSKEQAAAAVAALA 214 (307)
T ss_dssp ---H--------HHHCHHHHHHHHHHHHHTTCSEEEECCC--------SCHHHHHHHHHHHT
T ss_pred ---h--------hccCHHHHHHHHHHHHHCCCCEEEecCC--------CCHHHHHHHHHHcc
Confidence 0 0125889999999999999999999973 13566777777664
|
| >2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* | Back alignment and structure |
|---|
Probab=81.67 E-value=3.4 Score=41.26 Aligned_cols=89 Identities=17% Similarity=0.324 Sum_probs=56.8
Q ss_pred cccccEEeecCccc----ccCChhHHHHHHHHHHhCCceecCCc-------------HHHHHHHhCCc----hHHHHHHH
Q 025344 51 GQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVSTGD-------------WAEHLIRNGPS----AFKEYVED 109 (254)
Q Consensus 51 g~yID~lKfg~GT~----~l~~~~~l~eKi~l~~~~gV~v~~Gt-------------l~E~a~~qg~~----~~~~yl~~ 109 (254)
=+|||..=. |+-+ .+.|+ =..=|+.||+|||+|. || |++-++.++.+ -+++.++.
T Consensus 89 W~yvD~fvy-fshs~~~~~~~~P--~~~widaAHrnGV~Vl-Gt~~fe~~~~gg~~~~~~~lL~~~~~~~~~~a~kLv~~ 164 (626)
T 2vtf_A 89 WHYTDLMVY-WAGSAGEGIIVPP--SADVIDASHRNGVPIL-GNVFFPPTVYGGQLEWLEQMLEQEEDGSFPLADKLLEV 164 (626)
T ss_dssp GGGCSEEEE-CCCBTTTBSEECC--CHHHHHHHHHTTCCEE-EEEEECCGGGTCCHHHHHHHTCCCTTCCCHHHHHHHHH
T ss_pred ccceeeeee-ecCCCccceeeCC--CcHHHHHHHHcCCEEE-EEEecCcccCCcHHHHHHHHhccCccchHHHHHHHHHH
Confidence 368897643 4222 23343 2456899999999876 33 45555544422 27999999
Q ss_pred HHHcCCCEEEecCCcccCChhHH---HHHHHHHHHcC
Q 025344 110 CKQVGFDTIELNVGSLEIPEETL---LRYVRLVKSAG 143 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r---~~lI~~~~~~G 143 (254)
|+.+|||.+=|+-=+-.++.+.. ..+++.+++.+
T Consensus 165 a~~yGFDGw~IN~E~~~~~~~~~~~l~~F~~~L~~~~ 201 (626)
T 2vtf_A 165 ADYYGFDGWFINQQTEGADEGTAEAMQAFLVYLQEQK 201 (626)
T ss_dssp HHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCceEEeeccccCCHHHHHHHHHHHHHHHHhC
Confidence 99999999888766534555443 44555555543
|
| >1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A* | Back alignment and structure |
|---|
Probab=81.66 E-value=3.8 Score=37.47 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-----CC--hhHHHHHHHHHHHcCCcccceeeeecC-----CCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE-----IP--EETLLRYVRLVKSAGLKAKPKFAVMFN-----KSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-----i~--~~~r~~lI~~~~~~G~~v~~E~g~k~~-----~s~v~~~~d~~~~~ 169 (254)
.+.+.++.++++||+.||++...+. ++ .+...++-+.+++.|+++..--..-+. ...+.+ .|++
T Consensus 34 ~l~e~l~~aa~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~-~d~~--- 109 (394)
T 1xla_A 34 DPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTS-NDRS--- 109 (394)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTC-SSHH---
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeEEEEecCccCCccccCCccCC-CCHH---
Confidence 3788899999999999999863221 11 346677888889999987642110000 001110 1110
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
......+.+.+.++..-+.||..|.+=+
T Consensus 110 ---------~r~~~i~~~~~~i~~A~~LGa~~vvv~~ 137 (394)
T 1xla_A 110 ---------IRRFALAKVLHNIDLAAEMGAETFVMWG 137 (394)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ---------HHHHHHHHHHHHHHHHHHhCCCEEEECC
Confidence 0011245556666666678999998853
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=81.58 E-value=28 Score=31.39 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=96.1
Q ss_pred chhHHHHHHHhhccc--ccEEeecCccccc-CChhHHHHHH-HHHH--hCCceecC----CcHHHHHHHhCCchHHHHHH
Q 025344 39 SHNVLEDIFESMGQF--VDGLKFSGGSHSL-MPKPFIEEVV-KRAH--QHDVYVST----GDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 39 g~~~~~DlLe~ag~y--ID~lKfg~GT~~l-~~~~~l~eKi-~l~~--~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~ 108 (254)
.+..++.+++.|-+- ==+|-++-|+... .+.+.+...+ .+++ .++|+|.. |..+|. +.
T Consensus 30 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~------------i~ 97 (288)
T 3q94_A 30 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEK------------CK 97 (288)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHH------------HH
T ss_pred CHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHH------------HH
Confidence 345555555544321 0134455444444 2444444443 3556 67777764 445553 44
Q ss_pred HHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc-cccccccCCCccccccCHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA-FGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~-~~~~~~~~~~~~~~~~d~~ 185 (254)
.|-+.||+.|=|.-...++.+- .=.++++.+...|.-|--|+|.=-+. +++.. -+..+| ||+
T Consensus 98 ~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~-----Ed~~~~~~~~yT----------~Pe 162 (288)
T 3q94_A 98 EAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQ-----EDDVIAEGVIYA----------DPA 162 (288)
T ss_dssp HHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCS-----CSSCGGGGCBCC----------CHH
T ss_pred HHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccc-----cCCcCCccccCC----------CHH
Confidence 5677899999996655544322 22378889999999999999983211 11110 011123 566
Q ss_pred HHHHHHHHHHHcCCcEEEEe---cccccccCCCccHHHHHHHHhccCC
Q 025344 186 LLIRRAERCLEAGADMIMID---SDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiE---argi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+..+.++ +-|.|.+=+= +-|.|..+-.++.|.+++|-+.++.
T Consensus 163 ea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~v 207 (288)
T 3q94_A 163 ECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGV 207 (288)
T ss_dssp HHHHHHH---HHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHH---HHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCC
Confidence 6555544 4688876553 2389987888999999999887763
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=81.48 E-value=11 Score=35.02 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=60.1
Q ss_pred CChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHH
Q 025344 67 MPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 67 ~~~~~l~eKi~l~~~~g---V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~ 141 (254)
++.+.+.+-|+..++.+ |-+..|+ . ....+.++.+.+.|.+.|+| +.| +.+...+.|+.+++
T Consensus 79 ~s~e~~~~~i~~vk~~~~l~vga~vg~-------~--~~~~~~~~~lieaGvd~I~idta~G----~~~~~~~~I~~ik~ 145 (366)
T 4fo4_A 79 MSIEQQAAQVHQVKISGGLRVGAAVGA-------A--PGNEERVKALVEAGVDVLLIDSSHG----HSEGVLQRIRETRA 145 (366)
T ss_dssp SCHHHHHHHHHHHHTTTSCCCEEECCS-------C--TTCHHHHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEecc-------C--hhHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHH
Confidence 45566888888888764 3222232 1 24677889999999999998 334 23456678888888
Q ss_pred c--CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 142 A--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 142 ~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
. +..|+. |- + . + .+.++...+||||.|.+
T Consensus 146 ~~p~v~Vi~--G~------v-----------~-----------t----~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 146 AYPHLEIIG--GN------V-----------A-----------T----AEGARALIEAGVSAVKV 176 (366)
T ss_dssp HCTTCEEEE--EE------E-----------C-----------S----HHHHHHHHHHTCSEEEE
T ss_pred hcCCCceEe--ee------e-----------C-----------C----HHHHHHHHHcCCCEEEE
Confidence 5 222221 10 0 1 1 56788889999999999
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=3 Score=37.92 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=99.6
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhh-cccccEEeecCcccccCC-hhHHHHHHHHHHh-CCcee---cC---Cc---
Q 025344 23 RFGVTEMRSPHYTLSSSHNVLEDIFESM-GQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQ-HDVYV---ST---GD--- 90 (254)
Q Consensus 23 ~~GlT~V~DkG~~~~~g~~~~~DlLe~a-g~yID~lKfg~GT~~l~~-~~~l~eKi~l~~~-~gV~v---~~---Gt--- 90 (254)
..|+-.++||-=.+ ...+..+++.+ -...|.+=+| |.-+.. ++.+.+-++.+++ +++++ .| |.
T Consensus 38 ~~~~~~liDPdK~~---~~~~~~~~~~~~~sGtDai~VG--S~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~ 112 (286)
T 3vk5_A 38 QPGPVHIIDPFKVP---VTEAVEKAAELTRLGFAAVLLA--STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFP 112 (286)
T ss_dssp CCEEEEEECTTTSC---HHHHHHHHHHHHHTTCSCEEEE--CSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSC
T ss_pred cCCceEEECCCCCC---cHHHHHHHHHHHhcCCCEEEEc--cCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCccc
Confidence 56889999997533 23433344443 4458999999 554540 4459999999999 78744 33 21
Q ss_pred --------------------H----HHHHHH---------------------h----------------CCchH--HHHH
Q 025344 91 --------------------W----AEHLIR---------------------N----------------GPSAF--KEYV 107 (254)
Q Consensus 91 --------------------l----~E~a~~---------------------q----------------g~~~~--~~yl 107 (254)
| ||+... - .++-. ..|-
T Consensus 113 i~~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa 192 (286)
T 3vk5_A 113 VVRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYL 192 (286)
T ss_dssp CCTTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHH
T ss_pred cccCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHH
Confidence 2 233311 0 12223 6899
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc---CCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA---GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~---G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
....++|+..|=+.-+.- ..-.++|+++++. ...+..-+|+. |
T Consensus 193 ~~gad~G~~lV~LD~~~~----~v~~e~V~~I~~~~~~~iPV~vGGGIr-----------------------------s- 238 (286)
T 3vk5_A 193 HVARAFGFHMVYLYSRNE----HVPPEVVRHFRKGLGPDQVLFVSGNVR-----------------------------S- 238 (286)
T ss_dssp HHHHHTTCSEEEEECSSS----CCCHHHHHHHHHHSCTTCEEEEESSCC-----------------------------S-
T ss_pred HHHHHcCCCEEEEcCCCC----cCCHHHHHHHHHhcCCCCCEEEEeCCC-----------------------------C-
Confidence 999999999998886552 2223677777764 23333334441 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.+++++.+++|||.|+|=+- ++++. -.+++.+++.+.+
T Consensus 239 ---~Eda~~ll~aGAD~VVVGSA-av~d~---~Pelv~e~a~~~~ 276 (286)
T 3vk5_A 239 ---GRQVTEYLDSGADYVGFAGA-LEQPD---WRSALAEIAGRRP 276 (286)
T ss_dssp ---HHHHHHHHHTTCSEEEESGG-GSSTT---HHHHHHHHHC---
T ss_pred ---HHHHHHHHHcCCCEEEECch-hhcCC---CHHHHHHHHHhCC
Confidence 67888899999999999664 33322 2477888886653
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=81.25 E-value=23 Score=30.84 Aligned_cols=165 Identities=11% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCCh---hHHHHHHHHHHhCCceec-CC-cHH----
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDVYVS-TG-DWA---- 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~---~~l~eKi~l~~~~gV~v~-~G-tl~---- 92 (254)
+..|+..|. .|. .+...+..++.+..| +.+..+.|-+.-+.. +.+.+..+++.+. |-+- .| .+.
T Consensus 24 ~~~gV~~i~-v~~----~~~~~~~~~~la~~~-~~v~~~~GiHP~~~~~~~~~l~~l~~~~~~~-vaIGEiGLD~~~~~~ 96 (254)
T 3gg7_A 24 EERQLTVLS-VTT----TPAAWRGTLALAAGR-PHVWTALGFHPEVVSERAADLPWFDRYLPET-RFVGEVGLDGSPSLR 96 (254)
T ss_dssp HHTTCEEEE-CCS----SGGGHHHHHGGGTTC-TTEEECBCCCGGGTTTTGGGTHHHHHHGGGC-SEEEEEECCCCGGGG
T ss_pred HHCCCcEEE-ecC----CHHHHHHHHHHHHhC-CCeEEEEeeCcccccccHHHHHHHHHHhhhc-cEEEEEecCCCcccC
Confidence 356888776 475 567999999999998 557788887664432 3355555565432 2221 13 111
Q ss_pred H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 93 E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 93 E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
. ...++. .|...++.|+++|...|-|=..- ..+ ++++.+++.+.. --++-...+ |
T Consensus 97 ~~~~~Q~~--~F~~ql~lA~e~~lPviSiH~r~---a~~---~~~~il~~~~~~---~~~v~H~fs--G----------- 152 (254)
T 3gg7_A 97 GTWTQQFA--VFQHILRRCEDHGGRILSIHSRR---AES---EVLNCLEANPRS---GTPILHWYS--G----------- 152 (254)
T ss_dssp GGHHHHHH--HHHHHHHHHHHTTCEEEEEECTT---CHH---HHHHHHHHCGGG---EEEEEETCC--S-----------
T ss_pred CCHHHHHH--HHHHHHHHHHHcCCCEEEEEcCC---cHH---HHHHHHHHcCCC---CcEEEEeCC--C-----------
Confidence 1 233444 79999999999999987332221 233 455555554211 111321111 1
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+- |..- +.+.+.++++.+|++||++|...|
T Consensus 153 -----------~----~e~a~~~l~~G~yis~~---g~~~-----~~~~~~~~v~~ip~drlLlETD~P 198 (254)
T 3gg7_A 153 -----------S----VTELRRAISLGCWFSVG---PTMV-----RTQKGAALIRSMPRDRVLTETDGP 198 (254)
T ss_dssp -----------C----HHHHHHHHHTTCEEEEC---HHHH-----TSHHHHHHHHHSCGGGEEECCCTT
T ss_pred -----------C----HHHHHHHHcCCcEEEEC---cccC-----chHHHHHHHHHcCCCeEEEeCCCC
Confidence 1 56777788888665221 2211 345678899999999999998765
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=80.77 E-value=3.2 Score=37.88 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
+-+-.+.+.+.|..+|-|=|... -+|.++-++=|+.+++.-=..-++|-+- .. -|. +
T Consensus 97 v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~---AR----TDa-----~ 164 (302)
T 3fa4_A 97 VARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVI---AR----TDS-----L 164 (302)
T ss_dssp HHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEE---EE----ECC-----H
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEE---EE----ecc-----c
Confidence 34445666678999999998764 3577766666665554200001223331 01 111 0
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.....++.|++++...+||||.|.+|+- -..+.+.+|.+.++
T Consensus 165 --------~~~gldeAi~Ra~ay~eAGAD~ifi~g~--------~~~~ei~~~~~~~~ 206 (302)
T 3fa4_A 165 --------QTHGYEESVARLRAARDAGADVGFLEGI--------TSREMARQVIQDLA 206 (302)
T ss_dssp --------HHHCHHHHHHHHHHHHTTTCSEEEETTC--------CCHHHHHHHHHHTT
T ss_pred --------ccCCHHHHHHHHHHHHHcCCCEEeecCC--------CCHHHHHHHHHHhc
Confidence 0235899999999999999999999983 13566777777663
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=80.52 E-value=4.1 Score=34.24 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSA 142 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~ 142 (254)
.++++.+.+.|.+.|.+......-|. +...++|+.+++.
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~ 130 (234)
T 1yxy_A 91 MTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEK 130 (234)
T ss_dssp HHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHh
Confidence 56788899999999998766543331 2345788888886
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=80.42 E-value=9.3 Score=36.40 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDV 209 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi 209 (254)
+.+++.+.++...++|||.|++=.+..
T Consensus 309 ~~ed~~~iA~~~~~aGaDgI~v~ntt~ 335 (443)
T 1tv5_A 309 NQEQKKEIADVLLETNIDGMIISNTTT 335 (443)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 356888999999999999999988754
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=80.27 E-value=4.7 Score=37.43 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
-++.-++.++..|.+.|-|...+-++ +.+ .-.+.|+.+++.|..| +|+-.+.
T Consensus 88 di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v--~~~~ed~-------------- 151 (370)
T 3rmj_A 88 DIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV--EFSCEDA-------------- 151 (370)
T ss_dssp HHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCE--EEEEETG--------------
T ss_pred HHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEecCCC--------------
Confidence 46666666777999998887655433 222 2335678888888764 4444211
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~ 227 (254)
+..|++.+++.++...++||+.|- |+|..|-..+..+.++++.
T Consensus 152 ----------~r~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~~ 194 (370)
T 3rmj_A 152 ----------LRSEIDFLAEICGAVIEAGATTIN-----IPDTVGYSIPYKTEEFFRE 194 (370)
T ss_dssp ----------GGSCHHHHHHHHHHHHHHTCCEEE-----EECSSSCCCHHHHHHHHHH
T ss_pred ----------CccCHHHHHHHHHHHHHcCCCEEE-----ecCccCCcCHHHHHHHHHH
Confidence 112689999999999999998664 6888898888777776643
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.07 E-value=1.8 Score=40.31 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=36.3
Q ss_pred HHHHHHcCCCEEEecC--------CcccC----------ChhHHHHHHHHHHHcCCcccceeee
Q 025344 107 VEDCKQVGFDTIELNV--------GSLEI----------PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 107 l~~~k~lGF~~IEISd--------Gti~i----------~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|+++++|||++|+++- |.-.. +.++..++|+.+.++|++|+-.+-.
T Consensus 56 LdyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~ 119 (475)
T 2z1k_A 56 LPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVF 119 (475)
T ss_dssp HHHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hHHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5677999999999973 22111 3689999999999999999877755
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=80.06 E-value=23 Score=31.47 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=62.2
Q ss_pred HHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHc----CCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 108 EDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSA----GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~----G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
+.+-+.|..+|-|=|+.. -+|.++-++-|+.+++. |.- |-++- ..|.. .. .+..
T Consensus 99 ~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~----~~i~a-------Rtda~----~~--~~g~ 161 (275)
T 2ze3_A 99 EHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVP----VFLNA-------RTDTF----LK--GHGA 161 (275)
T ss_dssp HHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSC----CEEEE-------ECCTT----TT--TCSS
T ss_pred HHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCC----eEEEE-------echhh----hc--cccc
Confidence 334458999999999873 46777777778777775 432 33320 01110 00 0000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
......++.|++++...+||||.|.+|+- ...+++.+|.+.++
T Consensus 162 ~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~ 204 (275)
T 2ze3_A 162 TDEERLAETVRRGQAYADAGADGIFVPLA--------LQSQDIRALADALR 204 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSEEECTTC--------CCHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHCCCCEEEECCC--------CCHHHHHHHHHhcC
Confidence 00013789999999999999999999973 23577888887776
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=31 Score=30.38 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred hHHHHHHHhhcccccEEeecCccc-ccCChhHHH-----------------HHHHHHHhC-CceecCCcHHHHHHHhCCc
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH-DVYVSTGDWAEHLIRNGPS 101 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~-~l~~~~~l~-----------------eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~ 101 (254)
....++++..-+.+|++=+|.=-| .+.+-..+. +-+.-.|+. ++++..=+..-.++..|
T Consensus 30 ~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g-- 107 (271)
T 1ujp_A 30 EGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWG-- 107 (271)
T ss_dssp HHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhh--
Confidence 445555554444499999985332 122222333 334444444 33222214555566664
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+++|++.|++.|++.+=+. ++|.++..++++.++++|+..++
T Consensus 108 -~~~f~~~~~~aG~dGviv~----Dl~~ee~~~~~~~~~~~gl~~i~ 149 (271)
T 1ujp_A 108 -PERFFGLFKQAGATGVILP----DLPPDEDPGLVRLAQEIGLETVF 149 (271)
T ss_dssp -HHHHHHHHHHHTCCEEECT----TCCGGGCHHHHHHHHHHTCEEEC
T ss_pred -HHHHHHHHHHcCCCEEEec----CCCHHHHHHHHHHHHHcCCceEE
Confidence 7999999999999977775 45558888999999999887554
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=27 Score=37.06 Aligned_cols=146 Identities=8% Similarity=-0.002 Sum_probs=97.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCcee----cCCcHHHHHHH--hCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~~Gtl~E~a~~--qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
=+|.+-+-.. +-+-+.++.-++.++++|..+ +..+-||-... .+++.+-+..+.+.+.|.+.|=|.|-.--
T Consensus 658 g~d~irif~s---l~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 734 (1165)
T 2qf7_A 658 GIDLFRVFDC---LNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGL 734 (1165)
T ss_dssp TCCEEEEECT---TCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCC
T ss_pred CcCEEEEEee---HHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCC
Confidence 4777666432 344556999999999999643 22221332222 22334666667777899999999999988
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+.+-.++|+.++++ +. ..+++-+ +. |...-+-.+...++|||+.|=.=-
T Consensus 735 ~~P~~~~~lv~~l~~~-~~--~~i~~H~-Hn-------------------------d~GlAvAn~laAv~aGa~~vd~ti 785 (1165)
T 2qf7_A 735 LKPAAAKVLFKALREA-TG--LPIHFHT-HD-------------------------TSGIAAATVLAAVEAGVDAVDAAM 785 (1165)
T ss_dssp CCHHHHHHHHHHHHHH-CS--SCEEEEE-CB-------------------------TTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred cCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCCHHHHHHHHHHHhCCCEEEecc
Confidence 8898888999999884 22 2233311 11 233347788888999999653333
Q ss_pred ccccccCCCccHHHHHHHHhccCC
Q 025344 207 DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 207 rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.|+=...||...+.+-..++..+.
T Consensus 786 ~GlGe~~Gn~~le~vv~~L~~~g~ 809 (1165)
T 2qf7_A 786 DALSGNTSQPCLGSIVEALSGSER 809 (1165)
T ss_dssp GGGCSBTSCCBHHHHHHHHTTSTT
T ss_pred cccCCCccchhHHHHHHHHHhcCC
Confidence 488777899988877777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 254 | ||||
| d1qwga_ | 251 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 2e-63 | |
| d1u83a_ | 249 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 6e-56 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 196 bits (500), Expect = 2e-63
Identities = 43/242 (17%), Positives = 94/242 (38%), Gaps = 34/242 (14%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
+ + G+T + +ED + G ++D +KF G+ +++ + ++E +
Sbjct: 9 EDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYY 64
Query: 80 HQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138
+ V G E+ G F E++ +C+++GF+ +E++ GS +I E ++
Sbjct: 65 KDWGIKVYPGGTLFEYAYSKGK--FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKR 122
Query: 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198
K G + D +D I+ L+AG
Sbjct: 123 AKDNGFMVLTEVGKKMPDKDKQL---------------------TIDDRIKLINFDLDAG 161
Query: 199 ADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGP 252
AD ++I+ + + ++ + + + + + K +FEA FI ++G
Sbjct: 162 ADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGS 221
Query: 253 KV 254
V
Sbjct: 222 SV 223
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Score = 177 bits (451), Expect = 6e-56
Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 8 VRTNKPRETGQSILIDNGYPLQF----FKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 61
Query: 76 VKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133
+ +HD+ G + +++ + E+ C G + IE++ G+L + +
Sbjct: 62 ISTLKEHDITFFFGGTLFEKYVSQKK---VNEFHRYCTYFGCEYIEISNGTLPMTNKEKA 118
Query: 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193
Y+ + + A +A S E++E
Sbjct: 119 AYIADFS---------------DEFLVLSEVGSKDAELASRQSSEEWLE-------YIVE 156
Query: 194 CLEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRTSEWFI 247
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA N + FI
Sbjct: 157 DMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFI 216
Query: 248 RRYGPKV 254
++ GP V
Sbjct: 217 QKIGPNV 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 100.0 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.1 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 95.38 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 94.75 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 94.7 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.61 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 94.55 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 94.33 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 94.09 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 93.79 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 93.66 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.12 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 92.98 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 92.58 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.58 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.68 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 90.51 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 90.38 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 90.21 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 90.18 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 90.14 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 89.68 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 89.58 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 89.19 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 89.17 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 88.75 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 88.64 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 88.51 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 88.37 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 88.36 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 88.0 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 87.73 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 87.68 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 87.68 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 87.18 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 86.54 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 86.5 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 86.47 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 86.21 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 86.19 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 86.14 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 85.53 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 85.51 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 85.48 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 85.46 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 85.45 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 85.27 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 85.27 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 85.15 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 85.09 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 84.82 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 84.77 | |
| d1tg7a5 | 354 | Beta-galactosidase LacA, N-terminal domain {Penici | 84.67 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 83.86 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 83.83 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 83.47 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 83.29 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 82.17 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 81.8 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 81.6 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 80.99 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 80.46 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 80.4 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.9e-78 Score=540.42 Aligned_cols=208 Identities=21% Similarity=0.397 Sum_probs=198.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHh
Q 025344 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRN 98 (254)
Q Consensus 20 KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~q 98 (254)
|||++|||||+|||+ |+++++|+|++||+|||++||||||++|||+++|++||++||+|||+|||| ||||+|+.|
T Consensus 9 ~~~~~GlTmv~DkGl----gl~~leD~Le~ag~yID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~q 84 (251)
T d1qwga_ 9 EDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSK 84 (251)
T ss_dssp CCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHT
T ss_pred CCccCCcEEEeeCCC----CHHHHHHHHHhhhhheeEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHc
Confidence 999999999999998 889999999999999999999999999999999999999999999999997 799999999
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
| ++++|+++|++|||++|||||||++||+++|+++|++++++||+|+||+|+|++.++. + +
T Consensus 85 g--~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V~~EvG~K~~~~~~-----~-----~------- 145 (251)
T d1qwga_ 85 G--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDK-----Q-----L------- 145 (251)
T ss_dssp T--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHT-----T-----C-------
T ss_pred C--CHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEEeecccCCCCCCcc-----c-----c-------
Confidence 9 9999999999999999999999999999999999999999999999999999654211 1 2
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGP 252 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~I~~~Gp 252 (254)
+++++|+++++||+|||++|||||| |||+++|++|++++++|++++|++|+|||||+|+||+|||++|||
T Consensus 146 ----~~~~~i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiifEAP~k~~q~w~I~~fGp 221 (251)
T d1qwga_ 146 ----TIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGS 221 (251)
T ss_dssp ----CHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCT
T ss_pred ----CHHHHHHHHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCcccEEEECCChhHHHHHHHHhCC
Confidence 4899999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred CC
Q 025344 253 KV 254 (254)
Q Consensus 253 ~V 254 (254)
||
T Consensus 222 ~V 223 (251)
T d1qwga_ 222 SV 223 (251)
T ss_dssp TC
T ss_pred Cc
Confidence 98
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2e-77 Score=536.92 Aligned_cols=214 Identities=21% Similarity=0.395 Sum_probs=186.5
Q ss_pred C-CCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC
Q 025344 11 F-DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG 89 (254)
Q Consensus 11 f-~~l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G 89 (254)
| +++|+|++|||++|+|||+|||| |+++++|+|++||+|||++||||||++++|. |++||++||+|||+||+|
T Consensus 2 f~l~lp~R~~KPR~~GlT~v~D~Gl----~l~~leD~Le~~g~yID~vK~g~Gts~l~~~--L~eKI~l~~~~~V~v~~G 75 (249)
T d1u83a_ 2 FSLELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITFFFG 75 (249)
T ss_dssp CCCCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCTT--HHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCcccCceEEecCCC----CHHHHHHHHHhhhhheeEEEecCceeccCHH--HHHHHHHHHHcCCeEeCC
Confidence 5 68999999999999999999998 7789999999999999999999999999986 999999999999999997
Q ss_pred -cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 90 -DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 90 -tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
||||+|+.|| ++++|+++|++|||++|||||||++||+++|+++|+++++ +|.|++|+|+|++.... +
T Consensus 76 GtlfE~a~~~~--~~~~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~-~~~V~sEvG~K~~~~~~-----~--- 144 (249)
T d1u83a_ 76 GTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSD-EFLVLSEVGSKDAELAS-----R--- 144 (249)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTT-TSEEEEECSCCC--------------
T ss_pred CHHHHHHHHcC--CHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHh-cCeeccccCCcCccccC-----C---
Confidence 6999999999 9999999999999999999999999999999999999988 67899999998663211 0
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhc-cCCCceEEecCCchh
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRT 242 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~-l~~~klifEAP~k~q 242 (254)
. +++++|+++++||+||||+||+||| |||+++|++|++++++|+++ +++++||||||+|+|
T Consensus 145 --~-----------~~~~~i~~~~~~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~ii~~~~~~~~iifEAp~k~~ 211 (249)
T d1u83a_ 145 --Q-----------SSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTL 211 (249)
T ss_dssp --C-----------CSTHHHHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSCGGGEEEECCSHHH
T ss_pred --C-----------CHHHHHHHHHHHHHCCCceEEeehhccCCCCCcCCCcchhHHHHHHHHHhcCChhhEEEeCCCHHH
Confidence 1 3677899999999999999999998 79999999999999999985 999999999999999
Q ss_pred HHHHHHHhCCCC
Q 025344 243 SEWFIRRYGPKV 254 (254)
Q Consensus 243 Q~~~I~~~Gp~V 254 (254)
|+|||++|||||
T Consensus 212 q~~~I~~~G~~V 223 (249)
T d1u83a_ 212 QQGFIQKIGPNV 223 (249)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCc
Confidence 999999999998
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.10 E-value=0.0017 Score=54.89 Aligned_cols=168 Identities=11% Similarity=0.085 Sum_probs=117.1
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch
Q 025344 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA 102 (254)
Q Consensus 23 ~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~ 102 (254)
...+..+.+.+. ...+++....-..+|.+......+ .-+.+++-++.++++|+.+..+ ++.+-...++.
T Consensus 81 ~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~a~~~g~~~~~~--~~~~~~~~~~~ 149 (289)
T d1nvma2 81 HAQIATLLLPGI------GSVHDLKNAYQAGARVVRVATHCT---EADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEK 149 (289)
T ss_dssp SSEEEEEECBTT------BCHHHHHHHHHHTCCEEEEEEETT---CGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHH
T ss_pred hhHHHHHHhhhh------hhHHHHHHHHHhcccceEEEeehh---hhhhHhHHHHHHHHhCCceeeE--eeeccccCchh
Confidence 346777888775 234455555555778777765444 3445888899999999865532 11111223335
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.+..+.+.++|++.|-++|-.-.+.+++-.++++.+++.. .+...+|.-+ +.
T Consensus 150 ~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~-~~~~~i~~H~-Hn------------------------- 202 (289)
T d1nvma2 150 LAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPETQVGMHA-HH------------------------- 202 (289)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTTSEEEEEC-BC-------------------------
T ss_pred hhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHh-cccccceeee-ch-------------------------
Confidence 77888999999999999999999999999999999998852 1112233311 21
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
|....+..+...++|||++ |++. |+=...||..++.+-..+.+.|.
T Consensus 203 ~~g~a~an~l~A~~~G~~~--id~si~GlG~~~GN~~tE~lv~~l~~~g~ 250 (289)
T d1nvma2 203 NLSLGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLGW 250 (289)
T ss_dssp TTSCHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCcE--eeccccccCCCCCCccHHHHHHHHHhcCC
Confidence 2233477788999999996 6887 88888999999988777777664
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.38 E-value=0.11 Score=42.54 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE--IP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++.++.|+++||+.||+...... ++ .....++-+.+++.|+++.+ ++.-.+.... ++
T Consensus 19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~-l~~~~~~~~~----~~------------- 80 (271)
T d2q02a1 19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFNQL----TE------------- 80 (271)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTTSC----CH-------------
T ss_pred CHHHHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEE-eecccccCCC----CH-------------
Confidence 6899999999999999999654322 11 22234555667889998765 3321111111 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC--ccHHHH---HHHHhccCCCceEEec--------CCchhHHH
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS--LRADII---AKVIGRLGLEKTMFEA--------TNPRTSEW 245 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~--~r~d~i---~~ii~~l~~~klifEA--------P~k~qQ~~ 245 (254)
...+++.+.++.+-+.|+..|++-..+- ...-. .-.+.+ .++++..|+ ++..|. ....+...
T Consensus 81 ---~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~~~ 155 (271)
T d2q02a1 81 ---EVVKKTEGLLRDAQGVGARALVLCPLND-GTIVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQQ 155 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHTCSEEEECCCCS-SBCCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCcEEEEecCCC-CccchHHHHHHHHHHHHHHhccCCe-EEEEeecCCcCcccCCHHHHHH
Confidence 0134444445555567999998854311 11000 011222 233344443 455664 24445566
Q ss_pred HHHHhCCCC
Q 025344 246 FIRRYGPKV 254 (254)
Q Consensus 246 ~I~~~Gp~V 254 (254)
+|+..+++|
T Consensus 156 li~~~~~~~ 164 (271)
T d2q02a1 156 LIREAGSPF 164 (271)
T ss_dssp HHHHHTCCC
T ss_pred HHHHhCCcc
Confidence 888777653
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.75 E-value=0.28 Score=41.59 Aligned_cols=108 Identities=22% Similarity=0.259 Sum_probs=83.0
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+--..+ +.++..++++.+++.||.|+.|++-
T Consensus 118 I~ea~~~GADaiLLI~~~L--~~~~l~~l~~~a~~lgl~~LvEvh~---------------------------------- 161 (247)
T d1a53a_ 118 IDDAYNLGADTVLLIVKIL--TERELESLLEYARSYGMEPLIEIND---------------------------------- 161 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGS--CHHHHHHHHHHHHTTTCCCEEEECS----------------------------------
T ss_pred HHHHHHhhcchhhhhhhhc--cHHHHHHHHHHHHHHhhhHHhhcCC----------------------------------
Confidence 6789999999999987766 7889999999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP-~k~qQ~~~I~~~Gp~ 253 (254)
-+.+++.+++||+.|.|..|.+. +-++..+...+++..+|.+.+ |-|.= .-..+...+++.|.|
T Consensus 162 -~~El~~a~~~~a~iIGINnRnL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~d 227 (247)
T d1a53a_ 162 -ENDLDIALRIGARFIGINSRDLE--TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVN 227 (247)
T ss_dssp -HHHHHHHHHTTCSEEEEESBCTT--TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCC
T ss_pred -HHHHHHHHhCCCCeEeeeccChh--hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCC
Confidence 34566779999999999999883 445566777888888885544 45553 333445556666654
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=94.70 E-value=0.16 Score=42.40 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=109.6
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
....+.......+|.++.... +...+.+..-++.++.+|..+. ....++..+ .++.+.+.++.+.++|.+.|-
T Consensus 105 ~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~i~ 179 (303)
T d1rqba2 105 VDRFVDKSAENGMDVFRVFDA---MNDPRNMAHAMAAVKKAGKHAQGTICYTISPVH--TVEGYVKLAGQLLDMGADSIA 179 (303)
T ss_dssp HHHHHHHHHHTTCCEEEECCT---TCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTC--CHHHHHHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHhhhhHHhhhhh---HHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCC--CHHHHHHHHHHHHhcCCcEEe
Confidence 344555666778899887654 3344568888999999997543 222222111 234677888899999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
+.|-+-.+.+.+-.++|+.++++. .+.-++|.= +-.|...-+..+-..++|||
T Consensus 180 l~DT~G~~~P~~v~~li~~l~~~~-~~~i~i~~H--------------------------~Hnd~Gla~AN~laA~~aG~ 232 (303)
T d1rqba2 180 LKDMAALLKPQPAYDIIKAIKDTY-GQKTQINLH--------------------------CHSTTGVTEVSLMKAIEAGV 232 (303)
T ss_dssp EEETTCCCCHHHHHHHHHHHHHHH-CTTCCEEEE--------------------------EBCTTSCHHHHHHHHHHTTC
T ss_pred ecCccchhhhHHHHHHHHHHHhhc-CCcccceec--------------------------cCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999998851 111123331 11123334777888999999
Q ss_pred cEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 200 DMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 200 ~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+. |++- |+=...||..++.+-..+.++|.
T Consensus 233 ~~--id~ti~GlG~~~GN~~te~lv~~L~~~g~ 263 (303)
T d1rqba2 233 DV--VDTAISSMSLGPGHNPTESVAEMLEGTGY 263 (303)
T ss_dssp SE--EEEBCGGGCSTTSBCBHHHHHHHTTTSSE
T ss_pred CE--EEECCccCCCCCCCccHHHHHHHHHhcCC
Confidence 96 6886 88777899999988778777763
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=94.61 E-value=0.012 Score=49.14 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=43.1
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+..+.++++..++||+++|+|+--..=+.. +.|+-+++++..++--- |+.+ |+-+...+..+.++|++.
T Consensus 14 ~~~~al~i~~~~~~~i~~iKvG~~l~~~~G~----~~i~~l~~~~~~IflD~K~~DI-----gnTv~~~~~~~~~~~~d~ 84 (237)
T d1dbta_ 14 SAEETLAFLAPFQQEPLFVKVGMELFYQEGP----SIVKQLKERNCELFLDLKLHDI-----PTTVNKAMKRLASLGVDL 84 (237)
T ss_dssp SHHHHHHHTGGGTTSCCEEEECHHHHHHHTH----HHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHTTTCSE
T ss_pred CHHHHHHHHHHcCCcccEEEECHHHHhhcCH----HHHHHHHhcchheehhhhhccC-----chHHHHHHHhhhccccce
Confidence 5678888999999999999999644333333 34555577887665421 2221 112333344445566666
Q ss_pred EEe
Q 025344 118 IEL 120 (254)
Q Consensus 118 IEI 120 (254)
+-|
T Consensus 85 vtv 87 (237)
T d1dbta_ 85 VNV 87 (237)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.55 E-value=0.067 Score=43.73 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...++++.++++||+.|||.... .-+.++..++-+.+++.|+++..-..-.+.. .. + +..
T Consensus 20 ~~~~~l~~~a~~G~dgIEi~~~~-~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~-~~----~--------------~~~ 79 (250)
T d1yx1a1 20 GQASFLPLLAMAGAQRVELREEL-FAGPPDTEALTAAIQLQGLECVFSSPLELWR-ED----G--------------QLN 79 (250)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGG-CSSCCCHHHHHHHHHHTTCEEEEEEEEEEEC-TT----S--------------SBC
T ss_pred CHHHHHHHHHHhCCCEEEEeccc-CCCcchHHHHHHHHHHcCCEEEEeccccccc-Cc----h--------------hhH
Confidence 46678999999999999997433 3345566788899999999875432221111 00 0 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEA 237 (254)
.+....++.++ +.||..|.+-+-. ..... +-..+..+++..|+ +|.+|.
T Consensus 80 ~~~~~~i~~A~---~LG~~~v~~~~g~-~~~~~--~l~~l~~~a~~~Gv-~l~iE~ 128 (250)
T d1yx1a1 80 PELEPTLRRAE---ACGAGWLKVSLGL-LPEQP--DLAALGRRLARHGL-QLLVEN 128 (250)
T ss_dssp TTHHHHHHHHH---HTTCSEEEEEEEC-CCSSC--CHHHHHHHHTTSSC-EEEEEC
T ss_pred HHHHHHHHHHH---HhCCCEEEEeecc-cchhH--HHHHHHHHHHHcCC-EEEEEe
Confidence 13455555554 5799999987742 22222 34556777777887 788885
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=94.33 E-value=0.19 Score=41.97 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+.|.+.|=+.-.+ ..|+.++|.++++.+.+.- =++.-=+|+
T Consensus 25 ~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv------------------------- 79 (292)
T d1xkya1 25 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGT------------------------- 79 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEec-------------------------
Confidence 68889999999999999884433 4899999999999998730 011000111
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccc----CCCccHHHHHHHHhcc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGRL 228 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~i~~ii~~l 228 (254)
+..+..+.|++++..-++||+.|++=.- -+|+. .-.+..+.+.++.+ .
T Consensus 80 --~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~-~ 156 (292)
T d1xkya1 80 --GSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE-I 156 (292)
T ss_dssp --CCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT-S
T ss_pred --CcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc-C
Confidence 1125888999999999999999999642 12442 23466666666654 3
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCC
Q 025344 229 G-LEKTMFEATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 229 ~-~~klifEAP~k~qQ~~~I~~~Gp~ 253 (254)
+ +--+-+++++..+...+++..+++
T Consensus 157 p~v~giK~~~~~~~~~~~~~~~~~~~ 182 (292)
T d1xkya1 157 ENIVAIKDAGGDVLTMTEIIEKTADD 182 (292)
T ss_dssp TTEEEEEECSSCHHHHHHHHHHSCTT
T ss_pred CCEEEEeccccchhhhheeeeecCCC
Confidence 3 334445566656656666666554
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.09 E-value=0.17 Score=42.64 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHcCCCEEEec--CC-cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELN--VG-SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS--dG-ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.++++++++-+-|.+.|=+. .| +..|+.++|.++++.+.+. ++-+.+. + ..
T Consensus 29 ~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~-------~~~~~~v--------------i-----~g 82 (296)
T d1xxxa1 29 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA-------VGDRARV--------------I-----AG 82 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHH-------HTTTSEE--------------E-----EE
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHH-------hccccce--------------E-----ec
Confidence 58889999999999999763 22 3469999999999998773 2211000 0 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
-+..+.++.++.++..-++||+.|++=.--.+....+--.+-..+|++..++.=+++..|
T Consensus 83 ~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p 142 (296)
T d1xxxa1 83 AGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIP 142 (296)
T ss_dssp CCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred cccchhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 011258899999999999999999997753332211111233345555555555666655
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.11 Score=46.89 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=89.5
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc----
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL---- 125 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti---- 125 (254)
+.-|+-+=||+||-.+++++.|++.++.++++-- +.+. .|+.+.-+|.. -+++++.++++||+.|.+.-=+.
T Consensus 99 ~~~v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~-~~~~--~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~v 175 (441)
T d1olta_ 99 GRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ-FNAD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEV 175 (441)
T ss_dssp TCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-EEEE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHH
T ss_pred CCccceeEecCCCcCCCCHHHHHHHHHHHhhhcc-ccch--hcccccccccccchHHHHHHHHhCCceEEecchhcchhh
Confidence 4558899999999999999999999999987632 1121 12222222222 35788999999999977643332
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
.-+.++-.++|+.+++.||. |-..+-. +. + -+|.+.+.+.++.-++.+
T Consensus 176 l~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~--Gl--P---------------------gqT~~~~~~tl~~~~~l~ 230 (441)
T d1olta_ 176 QRLVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL--P---------------------KQTPESFAFTLKRVAELN 230 (441)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC--T---------------------TCCHHHHHHHHHHHHHHC
T ss_pred hhhhhcCCCHHHHHHHHHHHHhcccceeeccccc--cc--C---------------------CcchHHHHHHHHHHHhhC
Confidence 23566677899999999997 4444433 21 1 125888999999999999
Q ss_pred CcEEEEe
Q 025344 199 ADMIMID 205 (254)
Q Consensus 199 A~~ViiE 205 (254)
.+.|-+=
T Consensus 231 pd~is~y 237 (441)
T d1olta_ 231 PDRLSVF 237 (441)
T ss_dssp CSEEEEE
T ss_pred CCccccc
Confidence 9999663
|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.2 Score=40.76 Aligned_cols=92 Identities=8% Similarity=0.108 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+.+-++.++++||++|||-.+. -+++.++..++-+.+++.|+++.+ +-.-.+. ..+.+ .|+.
T Consensus 13 ~l~~a~~~a~e~G~~~ieif~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~-~~~~~p~~~n~~~-~~~~-------- 82 (285)
T d1qtwa_ 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ-ILPHDSYLINLGH-PVTE-------- 82 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG-BCCBCCTTCCTTC-SSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcce-eEecCCccccccc-chHH--------
Confidence 56667777899999999995432 357788888888999999987554 2111110 01111 1110
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
....+.+.+.+.+..+-+.||..|++-.-
T Consensus 83 ----~r~~s~~~~~~~i~~a~~lG~~~vv~h~g 111 (285)
T d1qtwa_ 83 ----ALEKSRDAFIDEMQRCEQLGLSLLNFHPG 111 (285)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCceeeece
Confidence 11123455555566666779999999863
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.67 Score=38.64 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=49.9
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCC-hhHHHHHHHHHHhCCceecC----Cc---HHHHHH--------------
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVST----GD---WAEHLI-------------- 96 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~-~~~l~eKi~l~~~~gV~v~~----Gt---l~E~a~-------------- 96 (254)
....+.++++.-++||+++|+|.=-..-+. +.+++....+++.+|..+.. +. =.+.++
T Consensus 40 ~~~eal~li~~l~~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~v 119 (267)
T d1dqwa_ 40 TTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADIT 119 (267)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEE
T ss_pred CHHHHHHHHHHhCCcceEEEECHHHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHHHHHHHHHhhcCCcEE
Confidence 678899999999999999999942222222 23444455666777776642 21 111111
Q ss_pred ----HhCCchHHHHHHHHHHcCCCE
Q 025344 97 ----RNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 97 ----~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.-|.+.++.+++.+++.+...
T Consensus 120 Tvh~~~G~~~l~~~~~~~~~~~~~~ 144 (267)
T d1dqwa_ 120 NAHGVVGPGIVSGLKQAAEEVTKEP 144 (267)
T ss_dssp EEESTTCTHHHHHHHHHHHHHCSSC
T ss_pred EecCcCCHHHHHHHHHHhhccCCcc
Confidence 125667888998888876553
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=92.98 E-value=0.22 Score=40.51 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=33.0
Q ss_pred eecCcccccCChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 58 Kfg~GT~~l~~~~~l~eKi~l~~~~gV---~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
|+|.-++.+++...|.+.+++++++|. .+.+....-..... ..+++..+.+++.|+..+-++
T Consensus 2 k~~~~~~~~~~~~~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~--~~~~~l~~~l~~~gl~i~~~~ 66 (278)
T d1i60a_ 2 KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKD--HSLDDLAEYFQTHHIKPLALN 66 (278)
T ss_dssp EEEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTS--SCHHHHHHHHHTSSCEEEEEE
T ss_pred EEEEeHHHhCCCCCHHHHHHHHHHHCcCEEEeCCccccccccCc--ccHHHHHHHHHHcCCcEEEEe
Confidence 666655556655556666666666664 33333322222222 246666666666666655554
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.58 E-value=0.41 Score=39.75 Aligned_cols=79 Identities=9% Similarity=0.077 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++-+-|.+.|=+--.| ..|+.++|.++++.+.+..= ++..=+|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------------------- 77 (295)
T d1o5ka_ 23 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGA------------------------- 77 (295)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeec-------------------------
Confidence 57888998888999998774333 47999999999998887410 11111111
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+.++.++.++..-++||+.|++=.-
T Consensus 78 --~~~st~~ai~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 78 --GTNSTEKTLKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp --CCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred --ccccHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1125788999999999999999999664
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.58 E-value=0.35 Score=40.40 Aligned_cols=111 Identities=10% Similarity=0.079 Sum_probs=68.7
Q ss_pred hHHHHHHHH-HHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 102 AFKEYVEDC-KQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 102 ~~~~yl~~~-k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
.+.++++++ .+.|++.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+
T Consensus 25 ~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv------------------------ 80 (293)
T d1f74a_ 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV------------------------ 80 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC------------------------
T ss_pred HHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCcccccccc------------------------
Confidence 578888876 46699998775222 4899999999999877631 011111122
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
+..++.+.++.++..-++||+.|++=..-.|....+---+...++++..++.=+|+..|.
T Consensus 81 ---~~~s~~~~iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~ 140 (293)
T d1f74a_ 81 ---GSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPF 140 (293)
T ss_dssp ---CCSCHHHHHHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSS
T ss_pred ---ccccHHHHHHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeecc
Confidence 011488899999999999999999966533322111011223344445555556666654
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.68 E-value=0.76 Score=36.83 Aligned_cols=98 Identities=9% Similarity=0.055 Sum_probs=64.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+....++++..++|||++|+|..-..-+..+.++ ++.++++.++..-. +..+ |+-...|.+.+.++|+|.
T Consensus 13 ~~~~a~~l~~~~~~~v~~iKig~~l~~~~G~~~v~---~l~~~~~~~i~~D~K~~DI-----g~t~~~~~~~~~~~gad~ 84 (212)
T d1km4a_ 13 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIA---EFRKRFGCRIIADFAVADI-----PETNEKICRATFKAGADA 84 (212)
T ss_dssp SHHHHHHHHHHHTTTCSEEEEEHHHHHHHCTHHHH---HHHHHHCCEEEEEEEECSC-----HHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhCCCCcEEEECHHHHHhcCHHHHH---HHHHhcccceehhhhhhcc-----ccHHHHhHhhhccccccE
Confidence 56788899999999999999985433333334443 34566776655321 2221 123456666677899999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
+-|+- ..+.+....+++.+++.|..+.
T Consensus 85 ~TVh~---~~g~~~i~~~~~~a~~~~~~~~ 111 (212)
T d1km4a_ 85 IIVHG---FPGADSVRACLNVAEEMGREVF 111 (212)
T ss_dssp EEEES---TTCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEec---cCChHHHHHHHHHHHhcCCccc
Confidence 99984 4556677778888887776543
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.38 Score=37.19 Aligned_cols=96 Identities=9% Similarity=-0.099 Sum_probs=56.7
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.+..+-++++..++|||++|+|+=-..-+..+.+++..+.+. +..+. ...-..+ .-..+.+.+.+.|.|.|
T Consensus 12 ~~~~~~~~~~~~~~~vdiikig~~~~~~~G~~~i~~l~~~~~--~~~i~-----~d~k~~d--~~~~~~~~~~~~gad~v 82 (213)
T d1q6oa_ 12 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYP--HKIVL-----ADAKIAD--AGKILSRMCFEANADWV 82 (213)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCT--TSEEE-----EEEEECS--CHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHhcCCCccEEEeCeeccccCCHHHHHHHHHhcc--cccce-----eEEeecc--chHHHHHHHHHcCCCEE
Confidence 567888899999999999999864333333444444433322 22221 1111111 22233455677899998
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcc
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v 146 (254)
-+. .....+.-..+++.+++.|.++
T Consensus 83 tvh---~~~g~~~~~~~~~~~~~~~~~~ 107 (213)
T d1q6oa_ 83 TVI---CCADINTAKGALDVAKEFNGDV 107 (213)
T ss_dssp EEE---TTSCHHHHHHHHHHHHHTTCEE
T ss_pred EEe---ccCCchHHHHHHHHHHHcCCce
Confidence 886 2345666667778888876653
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.94 Score=38.39 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+|+| +.+++.+|=|+|=+-...+ +.++..++++.+++.||.|+.|++-
T Consensus 118 id~~QI~ear~~GADavLLI~~~L--~~~~l~~l~~~a~~lgl~~LVEvh~----------------------------- 166 (254)
T d1piia2 118 IDPYQIYLARYYQADACLLMLSVL--DDDQYRQLAAVAHSLEMGVLTEVSN----------------------------- 166 (254)
T ss_dssp CSHHHHHHHHHTTCSEEEEETTTC--CHHHHHHHHHHHHHTTCEEEEEECS-----------------------------
T ss_pred CcHHHHHHHHhhccchhhhhHhhh--cccHHHHHHHHHHHHhhhHHHhhcc-----------------------------
Confidence 3444 6889999999999988776 6788899999999999999999876
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecCC-chhHHHHHHH
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATN-PRTSEWFIRR 249 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP~-k~qQ~~~I~~ 249 (254)
-+.+++.+++||..|-|..|.+- +=++.-+...+++..+|-+.+ +-|.=- -..+..+++.
T Consensus 167 ------~~El~~a~~~~a~iIGINnRnL~--tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~ 228 (254)
T d1piia2 167 ------EEEQERAIALGAKVVGINNRDLR--DLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH 228 (254)
T ss_dssp ------HHHHHHHHHTTCSEEEEESEETT--TTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTT
T ss_pred ------HHHHHHHHhhcccccCccccchh--hhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHHHc
Confidence 45567789999999999999662 122334455667777775554 446543 2344444443
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=90.21 E-value=0.2 Score=42.98 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------------------------CC-----hhHHHHHHHHHHHcCCcccceeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLE------------------------IP-----EETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------------------------i~-----~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.+=|+++|+|||++|+||-=+-. ++ .++..+||+.+.++|++|+-.+-.
T Consensus 23 i~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~ 101 (393)
T d1e43a2 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (393)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence 344489999999999999643311 32 688999999999999999888754
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=90.18 E-value=0.43 Score=40.84 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=73.3
Q ss_pred hhHHHHHHHhhcccccEEeecCcccc-cCChhHHH--------------HHHHHHH----hCCceecCCcHHHHHHHhCC
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHS-LMPKPFIE--------------EVVKRAH----QHDVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~-l~~~~~l~--------------eKi~l~~----~~gV~v~~Gtl~E~a~~qg~ 100 (254)
+..+.++|+...+.+|++=+|+=.|- +.+-..++ +-+++++ .+++++..=|.+...+..|
T Consensus 29 ~~~~~~~l~~l~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G- 107 (271)
T d1ujpa_ 29 REGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWG- 107 (271)
T ss_dssp HHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCC-
Confidence 46667777776678999999986551 22222222 2222222 3444444447788888885
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
++.|++.|++.|++.+=|=| +|.++..++...++++|+..++=+..
T Consensus 108 --~~~F~~~~~~aGvdGliipD----LP~ee~~~~~~~~~~~gl~~I~lvsP 153 (271)
T d1ujpa_ 108 --PERFFGLFKQAGATGVILPD----LPPDEDPGLVRLAQEIGLETVFLLAP 153 (271)
T ss_dssp --HHHHHHHHHHHTCCEEECTT----CCGGGCHHHHHHHHHHTCEEECEECT
T ss_pred --chhHhHHHhhcCceeEeccc----hhhhhHHHHHHHhhccccceeeccCC
Confidence 89999999999999998755 88888888999999999987764443
|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein Lmo2234 species: Listeria monocytogenes [TaxId: 1639]
Probab=90.14 E-value=0.26 Score=39.94 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v 146 (254)
.+++-++.++++||+.||+...-. .-+..+..++-+.+++.|+++
T Consensus 16 ~lee~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 63 (275)
T d2g0wa1 16 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKV 63 (275)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCce
Confidence 466666666666666666642100 001123345556666666664
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=89.68 E-value=0.35 Score=40.17 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------c------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGS----------L------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt----------i------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
+.+=++++++|||++|.|+==+ - .+ +.++..+||+.|.++|++|+-.+-.-
T Consensus 39 i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 116 (357)
T d1gcya2 39 LRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (357)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3344789999999999998211 0 11 24888999999999999999888764
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=89.58 E-value=0.81 Score=39.65 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCCEEEecC--------C----cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNV--------G----SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd--------G----ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
-++.++.+|+.||++|-|=- + .-.-..+...+++++|+++||+|+--++..+...+.+..
T Consensus 40 ~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q-------- 111 (387)
T d1ur4a_ 40 KQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQ-------- 111 (387)
T ss_dssp BCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCC--------
T ss_pred cccHHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCCCC--------
Confidence 34578899999999999721 0 112235677889999999999999999886665554322
Q ss_pred cccCCCccccccCHHH-H----HHHHHHHHHcCCcEEEEec
Q 025344 171 VARAPRSTEYVEDVDL-L----IRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~-~----i~~~~~dLeAGA~~ViiEa 206 (254)
..|..|......+..+ + -..+.+...+|+...|+|-
T Consensus 112 ~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei 152 (387)
T d1ur4a_ 112 KAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 152 (387)
T ss_dssp CCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCchhhhccchhHHHHHHHHHHHHHHHHHhhcCCCccEEEE
Confidence 2345564432222211 1 1234556678999989984
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=89.19 E-value=0.23 Score=41.81 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------------CC---------hhHHHHHHHHHHHcCCcccceeeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLE------------IP---------EETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------------i~---------~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
.++-.+++++|||++|+||==+-. .+ .++..++|+.+.++|++|+-.+-..
T Consensus 17 ~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~N 88 (354)
T d1g94a2 17 AQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (354)
T ss_dssp HHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeecc
Confidence 355566789999999999743322 22 7899999999999999999877664
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=89.17 E-value=2.4 Score=36.49 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=91.9
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (254)
+-++-|+.-..+...+.--..++++++|+|+. |.-+ +.+..|-+.||+.|=+.--..++.+-.+
T Consensus 46 iq~s~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~------------e~i~~ai~~GftSVMiDgS~l~~eeNi~ 113 (305)
T d1rvga_ 46 LALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRAGFTSVMIDKSHEDFETNVR 113 (305)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHTTCSEEEECCTTSCHHHHHH
T ss_pred EECCccHHhHccHHHHHHHHHHHhccCCcEEEeehhccCh------------hhhHHHHhcCCceEEEcCccccHHHHHH
Confidence 33443443344445556666677777777764 3223 3455667899999999777666554332
Q ss_pred --HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec---c
Q 025344 133 --LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---D 207 (254)
Q Consensus 133 --~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa---r 207 (254)
.++++.+...|.-|--|+|.=-+. +-+...+. .++.+| ||++..+.+++ -|.|.+=+== -
T Consensus 114 ~Tk~vv~~Ah~~gv~VEaElG~igg~-Ed~~~~~~-~~~~~T----------~peea~~Fv~~---TgvD~LAvaiGn~H 178 (305)
T d1rvga_ 114 ETRRVVEAAHAVGVTVEAELGRLAGI-EEHVAVDE-KDALLT----------NPEEARIFMER---TGADYLAVAIGTSH 178 (305)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCCCS-CC-------CCTTCC----------CHHHHHHHHHH---HCCSEEEECSSCCS
T ss_pred HHHHHHHHhchhceeEEeeeeeeecc-cccccccc-cccccC----------CHHHHHHHHHH---hCccHhhhhhhhhh
Confidence 478899999999999999983221 11000000 012233 67776666553 5998775533 2
Q ss_pred cccccCCC--ccHHHHHHHHhccCC
Q 025344 208 DVCKHADS--LRADIIAKVIGRLGL 230 (254)
Q Consensus 208 gi~d~~g~--~r~d~i~~ii~~l~~ 230 (254)
|.|...++ ++-+.+++|-+.++.
T Consensus 179 G~Yk~~~~~~l~~~~l~~I~~~~~~ 203 (305)
T d1rvga_ 179 GAYKGKGRPFIDHARLERIARLVPA 203 (305)
T ss_dssp SSBCSSSSCCCCHHHHHHHHHHCCS
T ss_pred cccCCCCcccchHHHHHHHHhccCC
Confidence 89988766 999999999876664
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=88.75 E-value=2.8 Score=34.22 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC----ChhHHHHHHHHHHhCCceecC-C--cH--H
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQHDVYVST-G--DW--A 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~----~~~~l~eKi~l~~~~gV~v~~-G--tl--~ 92 (254)
+..|++-++-++. .+..++..++.+..| +.+..++|.+.-. +...+.....+...+.-.+.. | |+ +
T Consensus 29 ~~~gV~~~v~~~t----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~~~~~~~~~~~~~~~~v~iGEiGld~~ 103 (259)
T d1zzma1 29 AQAGVGKIIVPAT----EAENFARVLALAENY-QPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLF 103 (259)
T ss_dssp HHTTEEEEEEECC----SGGGHHHHHHHHHHC-TTEEEEECCCGGGGGGCCHHHHHHHHHHHHHCCSSEEEEEEEEEECC
T ss_pred HHcCCCEEEEecC----CHHHHHHHHHHHhcC-ccccccccCCchHhhccchhhHHHHHHHHhccCcccceecccccccc
Confidence 4568988888886 456788888888777 5577888877642 333344555555555432221 2 21 1
Q ss_pred ----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 93 ----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 93 ----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
+..-++- .|++.++.|++++...+==+-+.- + ++++..++.+... .++-...+ +
T Consensus 104 ~~~~~~~~q~~--~f~~ql~lA~~~~~Pv~IH~r~a~----~---~~~~~l~~~~~~~---~~i~H~f~-----g----- 161 (259)
T d1zzma1 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRRTH----D---KLAMHLKRHDLPR---TGVVHGFS-----G----- 161 (259)
T ss_dssp SSCCCHHHHHH--HHHHHHHHHHHTTCCEEEEEESCH----H---HHHHHHHHHCCTT---CEEETTCC-----S-----
T ss_pred ccchhhhHHHH--HHHHHHHHHHHhccchhhhhHHHH----H---HHHHhhhcccccc---ceeeeccc-----C-----
Confidence 1222333 689999999999988654332221 2 3344444443322 12322211 1
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+.+++.++.|.+.=+ =+.-.+.++.+ +.++++.+|++||++|...|
T Consensus 162 --------------~----~~~~~~~l~~g~~~si-~~~~~~~~~~~-----~~~~v~~iPldriL~ETD~P 209 (259)
T d1zzma1 162 --------------S----LQQAERFVQLGYKIGV-GGTITYPRASK-----TRDVIAKLPLASLLLETDAP 209 (259)
T ss_dssp --------------C----HHHHHHHHHTTCEEEE-CGGGGCTTTCS-----HHHHHHHSCGGGEEECCCBT
T ss_pred --------------C----HHHHHHHHHcCCCccc-cccccccchHH-----HHHHHHhhccceEEEecCCC
Confidence 1 5677788888975433 23223444444 56788999999999997644
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.64 E-value=3.9 Score=34.04 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=72.6
Q ss_pred hhHHHHHHHhhcccccEEeecCccc-ccCChhH-----------------HHHHHHHHHhC-CceecCCcHHHHHHHhCC
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPF-----------------IEEVVKRAHQH-DVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~-~l~~~~~-----------------l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~ 100 (254)
+..+.+++......+|++=+|.=.| .+.+-.+ +-+.++-.+++ ++++..=|++...+..|
T Consensus 18 ~~~s~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G- 96 (248)
T d1geqa_ 18 KQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAG- 96 (248)
T ss_dssp HHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccC-
Confidence 4667777777677899999987433 1111112 22233333333 34444457777777775
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+++|++.|++.|++.+=|= ++|.++-..+...++++|+..++=+
T Consensus 97 --~~~f~~~~~~~Gv~Gliip----DLP~eE~~~~~~~~~~~gl~~I~lv 140 (248)
T d1geqa_ 97 --VRNFLAEAKASGVDGILVV----DLPVFHAKEFTEIAREEGIKTVFLA 140 (248)
T ss_dssp --HHHHHHHHHHHTCCEEEET----TCCGGGHHHHHHHHHHHTCEEEEEE
T ss_pred --HHHHhhhhcccCeeEEecc----CCcHHHHHHHHhhccccCcceEEEe
Confidence 9999999999999999875 4788898999999999988877633
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.91 Score=37.67 Aligned_cols=117 Identities=15% Similarity=0.030 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+-|.+.|=+.-. +..|+.++|.++++.+.+.. -++..=+|+
T Consensus 24 ~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv------------------------- 78 (295)
T d1hl2a_ 24 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV------------------------- 78 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeecc-------------------------
Confidence 5778888888999999888643 34799999999999887731 011111122
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccc--------------------------cccc----CCCccHHHHHHHHhc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDD--------------------------VCKH----ADSLRADIIAKVIGR 227 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg--------------------------i~d~----~g~~r~d~i~~ii~~ 227 (254)
+..+.++.++.++..-++||+.|++=..- +|+. .-.+..+++.+|.+
T Consensus 79 --~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~- 155 (295)
T d1hl2a_ 79 --GCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT- 155 (295)
T ss_dssp --CCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT-
T ss_pred --ccchhhHHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc-
Confidence 01247888999999999999999997631 1332 22466777777764
Q ss_pred cC-CCceEEecCCchhHHHH
Q 025344 228 LG-LEKTMFEATNPRTSEWF 246 (254)
Q Consensus 228 l~-~~klifEAP~k~qQ~~~ 246 (254)
.+ +--+=.++++..+...+
T Consensus 156 ~pnvvgiK~~~~~~~~~~~~ 175 (295)
T d1hl2a_ 156 LPGVGALKQTSGDLYQMEQI 175 (295)
T ss_dssp STTEEEEEECCCCHHHHHHH
T ss_pred CcchhhhccccccHHHHHHH
Confidence 33 44455666665544433
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=88.37 E-value=0.3 Score=41.52 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------------------C-----ChhHHHHHHHHHHHcCCcccceeee
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------------------------I-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------------------i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
.+.+=|.++++|||++|.||==+-. + +.++..+||+.|.++|++|+-.+-.
T Consensus 22 ~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~ 101 (394)
T d2d3na2 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 101 (394)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5777788999999999998643211 2 2578999999999999999877644
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=88.36 E-value=0.24 Score=40.53 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------------ccCC------hhHHHHHHHHHHHcCCcccceeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGS-------------LEIP------EETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt-------------i~i~------~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.+-|+++++|||++|++|==+ ..|+ .++..++|+.+.++|++|+-.+-.
T Consensus 23 i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~ 91 (347)
T d1ht6a2 23 MMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVI 91 (347)
T ss_dssp HHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccc
Confidence 3344677899999999997422 2222 277899999999999999988855
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=88.00 E-value=3.8 Score=33.57 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=106.3
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC----hhHHHHHHHHHHhCCceecC--C-cHH-
Q 025344 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DWA- 92 (254)
Q Consensus 21 PR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~----~~~l~eKi~l~~~~gV~v~~--G-tl~- 92 (254)
-|..|++-++-.|. .+...+..++.+..| +.+..+.|.+.-+- .+.+...-.++....|.--+ | .++
T Consensus 28 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~i~~a~GiHP~~~~~~~~~~~~~l~~~~~~~~vvaIGEiGLD~~~ 102 (260)
T d1j6oa_ 28 FEENNIEFVVNVGV----NLEDSKKSLDLSKTS-DRIFCSVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFR 102 (260)
T ss_dssp TTTTTEEEEEEECS----SHHHHHHHHHHHTTC-TTEEEEECCCGGGGGGCCTTHHHHHHHHTTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhc-cccccccccChhhcccccchhhhhhHHHHhhCCeeeEeeccccccc
Confidence 36789999999997 567889999988887 66778888776542 23454444444444442221 3 221
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
+ ...++. .|.+.++.|++++-..|==+-+. ..++++..++.+..... ++-...+ |
T Consensus 103 ~~~~~~~Q~~--vF~~ql~lA~~~~lPviiH~r~a-------~~~~~~il~~~~~~~~~--~i~H~fs--G--------- 160 (260)
T d1j6oa_ 103 NISPAEVQKR--VFVEQIELAGKLNLPLVVHIRDA-------YSEAYEILRTESLPEKR--GVIHAFS--S--------- 160 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEESC-------HHHHHHHHHHSCCCSSC--EEETTCC--S---------
T ss_pred cccHHHHHHH--HHHHHHHHHHhcCcceEEeeccc-------hHHHHHHHHhhcCCCCC--eeeeccc--c---------
Confidence 1 223443 79999999999999877544332 34677777776544211 2321111 1
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+.+++.|+.|.+.=+- +. ++ ..+...+.+++..+|+++|+.|...|
T Consensus 161 -------------~----~~~~~~~l~~g~~is~~-g~-~~----~~~~~~~~~~v~~iPldrlllETD~P 208 (260)
T d1j6oa_ 161 -------------D----YEWAKKFIDLGFLLGIG-GP-VT----YPKNEALREVVKRVGLEYIVLETDCP 208 (260)
T ss_dssp -------------C----HHHHHHHHHHTEEEEEC-GG-GG----CTTCHHHHHHHHHHCGGGEEECCCBT
T ss_pred -------------C----HHHHHHHHhCCCceeec-cc-cc----cchHHHHHHHHHhcccceEEEecCCC
Confidence 1 56778888888766442 11 11 22334577788999999999998754
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=87.73 E-value=0.55 Score=38.06 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCceecC---C-cH---HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--Ch-hHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST---G-DW---AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PE-ETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~---G-tl---~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~-~~r~~lI~~~ 139 (254)
..+++.-+++.++|+.+.. . .| =+....+.-+.++..++.|+.+|...|-+.-|...- +. +.+.++++..
T Consensus 46 ~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l 125 (278)
T d1i60a_ 46 HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVL 125 (278)
T ss_dssp SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCCCCHHHHHHHHHHHH
Confidence 3478888899999996442 1 11 111111111267889999999999999888776533 22 3355666666
Q ss_pred HHc
Q 025344 140 KSA 142 (254)
Q Consensus 140 ~~~ 142 (254)
++.
T Consensus 126 ~~l 128 (278)
T d1i60a_ 126 TEL 128 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=87.68 E-value=2.2 Score=35.87 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=72.6
Q ss_pred hhHHHHHHHhh-cccccEEeecCccc-ccCChhHHHHHHHHHHhC-------------------CceecCCcHHHHHHHh
Q 025344 40 HNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQH-------------------DVYVSTGDWAEHLIRN 98 (254)
Q Consensus 40 ~~~~~DlLe~a-g~yID~lKfg~GT~-~l~~~~~l~eKi~l~~~~-------------------gV~v~~Gtl~E~a~~q 98 (254)
+..+.++++.+ -.-+|++=+|+=.| .+.+-..+++--+.+-++ .+++..=|++-..+..
T Consensus 30 ~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~ 109 (267)
T d1qopa_ 30 IEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNN 109 (267)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhc
Confidence 46777887765 44599999997544 344444444433333333 3444445666666666
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
| +++|++.|++.|++.+-|=| +|.++-..+.+.++++|+..++=+
T Consensus 110 G---~~~f~~~~~~~Gv~GliipD----lP~ee~~~~~~~~~~~~l~~I~lv 154 (267)
T d1qopa_ 110 G---IDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIFIC 154 (267)
T ss_dssp C---HHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEECEE
T ss_pred C---chHHHHHHHhcCCCceeccc----hhhhhhHHHHHhhhccCceEEEEe
Confidence 4 89999999999999999976 888888888999999988866633
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.68 E-value=6.3 Score=33.33 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=103.0
Q ss_pred chhHHHHHHHhhc---ccccEEeecCcccccCChhHHH-HHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMG---QFVDGLKFSGGSHSLMPKPFIE-EVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag---~yID~lKfg~GT~~l~~~~~l~-eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
++..++.+++.|- .=| ++-++-|+.-.++-+.+. --..++++++|+|+. |.-+| .+..|
T Consensus 26 ~~e~~~avi~AAe~~~sPv-Ilq~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e------------~i~~a 92 (284)
T d1gvfa_ 26 NAETIQAILEVCSEMRSPV-ILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLD------------DIRRK 92 (284)
T ss_dssp SHHHHHHHHHHHHHHTCCC-EEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEECCHH------------HHHHH
T ss_pred CHHHHHHHHHHHHHHCCCE-EEEcCHhHHhhCCHHHHHHHHHHHHHhcCCeEEeeeccccchH------------HHHHH
Confidence 3455666665432 112 566777766666654444 344566888888875 33333 45667
Q ss_pred HHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
-+.||+.|=|.--.+++.+-- =.++++.+...|.-|-.|+|.=-+..+ +...+.. +..+| ||++..
T Consensus 93 i~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed-~~~~~~~-~~~~T----------~peea~ 160 (284)
T d1gvfa_ 93 VHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVED-DMSVDAE-SAFLT----------DPQEAK 160 (284)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-------------CCSSC----------CHHHHH
T ss_pred HhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccc-ccccccc-ccccC----------CHHHHH
Confidence 899999999866655443322 236778888889999999998422111 1000110 11223 688888
Q ss_pred HHHHHHHHcCCcEEEEecc---cccccCCCccHHHHHHHHhccCC
Q 025344 189 RRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+.+++ -|+|.+=+=-- |.|...-+++-+.+.+|-+.++.
T Consensus 161 ~Fv~~---TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~v 202 (284)
T d1gvfa_ 161 RFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 202 (284)
T ss_dssp HHHHH---HCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCS
T ss_pred HHHHH---hCCCEEeeecCceeeccCCCCccccchhhhhhccccC
Confidence 77764 68887655432 99999889999999999888764
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=87.18 E-value=1.5 Score=36.21 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHcCCCEEEecC--C-cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNV--G-SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd--G-ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++.+-|.+.|=+.- | +..|+.++|.++++.+.+. +...+-+-- +
T Consensus 23 ~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~---~~~~~~vi~-----g------------------ 76 (292)
T d2a6na1 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDL---ADGRIPVIA-----G------------------ 76 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH---HTTSSCEEE-----E------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhh---ccccceeEe-----e------------------
Confidence 577888899899999988753 2 3469999999999988873 111111100 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccC----CCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~i~~ii~~l~ 229 (254)
-+..+..+.++.++..-++||+.+++=.- -+|+.- -.+..+.+.++.+ ++
T Consensus 77 ~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~-~p 155 (292)
T d2a6na1 77 TGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK-VK 155 (292)
T ss_dssp CCCSSHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT-ST
T ss_pred cccchHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc-CC
Confidence 01125788999999999999999988552 125431 2456666666643 43
Q ss_pred -CCceEEecCCchhHHHHHHHhCCC
Q 025344 230 -LEKTMFEATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 230 -~~klifEAP~k~qQ~~~I~~~Gp~ 253 (254)
+-=+-...++..+...+++..+++
T Consensus 156 nv~giK~~~~~~~~~~~~~~~~~~~ 180 (292)
T d2a6na1 156 NIIGIKEATGNLTRVNQIKELVSDD 180 (292)
T ss_dssp TEEEEEECSCCTTHHHHHHTTSCTT
T ss_pred CEEEEEeccCcchhhhhhhhhcCCc
Confidence 333344555666666666665554
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=86.54 E-value=0.44 Score=40.39 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------------------cCC-----hhHHHHHHHHHHHcCCcccceee
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-------------------------EIP-----EETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------------------~i~-----~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
.+.+=|+++|+|||++|.||==+- .+. .++..+||+.|.++|++|+--+-
T Consensus 29 gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V 108 (361)
T d1mxga2 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVV 108 (361)
T ss_dssp HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEee
Confidence 467778899999999999883321 122 57899999999999999997665
Q ss_pred e
Q 025344 152 V 152 (254)
Q Consensus 152 ~ 152 (254)
.
T Consensus 109 ~ 109 (361)
T d1mxga2 109 I 109 (361)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=86.50 E-value=0.92 Score=37.17 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCC
Q 025344 104 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~ 158 (254)
++.++.+|+.||++|-| ++|.-. .+.-.+++++|+++||+|+-.++--....+
T Consensus 30 ~~~~~~lk~~G~n~VRi~vW~~p~~g~~~--~~~~~~~v~~a~~~gl~vil~~h~~~~wa~ 88 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQRVWVNPADGNYN--LDYNIAIAKRAKAAGLGVYIDFHYSDTWAD 88 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEECSSCTTCTTS--HHHHHHHHHHHHHTTCEEEEEECCSSSCCB
T ss_pred ccHHHHHHHcCCCEEEeeeeecCCCCccC--HHHHHHHHHHHHHCCCEEEEEecCCccccC
Confidence 45778899999999999 677664 445678999999999999998886444433
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=86.47 E-value=0.21 Score=40.09 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccCC------hhHHHHHHHHHHHcCCccccee
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG--SLEIP------EETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i~------~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
..++-++.+|++||++|-+|.. +--.| -+..-++|+.++++|++|+-.+
T Consensus 15 ~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l 71 (393)
T d1kwga2 15 RWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGT 71 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEecccchhhcCCCCCccCHHHHHHHHHHHHHCCCEEEEEc
Confidence 5777789999999999998852 11112 2345678999999999987443
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.21 E-value=0.5 Score=40.14 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------------------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------------------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------------------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
.+.+=|.++|+|||++|.||==+- .+ +.++..++|+.|.++|++|+-.+-.
T Consensus 25 ~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~ 104 (393)
T d1hvxa2 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (393)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 355567889999999999874321 12 2478999999999999999988765
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.19 E-value=0.22 Score=42.65 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEecC----------------Ccc----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 025344 104 KEYVEDCKQVGFDTIELNV----------------GSL----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd----------------Gti----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
++-.+++++|||++|+||= |.- .+ +.++..+||+.|.++|++|+--+-.
T Consensus 26 ~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~ 99 (403)
T d1hx0a2 26 LECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVI 99 (403)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3445568999999999993 221 12 2468999999999999999877754
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=86.14 E-value=1.8 Score=36.42 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=79.1
Q ss_pred EecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCc
Q 025344 29 MRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPS 101 (254)
Q Consensus 29 V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~------Gt-l~E~a~~qg~~ 101 (254)
++.|.. ....++.+.+.|-+| ++.+-.++|. .+.--.++++..+|.+++ |. -.|.-+..
T Consensus 43 lL~p~~----t~e~i~~lc~~A~~~------~~aaVcV~P~-~v~~a~~~L~gs~v~v~tVigFP~G~~~~~~K~~E--- 108 (251)
T d1o0ya_ 43 NLKPFA----TPDDIKKLCLEAREN------RFHGVCVNPC-YVKLAREELEGTDVKVVTVVGFPLGANETRTKAHE--- 108 (251)
T ss_dssp ECCTTC----CHHHHHHHHHHHHHH------TCSEEEECGG-GHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHH---
T ss_pred CCCCCC----CHHHHHHHHHHHhhc------CceEEEECHH-HHHHHHHHhcCCCceEEeeccCCCCCCcHHHHHHH---
Confidence 566665 557888888888654 8888888876 577777777888887764 42 33332222
Q ss_pred hHHHHHHHHHHcCCCEEEecCC-------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG-------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG-------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+++-+.|-+-|++=-. -.+-=.++-..+++.+...=+||+-|.+. +
T Consensus 109 -----a~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~------------------L--- 162 (251)
T d1o0ya_ 109 -----AIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCY------------------L--- 162 (251)
T ss_dssp -----HHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG------------------C---
T ss_pred -----HHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccc------------------c---
Confidence 35577789998886433 22222223223333222222333333322 2
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+.+++++..+-+++||||+|=.
T Consensus 163 --------~~~e~~~a~~ia~~aGadfvKT 184 (251)
T d1o0ya_ 163 --------DTEEKIAACVISKLAGAHFVKT 184 (251)
T ss_dssp --------CHHHHHHHHHHHHHTTCSEEEC
T ss_pred --------CcHHHHHHHHHHHHhCcceeec
Confidence 3678899999999999999876
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.53 E-value=1.8 Score=35.82 Aligned_cols=108 Identities=14% Similarity=0.010 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+-. =+..|+.++|.++++.+.+.--.+.+ |+ +
T Consensus 21 ~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~--gv-------~------------------ 73 (293)
T d1w3ia_ 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIF--QV-------G------------------ 73 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEE--EC-------C------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhcccccc--cc-------c------------------
Confidence 578888998899999988743 34589999999999988875322221 21 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccc-CCCccHHHHHHHHhccCCCceEEecC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
..+.++.++.++..-++||+.+++=.--.|.. +-+---+-..+|.+..++.=+++-.|
T Consensus 74 --~~st~~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~lYn~P 132 (293)
T d1w3ia_ 74 --GLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp --CSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred --cchhhhhhhhhhhhhhhccccccccccchhccchHHHHHHHHHHHHHhhccceeeeccc
Confidence 01477889999999999999998743212211 11111233455666666666666666
|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Hypothetical protein YgbM (EC1530) domain: Hypothetical protein YgbM (EC1530) species: Escherichia coli [TaxId: 562]
Probab=85.51 E-value=0.26 Score=38.76 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++.++.++++||++||+.+- -+.+. .++-+.+++.|+++..
T Consensus 16 pl~e~i~~a~~~Gf~gIEl~~~-~~~~~---~~~~~~l~~~gl~~~~ 58 (260)
T d1k77a_ 16 PFIERFAAARKAGFDAVEFLFP-YNYST---LQIQKQLEQNHLTLAL 58 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TTSCH---HHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhCCCEEEECCC-CCCCH---HHHHHHHHHCCCcEEE
Confidence 5888899999999999999743 23333 3566778899998654
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=85.48 E-value=0.67 Score=37.83 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccC--------------ChhHHHHHHHHHHHcCCcccceeee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEI--------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i--------------~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
..+++.|+.+|++||++|-+.-..... ..+...++++.|.++|++|+.++..
T Consensus 39 ~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 39 IKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHCCCeEEEECCccCccCcccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 368999999999999999985322211 1234458899999999999998875
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.46 E-value=8.9 Score=31.86 Aligned_cols=163 Identities=13% Similarity=0.174 Sum_probs=98.7
Q ss_pred hHHHHHHHhhccccc-------EEeecCcccccCChh---HHHHHHHHHHhCCceecC--C-c-HHHHHHHh-CC-----
Q 025344 41 NVLEDIFESMGQFVD-------GLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVST--G-D-WAEHLIRN-GP----- 100 (254)
Q Consensus 41 ~~~~DlLe~ag~yID-------~lKfg~GT~~l~~~~---~l~eKi~l~~~~gV~v~~--G-t-l~E~a~~q-g~----- 100 (254)
..+..+|..|.+||- .+|+|+- ++.+++ .+-+-|.++|+.|+.+.- | + -+...+.+ |.
T Consensus 8 ~~~~~~l~~a~PYi~~~r~ktiVIKlGG~--~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~ 85 (300)
T d2bufa1 8 AQVAKVLSEALPYIRRFVGKTLVIKYGGN--AMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFI 85 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECCT--TTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEChH--HhCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceec
Confidence 467789999999998 5888864 344443 355667899999984442 4 4 33322211 10
Q ss_pred --------------------chHHHHHHHHHHcCCCEEEecCCccc----------------------------CChhHH
Q 025344 101 --------------------SAFKEYVEDCKQVGFDTIELNVGSLE----------------------------IPEETL 132 (254)
Q Consensus 101 --------------------~~~~~yl~~~k~lGF~~IEISdGti~----------------------------i~~~~r 132 (254)
.-=.+..+.+.+.|..++-+|..... -...-.
T Consensus 86 ~g~RvT~~~~l~~~~~~~~g~vn~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~ 165 (300)
T d2bufa1 86 DGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN 165 (300)
T ss_dssp SSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC
T ss_pred CCcccccchhHHHHHHHHHhHHHHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecc
Confidence 01245567788889999887632211 011123
Q ss_pred HHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 133 LRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 133 ~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
.++|+..-+.|+. |++.+|.-.. ++. ...|.+++...+...|.|--=..+.+-.|+|+
T Consensus 166 ~~~i~~ll~~g~Ipvis~~~~~~~-------G~~--------------~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~ 224 (300)
T d2bufa1 166 VGLLNMLVKGDFIPVIAPIGVGSN-------GES--------------YNINADLVAGKVAEALKAEKLMLLTNIAGLMD 224 (300)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECTT-------SCE--------------EECCHHHHHHHHHHHHTCSEEEEEESSSCCBC
T ss_pred hhHHHHHhcCCCeEEecccccCcc-------cch--------------hcccHHHHHHHHHHHcCCCeEEEEcCCCcccc
Confidence 4778888888888 7788887311 111 12257777777776665443344445569999
Q ss_pred cCCC----ccHHHHHHHHh
Q 025344 212 HADS----LRADIIAKVIG 226 (254)
Q Consensus 212 ~~g~----~r~d~i~~ii~ 226 (254)
++|. +..+.++++++
T Consensus 225 ~~g~~~~~l~~~~~~~li~ 243 (300)
T d2bufa1 225 KQGQVLTGLSTEQVNELIA 243 (300)
T ss_dssp TTSCBCCEECHHHHHHHHH
T ss_pred CCCcchhhccHHHHHHHHH
Confidence 8876 55677777765
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=85.45 E-value=2.2 Score=35.08 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCCh----hHHHHHHHHHHhCCceecC--C-cHH-
Q 025344 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK----PFIEEVVKRAHQHDVYVST--G-DWA- 92 (254)
Q Consensus 21 PR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~----~~l~eKi~l~~~~gV~v~~--G-tl~- 92 (254)
-|..|++-++-+|. .+...+..++.+..| +.+..+.|-+.-+-. ..+....+++++..+..-. | .++
T Consensus 24 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~v~~a~GiHP~~~~~~~~~~~~~~~~~~~~~~~vaIGEiGLD~~~ 98 (260)
T d1xwya1 24 AFDAGVNGLLITGT----NLRESQQAQKLARQY-SSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNR 98 (260)
T ss_dssp HHHTTCCEEEECCC----SHHHHHHHHHHHHHS-TTEEEEECCCGGGGGGCCHHHHHHHHHHHTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhC-CcccchhhcCcchhhhhhhhHHHHHHHHHhcchhhhhhhhcccccc
Confidence 35679999999997 668999999998888 568888888774333 3344444555554442222 2 111
Q ss_pred ---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 93 ---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 93 ---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
....+|. .|.+-++.+++++-..|==+-+. .+ ++++..++...+.. -++-...+ |
T Consensus 99 ~~~~~~~q~~--~f~~ql~lA~~~~lPviiH~r~a----~~---~~~~il~~~~~~~~--~~v~H~f~--g--------- 156 (260)
T d1xwya1 99 NFSTPEEQER--AFVAQLRIAADLNMPVFMHCRDA----HE---RFMTLLEPWLDKLP--GAVLHCFT--G--------- 156 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHGGGGGGSS--CEEECSCC--C---------
T ss_pred cccchHHHHH--HHHHHHHHHHhcCCceEeeeccc----hh---HHHHHHHHhhccCc--ccchhhhh--c---------
Confidence 1122333 68888999999998887655543 33 34444444211110 11211111 1
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.-+-= .++... +...+.+++..+|++||+.|...|
T Consensus 157 -------------~----~~~~~~~~~~g~~~s~~g--~~~~~~---~~~~~~~~~~~iPldrlllETD~P 205 (260)
T d1xwya1 157 -------------T----REEMQACVAHGIYIGITG--WVCDER---RGLELRELLPLIPAEKLLIETDAP 205 (260)
T ss_dssp -------------C----HHHHHHHHHTTCEEEECG--GGGCTT---TSHHHHHHGGGSCGGGEEECCCTT
T ss_pred -------------c----HHHHHHhhhhccccccCc--cccchh---hHHHHHHHHHhhhhhheeeecCCC
Confidence 1 678888999998764421 122222 234577788999999999998754
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=85.27 E-value=4.6 Score=32.92 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=106.1
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC--ChhHHHHHHHHHHhCCceecC--C-cH---HH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQHDVYVST--G-DW---AE 93 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~--~~~~l~eKi~l~~~~gV~v~~--G-tl---~E 93 (254)
+..|++-++..|. .+...+..++.+..| +.+.++.|-+... ....+++.-+++.+..|..-. | .+ .+
T Consensus 30 ~~~gv~~ii~~~~----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~e~l~~~~~~~~vvaIGEiGLD~~~~~~ 104 (265)
T d1yixa1 30 AARDVKFCLAVAT----TLPSYLHMRDLVGER-DNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPE 104 (265)
T ss_dssp HHTTEEEEEECCS----SHHHHHHHHHHHCSC-TTEEEEECCCTTCCSSCCCHHHHHHHHTSTTEEEEEEEEEECTTCSS
T ss_pred HHcCCCEEEEeeC----CHHHHHHHHHHHHhc-ccccccccccccccccccchHHHHHHhccCCceeeeccccccccccc
Confidence 3569998998986 667889999998888 5577888877543 223466666777777664332 3 22 12
Q ss_pred -HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 025344 94 -HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 94 -~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
...+|. .|.+.++.+++++-..+==+-+. .+ ++++..++...... -++-...+ |
T Consensus 105 ~~~~q~~--~f~~ql~lA~~~~lPv~iH~r~a----~~---~~~~il~~~~~~~~--~~v~H~Fs--G------------ 159 (265)
T d1yixa1 105 TKVRQQE--SFIHHIQIGRELNKPVIVHTRDA----RA---DTLAILREEKVTDC--GGVLHCFT--E------------ 159 (265)
T ss_dssp CHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHHHTTGGGT--CEEETTCC--S------------
T ss_pred chHHHHH--HHHHHHHHHHHhCCCcccchhhH----HH---HHHHHHHhhcccCc--ceEEEeec--C------------
Confidence 334554 79999999999999887555543 23 34444444322111 12322111 1
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+- +.=.+.++ ..+.++++.+|++||+.|...|
T Consensus 160 ----------~----~~~a~~~l~~g~~~s~~-g~~~~~~~-----~~l~~~v~~iPldrlLlETD~P 207 (265)
T d1yixa1 160 ----------D----RETAGKLLDLGFYISFS-GIVTFRNA-----EQLRDAARYVPLDRLLVETDSP 207 (265)
T ss_dssp ----------C----HHHHHHHHTTTCEEEEC-GGGGSTTC-----HHHHHHHHHSCGGGEEECCCBT
T ss_pred ----------C----hHHHHHHHHcCCeecCc-cccccchh-----HHHHHHHHhcchhceEeecCCc
Confidence 1 56788889998765443 22122222 3577888999999999998755
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=85.27 E-value=0.48 Score=39.75 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCEEEecC----------CcccC--------ChhHHHHHHHHHHHcCCcccceeeee
Q 025344 105 EYVEDCKQVGFDTIELNV----------GSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISd----------Gti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
+-|.++|+|||++|+|+= ...+. +.++..++|+.+.++|++|+-.+-..
T Consensus 57 ~kLdyl~~lGi~~I~l~Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~N 123 (382)
T d1wzla3 57 DRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFN 123 (382)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred HhhHHHHHCCCCEEEECCcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeec
Confidence 336788999999999973 11111 56899999999999999999887663
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=85.15 E-value=1.9 Score=36.30 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=69.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+-... ++ ++..++++.+.+.||.|+-|++-
T Consensus 121 I~ea~~~GADaVLLIaal--l~-~~l~~l~~~A~~lgl~~LVEvh~---------------------------------- 163 (254)
T d1vc4a_ 121 LEEARAFGASAALLIVAL--LG-ELTGAYLEEARRLGLEALVEVHT---------------------------------- 163 (254)
T ss_dssp HHHHHHTTCSEEEEEHHH--HG-GGHHHHHHHHHHHTCEEEEEECS----------------------------------
T ss_pred HHHHHhccchHHHHHHHH--HH-HHHHHHHHHHHHhCCceEEEecc----------------------------------
Confidence 678899999999888643 33 45568999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccC-CCccHHHHHHHHhccCCCc-eEEecCCch
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHA-DSLRADIIAKVIGRLGLEK-TMFEATNPR 241 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~-g~~r~d~i~~ii~~l~~~k-lifEAP~k~ 241 (254)
-+.+++.+++||..|-|..|.+-.-. .-=++..+..++...+.+. +|-|.=-+.
T Consensus 164 -~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~ 219 (254)
T d1vc4a_ 164 -ERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSR 219 (254)
T ss_dssp -HHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCS
T ss_pred -HHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCC
Confidence 34456678999999999999762221 1113445666776666554 467776443
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=85.09 E-value=0.55 Score=40.62 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEecC---------------------------CcccCC------------hhHHHHHHHHHHHcCCccc
Q 025344 107 VEDCKQVGFDTIELNV---------------------------GSLEIP------------EETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 107 l~~~k~lGF~~IEISd---------------------------Gti~i~------------~~~r~~lI~~~~~~G~~v~ 147 (254)
|+++++||+++|.|+= .+..++ .++..++|+.|.++|++|+
T Consensus 49 Ldyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVi 128 (475)
T d1bf2a3 49 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 128 (475)
T ss_dssp HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 5678999999999982 112333 4678999999999999999
Q ss_pred ceeeee
Q 025344 148 PKFAVM 153 (254)
Q Consensus 148 ~E~g~k 153 (254)
-.+-..
T Consensus 129 lD~V~N 134 (475)
T d1bf2a3 129 MDVVYN 134 (475)
T ss_dssp EEECCS
T ss_pred EEeccc
Confidence 888764
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.82 E-value=0.53 Score=39.53 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=35.5
Q ss_pred HHHHHHcCCCEEEecCC--------ccc----------CChhHHHHHHHHHHHcCCcccceeee
Q 025344 107 VEDCKQVGFDTIELNVG--------SLE----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 107 l~~~k~lGF~~IEISdG--------ti~----------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|+++++|||++|+++== .-. =+.++..++|+.+.++|++|+-.+-.
T Consensus 59 ldyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~ 122 (382)
T d1j0ha3 59 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVF 122 (382)
T ss_dssp HHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeee
Confidence 45778999999999641 000 13578889999999999999998865
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=84.77 E-value=3.4 Score=34.63 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=74.3
Q ss_pred cCChhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCCh
Q 025344 66 LMPKPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPE 129 (254)
Q Consensus 66 l~~~~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~ 129 (254)
+.-.+.+..-=++++.-++++.- + ||-+. ..+.+-++.+.+.|.-.|-|-|.+. .++.
T Consensus 59 lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~------~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~ 132 (275)
T d1s2wa_ 59 ASWTQVVEVLEFMSDASDVPILLDADTGYGNF------NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADI 132 (275)
T ss_dssp --CHHHHHHHHHHHHTCSSCEEEECCSSCSSH------HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCH
T ss_pred cchhhHHHHHHhhhcccCCceeEecccccccc------hHHHHHHHHHHHhccceeEeeccccccccccccccccccccH
Confidence 44445556666778888888874 2 34332 2455667778889999999999642 4778
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 130 ~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
++...-|+.+++.-. -++|-+- . .-|. . +. ....++.|+++++..+||||.|.+|+.
T Consensus 133 ~~~~~ki~aa~~~~~--~~~~~i~---A----RtDa----~-----~~---~~gl~eai~R~~aY~eAGAD~vf~~~~ 189 (275)
T d1s2wa_ 133 EEFALKIKACKDSQT--DPDFCIV---A----RVEA----F-----IA---GWGLDEALKRAEAYRNAGADAILMHSK 189 (275)
T ss_dssp HHHHHHHHHHHHHCS--STTCEEE---E----EECT----T-----TT---TCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHhhhhhcc--CcceeEE---e----cchh----h-----hh---cCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence 887777777776311 1222221 0 0111 0 11 125899999999999999999999985
|
| >d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Glycosyl hydrolases family 35 catalytic domain domain: Beta-galactosidase LacA, N-terminal domain species: Penicillium sp. [TaxId: 5081]
Probab=84.67 E-value=0.43 Score=41.10 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCCh-hHHHHHHHHHHHcCCcccceeee
Q 025344 101 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEI---------SdGti~i~~-~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+..++-++.+|++||++|.+ ..|..+.+. .+..++|+.|+++|++|+-++|.
T Consensus 36 ~~w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~df~~~~~l~~~l~~a~~~Gl~vil~~g~ 97 (354)
T d1tg7a5 36 SLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGP 97 (354)
T ss_dssp GGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccCCCCCcccccchhhHHHHHHHHHHcCCEEEEcCCC
Confidence 46788899999999999998 345555442 23467899999999999988874
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=83.86 E-value=2.3 Score=32.34 Aligned_cols=107 Identities=7% Similarity=-0.021 Sum_probs=60.0
Q ss_pred ccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHH
Q 025344 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLV 139 (254)
Q Consensus 65 ~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~ 139 (254)
.....+.+++-++.++++|+.+..... . ..-.+......+.|.+.+-+.-+.. .......++.|+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~v~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~ 157 (213)
T d1q6oa_ 86 CCADINTAKGALDVAKEFNGDVQIELT------G--YWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL 157 (213)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEEEEEC------S--CCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHcCCceecccC------C--CCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHh
Confidence 455666788888888888875432100 0 0111123333455666665432111 12334456778888
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCC
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD 214 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g 214 (254)
++.++.+.+-.|++. + .++..+++|||.|+| +|+||.++.
T Consensus 158 ~~~~~~i~~~gGi~~--------~--------------------------~~~~~~~~Gad~iVV-Gr~I~~a~d 197 (213)
T d1q6oa_ 158 SDMGFKVTVTGGLAL--------E--------------------------DLPLFKGIPIHVFIA-GRSIRDAAS 197 (213)
T ss_dssp HHTTCEEEEESSCCG--------G--------------------------GGGGGTTSCCSEEEE-SHHHHTSSC
T ss_pred hccCceEecCCCcCc--------C--------------------------CHHHHHHcCCCEEEE-ChhhcCCCC
Confidence 877776665554421 1 112347899998875 789998765
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.83 E-value=4.6 Score=33.25 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=76.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~------Gt-l~E~a~~qg~~~~~~yl~~~k 111 (254)
....++.+.+.|-+| ++.+..+.|. .+..--++++..+|.+++ |+ -.|.-+.+ .+++-
T Consensus 34 T~~~i~~lc~~A~~~------~~~avcV~p~-~v~~a~~~l~~s~v~v~tVigFP~G~~~~~~k~~E--------~~~Ai 98 (234)
T d1n7ka_ 34 TEEDVRNLVREASDY------GFRCAVLTPV-YTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVE--------AQTVL 98 (234)
T ss_dssp CHHHHHHHHHHHHHH------TCSEEEECHH-HHHHHHHHHHHHTCCEEEEESTTTCCSCHHHHHHH--------HHHHH
T ss_pred CHHHHHHHHHHHHHh------CCeEEEECcH-hHHHHHHHhhcCCCceEEEEecCCCCCcHHHHHHH--------HHHHH
Confidence 456777777777543 7776666665 455555666666776653 42 34443333 23445
Q ss_pred HcCCCEEEecCCcccCCh---hHHHHHHHHHHHcC--CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 112 QVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.|-+-|.+=-..-.+.. ++-.+.++.+++.| +||+-|.+. + |.++
T Consensus 99 ~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~------------------L-----------~~~~ 149 (234)
T d1n7ka_ 99 EAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPL------------------W-----------DDKT 149 (234)
T ss_dssp HHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGG------------------S-----------CHHH
T ss_pred HcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccc------------------c-----------chHH
Confidence 678887776322111112 22334556666666 444444333 2 3678
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADS 215 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~ 215 (254)
+....+-+++||||+|=. +-|.+...+.
T Consensus 150 i~~a~~~a~~aGadFVKT-STG~~~~gat 177 (234)
T d1n7ka_ 150 LSLLVDSSRRAGADIVKT-STGVYTKGGD 177 (234)
T ss_dssp HHHHHHHHHHTTCSEEES-CCSSSCCCCS
T ss_pred HHHHHHHHHHhhhhheee-cccccCCCCC
Confidence 888888999999999874 3454444443
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=83.47 E-value=0.87 Score=37.00 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHHHcCCCEEEecCCc--------------------------cc--C-ChhHHHHHHHHHHHcCCcccceeee
Q 025344 107 VEDCKQVGFDTIELNVGS--------------------------LE--I-PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGt--------------------------i~--i-~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|+++|+|||++|++|==+ ++ + +.++..++|+.+.++|++|+-.|-.
T Consensus 29 LdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~ 103 (390)
T d1ud2a2 29 AAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (390)
T ss_dssp HHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 567899999999997421 11 2 4578999999999999999887744
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=83.29 E-value=0.3 Score=41.38 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred HhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeee
Q 025344 80 HQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 80 ~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k 153 (254)
|+.||-+||+ .++| .-.+|++.++++||+.|=-|==..+-+.++ ..++++.|++.||+|+..+..+
T Consensus 3 ~~LGiSvY~~~~~~e--------~~~~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (244)
T d1x7fa2 3 RKLGISLYPEHSTKE--------KDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 73 (244)
T ss_dssp CEEEEEECGGGSCHH--------HHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ceeEEEEccCCCCHH--------HHHHHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHH
Confidence 4567778887 4554 346899999999999987765444443332 4588999999999998877763
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=82.17 E-value=2.6 Score=35.74 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHH
Q 025344 73 EEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRL 138 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~ 138 (254)
..--++++..++++.- + ||-.. +..+.+-++.+.+.|.-.|-|=|... -+|.++.++-|+.
T Consensus 67 ~~~~~i~~a~~~Pvi~D~d~GyG~~-----~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~a 141 (289)
T d1muma_ 67 TDIRRITDVCSLPLLVDADIGFGSS-----AFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRA 141 (289)
T ss_dssp HHHHHHHHHCCSCEEEECTTCSSSS-----HHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHH
T ss_pred HHHHHHhcccCCCeeeccccccccc-----chHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHH
Confidence 3334566677887764 2 33221 11445667777899999999988532 4788898888888
Q ss_pred HHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccH
Q 025344 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA 218 (254)
Q Consensus 139 ~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~ 218 (254)
+.+.- --|+|-+- . .-|. ......++.|++++...+||||.|.+|+- -..
T Consensus 142 a~~a~--~~~d~~Ii---A----RTDa-------------~~~~g~~eAi~R~~aY~eAGAD~vf~~~~--------~~~ 191 (289)
T d1muma_ 142 AVDAK--TDPDFVIM---A----RTDA-------------LAVEGLDAAIERAQAYVEAGAEMLFPEAI--------TEL 191 (289)
T ss_dssp HHHTC--SSTTSEEE---E----EECC-------------HHHHCHHHHHHHHHHHHHTTCSEEEETTC--------CCH
T ss_pred HHHhc--CCcchhhe---e----cccc-------------ccccCHHHHHHHHHHhhhcCCcEEEecCC--------CCH
Confidence 87731 11122220 0 0111 11235889999999999999999999874 123
Q ss_pred HHHHHHHhccC
Q 025344 219 DIIAKVIGRLG 229 (254)
Q Consensus 219 d~i~~ii~~l~ 229 (254)
+.+.++.+.++
T Consensus 192 ~~~~~~~~~~~ 202 (289)
T d1muma_ 192 AMYRQFADAVQ 202 (289)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 55666665554
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=81.80 E-value=0.61 Score=41.26 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCEEEecCCc--------------------ccC-------------ChhHHHHHHHHHHHcCCcccceee
Q 025344 105 EYVEDCKQVGFDTIELNVGS--------------------LEI-------------PEETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGt--------------------i~i-------------~~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
+=|+++|+||+++|+++==+ ..+ +.++..++|+.+.++|++|+-.+-
T Consensus 124 ~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV 203 (572)
T d1gjwa2 124 LLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203 (572)
T ss_dssp HTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HhhHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEee
Confidence 34678899999999996210 111 137899999999999999988774
Q ss_pred e
Q 025344 152 V 152 (254)
Q Consensus 152 ~ 152 (254)
.
T Consensus 204 ~ 204 (572)
T d1gjwa2 204 P 204 (572)
T ss_dssp T
T ss_pred e
Confidence 4
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=81.60 E-value=0.81 Score=38.94 Aligned_cols=46 Identities=28% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEecC-----------------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 025344 107 VEDCKQVGFDTIELNV-----------------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 107 l~~~k~lGF~~IEISd-----------------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|+++|+|||++|+++= |.- .+ +.++..++|+.+.++|++|+-.+-.
T Consensus 58 Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~ 130 (407)
T d1qhoa4 58 LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVP 130 (407)
T ss_dssp HHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHcCCCEEEeCccccCCcccCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeecccc
Confidence 4578999999999962 111 11 3578999999999999999887643
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=80.99 E-value=2.3 Score=34.75 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=84.8
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec-----C-Cc-HHHHHHHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-GD-WAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~-----~-Gt-l~E~a~~qg~~~~~~yl~~~k 111 (254)
....++.+.+.|-+| ++.+-.++|. .+..--++++..+|.++ | |+ -.|.-+.+ .+++-
T Consensus 16 T~~~i~~lc~~A~~~------~~~aVcV~P~-~v~~a~~~l~~s~v~v~~VigFP~G~~~~~~k~~e--------~~~ai 80 (211)
T d1ub3a_ 16 TLEEVAKAAEEALEY------GFYGLCIPPS-YVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALE--------AALAC 80 (211)
T ss_dssp CHHHHHHHHHHHHHH------TCSEEECCGG-GHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHH--------HHHHH
T ss_pred CHHHHHHHHHHHHHh------CCeEEEECHH-HHHHHHHHccCCCCceEEEEecccccCcHHHHHHH--------HHHHH
Confidence 456778888887655 7777777776 46666667777888765 3 42 33332222 34566
Q ss_pred HcCCCEEEecC-------CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 112 QVGFDTIELNV-------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 112 ~lGF~~IEISd-------Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+.|-+-|++=- |-.+.-.++-..+.+.+.+.-+||+-|.+. + |.
T Consensus 81 ~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~------------------L-----------~~ 131 (211)
T d1ub3a_ 81 ARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY------------------F-----------SP 131 (211)
T ss_dssp HTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG------------------S-----------CH
T ss_pred HcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEecccc------------------C-----------CH
Confidence 78999988633 333333333333333333333555555444 2 36
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+++++..+-.++||||+|=.=. |.. . +....+.+.-+.+.++
T Consensus 132 ~ei~~a~~~a~~aGadfiKTST-G~~-~-~gat~e~v~~m~~~~~ 173 (211)
T d1ub3a_ 132 EEIARLAEAAIRGGADFLKTST-GFG-P-RGASLEDVALLVRVAQ 173 (211)
T ss_dssp HHHHHHHHHHHHHTCSEEECCC-SSS-S-CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccceEEecC-CCC-C-CCCCHHHHHHHHHHhC
Confidence 7889999999999999987633 321 1 2234555555544443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=80.46 E-value=2.8 Score=34.18 Aligned_cols=90 Identities=14% Similarity=0.325 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 72 IEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 72 l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
.++.++..++++| .+..+. +.+...+..+.+-+-|+.+|||.-- .+...+.|+.++++- |++
T Consensus 4 ~~~~~~~l~~~~iipvlr~~--------~~~~~~~~~~al~~~Gi~~iEitl~-----~~~a~~~I~~l~~~~----p~~ 66 (212)
T d1vhca_ 4 TQQIIEKLRELKIVPVIALD--------NADDILPLADTLAKNGLSVAEITFR-----SEAAADAIRLLRANR----PDF 66 (212)
T ss_dssp HHHHHHHHHHHCEEEEECCS--------SGGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHHHCCEEEEEeCC--------CHHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHhcC----CCc
Confidence 3566777888888 444453 2235566778888999999999754 466778999887641 222
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
-+ |. |-.++ .+++++.++|||++++-=+
T Consensus 67 ~v-------Ga------GTV~~---------------~~~~~~a~~aGa~FivSP~ 94 (212)
T d1vhca_ 67 LI-------AA------GTVLT---------------AEQVVLAKSSGADFVVTPG 94 (212)
T ss_dssp EE-------EE------ESCCS---------------HHHHHHHHHHTCSEEECSS
T ss_pred eE-------ee------eeccc---------------HHHHHHHHhhCCcEEECCC
Confidence 22 11 11133 7789999999999998644
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=80.40 E-value=1.1 Score=35.71 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHcCCCEEEe---cCCcc-----------cCC---hhHHHHHHHHHHHcCCcccceeeee
Q 025344 101 SAFKEYVEDCKQVGFDTIEL---NVGSL-----------EIP---EETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEI---SdGti-----------~i~---~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
+.+++.++.++++||++|-| +++.. .++ .+...++|+.|.++|++|+..+.-.
T Consensus 42 ~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~gi~vi~d~~~~ 111 (350)
T d2c0ha1 42 STFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWNG 111 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCCCCccChhhhHHHHHHHHHHHHCCCEEEEEeccc
Confidence 37899999999999999998 33321 111 2455689999999999999988764
|