Citrus Sinensis ID: 025347

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF
ccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEccccccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccEEcEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccc
cHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEcccccccccccccEEcccEEEEEEEEccccEEEEccccccccccccEcccccc
MTNIAASSSVALLLFVLNFCfrgtfgdygggwqsghatfygggdasgtmggacgygnlysqgygtnTAALSTALFnnglscgscyemkcendpkwclpgsiivtatnfcppnlalsndnggwcnpplqhfdmaepAFLQIAQYRAgivpisfrripcakkggirftvngHSYFNLVLITNvggagdvhsvsIKGSKTGWQAMSRNwgqnwqsnsylngqSLSFQltasdgrtvtsnnvvpgnwqfgqtfeggqf
MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSnnvvpgnwqfgqtfeggqf
MTNIaasssvalllFVLNFCFRGTFGDYGGGWQSGHATFYgggdasgtmggacgYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF
********SVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFG********
**********ALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF
********SVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF
*TNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFE****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q40636251 Expansin-A2 OS=Oryza sati yes no 0.976 0.988 0.792 1e-115
O22874253 Expansin-A8 OS=Arabidopsi yes no 0.956 0.960 0.8 1e-115
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.964 0.995 0.784 1e-111
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.964 0.995 0.784 1e-111
Q38866255 Expansin-A2 OS=Arabidopsi no no 0.992 0.988 0.744 1e-111
Q9C554250 Expansin-A1 OS=Arabidopsi no no 0.948 0.964 0.734 1e-108
O80622253 Expansin-A15 OS=Arabidops no no 0.952 0.956 0.730 1e-107
Q9LDR9249 Expansin-A10 OS=Arabidops no no 0.964 0.983 0.759 1e-105
O48818257 Expansin-A4 OS=Arabidopsi no no 0.889 0.879 0.75 1e-102
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.952 0.930 0.710 1e-100
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function desciption
 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/251 (79%), Positives = 214/251 (85%), Gaps = 3/251 (1%)

Query: 6   ASSSVALLLFVLNFCF--RGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGY 63
           AS S ALLL    FCF  R    DYG  WQS HATFYGGGDASGTMGGACGYGNLYS GY
Sbjct: 2   ASRSSALLLLFSAFCFLARRAAADYGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGY 60

Query: 64  GTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWC 123
           GTNTAALST LFN+G +CGSCYE++C+ND +WCLPGS+ VTATN CPPN AL ND+GGWC
Sbjct: 61  GTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWC 120

Query: 124 NPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGG 183
           NPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVL+TNV G
Sbjct: 121 NPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAG 180

Query: 184 AGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 243
            GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQ+  SDGRTVTSNNVVP  W
Sbjct: 181 PGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240

Query: 244 QFGQTFEGGQF 254
           QFGQTFEGGQF
Sbjct: 241 QFGQTFEGGQF 251
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|Q38866|EXPA2_ARATH Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q9LDR9|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1 Back     alignment and function description
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
225350102254 expansin 2 [Citrus sinensis] 1.0 1.0 1.0 1e-145
110084641252 expansin [Citrus sinensis] 0.992 1.0 0.937 1e-132
81230695252 alpha-expansin 2 [Gossypium hirsutum] 0.980 0.988 0.895 1e-129
217384812259 expansin 2 [Ziziphus jujuba] 0.996 0.976 0.874 1e-129
388500004253 unknown [Medicago truncatula] 0.988 0.992 0.868 1e-128
388252787253 expansin 4 [Ziziphus jujuba] 0.996 1.0 0.866 1e-127
6646885253 expansin [Fragaria x ananassa] 0.968 0.972 0.861 1e-125
167860796253 expansin 3 [Dimocarpus longan] 0.984 0.988 0.869 1e-125
130766289253 expansin [Litchi chinensis] 0.984 0.988 0.873 1e-125
356509072250 PREDICTED: expansin-A8-like [Glycine max 0.917 0.932 0.901 1e-124
>gi|225350102|gb|ACN87961.1| expansin 2 [Citrus sinensis] Back     alignment and taxonomy information
 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYS 60
           MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYS
Sbjct: 1   MTNIAASSSVALLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYS 60

Query: 61  QGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNG 120
           QGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNG
Sbjct: 61  QGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNG 120

Query: 121 GWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 180
           GWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN
Sbjct: 121 GWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 180

Query: 181 VGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVP 240
           VGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVP
Sbjct: 181 VGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVP 240

Query: 241 GNWQFGQTFEGGQF 254
           GNWQFGQTFEGGQF
Sbjct: 241 GNWQFGQTFEGGQF 254

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|110084641|gb|ABG49444.1| expansin [Citrus sinensis] Back     alignment and taxonomy information
>gi|81230695|gb|ABB59694.1| alpha-expansin 2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|217384812|gb|ACK43222.1| expansin 2 [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|388500004|gb|AFK38068.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388252787|gb|AFK24457.1| expansin 4 [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|6646885|gb|AAF21101.1|AF159563_1 expansin [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|167860796|gb|ACA05166.1| expansin 3 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|130766289|gb|ABO32366.1| expansin [Litchi chinensis] Back     alignment and taxonomy information
>gi|356509072|ref|XP_003523276.1| PREDICTED: expansin-A8-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.937 0.940 0.763 1.6e-104
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.893 0.876 0.753 3.4e-100
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.937 0.933 0.719 5e-99
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.881 0.814 0.732 1.8e-96
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.929 0.932 0.686 3.7e-96
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.901 0.891 0.689 2.1e-91
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.889 0.869 0.688 1.4e-89
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.901 0.887 0.681 5.9e-89
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.893 0.890 0.669 1.6e-88
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.901 0.874 0.676 5.3e-88
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 184/241 (76%), Positives = 205/241 (85%)

Query:    16 VLNFCF-RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTAL 74
             +++  F +GT GD  GGWQ GHATFY              YGNLY QGYGTNTAALSTAL
Sbjct:    14 IISVLFLQGTHGD-DGGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTAL 72

Query:    75 FNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAE 134
             FNNGL+CG+CYEMKC +DP+WCL  +I VTATNFCPPN  LSNDNGGWCNPPLQHFD+AE
Sbjct:    73 FNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAE 132

Query:   135 PAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKG 194
             PAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVLI+NVGGAGDVH+VSIKG
Sbjct:   133 PAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKG 192

Query:   195 SKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQ 253
             SKT  WQAMSRNWGQNWQSNSY+N QSLSFQ+T SDGRT+ SN+V P NWQFGQT++GGQ
Sbjct:   193 SKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQ 252

Query:   254 F 254
             F
Sbjct:   253 F 253
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0006949 "syncytium formation" evidence=IEP
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.73060.95270.9565nono
Q38864EXPA5_ARATHNo assigned EC number0.70080.84640.8431nono
Q38865EXPA6_ARATHNo assigned EC number0.71490.88970.8793nono
Q38866EXPA2_ARATHNo assigned EC number0.74400.99210.9882nono
Q9M2S9EXP16_ARATHNo assigned EC number0.71020.95270.9307nono
Q9LZ99EXPA9_ARATHNo assigned EC number0.73680.88970.8759nono
O48818EXPA4_ARATHNo assigned EC number0.750.88970.8793nono
A2Y5R6EXPA4_ORYSINo assigned EC number0.78450.96450.9959N/Ano
O22874EXPA8_ARATHNo assigned EC number0.80.95660.9604yesno
Q9C554EXPA1_ARATHNo assigned EC number0.73490.94880.964nono
Q9M4X7EXPA6_ORYSJNo assigned EC number0.71360.88580.8687nono
Q40636EXPA2_ORYSJNo assigned EC number0.79280.97630.9880yesno
Q0DHB7EXPA4_ORYSJNo assigned EC number0.78450.96450.9959nono
Q9LDR9EXP10_ARATHNo assigned EC number0.75910.96450.9839nono
Q852A1EXPA7_ORYSJNo assigned EC number0.72220.90150.8674nono
Q4PNY1EXP11_ORYSJNo assigned EC number0.72930.85430.875nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrEXPA12
hypothetical protein (250 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-134
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-126
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-53
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 5e-38
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 1e-27
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 1e-21
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 2e-05
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  377 bits (970), Expect = e-134
 Identities = 180/227 (79%), Positives = 202/227 (88%)

Query: 28  YGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEM 87
           YG GW   HATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+
Sbjct: 21  YGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI 80

Query: 88  KCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGI 147
           KC ND  WCLPGSII+TATNFCPPNLAL N++GGWCNPP QHFD+++P F +IAQY+AGI
Sbjct: 81  KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGI 140

Query: 148 VPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWG 207
           VP+ +RR+ C K GGIRFT+NGHSYFNLVLITNVGGAGD+ +VSIKGSK+ WQAMSRNWG
Sbjct: 141 VPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWG 200

Query: 208 QNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF 254
           QNWQSNSYLNGQ+LSF++T SDGRTV SNN  P NW FGQT+ G QF
Sbjct: 201 QNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
PLN00050247 expansin A; Provisional 100.0
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.96
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.93
PLN00115118 pollen allergen group 3; Provisional 99.9
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.87
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.03
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.03
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.85
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.26
PRK10672361 rare lipoprotein A; Provisional 97.13
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 86.52
>PLN00050 expansin A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-70  Score=482.89  Aligned_cols=240  Identities=75%  Similarity=1.374  Sum_probs=223.3

Q ss_pred             HHHHHhhhcccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCC
Q 025347           15 FVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPK   94 (254)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~   94 (254)
                      ++.|++++-....+..+|..++|||||++++.++++|||||+++..++++.++||+|+++|++|..||+||||+|.+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~   87 (247)
T PLN00050          8 IVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNI   87 (247)
T ss_pred             HHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCc
Confidence            34445555555666778999999999999988999999999998888899999999999999999999999999977666


Q ss_pred             CcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecccCCceEEEEcCccceE
Q 025347           95 WCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN  174 (254)
Q Consensus        95 ~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~~~gni~~~v~~~~~w~  174 (254)
                      +|.+++|+|+|||+||+++..|+++++||++++.|||||..||.+||....|+|+|+||||+|+++|+|+|++++++||+
T Consensus        88 ~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~  167 (247)
T PLN00050         88 WCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFN  167 (247)
T ss_pred             ccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeE
Confidence            89988999999999999888888899999988999999999999999999999999999999999999999999989999


Q ss_pred             EEEEEeecCCcceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEcCccCCCCcCCeEEeCCCC
Q 025347          175 LVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF  254 (254)
Q Consensus       175 av~v~n~~G~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~~vip~~w~~g~~Y~s~~~  254 (254)
                      +|+|.|++|+++|++|+||+++++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|++|+++||
T Consensus       168 ~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f  247 (247)
T PLN00050        168 LVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF  247 (247)
T ss_pred             EEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence            99999999999999999999877899999999999999888887799999999999999999999999999999999998

>PLN00193 expansin-A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 1e-15
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 2e-13
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 34/236 (14%)
Query: 27  DYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSC 84
           +Y G W +  AT+Y               G  N+    Y   TA  +  +F +G  CGSC
Sbjct: 14  NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73
Query: 85  YEMKCENDPKWCL--PGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ 142
           YE++C+  P+ C   P ++ +T  N+ P  +A              HFD++  AF  +A+
Sbjct: 74  YEVRCKEKPE-CSGNPVTVYITDMNYEP--IA------------PYHFDLSGKAFGSLAK 118
Query: 143 -------YRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN----LVLITNVGGAGDVHSVS 191
                     GI+ + FRR+ C    G +   +     N     VL+  V   GD+  + 
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178
Query: 192 IKGSKTG-WQAMSRNWGQNWQSNS--YLNGQSLSFQLTASDGRTVTSNNVVPGNWQ 244
           I+   +  W+ M  +WG  W+ ++   L G   S +LT+  G+ V + +V+P NW+
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWR 233
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 8e-75
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 2e-71
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 3e-63
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 5e-34
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 6e-34
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 4e-31
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 5e-25
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  226 bits (578), Expect = 8e-75
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 31/246 (12%)

Query: 26  GDYGGGWQSGHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGS 83
            +Y G W +  AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CGS
Sbjct: 13  TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGS 72

Query: 84  CYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ 142
           CYE++C+  P+      ++ +T  N+ P                  HFD++  AF  +A+
Sbjct: 73  CYEVRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAK 118

Query: 143 -------YRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN----LVLITNVGGAGDVHSVS 191
                     GI+ + FRR+ C    G +   +     N     VL+  V   GD+  + 
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178

Query: 192 IKGSKTG-WQAMSRNWGQNWQSNSYLN-GQSLSFQLTASDGRTVTSNNVVPGNWQFGQTF 249
           I+   +  W+ M  +WG  W+ ++        S +LT+  G+ V + +V+P NW+    +
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVY 238

Query: 250 EGG-QF 254
               QF
Sbjct: 239 TSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.97
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.94
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.65
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.27
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.04
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.9
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.85
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.81
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.75
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.69
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 93.33
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=2.1e-63  Score=439.64  Aligned_cols=212  Identities=29%  Similarity=0.640  Sum_probs=189.8

Q ss_pred             cCCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCCCcCCCcEEEE
Q 025347           27 DYGGGWQSGHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVT  104 (254)
Q Consensus        27 ~~~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~v~  104 (254)
                      .+.++|+.|+||||+++++.++  ++|||||++++..+++.++||+|+++|++|..||+||||+|.+.+ .|.+++|+|+
T Consensus        14 ~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~-~C~~~~v~V~   92 (241)
T 1n10_A           14 TYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE-ACSGEPVVVH   92 (241)
T ss_dssp             BCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSST-TBCSCCEEEE
T ss_pred             cccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCC-ccCCCCEEEE
Confidence            3788999999999999887776  799999999887888999999999999999999999999998754 6998999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhc-------ccCCccceeEEEeecccCC--ceEEEEc--Cccce
Q 025347          105 ATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG--GIRFTVN--GHSYF  173 (254)
Q Consensus       105 V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~-------~~~G~v~i~w~~V~C~~~g--ni~~~v~--~~~~w  173 (254)
                      |||+|+            |.++..|||||+.||.+||.       +..|+++|+||||+|+++|  ||+|+++  +++||
T Consensus        93 VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~  160 (241)
T 1n10_A           93 ITDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY  160 (241)
T ss_dssp             EEEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTE
T ss_pred             EeEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcce
Confidence            999996            65567999999999999999       6899999999999999984  8999999  58999


Q ss_pred             EEEEEEeecCCcceEEEEEEccC-CceeEccCCCCceEEeCCC--CCCcceEEEEEEcCCcEEEEcCccCCCCcCCeEEe
Q 025347          174 NLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSY--LNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFE  250 (254)
Q Consensus       174 ~av~v~n~~G~~~I~sVeI~~~g-~~W~~m~r~~g~~W~~~~~--l~g~pl~vRiTs~~G~~v~~~~vip~~w~~g~~Y~  250 (254)
                      ++|+|.|++|.++|++|||++++ +.|++|+|+||++|+++..  |.+ ||+||||+.+|++|+++||||++|++|++|+
T Consensus       161 ~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~  239 (241)
T 1n10_A          161 LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE  239 (241)
T ss_dssp             EEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEE
T ss_pred             EEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEe
Confidence            99999999999999999999987 6899999999999998874  777 9999999999999999999999999999999


Q ss_pred             CC
Q 025347          251 GG  252 (254)
Q Consensus       251 s~  252 (254)
                      ++
T Consensus       240 ~~  241 (241)
T 1n10_A          240 SK  241 (241)
T ss_dssp             C-
T ss_pred             CC
Confidence            84
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 7e-49
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 4e-47
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 6e-35
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 2e-29
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  157 bits (397), Expect = 7e-49
 Identities = 34/173 (19%), Positives = 48/173 (27%), Gaps = 38/173 (21%)

Query: 30  GGWQSGHATFYGGGDASGTMGGACGYGNL-----YSQGYGTNTAALSTALFNN------G 78
            G      T Y          GACG G       +    G+  AA S   F++      G
Sbjct: 12  NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 79  LSCGSCYEMKCENDPKWCLPG------SIIVTATNFCPPNLALSNDNGGWCNPPLQ---- 128
             CG C ++           G      S     TN CP        N  WCN   Q    
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGH 122

Query: 129 -------HFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 174
                  H D+ E    Q+          ++  + C  +         +S + 
Sbjct: 123 NKYGYELHLDL-ENGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.93
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.64
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 90.0
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=2.5e-36  Score=245.60  Aligned_cols=124  Identities=32%  Similarity=0.659  Sum_probs=105.4

Q ss_pred             cccCCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCCCcCCCcEE
Q 025347           25 FGDYGGGWQSGHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSII  102 (254)
Q Consensus        25 ~~~~~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~  102 (254)
                      ++.|.++|++|+||||+++++.++  .+|||||++++..+++.++||+|+.+|++|..||+||||+|.+ +.+|.+++|+
T Consensus        10 ~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~sv~   88 (143)
T d1n10a2          10 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVV   88 (143)
T ss_dssp             CCBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSCCEE
T ss_pred             ccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCCCEE
Confidence            345889999999999998776553  4799999998877889999999999999999999999999987 4689889999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcc-------cCCccceeEEEeecccCC
Q 025347          103 VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-------RAGIVPISFRRIPCAKKG  161 (254)
Q Consensus       103 v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~-------~~G~v~i~w~~V~C~~~g  161 (254)
                      |+|||.||+           |. +.+|||||+.||.+||..       +.|+|+|+||||+|+++|
T Consensus        89 V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          89 VHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999999996           33 468999999999999985       679999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure