Citrus Sinensis ID: 025348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHEEEEEHHHcccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVPAILMNIFVTAINQlsdveidkvnkphlplasgdfsigEGVAIAVISTMTLQSVAMGImlrspplfiGLITWWIVGAAYsidlpllrwkgspLMAAVTIMILNGLLLQFPYFVHVQKYvlgrpleftkpLLFAAAFMGIFNIAIAFvkdlpdvegdkefglrtlpvilgkEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTrtidlsdaksMQSLYMFIFKLYYAEFFLIHFIR
Flexible Loop (DISEMBL)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGlrtlpvilgKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Low Complexity Region (SEG)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Disordered region (IsUnstruct)
***AILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFI*
Disordered Region (DISOPRED)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Disordered Region (DISEMBL)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Disordered Region (DISPRO)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFKLYYAEFFLIHFIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.992	0.641	0.476	3e-70
B7FA90	404	Probable homogentisate ph	yes	no	0.992	0.623	0.484	7e-67
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.992	0.614	0.429	2e-55
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.992	0.616	0.448	4e-55
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.937	0.616	0.330	2e-26
Q0D576	379	Probable homogentisate ph	no	no	0.948	0.635	0.304	1e-23
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.618	0.519	0.322	2e-09
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.523	0.476	0.294	1e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.594	0.547	0.295	5e-08
A2SRL0	282	Digeranylgeranylglyceryl	yes	no	0.570	0.514	0.275	2e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 121/254 (47%), Positives = 189/254 (74%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++ ++ S  +G 
Sbjct: 142 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAI--VASFSIMSFWLGW 199

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF   V
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           ++L MAY  AIL GA+SPF+  K+++++GH +L   LW + +++DLS    + S YMFI+
Sbjct: 320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ L+ F++
Sbjct: 380 KLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  253 bits (647), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 180/254 (70%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A+ MNI++  +NQL D+EIDKVNKP LPLASG++S   GVA+  +S     S  +G 
Sbjct: 153 VVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVAL--VSAFAAMSFGLGW 210

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
            + S PLF+ L   +I+G AYSI+LP LRWK S ++AA+ I+ +  +++Q  +F+H+Q +
Sbjct: 211 AVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTF 270

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V  RP  FT+PL+FA AFM  F++ IA  KD+PD+EGD+ FG+++  V LG++KVF I V
Sbjct: 271 VFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICV 330

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
            +L MAY  AIL GA+S  L  K  T++GH++L  ILW+++R+IDL+   ++ S YMFI+
Sbjct: 331 GLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIW 390

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ LI  +R
Sbjct: 391 KLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/254 (42%), Positives = 164/254 (64%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V  I ++IF   +NQL D+EIDK+NKP LPLASG  S    V I   S++ L  +    
Sbjct: 159 VVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSF-RNVVIITASSLIL-GLGFAW 216

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  +    +V +AY++DLPLLRWK  P++ A+  +    +     +F+H+Q  
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V  RP  F +PL+F  A + I+ I IA  KD+PD+EGD++FG+++L + LG ++VF I V
Sbjct: 277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           S+L M YG  IL GA+SP L  K++T++GH+VL  +LW+  +++DL+    + S YMFI+
Sbjct: 337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query: 241 KLYYAEFFLIHFIR 254
           KL+ AE+FLI   R
Sbjct: 397 KLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 157/254 (61%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           ++P + + I++  +NQL D+EIDK+NKPHLP+ASG FS   GV I+  +     S     
Sbjct: 158 VLPQLFIEIYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIIS--AAFLALSFGFTW 215

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           +  S PL   L+       AYSID+PLLRWK  P +AA+ ++    L L   YF H+Q  
Sbjct: 216 ITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTV 275

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VL RP+ F + L F  AFM  +++ +A  KD+PDVEGDKE G+ +  V LG+++ F I V
Sbjct: 276 VLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICV 335

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           S   MA+G  IL GAS      K+ T +G++VL  ILW+Q +++DLSD  S  S YMFI+
Sbjct: 336 SFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIW 395

Query: 241 KLYYAEFFLIHFIR 254
           KL YA FFL+  IR
Sbjct: 396 KLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 133/257 (51%), Gaps = 19/257 (7%)

Query: 5   ILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEG------VAIAVISTMTLQSVAM 58
           I  N ++  INQ+ D+ IDKVNKP+LP+A+GD S+          AIA +  +       
Sbjct: 141 ICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPF 200

Query: 59  GIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQ 118
              L S  LF+G I        YS+  P LR K  P+ A + I  + G LL F  + H  
Sbjct: 201 ITSLYSLGLFLGTI--------YSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HAT 249

Query: 119 KYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSI 178
           +  LG P +++ P+ F  +F+ +F + IA  KDLPDVEGD++F + TL   LG   +  +
Sbjct: 250 RAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL 309

Query: 179 SVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD--AKSMQSLY 236
              +LL+ Y +AI      P +    + +  H +L   L  QT  ++ ++   +++   Y
Sbjct: 310 GSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYY 369

Query: 237 MFIFKLYYAEFFLIHFI 253
            FI+ L+YAE+ L  F+
Sbjct: 370 RFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 9/250 (3%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V  I  N ++  INQ+ D+ IDKVNKP+LP+A+GD S+     + V+      S+   +
Sbjct: 130 LVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI---V 186

Query: 61  MLRSPPLFIGLITWWI-VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQK 119
           +    P    L    + +G  YS+  P  R K  P+ A + I  + G LL F  + +  +
Sbjct: 187 VTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATR 243

Query: 120 YVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSIS 179
             LG   +++ P+ F   F+ +F + IA  KDLPDVEGD+++ + TL   LG   +  + 
Sbjct: 244 AALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLG 303

Query: 180 VSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD--AKSMQSLYM 237
             +L+  Y AAI      P    + V +  H+ L   +  QT  ++ +     ++   Y 
Sbjct: 304 SGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYR 363

Query: 238 FIFKLYYAEF 247
           FI+ L+YAE+
Sbjct: 364 FIWNLFYAEY 373

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 23/180 (12%)

Query: 13  AINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLI 72
           A N   D  +D VN+P  P+ SG      G+ IA++  MT+ S+A+G ML   P   G  
Sbjct: 69  AANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALL--MTVLSLAVGWMLG--PWGFGAT 124

Query: 73  TWWIVGA-AYSIDLPLLR---WKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEF 128
            + ++ A AYS++   L+   W G  L+A    +   GL    P+F        G P  F
Sbjct: 125 VFGVLAAWAYSVEPIRLKRSGWWGPGLVA----LCYEGL----PWFTGAAVLSAGAPSFF 176

Query: 129 --TKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMA 186
             T  LL+A    GI  +      D   +EGD++ G+R+LPV+LG E    ++ +++ MA
Sbjct: 177 IVTVALLYAFGAHGIMTL-----NDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMA 231

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 40/173 (23%)

Query: 14  INQLSDVEIDKVNKPHLPLASGDFSIGE-----------GVAIAVISTMTLQSVAMGIML 62
           IN + DVEID++N+P  P+ +GD S+             G+AIA ++T    ++A+   +
Sbjct: 54  INDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAI---I 110

Query: 63  RSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFP-YFVHVQKYV 121
            S  L +           Y++     R K +P++  V +  L G +  F   F  ++  V
Sbjct: 111 NSVILIV-----------YAV-----RLKRTPVLGNVAVAYLAGSVFLFGGAFAGIEGLV 154

Query: 122 LGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEK 174
             R L         AA   +  IA   +KD  DV+GD   G RTLP+I+G  K
Sbjct: 155 --RNLSL-------AAITFLATIARELLKDAEDVDGDAAGGARTLPMIVGVRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 12  TAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGL 71
             IN   D EIDK+N+P  PL  G  ++G  VA+     +    +A+  M+      +G+
Sbjct: 54  NTINDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGV 111

Query: 72  ITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKP 131
           I +        + + +  WK  PL   V  +++ GL    P +  V    LG        
Sbjct: 112 IAY--------VTMFIYAWKLKPL-PFVGNIVVAGLTGATPLYGAVAVEHLG-----LAG 157

Query: 132 LLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
            L   AF+   N+A   +KD+ DVEGD   G +TLP+I GK++   + V
Sbjct: 158 YLAICAFL--VNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGV 204

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=Mlab_0795 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 40/185 (21%)

Query: 14  INQLSDVEIDKVNKPHLPLASGDFS-----------IGEGVAIAVISTMTLQSVAMGIML 62
           +N   D+EIDKVN+P  P+ SG  S              GVA A  + +   ++A+    
Sbjct: 54  LNDYFDLEIDKVNRPDRPIPSGKVSPKGAVVWAGILFAAGVAAACFTNIWCLAIAL---- 109

Query: 63  RSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYF-VHVQKYV 121
                 + ++   I  A         ++KG P +  +++  L+G +  F  F V  + ++
Sbjct: 110 ------VNVVLLIIYAA---------KFKGIPFLGNLSVAYLSGSIFLFGGFLVGPESFL 154

Query: 122 LGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVS 181
           +  PL       FA  F G   +A   +KD  D+EGD+  G RTLP+ +G  K   ++V 
Sbjct: 155 VMLPL-------FAITFFG--TLARELLKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVI 205

Query: 182 MLLMA 186
            +L A
Sbjct: 206 FVLFA 210

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
359476155	397	PREDICTED: probable homogentisate phytyl	0.992	0.634	0.527	2e-72
295656253	401	homogentisate geranylgeranyl transferase	0.992	0.628	0.5	2e-70
219842170	411	homogentisate geranylgeranyl transferase	0.992	0.613	0.519	3e-70
224143266	284	predicted protein [Populus trichocarpa]	0.940	0.841	0.535	5e-70
377657555	394	homogentisate phytyltransferase [Brassic	0.992	0.639	0.488	1e-69
297836742	393	predicted protein [Arabidopsis lyrata su	0.992	0.641	0.476	8e-69
147858275	406	hypothetical protein VITISV_043992 [Viti	0.992	0.620	0.5	9e-69
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.992	0.641	0.476	2e-68
377657557	394	homogentisate phytyltransferase [Brassic	0.992	0.639	0.484	2e-68
56126261	406	homogentisate geranylgeranyl transferase	0.992	0.620	0.492	2e-68

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/254 (52%), Positives = 186/254 (73%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           MVP++LMNI+V  +NQ+ DVEIDKVNKP LPLASGDFS+  G  I  IS   L SV MGI
Sbjct: 146 MVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISL--LMSVGMGI 203

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           M +SPPLF  L+  +++G AYSI++PLLRWK  PL+AA  I+I+  +++Q  +F H+QK+
Sbjct: 204 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 263

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VLGR + +TK ++F  AFM  F+  IA  KD+PDV+GD+EFG+++  V LG++KVF + V
Sbjct: 264 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 323

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           +MLLMAYGAA + GASS  +  K  T+  H  L  +LW + +++DLS  +++ S YMFI+
Sbjct: 324 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 383

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+FLI  +R
Sbjct: 384 KLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 186/254 (73%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           ++P+I MNI+V  +NQL DVEIDKVNKP+LPLASG++S+G G AI  +S   L S AMGI
Sbjct: 150 LIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGEYSMGLGKAI--VSAFGLMSFAMGI 207

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           + +SPP+F  L+  ++ G+AYS++LPLLRWK +  +AA +I+++  + +   +F H+QKY
Sbjct: 208 VFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKY 267

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VLGRP+ F + L FA   + +F   IA  KD+PDV+GD++FG+++  V LG+++VF + +
Sbjct: 268 VLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCI 327

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
            +LL+AY +A++ GASS FLL KLVT+IGH  L  ILW +  +++L D  SM S YM I+
Sbjct: 328 GILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIW 387

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ LI F+R
Sbjct: 388 KLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/256 (51%), Positives = 189/256 (73%), Gaps = 4/256 (1%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +VP++LMNI+V  +NQL DVEIDKVNKP+LPLASG FS+  G+ I  +S   L S+ MGI
Sbjct: 158 LVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFSMATGILI--VSASLLLSLYMGI 215

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
             +SPPL   L+  + +G+ YSI+LP LRWK    +AA  I+I+  +++Q  +FVH+QK+
Sbjct: 216 TFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKF 275

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VLG+ +   + L+FA AFM  F+ AIA  KD+PDVEGD+++G+++  V LG+E+V  + V
Sbjct: 276 VLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCV 335

Query: 181 SMLLMAYGAAILTGASSP--FLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238
           +MLL+AYGAA++ GASSP   L  KL+TMIGHS + +ILW + + +DL+  KS+ S YMF
Sbjct: 336 NMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMF 395

Query: 239 IFKLYYAEFFLIHFIR 254
           I+KL+YAE+FLI F+R
Sbjct: 396 IWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 179/241 (74%), Gaps = 2/241 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +VP++LMNI+V  +NQL DVEIDKVNKP+LPLASGDFS+G GVAI  +S   L S AMGI
Sbjct: 46  LVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGDFSMGTGVAI--VSASLLASFAMGI 103

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           M +SP LF  L+   ++G+ YSI+LP LRWK    +AA  IMI+  +++Q  +FVH+QK+
Sbjct: 104 MFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKF 163

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VLG+    T+ L+FA AFM  F+  IA  KD+PDV+GD+++G+++  V LG+E+VF + V
Sbjct: 164 VLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCV 223

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           +MLL+AYGAA++ GASS FL  K +T++GH  L FILW + R++DL+   S+ S YMFI+
Sbjct: 224 NMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIW 283

Query: 241 K 241
           K
Sbjct: 284 K 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/254 (48%), Positives = 189/254 (74%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++ ++ S  +G 
Sbjct: 143 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAI--VASFSIMSFWLGW 200

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +I+G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct: 201 IVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 260

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+E+VF   V
Sbjct: 261 VFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWTCV 320

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           S+L MAY  AIL GA+SPF+  K+++++GH +L   LW + +++DLS    + S YMFI+
Sbjct: 321 SLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIW 380

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ L+ F++
Sbjct: 381 KLFYAEYLLLPFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/254 (47%), Positives = 189/254 (74%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++ ++ S  +G 
Sbjct: 142 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAI--VASFSIMSFWLGW 199

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF   +
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCI 319

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           S+L MAY  AIL GA+SPF+  K+++++GH +L   LW + +++DLS    + S YMFI+
Sbjct: 320 SLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIW 379

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ L+ F++
Sbjct: 380 KLFYAEYLLLPFLK 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 188/254 (74%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A+LMNI++  +NQ+SD+EIDKVNKP+LPLASG++S+G GV I  +++  + S  +G 
Sbjct: 155 VVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGI--VTSFAVMSFLVGW 212

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSIDLPLLRWK   L+AA+ I+ +  +++Q  +++HVQ +
Sbjct: 213 IVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTF 272

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP  F++PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF I +
Sbjct: 273 VYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRVFWICI 332

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
            +L MAYGAA+  GA+S  L  KLVT++GH+VL  ILW + ++IDL    ++ S YMFI+
Sbjct: 333 LLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSFYMFIW 392

Query: 241 KLYYAEFFLIHFIR 254
           +L+YAE+FLI  +R
Sbjct: 393 QLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/254 (47%), Positives = 189/254 (74%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++ ++ S  +G 
Sbjct: 142 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAI--VASFSIMSFWLGW 199

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF   V
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           ++L MAY  AIL GA+SPF+  K+++++GH +L   LW + +++DLS    + S YMFI+
Sbjct: 320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ L+ F++
Sbjct: 380 KLFYAEYLLLPFLK 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657557|gb|AFB74212.1| homogentisate phytyltransferase [Brassica napus]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 187/254 (73%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++  + S  +G 
Sbjct: 143 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAI--VASFFIMSFWLGW 200

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +I+G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct: 201 IVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 260

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF   V
Sbjct: 261 VFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 320

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           S+L MAY  AIL GA+SPF+  K ++++GH +L   LW + +++DLS    + S YMFI+
Sbjct: 321 SLLQMAYAVAILVGATSPFIWSKFISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIW 380

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+ L+ F++
Sbjct: 381 KLFYAEYLLLPFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 187/254 (73%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +V A+LMNI++  +NQ+SD+EIDKVNKP+LPLASG++S+G GV I  +++    S  +G 
Sbjct: 155 VVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGI--VTSFAFMSFLVGW 212

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSIDLPLLRWK   L+AA+ I+ +  +++Q  +++HVQ +
Sbjct: 213 IVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTF 272

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           V GRP  F++PL+FA AFM  F++ IA  KD+PD+EGD+ FG+R+  V LG+++VF I +
Sbjct: 273 VYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRVFWICI 332

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
            +L MAYGAA+  GA+S  L  KLVT++GH+VL  ILW + +++DL    ++ S YMFI+
Sbjct: 333 LLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSFYMFIW 392

Query: 241 KLYYAEFFLIHFIR 254
           +L+YAE+FLI  +R
Sbjct: 393 QLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.992	0.641	0.476	3.6e-66
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.992	0.614	0.429	8e-53
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.992	0.619	0.429	1e-52
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.972	0.628	0.320	6.2e-30
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.736	0.483	0.260	5.1e-05
TIGR_CMR|BA_5113	317	BA_5113 "1,4-dihydroxy-2-napht	0.637	0.511	0.225	0.0005

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 121/254 (47%), Positives = 189/254 (74%)

Query:     1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
             +V A++MNI++  +NQLSDVEIDKVNKP+LPLASG++S+  G+AI  +++ ++ S  +G 
Sbjct:   142 VVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAI--VASFSIMSFWLGW 199

Query:    61 MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
             ++ S PLF  L   +++G AYSI+LPLLRWK   L+AA+ I+ +  +++Q  +++H+Q +
Sbjct:   200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query:   121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
             V GRP+ FT+PL+FA AFM  F++ IA  KD+PD+EGDK FG+R+  V LG+++VF   V
Sbjct:   260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query:   181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
             ++L MAY  AIL GA+SPF+  K+++++GH +L   LW + +++DLS    + S YMFI+
Sbjct:   320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query:   241 KLYYAEFFLIHFIR 254
             KL+YAE+ L+ F++
Sbjct:   380 KLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 109/254 (42%), Positives = 164/254 (64%)

Query:     1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
             +V  I ++IF   +NQL D+EIDK+NKP LPLASG  S    V I   S++ L  +    
Sbjct:   159 VVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSF-RNVVIITASSLIL-GLGFAW 216

Query:    61 MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
             ++ S PLF  +    +V +AY++DLPLLRWK  P++ A+  +    +     +F+H+Q  
Sbjct:   217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query:   121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
             V  RP  F +PL+F  A + I+ I IA  KD+PD+EGD++FG+++L + LG ++VF I V
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
             S+L M YG  IL GA+SP L  K++T++GH+VL  +LW+  +++DL+    + S YMFI+
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query:   241 KLYYAEFFLIHFIR 254
             KL+ AE+FLI   R
Sbjct:   397 KLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 109/254 (42%), Positives = 165/254 (64%)

Query:     1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
             +V  I ++IF   +NQL D+EIDK+NKP LPLASG+ S    V I   S++ L  +    
Sbjct:   156 VVAVICIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSF-RNVVIITASSLIL-GLGFAW 213

Query:    61 MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
             ++ S PLF  +    +  AAY++DLPLLRWK  P++ A++ +    +     +F+H+Q  
Sbjct:   214 IVGSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTC 273

Query:   121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
             V  RP  F +PL+F  A + I+ I IA  KD+PD+EGD++FG+++L + LG ++VF I V
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
             S+L MAYG  IL GA+SP L  K++T++GH++L  +LW+  ++ DL+    +QS YMFI+
Sbjct:   334 SLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIW 393

Query:   241 KLYYAEFFLIHFIR 254
             KL+ AE+ LI   R
Sbjct:   394 KLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 82/256 (32%), Positives = 136/256 (53%)

Query:     1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
             ++  I  N ++  INQ+ D+ IDKVNKP+LP+A+GD S+ +   + VI       + +G 
Sbjct:   144 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSV-QSAWLLVIFFAIAGLLVVGF 202

Query:    61 MLRSPPLFIGLITWWI-VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQK 119
                  P    L +  + +G  YS+  P LR K  P+ A + I  + G LL F  + H  +
Sbjct:   203 NFG--PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATR 257

Query:   120 YVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSIS 179
               LG P +++ P+ F  +F+ +F + IA  KDLPDVEGD++F + TL   LG   +  + 
Sbjct:   258 AALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLG 317

Query:   180 VSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD--AKSMQSLYM 237
               +LL+ Y +AI      P +    + +  H +L   L  QT  ++ ++   +++   Y 
Sbjct:   318 SGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYR 377

Query:   238 FIFKLYYAEFFLIHFI 253
             FI+ L+YAE+ L  F+
Sbjct:   378 FIWNLFYAEYLLFPFL 393

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 54/207 (26%), Positives = 88/207 (42%)

Query:    10 FVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAM-GIM-----LR 63
             +   IN   D +ID +N+P+ P+ SG  +I E   I  +  + L  + + GI+       
Sbjct:   150 YTQTINDWYDRDIDAINEPYRPIPSG--AISEPEVITQVWVLLLGGLGIAGILDVWAGHT 207

Query:    64 SPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLG 123
             +P +F   +   ++   YS   P L+ K +     V    L    +  P++     +   
Sbjct:   208 TPTVFYLALGGSLLSYIYSA--PPLKLKQN---GWVGNFALGASYISLPWWAGQALFGTL 262

Query:   124 RPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSML 183
              P      LL++ A +GI     A V D   VEGD+  GL++LPV  G E    I V  +
Sbjct:   263 TPDVVVLTLLYSIAGLGI-----AIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAI 317

Query:   184 LMAY--GAAILTGASSPFLLCKLVTMI 208
              +     A  L  +  P+    LV +I
Sbjct:   318 DITQLSVAGYLLASGKPYYALALVALI 344

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

TIGR_CMR|BA_5113 BA_5113 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 112 (44.5 bits), Expect = 0.00050, P = 0.00050
 Identities = 40/177 (22%), Positives = 77/177 (43%)

Query:    35 GDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLI-----TWWIVGAAYSIDLPLLR 89
             G   IG  +    I   T+ ++A G       + +G+      +WW+             
Sbjct:    93 GSVGIGGAIVRDGIQPKTVLNLAFGFF--GIAILLGVYICMNSSWWLAAIGLVCMAVAYL 150

Query:    90 WKGSPLMAAVTIM--ILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIA 147
             + G PL  A T    +  GL +     + +  ++    +  T  ++  +    I   AI 
Sbjct:   151 YTGGPLPIAYTPFGELTAGLFMGV-IIIGISFFIQTGTV--TSEVVLLSIPSSILIGAIL 207

Query:   148 FVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYG---AAILTGASSPFLL 201
                ++ D++GDKE G +TL +++G+E+   +  SM +++Y    A I+ G  SP++L
Sbjct:   208 LANNIRDLDGDKENGRKTLAILVGRERAVGVLASMFIVSYIWTIALIIVGIVSPWML 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      254       254   0.00084  114 3  11 22  0.48    32
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.68u 0.21s 19.89t   Elapsed:  00:00:02
  Total cpu time:  19.68u 0.21s 19.89t   Elapsed:  00:00:02
  Start:  Fri May 10 05:13:59 2013   End:  Fri May 10 05:14:01 2013

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-103
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-51
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	7e-16
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-15
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-11
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-10
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	3e-10
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	9e-09
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	2e-07
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	3e-07
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	5e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	9e-07
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	9e-07
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	3e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  301 bits (772), Expect = e-103
 Identities = 132/254 (51%), Positives = 187/254 (73%), Gaps = 2/254 (0%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI 60
           +VPA+LMNI++  +NQL D+EIDKVNKP+LPLASG+FS+  GVAI       + S  MG 
Sbjct: 29  LVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFA--IMSFGMGW 86

Query: 61  MLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           ++ S PLF  L   +++G AYSI+LPLLRWK S + AA  I+ +  +++Q  +F+H+Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
           VLGRP  FT+PL+FA AFM  F++ IA  KD+PDVEGD+ FG+R+  V LG+++VF + V
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206

Query: 181 SMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240
           ++L MAY AAIL GASS FL  K++T++GH +L  ILW + +++DLS   ++ S YMFI+
Sbjct: 207 NLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266

Query: 241 KLYYAEFFLIHFIR 254
           KL+YAE+FLI  +R
Sbjct: 267 KLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  170 bits (432), Expect = 1e-51
 Identities = 84/248 (33%), Positives = 144/248 (58%), Gaps = 6/248 (2%)

Query: 2   VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM 61
           +  +  N+++  +NQL+D+EID++NKPHLPLA+G+FS  +G  I +I+ +    +A    
Sbjct: 60  IACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAA--- 116

Query: 62  LRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYV 121
           L  P L I +    ++G AYS  LP +R K  PL+AA+ I  + G+++    F+H Q ++
Sbjct: 117 LLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WL 173

Query: 122 LGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVS 181
           LG  +     +     F+ +F  AIA  KD+PD+EGD+++ + T  + LGK+ VF +S  
Sbjct: 174 LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW 233

Query: 182 MLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFK 241
           +L   Y   I  G  S   +     ++ H +L  +LW +++ +DL D +++   Y FI+K
Sbjct: 234 VLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Query: 242 LYYAEFFL 249
           L++ E+ L
Sbjct: 294 LFFLEYLL 301

Length = 308

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 75.0 bits (185), Expect = 7e-16
 Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 22/249 (8%)

Query: 4   AILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM 61
             L       IN L+D EID++N    + PL SG  S+ E + +A+     L  +    +
Sbjct: 56  FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAI-----LLLLLGLAL 110

Query: 62  LRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYV 121
                L +  + + +  AA  + L     K    +  + + +  GL              
Sbjct: 111 A----LLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAA------ 160

Query: 122 LGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVS 181
           +G  L     LL  AA +  + +    +  + D+EGD++ GL++LPV+ G +K  ++++ 
Sbjct: 161 VGGSLPLLAWLLLLAAIL--WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALL 218

Query: 182 MLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFK 241
           +LL +    +L   +    L  L+ ++   V   +L +Q   +D+ D  +  +L+     
Sbjct: 219 LLLASALLVLLGLLAGLLGLIYLLGLL---VAALLLLYQILIVDVRDPPACFALFDVNLL 275

Query: 242 LYYAEFFLI 250
           L    F  +
Sbjct: 276 LGLLLFIGL 284

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 72.2 bits (177), Expect = 5e-15
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 20/244 (8%)

Query: 4   AILMNIFVTAINQLSDVEIDKV--NKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM 61
            +L+      +N   D EID    NKP  PL SG  S  E + + +   +    + + ++
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLL--GLLLALL 89

Query: 62  LRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYV 121
           L    L +GL+   ++G  YS   P LR K  PL+  + + +  GLL+          Y 
Sbjct: 90  LGPLLLLLGLL-GLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA------YA 139

Query: 122 LGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVS 181
           +G  +    PLL  A  + + ++AI    D+ DVEGD++ G+RTLPV LG+++  ++   
Sbjct: 140 VGGDIPS--PLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALAL--- 194

Query: 182 MLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIFK 241
              +   AA+L       LL  L+ ++   +L   L    R +   + +     ++FI  
Sbjct: 195 -YALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIAL 253

Query: 242 LYYA 245
           L+  
Sbjct: 254 LFGL 257

Length = 259

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 17/180 (9%)

Query: 13  AINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLI 72
           A+N   D E+D++N+P  P+ SG  S  E + +A++  + +  +    ++ SP  F+ +I
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAIL--LFILGLIAAYLI-SPLAFLVVI 111

Query: 73  TWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPL 132
              ++G  Y+  L     K   L+  + +  L G+   F          +G   E    +
Sbjct: 112 LVSVLGILYNWKL-----KEYGLIGNLYVAFLTGMTFIF------GGIAVGELNEA---V 157

Query: 133 LFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAIL 192
           +  AA   +  +    +KD+ DVEGD+  G RTL ++ G++    I+ ++ ++A   + L
Sbjct: 158 ILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPL 217

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 36/190 (18%)

Query: 13  AINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIG-- 70
           AIN   D EID++N+P  P+ SG  S    +A +++                  LF    
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSIL------------------LFAAGV 97

Query: 71  ---LITWWIVGAAYSIDLPLL-----RWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVL 122
               +   +  A    +  LL       KG+P +   ++  L G    F          +
Sbjct: 98  ALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAA------V 151

Query: 123 GRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSM 182
           G        +LFA A +     A   +KD+ D+EGD+  G RTLP+++G  K   ++ + 
Sbjct: 152 GTEGLLALLVLFALAALATL--AREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAF 209

Query: 183 LLMAYGAAIL 192
           LL+A  A+ L
Sbjct: 210 LLVAVAASPL 219

Length = 276

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 22/191 (11%)

Query: 6   LMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSP 65
           L   F  +IN   D ++D +N+P  P+ SG  S+ E     ++  +T+  + + ++L   
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLV--LTVAGLLVALVL-GN 105

Query: 66  PLFIGLITWWIVGAAYSIDLPLLR-----WKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
            L +      IV  A    +P ++     W G P +      +        P+      +
Sbjct: 106 WLIVLFTVVGIV-LAVIYSMPPIKLKRNGWLGPPAVGLSYEGL--------PWMAGHAIF 156

Query: 121 VLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
                      L+++    GI       + D   VEGD++ GLR+LPV++G ++   ++V
Sbjct: 157 APLTWQSVVVALIYSLGAHGI-----MTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAV 211

Query: 181 SMLLMAYGAAI 191
           + + +     I
Sbjct: 212 TTINVFQAMVI 222

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 20/211 (9%)

Query: 4   AILMNIFVTAINQLSDVEIDKVNKP-----HLPLASGDFSIGEGVAIAVISTMTLQSVAM 58
             L+   V  IN L+D+E D +NKP         A G F +   + + +          +
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLG-------AYL 97

Query: 59  GIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQ 118
             ++  P   +  I   I+G  YS+     R K  PL   + + +L  L        + Q
Sbjct: 98  LAVIGGPKFALIFIIPLILGILYSVFFKR-RLKRIPLFKNLVVSLLWALSPLILGVYYYQ 156

Query: 119 KYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSI 178
                  L     LL  A F+ + +     V D+ D+EGD++ GL+TLP++LGKE+    
Sbjct: 157 -------LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKF 209

Query: 179 SVSMLLMAYGAAILTGASSPFLLCKLVTMIG 209
            + + L+     IL   +    L  LV ++ 
Sbjct: 210 LLILNLLFLILLILGVYTGLLPLLLLVLLLL 240

Length = 285

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 64/238 (26%)

Query: 1   MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGE-----------GVAIAVI- 48
           ++    +  +   IN   D +ID +N+P+ P+ SG  S  E           G+AIA I 
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 49  ------STMTLQSVAMG-----IMLRSPPLFIGLITW---WIVGAAYSIDLPLLRWKGSP 94
                     +  +A+       +  +PPL +    W   + +GA+Y I LP   W G  
Sbjct: 120 DLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASY-IALPW--WAGHA 176

Query: 95  LMAAVT--IMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDL 152
           L   +   I +L                           L+++ A +G     IA V D 
Sbjct: 177 LFGELNPDIAVLT--------------------------LIYSIAGLG-----IAIVNDF 205

Query: 153 PDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYG--AAILTGASSPFLLCKLVTMI 208
             VEGD+  GL++LPV  G E    I V  + +  G  AA L           LV +I
Sbjct: 206 KSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 57/202 (28%)

Query: 13  AINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGI------------ 60
            +N   D E+D +N+P+ P+ SG  S+   + +  + T+   +VA  +            
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGL 142

Query: 61  ----MLRSPPLFIGLITWW---IVGAAYSIDLPLLRWKGSPLMAAV----TIMILNGLLL 109
               +  +PPL +    W     VG +Y   LP   W G+    A      I+IL     
Sbjct: 143 FLAWIYSAPPLRLKQNGWLGNYAVGLSY-EGLPW--WAGAAAFGAGLPSWPIVIL----- 194

Query: 110 QFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVI 169
                                 LL++    G     I  + D   VEGD++ GLR+LPV+
Sbjct: 195 ---------------------ALLYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVV 228

Query: 170 LGKEKVFSISVSMLLMAYGAAI 191
            G++    I+  ++ +   A I
Sbjct: 229 FGEKNAARIACVVIDLFQLAVI 250

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 22/176 (12%)

Query: 13  AINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLI 72
            IN + D+EIDK+NKP  P+ SG  S+ E    ++          +G++L    +FI + 
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSIT------LFIVGLILS---IFINIY 105

Query: 73  TWWIVGAAYSIDLPL--LRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTK 130
            + I     SI L L     K + L+  + +  L GL      F  +  + + R +    
Sbjct: 106 AFLIALLN-SILLYLYAKDLKKTGLIGNLIVAYLTGLSF---IFGGLAVFNVLRII---- 157

Query: 131 PLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMA 186
            +LF  AF      +   VKD+ D+EGD +  + TLP+  G +K + I+  +L++A
Sbjct: 158 -ILFLCAFF--STWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 26/171 (15%)

Query: 14  INQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLIT 73
           IN   D EIDK+N+P+ PL  G  ++    A+      +L   A+G+ L      I +  
Sbjct: 56  INDYFDYEIDKINRPNRPLPRG--AMSRKAAL----YYSLLLFAVGLAL---AYLINIEA 106

Query: 74  WWIVGAAYSIDLPLLRWKGSPL--MAAVTIMILNGLLLQFPYF--VHVQKYVLGRPLEFT 129
           +     AY + + L  WK  PL  +  V + +L G     P +  + V +  L   L   
Sbjct: 107 FLFALGAY-VLMFLYAWKLKPLPFIGNVVVALLTGAT---PIYGAIAVGRIGLAGYLAI- 161

Query: 130 KPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
                  AF+   N+A   +KD+ D+EGDK  G +TLP+I+GK++   I  
Sbjct: 162 ------CAFL--VNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA 204

Length = 277

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 74/230 (32%)

Query: 14  INQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML----------- 62
           IN   D EID +N+P+ P+ SG  +I E   I  I  + L  + +   L           
Sbjct: 142 INDWYDREIDAINEPYRPIPSG--AISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIV 199

Query: 63  --------------RSPPLFI---GLITWWIVGAAYSIDLPLLRWKGSPLMAAVT--IMI 103
                          +PPL +   G I  + +GA+Y I LP   W G  L   +T  +++
Sbjct: 200 FYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--WAGQALFGTLTPDVVV 256

Query: 104 LNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGL 163
           L                           LL++ A +GI     A V D   +EGD+  GL
Sbjct: 257 L--------------------------TLLYSIAGLGI-----AIVNDFKSIEGDRALGL 285

Query: 164 RTLPVILGKEK-----VFSISVSMLLMAYGAAILTGASSPFLLCKLVTMI 208
           ++LPV  G E      V SI ++ L +   A  L     P+    L+ +I
Sbjct: 286 QSLPVAFGVETAKWICVGSIDITQLSV---AGYLLAIGKPYYALALLGLI 332

Length = 375

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 23/188 (12%)

Query: 10  FVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML------- 62
           F  ++N   D+E+D+VN+P  P+ SG  S  E +  ++I  + L ++ +G+ L       
Sbjct: 65  FSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSII--VLLLAIGLGVWLGLHIGGE 122

Query: 63  RSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVL 122
           R   +   ++    V   YS   P L+ K + L +A  +    G +           ++ 
Sbjct: 123 RGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFI----------TFLS 170

Query: 123 GRPL--EFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180
              L  +    +++ A       IA+  + D   VEGDKE GL++L V++G +  F +S 
Sbjct: 171 ANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSF 230

Query: 181 SMLLMAYG 188
            ++ + + 
Sbjct: 231 IIIDLVFA 238

Length = 331

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 47/212 (22%)

Query: 2   VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM 61
            PA   N+F+  +N + D + D++N          +     V +AV  +  L   A+  +
Sbjct: 55  FPA---NVFLYGVNDVFDADTDELNPKKDREREVRYRGDRRVLVAVALSGAL---ALAFL 108

Query: 62  LRSPPL-FIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKY 120
           L  PP  +  L+ + ++   YS   P LR+K +P++ +++    NGL            Y
Sbjct: 109 LVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLS----NGL------------Y 150

Query: 121 VLGRPLEFT-------KPLLFAAAF-----MGIFNIAIAFVKDLPDVEGDKEFGLRTLPV 168
           +L     +          L  A  +     M  F+ AI      PD+E D+  G+RT   
Sbjct: 151 ILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFS-AI------PDIEPDRAAGIRTTAT 203

Query: 169 ILGKEKVFSISVSMLLMAYGAAILTGASSPFL 200
           +LG+ + ++   +  L    AA    A    L
Sbjct: 204 VLGERRTYAYCAACWL---LAAAAFAAVDLRL 232

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PLN00012	375	chlorophyll synthetase; Provisional	99.98
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.98
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.98
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.96
PRK13591	307	ubiA prenyltransferase; Provisional	99.95
PLN02776	341	prenyltransferase	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.94
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
PLN02922	315	prenyltransferase	99.94
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
PRK12875	282	ubiA prenyltransferase; Reviewed	99.92
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.75
PRK08238	479	hypothetical protein; Validated	99.69
KOG4581	359	consensus Predicted membrane protein [Function unk	99.33
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.25
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	92.47
PRK13591	307	ubiA prenyltransferase; Provisional	90.63
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.27
PLN02922	315	prenyltransferase	89.05
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.94
PRK12872	285	ubiA prenyltransferase; Reviewed	88.66
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	88.37
PRK12884	279	ubiA prenyltransferase; Reviewed	87.95
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	86.75
PRK12875	282	ubiA prenyltransferase; Reviewed	85.51
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.79
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	84.56
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	84.49
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	83.95
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	83.86
PRK13105	282	ubiA prenyltransferase; Reviewed	83.86
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	83.72
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	83.07
PLN00012	375	chlorophyll synthetase; Provisional	82.55
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	82.16
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	81.8
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	81.64
PRK13592	299	ubiA prenyltransferase; Provisional	80.4
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	80.33

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.5e-56  Score=379.45  Aligned_cols=252  Identities=52%  Similarity=0.947  Sum_probs=228.4

Q ss_pred             ChHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhH
Q 025348            1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAA   80 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~   80 (254)
                      ++++++++.....+||++|+|+||+|||+||+|||++|+++++.....+  .++|+.+++.+|++++..+...++++++.
T Consensus        29 ~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~--~~lg~~la~~~g~~~l~~al~~~~~lg~~  106 (280)
T PLN02878         29 LVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSF--AIMSFGMGWIVGSWPLFWALFVSFVLGTA  106 (280)
T ss_pred             HHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999888  88999999999987777766677789999


Q ss_pred             hcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHH
Q 025348           81 YSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKE  160 (254)
Q Consensus        81 Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~  160 (254)
                      ||...||+|+||+++....+..+.++..+.+|++.+.++..+|.+...+.+.++..+++.+...+++++||++|+||||+
T Consensus       107 YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~  186 (280)
T PLN02878        107 YSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRI  186 (280)
T ss_pred             HHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHH
Confidence            99777999999999999888877788888899999888888886555555666555567778889999999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Q 025348          161 FGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF  240 (254)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~  240 (254)
                      .|+||+|+++|+|++++++..++.++|+..+..|..++..+...+...+|.+++..+++|.+++|++++++..+|||+||
T Consensus       187 ~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiw  266 (280)
T PLN02878        187 FGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW  266 (280)
T ss_pred             CCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999998888888877777778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q 025348          241 KLYYAEFFLIHFIR  254 (254)
Q Consensus       241 ~~~~~~~~~~~~~~  254 (254)
                      |+||+||+++|+.|
T Consensus       267 klfy~ey~l~p~~~  280 (280)
T PLN02878        267 KLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=3.7e-50  Score=353.31  Aligned_cols=247  Identities=33%  Similarity=0.603  Sum_probs=208.8

Q ss_pred             hHHHHHHHHHHH----hhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 025348            2 VPAILMNIFVTA----INQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIV   77 (254)
Q Consensus         2 ~~~~l~~~a~~~----~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~   77 (254)
                      +++++++.++|.    +||++|+|+|++|||+||++||++|++|++....++  .++++.+++..|+..+.. .+++.++
T Consensus        56 l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~--~~lal~la~~~~~~~~~~-~~~~~~l  132 (308)
T PRK12887         56 LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIIT--GILALILAALLGPWLLIT-VGISLLI  132 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence            345666777777    999999999999999999999999999999988888  888888888888665544 4678889


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      ++.||  .||+|+||+|.+++++.+..++.++..|.+.+.+. ..+...+.+.+.++..++.++|+.++++.||++|+|+
T Consensus       133 g~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg  209 (308)
T PRK12887        133 GTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG  209 (308)
T ss_pred             HHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            99999  58999999999999888878877666776654322 2222223455555666778899999999999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYM  237 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  237 (254)
                      |++.|+||+|+++|+|++.+++..++.++|+..+..+......+...++.++|.+.+.+++||.+++|.+||++..+|||
T Consensus       210 D~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  289 (308)
T PRK12887        210 DRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQ  289 (308)
T ss_pred             HHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence            99999999999999999999999999999988877766655555545556999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcC
Q 025348          238 FIFKLYYAEFFLIHFIR  254 (254)
Q Consensus       238 ~~~~~~~~~~~~~~~~~  254 (254)
                      +|||+||+||+++|++|
T Consensus       290 ~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        290 FIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999976

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-37  Score=269.73  Aligned_cols=218  Identities=16%  Similarity=0.146  Sum_probs=169.8

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||+.|+|+|++|+|  +||+|+|++|++||+.+...+  .++++.++..+|+.++.++ .....+..
T Consensus        44 ~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~--~~~~~~~~~~ln~l~~~l~-~~~~~l~~  120 (286)
T PRK12895         44 IAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF--IAIFEICTFLLNRLVFILS-PIVIFLFI  120 (286)
T ss_pred             HHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            577899999999999999999999966  799999999999999999998  8888888888898877654 34555555


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .|+      .+||++.++++..+...+..+.+|+.+     +.|. .......+++++...+|+.++|++|++||+|+|+
T Consensus       121 ~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~  188 (286)
T PRK12895        121 IDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDK  188 (286)
T ss_pred             HHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence            666      489999999865444444434444432     2232 1111223345566789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSM-QSLYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f~~~  238 (254)
                      |.|+||+|+++|+|++.++...++.++.......|.... ++   +|+++..+.+.++.||++.+|++|+++| .+||..
T Consensus       189 ~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~  264 (286)
T PRK12895        189 INGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNA  264 (286)
T ss_pred             HcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999999999999887777777777766666665543 33   5678888889999999999999999999 666643

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7e-37  Score=266.43  Aligned_cols=226  Identities=15%  Similarity=0.187  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+++|+++|++||++|+|+|++|+|  +||+|+|++|++|++.+...+  ..+++.++..+|+.++.+. .++.+...
T Consensus        46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~--~~~~l~l~~~l~~~~~~l~-~~~~~~~~  122 (284)
T PRK12888         46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVA--LAVFLGAAALLNPLCLALA-PLAVAPLV  122 (284)
T ss_pred             HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            688999999999999999999999985  799999999999999988877  6667777777787766554 34555677


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .|+.      .||++..++...++.++..+..+++.     ..|   ..+.+.+++.+..++|+.+++++|++||+|+|+
T Consensus       123 ~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~  188 (284)
T PRK12888        123 VYPY------AKRFTNFPHAILGLAQAVGPVGAWIA-----VTG---TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDR  188 (284)
T ss_pred             HHHH------hhcccchhhHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            8983      79999988877666665544445433     223   234455566677789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHH-HHH-H
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQ-SLY-M  237 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~-~  237 (254)
                      +.|+||+|+++|+|++.++...++.+++......+...+.++   .|+.+..+.+.++.||++.+|.+|++.|. .|| .
T Consensus       189 ~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  265 (284)
T PRK12888        189 RIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTA  265 (284)
T ss_pred             HCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            999999999999999988777777777766666666666665   56677888889999999999999977775 766 4


Q ss_pred             H------HHHHHHHHH
Q 025348          238 F------IFKLYYAEF  247 (254)
Q Consensus       238 ~------~~~~~~~~~  247 (254)
                      +      ++.++.+++
T Consensus       266 n~~ig~~~~~~~~~~~  281 (284)
T PRK12888        266 NGFVGIALFGFALLDL  281 (284)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            4      444444554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=2.5e-36  Score=263.27  Aligned_cols=216  Identities=18%  Similarity=0.176  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||++|+|+|++|+|  +||+|+|++|++||..+..++  .++++.+.+.+|+.++.++ .++.+..+
T Consensus        52 ~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~--~~~~~~~~~~l~~~~~~l~-~~~~~~~~  128 (289)
T PLN02809         52 CGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQ--LLLGLGILLQLNNYSRILG-ASSLLLVF  128 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            678999999999999999999999875  799999999999999998888  8888888887887766665 45667788


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHH-HHHHHHHHHHHHHHHhcCCCChhhh
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLL-FAAAFMGIFNIAIAFVKDLPDVEGD  158 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~e~D  158 (254)
                      .||.      +||++..+++..+..++....+++.     +..|.   .+.... .++....+|+..+++++++||+|+|
T Consensus       129 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D  194 (289)
T PLN02809        129 TYPL------MKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDD  194 (289)
T ss_pred             HHhH------HHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            9983      7999999887766655544444542     23332   222222 2455667899999999999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      +|.|+||+|+++|+|+..++. .+...++......|...+.++   ++++++.+.+.++.+|++.+|++|+++|.++|+.
T Consensus       195 ~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~  270 (289)
T PLN02809        195 LKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS  270 (289)
T ss_pred             HhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999999999999666655 456666666666676665555   5566888888999999999999999999887764

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.5e-36  Score=258.79  Aligned_cols=235  Identities=16%  Similarity=0.196  Sum_probs=174.5

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+.+|+++|++||+.|+|+|++|+|  +||+|+|++|++||+.+...+  .++++.++..+|+.+..++ .++.++.+
T Consensus        54 ~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~--~~~~~~l~~~ln~l~~~l~-~~~~~~~~  130 (300)
T PRK12876         54 SAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLC--SFLFLSLCWLLNPLCFSLA-VLSTLLMI  130 (300)
T ss_pred             HHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            688999999999999999999999996  799999999999999998876  6667777788898877775 45666778


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchH----HHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTK----PLLFAAAFMGIFNIAIAFVKDLPDV  155 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~  155 (254)
                      .||.      +||++..+++..+...+.....++.+     +.++.  .+.    ..+++.....+|+.++|++|++||+
T Consensus       131 iY~~------~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~  197 (300)
T PRK12876        131 IYPY------TKRVTFLCHWILGLVYYLAILMNFFA-----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDL  197 (300)
T ss_pred             HHHh------HhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            9983      89999999876655555433444432     23321  122    2233445566788899999999999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH--HHHhhhhccccchHHHH
Q 025348          156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFI--LWHQTRTIDLSDAKSMQ  233 (254)
Q Consensus       156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~d~~~~~~~~  233 (254)
                      |+|+|.|+||+|+++|++++.++...++.++...+.+.|...+.++  ..|..+..+.+..  +.+|.+.+|.++++.|.
T Consensus       198 e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  275 (300)
T PRK12876        198 EFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQ  275 (300)
T ss_pred             hhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence            9999999999999999998877777777777776666777666655  2344455433333  45555777878899999


Q ss_pred             HHHHH---HHHHHHHHHHhhhhcC
Q 025348          234 SLYMF---IFKLYYAEFFLIHFIR  254 (254)
Q Consensus       234 ~f~~~---~~~~~~~~~~~~~~~~  254 (254)
                      +||..   +-..+++.++..+..|
T Consensus       276 ~~F~~N~~ig~~~~~~~~~~~~~~  299 (300)
T PRK12876        276 KFFLGNIYLALSFFVNMIGLFLLR  299 (300)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHccC
Confidence            98875   4344456666666554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.7e-35  Score=258.32  Aligned_cols=219  Identities=18%  Similarity=0.251  Sum_probs=168.7

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||++|+|+|++|  +|+||+|+|++|++|+..+..++  .++++.++..+|+.+..+. ..+.++.+
T Consensus        43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~~~~~l~~~~~~l~-~~~~~~~~  119 (282)
T TIGR01475        43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS--LALFLSASYFLNPLAFILS-PLVLLVLI  119 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            6889999999999999999999999  45899999999999999998887  6667777777777666554 34556678


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      +||++..+++..+..++..+..|+..     ..|. .+...+.+...+...+|+.+.+++||+||+|+|+
T Consensus       120 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~  187 (282)
T TIGR01475       120 IYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDR  187 (282)
T ss_pred             HHhh------HhccccccHHHHHHHHHHHHHHHHHH-----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            8983      79999988877666666554455433     2222 1101334445566788999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH-HHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQS-LYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~-f~~~  238 (254)
                      +.|+||+|+++|+|++++.......+++......+...+.++   .|+++..+....+.++.+..|.+|+++|++ ||..
T Consensus       188 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       188 KNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             HcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999988887777777776666665555554   455566666788899999999999888876 4543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1e-35  Score=260.15  Aligned_cols=216  Identities=18%  Similarity=0.241  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||++|+|+|++|+|  +||+|+|++|++||..+..++  .++++.++..+|+.++.+. +.+.+..+
T Consensus        53 lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~l~-~~~~~~~~  129 (290)
T PRK12870         53 LGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVA--LLCAAGLAFFLNPLSFWLC-VAAVPVIF  129 (290)
T ss_pred             HHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            678899999999999999999987765  799999999999999999998  8888888888887776654 45666778


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      .||++..+++..+..++..+..++..     ..|   +.+.+.+++.+...+|+.+++++|++||+|+|+
T Consensus       130 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~  195 (290)
T PRK12870        130 LYPL------AKRVFPVPQLVLAIAWGFAVLISWSA-----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDL  195 (290)
T ss_pred             Hhhh------hhhccccceeeehHHHHhHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            8984      69988888766555555444444432     223   233445555667789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhc--cccchHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTI--DLSDAKSMQSLYM  237 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~~~f~~  237 (254)
                      |.|+||+|+++|+|++.++.. ++.++...+...++..+.++   .|+.+..+...++.+|+..+  |.+|++.|++||.
T Consensus       196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~  271 (290)
T PRK12870        196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL  271 (290)
T ss_pred             HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            999999999999998877665 44444444555666555554   45567777788999999888  7778888888876


Q ss_pred             H
Q 025348          238 F  238 (254)
Q Consensus       238 ~  238 (254)
                      .
T Consensus       272 ~  272 (290)
T PRK12870        272 Q  272 (290)
T ss_pred             H
Confidence            4

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.3e-35  Score=258.09  Aligned_cols=228  Identities=16%  Similarity=0.187  Sum_probs=170.4

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+++++++|++||++|+|+|++|+|  +||+|+|++|++||+.+..++  .+.++.++..+|+.+..++ .++.+...
T Consensus        56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~--~~~~~~~~~~ln~~~~~l~-~~~~~~~~  132 (300)
T PRK13106         56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAG--LILFFASAYLVNRWALLLS-PIVALIAM  132 (300)
T ss_pred             HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            678999999999999999999999965  799999999999999987666  5566666677787776665 34555667


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPL-----EFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                      .||.      +||++..+++..++..+..+..|+..     ..|...     ..+.+.++++....+|+.++|++|++||
T Consensus       133 ~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D  201 (300)
T PRK13106        133 SYPY------MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPD  201 (300)
T ss_pred             HHhH------HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            8883      79999998876555554433445432     222110     1112333445566789999999999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQS  234 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~  234 (254)
                      +|+|+|.|+||+|+++| |+++++...++..+..+....++..++++   .|+.+..+...++.+|++.++.+ +++.+.
T Consensus       202 ~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~  276 (300)
T PRK13106        202 AEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRA  276 (300)
T ss_pred             hhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHH
Confidence            99999999999999999 77888888888777777777776666665   56677778889999999999887 555556


Q ss_pred             HHHH------HHHHHHHHHH
Q 025348          235 LYMF------IFKLYYAEFF  248 (254)
Q Consensus       235 f~~~------~~~~~~~~~~  248 (254)
                      |.++      ++.++.++++
T Consensus       277 F~~n~~ig~~~~~~~~~~~~  296 (300)
T PRK13106        277 FYYNIYSSIVLGLGIIIDVL  296 (300)
T ss_pred             HHHccHHHHHHHHHHHHHHH
Confidence            6555      4555555554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-35  Score=254.61  Aligned_cols=217  Identities=23%  Similarity=0.259  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||++|+|+|++|+|  +||+|||++|++||+.+...+  .++++.+++.+|+.+..+. +...+...
T Consensus        54 l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~--~~~~~~~~~~~n~~~~~l~-~~~~~~~~  130 (291)
T PRK12874         54 LAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLN--ALIFIGVSYFINPLAFKLS-FPFLIVLG  130 (291)
T ss_pred             HHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            578899999999999999999999985  799999999999999998888  6677777777787776665 45666678


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      +||++..+++.+++.++..+.+|+..     +.|.   .+.+.+++.+...+|+.+++++|++||+|+|+
T Consensus       131 ~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~a-----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~  196 (291)
T PRK12874        131 GYSY------FKRFSSLAHLVLGLSLGLAPIAGVVA-----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDK  196 (291)
T ss_pred             HHhh------hcccccccHHHHHHHHHHHHHHHHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            8984      79999999888777777665566543     2232   33444555666789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      +.|+||+|+++|+|++++.......++.+.....+.....++   .++++..+.+..+.+|++..+.+|++.|+.||..
T Consensus       197 ~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s  272 (291)
T PRK12874        197 KRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL  272 (291)
T ss_pred             HcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            999999999999999887766655554544444443333333   4456777778888999988877777788887654

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.7e-35  Score=253.52  Aligned_cols=223  Identities=15%  Similarity=0.117  Sum_probs=172.3

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML----RSPPLFIGLITWW   75 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~----~~~~~~~~~~~~~   75 (254)
                      +++.++++++|++||+.|+|+|++|+|  +||+|+|++|++||+.+..++  .++++.+++.+    |+.++.++ .+++
T Consensus        51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~--~~~~~~~~~~l~~~~n~l~~~l~-~~~~  127 (294)
T PRK12873         51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL--LLLSLFVVLSLPQPSRNLCLSLA-FLAL  127 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHH-HHHH
Confidence            678899999999999999999999986  799999999999999999988  77777766554    44555554 3556


Q ss_pred             HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348           76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDV  155 (254)
Q Consensus        76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  155 (254)
                      +....||.      +||++..+++..++.++..+.+||.+     +.|. .+...+.++++....+|+..+|++|++||+
T Consensus       128 ~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~  195 (294)
T PRK12873        128 PPILIYPS------AKRWFAYPQAILALCWGFAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADR  195 (294)
T ss_pred             HHHHHHHH------HHhccccchHHHHHHHHhHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            66788983      79999999888777776555556532     3332 111123344446678999999999999999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc--hHHHH
Q 025348          156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD--AKSMQ  233 (254)
Q Consensus       156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~--~~~~~  233 (254)
                      |+|+|+|+||+|+++|++ ++.....++.++...+...|...+.++   .|+++..+.+.++.+|++.+|.+|  +++|.
T Consensus       196 edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~  271 (294)
T PRK12873        196 RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIG  271 (294)
T ss_pred             hhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            999999999999999985 555566777777777777887777766   567788888899999999999987  47775


Q ss_pred             HHH-HHHHHHH
Q 025348          234 SLY-MFIFKLY  243 (254)
Q Consensus       234 ~f~-~~~~~~~  243 (254)
                      ++| .+.|.++
T Consensus       272 ~~F~~n~~~G~  282 (294)
T PRK12873        272 NHFSNQVILGS  282 (294)
T ss_pred             HHHHhccHHHH
Confidence            555 4455444

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.1e-34  Score=250.75  Aligned_cols=221  Identities=19%  Similarity=0.218  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+++++++|++|||+|+|+|++|+|  +||+|+|++|++||..+...+  .+.++.++...|+.+..+. +.+.+...
T Consensus        49 l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~--~~~~~~l~~~~~~~~~~l~-~~~~~~~~  125 (291)
T PRK12886         49 MAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLS--SLLMLFAAWFLNPLCLYLS-PPALFFLL  125 (291)
T ss_pred             HHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            678899999999999999999999986  799999999999999886655  5555556666787766654 34666678


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      +||++..+++.+++.++.....++..     ..|   +.+.+.+++.+...+|+.+++++++++|+|+|+
T Consensus       126 ~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~  191 (291)
T PRK12886        126 LYSY------CKRFTALAHVVLGFCLALAPLGAWIA-----IRG---TIELPAILLGLAVLFWVAGFDILYALQDLEFDR  191 (291)
T ss_pred             HHhh------hhccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHH
Confidence            8984      69999988887777666554445432     223   234455556666789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-hHHHHHHH-H
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD-AKSMQSLY-M  237 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~f~-~  237 (254)
                      |+|+||+|+++|+|++++.........+......+...+.++   .|.++..+....+.+|.+..+.+| ++.|+++| .
T Consensus       192 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  268 (291)
T PRK12886        192 KEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNM  268 (291)
T ss_pred             HcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            999999999999999988776666666655555554444444   455555566666678888888877 45787754 4


Q ss_pred             HHHHH
Q 025348          238 FIFKL  242 (254)
Q Consensus       238 ~~~~~  242 (254)
                      +.|.+
T Consensus       269 ~~~~~  273 (291)
T PRK12886        269 NGYIS  273 (291)
T ss_pred             hHHHH
Confidence            44443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-34  Score=251.52  Aligned_cols=216  Identities=17%  Similarity=0.196  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+++++++|++||++|+|+|++|+|  +||+|||++|++||..+...+  .++++.+++.+|+.+..+. +.+.+..+
T Consensus        49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-~~~~~~~~  125 (282)
T PRK12848         49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVL--VLVAFLLVLTLNTLTIWLS-VAALALAW  125 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            577899999999999999999998765  799999999999999999998  7778777777887666554 45666788


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      .||++..+++..++.++..+.+++..     ..+   +.+...+++.+...+|+...++.|++||+|+|+
T Consensus       126 ~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  191 (282)
T PRK12848        126 IYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL  191 (282)
T ss_pred             HHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence            9973      68888887776666555444445433     222   234455556667789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      ++|+||+|+++|+|++.+.. .++.+........++..+.++   .|.++..+....+.+|++..|.+|+++|+++|..
T Consensus       192 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~  266 (282)
T PRK12848        192 KIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLN  266 (282)
T ss_pred             HcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999887765 344444444444444444443   4566777788899999999999888877666643

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=3.2e-34  Score=249.96  Aligned_cols=216  Identities=18%  Similarity=0.250  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.+++++++|++|||+|+|+|++|+|  +||+|+|++|++|+..+..++  .++++.+++.+|+.+..+. +++.++.+
T Consensus        47 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~l~-~~~~~~~~  123 (281)
T TIGR01474        47 VGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQ--LLVALGVLLQLNPLTILLG-VASLALVA  123 (281)
T ss_pred             HHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHH-HHHHHHHH
Confidence            567899999999999999999998765  799999999999999999888  8888888887887766554 56777789


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      +||++..+++..++.++....+|++.     ..|   +.+.+.+.+.....+|+.+.+++|++||+|+|+
T Consensus       124 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~  189 (281)
T TIGR01474       124 TYPF------MKRITYWPQLVLGLAFGWGALMGWAA-----VTG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDI  189 (281)
T ss_pred             Hhch------hcccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            9983      79999888877666665444455432     223   234444445566788999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      |+|+||+|+++|+|++++.. .++.++.....+.+...+.++   .|.++..+....+.+++.+.|.+|+++|+++|..
T Consensus       190 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~  264 (281)
T TIGR01474       190 KIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA  264 (281)
T ss_pred             HcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999998865543 344443333334444434444   4556677778888999988888888888877764

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-33  Score=247.55  Aligned_cols=221  Identities=23%  Similarity=0.368  Sum_probs=176.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++++++|++||+.|+|+||+|+|  +||+|||++|+++|+.+..++  .++++.+++.+|+.++.+. +.+.++.+
T Consensus        54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~--~~~~~~~a~~l~~~~~~l~-~~~~~l~~  130 (289)
T COG0382          54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILL--LLLGLALALLLNPLAFLLS-LAALVLAL  130 (289)
T ss_pred             HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            577899999999999999999999999  899999999999999999999  8999999999998776554 56888889


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .|+      ++||.+..++.+.+..++.....|+..     ..|   +.+.+.+++.+...+|+.+++++|+++|+|+|+
T Consensus       131 ~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~  196 (289)
T COG0382         131 AYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDR  196 (289)
T ss_pred             HHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchH
Confidence            995      589999999987776666544444432     222   124456667777889999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFI  239 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~  239 (254)
                      +.|+||+|+.+|+|++..+..... .....+...+...+...  ..+..++......+.+|+...|.+|++.|+++|..-
T Consensus       197 ~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (289)
T COG0382         197 KAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVN  273 (289)
T ss_pred             hcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHh
Confidence            999999999999999988887666 33333344444333221  256778888889999999999998999999988763


Q ss_pred             HHH
Q 025348          240 FKL  242 (254)
Q Consensus       240 ~~~  242 (254)
                      ...
T Consensus       274 ~~~  276 (289)
T COG0382         274 LLL  276 (289)
T ss_pred             hHH
Confidence            333

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=248.73  Aligned_cols=217  Identities=18%  Similarity=0.144  Sum_probs=162.9

Q ss_pred             ChHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVG   78 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~   78 (254)
                      +++++++++++|++|||+|+|+|++++|  +||+|+|++|++|+..+..++  .++|+.+.+..|+.++.+. +.+.+..
T Consensus        78 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~g~~l~~~~~~~~~~l~-~~~~~~~  154 (314)
T PRK12878         78 FVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQ--ALVGLAVLLQFNWFAIALG-IASLAIV  154 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            3688999999999999999999998875  799999999999999988888  7888877777786666554 5677778


Q ss_pred             hHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 025348           79 AAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGD  158 (254)
Q Consensus        79 ~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D  158 (254)
                      +.||.      +||++..++...+..++....+|++.     ..|   +.+.+.+.++....+|+...++++++||+|+|
T Consensus       155 ~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D  220 (314)
T PRK12878        155 AAYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFG---SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDD  220 (314)
T ss_pred             HHHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhC---CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence            89983      79988877765555554444445443     223   23444455556678899999999999999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      +|+|+||+|+++|++++++.... +.+......+.+...+.++   .+.++.......+.+|..+.|.+|++.|+++|..
T Consensus       221 ~~aGi~slpv~~G~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        221 ALIGVKSTARLFGDHTKTWLVLF-YGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             HHcCCcccchHhchhhHHHHHHH-HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence            99999999999999999887743 3333333333443334444   3445555566678899999888888888888864

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=246.45  Aligned_cols=216  Identities=15%  Similarity=0.188  Sum_probs=161.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++++++|+++|++|||+|+|+|++|+|  +||+|+|++|++|+..+...+  .++++.+++.+|+..+.+. +++.+..+
T Consensus        52 l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~~~~~~~~~~-~~~~~~~~  128 (285)
T PRK12847         52 IGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFIL--LLIALVILLLLNKTTIYLS-FIAVILIV  128 (285)
T ss_pred             HHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            577899999999999999999998775  799999999999999999988  8888877777887666554 56777788


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||.      .||++..+++..++.++..+.+++..     ..|   +.+.+.++..+...+|+.+.++++++||+|+|+
T Consensus       129 ~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  194 (285)
T PRK12847        129 LYPL------MKRFFYWPQLFLGFTFNMGILMAFAA-----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDL  194 (285)
T ss_pred             hccc------cccCCcccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence            9984      68888877766555555433344332     223   234555566677789999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (254)
                      |+|+||+|+++|+|++.++........+.. ...+...+...   +++....+....+.+|+...|.+|+++|+++|..
T Consensus       195 ~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~---~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~  269 (285)
T PRK12847        195 KIGVKSTAIYFGNKTRKYILRLYIISLILW-LILGIISSLHN---IFYLAILAAAGIFYYQYKLLDFDNPANCMYAFKA  269 (285)
T ss_pred             HcCCchhHHHhccccHHHHHHHHHHHHHHH-HHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999988776655444443 33333333322   2334555556788899988888888777766543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-33  Score=242.24  Aligned_cols=225  Identities=20%  Similarity=0.336  Sum_probs=164.8

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      ++.+++++++|++||++|+|+|++|+|+||+++|++|+++++.+..++  .++++.++..+|+....+. +++.+.++.|
T Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Y  120 (279)
T PRK12884         44 LTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILL--FILGLIAAYLISPLAFLVV-ILVSVLGILY  120 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999888  7778877777786655554 4677778999


Q ss_pred             cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      |.     ++||++..++...+..++.+...++..      .+.   .+.+.+.......+|+...++++|++|+|+|++.
T Consensus       121 s~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~  186 (279)
T PRK12884        121 NW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA------VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLR  186 (279)
T ss_pred             HH-----hhccccchhHHHHHHHHHHHHHHHHHH------hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHc
Confidence            94     589999877766666665443333321      121   1123444455667889999999999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHHH
Q 025348          162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQT-RTIDLSDAKSMQSLYMFIF  240 (254)
Q Consensus       162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~~~  240 (254)
                      |+||+|+++|+|+++++........++...........++   .|.+...+....+.++. +..+.+|+++++++..+.+
T Consensus       187 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  263 (279)
T PRK12884        187 GARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITL  263 (279)
T ss_pred             CCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            9999999999999998887766666654433332222333   34445555666666665 4556667777887765555


Q ss_pred             HHHHHH
Q 025348          241 KLYYAE  246 (254)
Q Consensus       241 ~~~~~~  246 (254)
                      .++...
T Consensus       264 ~~~~~~  269 (279)
T PRK12884        264 TAMLLA  269 (279)
T ss_pred             HHHHHH
Confidence            554443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=5e-33  Score=246.29  Aligned_cols=202  Identities=23%  Similarity=0.336  Sum_probs=142.0

Q ss_pred             HHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcc-------hhHHHHHHHHHHHHHh
Q 025348            7 MNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLR-------SPPLFIGLITWWIVGA   79 (254)
Q Consensus         7 ~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~-------~~~~~~~~~~~~~~~~   79 (254)
                      ..+++|++|||+|+|+|++|+|+||+++|++|++|++.+...+  ..+++.++..++       .+.+....+++.++++
T Consensus        62 ~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l--~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~  139 (331)
T PRK12392         62 GTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIV--LLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAY  139 (331)
T ss_pred             HHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHH--HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhh
Confidence            3456899999999999999999999999999999999998888  555554443322       1223333346777899


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      +||.  ||+++||+++.+....++.++.....++.     +..+.   .+.+.++..+..++|+.+++++||++|+|+|+
T Consensus       140 ~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~  209 (331)
T PRK12392        140 IYSA--PPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDK  209 (331)
T ss_pred             hhcC--CchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence            9994  88899999876554433333322222221     23332   33444455566778999999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRT  223 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (254)
                      +.|+||+|+++|+|+++++......+.....+..++....++   .++....+.+.++.+|.+.
T Consensus       210 ~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l  270 (331)
T PRK12392        210 EGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQL  270 (331)
T ss_pred             HcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988876665566655555555555444   3344555556666666653

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.3e-33  Score=241.51  Aligned_cols=223  Identities=26%  Similarity=0.356  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      ++.+++++++|++||++|+|+|++|+|+||+|+|++|++|++.+..++  .++++.+++.+|+....+. .++.++.+.|
T Consensus        45 l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l--~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Y  121 (276)
T PRK12882         45 AAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILL--FAAGVALAFLLPPLCLAIA-LFNSLLLVLY  121 (276)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999  8888888888886665554 4566678899


Q ss_pred             cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      |.     |+||++..++...+...|.....|+..      .+..  ...+.+...+..++|+..++++||+||+|+|+++
T Consensus       122 t~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~  188 (276)
T PRK12882        122 AE-----TLKGTPGLGNASVAYLTGSTFLFGGAA------VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAE  188 (276)
T ss_pred             HH-----HHhcccchhHHHHHHHHHHHHHHHHHH------hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHc
Confidence            84     689999877655443333222233221      2211  1122333445556788999999999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH-HHHHHHhhhhccccchHHHHHHHHH-H
Q 025348          162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVL-GFILWHQTRTIDLSDAKSMQSLYMF-I  239 (254)
Q Consensus       162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f~~~-~  239 (254)
                      |+||+|+++|+|+++++...............-.....++   .|.....+. ...+.++.+..|.+|++.|+++|.. .
T Consensus       189 G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~  265 (276)
T PRK12882        189 GARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGM  265 (276)
T ss_pred             CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999988776655444433221111222233   334343333 3444556667777788888776543 5


Q ss_pred             HHHH
Q 025348          240 FKLY  243 (254)
Q Consensus       240 ~~~~  243 (254)
                      |-+.
T Consensus       266 ~~g~  269 (276)
T PRK12882        266 FLAL  269 (276)
T ss_pred             HHHH
Confidence            5443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=240.10  Aligned_cols=216  Identities=21%  Similarity=0.269  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      ++++++++++|++||++|+|+|++|+|+||+|||++|++|++.+...+  .++++.++..+|+.+..+. +.+.++.+.|
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y  120 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITL--FIVGLILSIFINIYAFLIA-LLNSILLYLY  120 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999998  8888877777887666554 4566678899


Q ss_pred             cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      |.     ++||++..++...+...|.....|+..     ..+     ..+.+.+.....+|+.+.+++||+||+|+|++.
T Consensus       121 s~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~  185 (279)
T PRK09573        121 AK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-----VFN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKE  185 (279)
T ss_pred             HH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-----Hcc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHC
Confidence            84     589999887655444444333444432     111     122333445556888899999999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHH
Q 025348          162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQT-RTIDLSDAKSMQSLYMF  238 (254)
Q Consensus       162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~  238 (254)
                      |+||+|+++|+|++.++......+..............++   .|..+..+....+.++. +..+.+||++|++-.+.
T Consensus       186 G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  260 (279)
T PRK09573        186 NVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKASKY  260 (279)
T ss_pred             CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            9999999999999988876555444443322111111233   44555555555566653 33445567777665444

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2.4e-32  Score=241.50  Aligned_cols=177  Identities=22%  Similarity=0.300  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      ++..++++++|.+|||+|+|+|++|+|+||+++|++|++|++.+..++  .++++.+++.+|+....+. +.+.++++.|
T Consensus        72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Y  148 (314)
T PRK07566         72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVL--TVLGLAVAYLLGPWVFLAA-LLGLFLAWIY  148 (314)
T ss_pred             HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHH--HHHHHHHHHHHChHHHHHH-HHHHHHHHHh
Confidence            355668999999999999999999999999999999999999999888  7778877777886655443 4677778999


Q ss_pred             cCCCccccccccchhHHHHHHH-HHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHH
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMI-LNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKE  160 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~  160 (254)
                      |.  ||+++||++..+++..+. +++.....++..     ..+.  ..+...++..+..++++.+++++||++|+|+|++
T Consensus       149 t~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~-----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~  219 (314)
T PRK07566        149 SA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA-----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQ  219 (314)
T ss_pred             cC--CccccccccchhhHHHHHHHHHHHHHHHHHH-----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence            94  788999999766554443 333222222221     1111  1234444455566778889999999999999999


Q ss_pred             cCCcccceeechHHHHHHHHHHHHHHHHHH
Q 025348          161 FGLRTLPVILGKEKVFSISVSMLLMAYGAA  190 (254)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~  190 (254)
                      +|+||+|+++|+|+++++...+..++++..
T Consensus       220 aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        220 LGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             cCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877776666654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=3.1e-32  Score=237.94  Aligned_cols=178  Identities=21%  Similarity=0.307  Sum_probs=136.5

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      +++.++++++|.+|||+|+|+|++|+|+||+++|++|++|++.....+  ..+++.++..++.+......+++.+.++.|
T Consensus        45 ~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Y  122 (283)
T TIGR01476        45 MAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVL--TVAGLLVALVLGNWLIVLFTVVGIVLAVIY  122 (283)
T ss_pred             HHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence            467789999999999999999999999999999999999999998888  777777777666555333345677789999


Q ss_pred             cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      |  .||+++||+++.+++..+...+.......+     ...+   ..+...++..+..++++.+++++||+||+|+|++.
T Consensus       123 s--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~  192 (283)
T TIGR01476       123 S--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGH-----AIFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQL  192 (283)
T ss_pred             c--CchhhhccCCCccHHHHHHHHHHHHHHHHH-----HHhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHc
Confidence            9  589999999976665544433221111111     1112   13344444455667889999999999999999999


Q ss_pred             CCcccceeechHHHHHHHHHHHHHHHHHHH
Q 025348          162 GLRTLPVILGKEKVFSISVSMLLMAYGAAI  191 (254)
Q Consensus       162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~  191 (254)
                      |+||+|+++|+|++++++..+..+++...+
T Consensus       193 G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  222 (283)
T TIGR01476       193 GLRSLPVMIGVKRAAIVAVTTINVFQAMVI  222 (283)
T ss_pred             CCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877777665543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.6e-31  Score=232.69  Aligned_cols=224  Identities=14%  Similarity=0.113  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-LRSPPLFIGLITWWIVG   78 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-~~~~~~~~~~~~~~~~~   78 (254)
                      ++..++++++|++|||+|+|+|++|+  |+||+|+|++|++||..++..+  ..+++.++.. +|+.+.....+...+..
T Consensus        43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~  120 (279)
T PRK12869         43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL--SALGTALGFLLLGPLTALFIALGWFFYA  120 (279)
T ss_pred             HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999998  5899999999999999999888  7778777766 67654333233444567


Q ss_pred             hHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 025348           79 AAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGD  158 (254)
Q Consensus        79 ~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D  158 (254)
                      +.||.     ++||++.++...+.+.++..+..|+..     ..|   +.+.+.++..+...+|+.+.....+++|+|||
T Consensus       121 ~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd  187 (279)
T PRK12869        121 VVYTI-----WLKPRTWLNIVIGGFAGNAAALAGYAS-----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDY  187 (279)
T ss_pred             hhhCc-----ccccCChHHHHHHHHHHHHHHHHHHHH-----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            78984     589999988887777776655445433     122   23445555556677899888887888999999


Q ss_pred             HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH-HHHHHHHhhhhccccchHHHHH-HH
Q 025348          159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSV-LGFILWHQTRTIDLSDAKSMQS-LY  236 (254)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~d~~~~~~~~~-f~  236 (254)
                      +++|+||+|+++|+|++++.......+........+. ...++   .|.....+ .+..+.+|.+..+.+|+++|++ |.
T Consensus       188 ~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  263 (279)
T PRK12869        188 RRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFK  263 (279)
T ss_pred             HHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Confidence            9999999999999999988776555444443333332 23333   34444433 3445566666666555666655 55


Q ss_pred             HHHHHHHH
Q 025348          237 MFIFKLYY  244 (254)
Q Consensus       237 ~~~~~~~~  244 (254)
                      .++|.+..
T Consensus       264 ~s~~~l~~  271 (279)
T PRK12869        264 ASSPYLAL  271 (279)
T ss_pred             HHHHHHHH
Confidence            55666544

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.1e-31  Score=235.69  Aligned_cols=217  Identities=13%  Similarity=0.116  Sum_probs=153.3

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHH-H
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-LRSPPLFIGLITWWI-V   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-~~~~~~~~~~~~~~~-~   77 (254)
                      ++++++++++|++|||+|+|+|++|+  |+||+|+|++|++||..+...+  .++|+.+++. .|+.+..+. .++.+ .
T Consensus        51 l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l--~~~g~~l~~~l~~~~~~~l~-~~~~~~~  127 (296)
T PRK04375         51 LGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVL--GVLGFLLLGLFVNPLAAWLT-LAGIFFY  127 (296)
T ss_pred             HHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            67889999999999999999999988  5899999999999999999888  7777766543 465555443 23333 4


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      ...||.     ++||++.++...++..++..+.+|++.     ..|   +.+...+++.+...+|+...++.++++|+||
T Consensus       128 ~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D  194 (296)
T PRK04375        128 VVVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWAA-----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDD  194 (296)
T ss_pred             HHHhcc-----chhcCCccchHHHHHHHHhHHHHHHHH-----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            568984     589999877766666665444455543     223   2345555666777899999999999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH-HHHHHHHHHHHhhhhccccchHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMI-GHSVLGFILWHQTRTIDLSDAKSMQSLY  236 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~d~~~~~~~~~f~  236 (254)
                      |+++|+||+|+++|+|++++.......+..............++   .|.+ +.......+.++++..+.+|++.|++.|
T Consensus       195 ~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F  271 (296)
T PRK04375        195 YAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLF  271 (296)
T ss_pred             HHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHH
Confidence            99999999999999999887665443333322222211111233   3333 3444566777888888777777665555


Q ss_pred             H
Q 025348          237 M  237 (254)
Q Consensus       237 ~  237 (254)
                      .
T Consensus       272 ~  272 (296)
T PRK04375        272 R  272 (296)
T ss_pred             H
Confidence            4

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-30  Score=227.64  Aligned_cols=226  Identities=16%  Similarity=0.183  Sum_probs=158.2

Q ss_pred             ChHHHHHHHHHHHhhcccchhhhhccC-----CCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVEIDKVNK-----PHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLIT   73 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~-----~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~   73 (254)
                      +++++++|+++|.+|||+|+|.|+.|+     |+||+++|++|++|++....++  ++..+++.+....+...+.+ .++
T Consensus        46 ~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l-~~~  124 (296)
T PRK05951         46 LLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTL-ALL  124 (296)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHH
Confidence            368899999999999999977655554     6799999999999999988876  23333444444445433333 467


Q ss_pred             HHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 025348           74 WWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLP  153 (254)
Q Consensus        74 ~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (254)
                      +.+.++.||.  ||+++|+++++|..++..++..++ +|.+.. +++      ..+.+.+...+..++++.....+||+|
T Consensus       125 ~~~~~~~Yt~--~P~~lky~glGe~~v~~~~g~~~v-lg~~~~-~~~------~~~~~~~~~sl~~~l~~~~il~~n~~~  194 (296)
T PRK05951        125 GVFLWTCYMG--PPFFLKYRWLGEHLVFYAWSHMLV-MGLIYV-WLG------NLSSPNLLAGVPLGLLMALVLLSNNLR  194 (296)
T ss_pred             HHHHHHHHcC--CCcccCCCCchHHHHHHHHHHHHH-HHHHHH-HhC------cccHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            8888999994  888899999999877766654433 443331 222      233445555566778888999999999


Q ss_pred             ChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Q 025348          154 DVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQ  233 (254)
Q Consensus       154 D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~  233 (254)
                      |+|+|++.|+||+|+++|+|++ +........+|+..+........++....+.+++......+.++.++.|.++++.|.
T Consensus       195 D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~  273 (296)
T PRK05951        195 DIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATV  273 (296)
T ss_pred             cchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHH
Confidence            9999999999999999999999 666566666666554433322222222244555555556667777777776666777


Q ss_pred             HHHHH
Q 025348          234 SLYMF  238 (254)
Q Consensus       234 ~f~~~  238 (254)
                      +.+..
T Consensus       274 ~~~~~  278 (296)
T PRK05951        274 QLFML  278 (296)
T ss_pred             HHHHH
Confidence            76665

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=5.8e-31  Score=227.32  Aligned_cols=222  Identities=15%  Similarity=0.152  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ..++..|.+.|.+|||+|+|+|++|+|+||+++|++|++|++.+...+  ++..+++.+++..|+..+.+. +++.++.+
T Consensus        54 ~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~  132 (292)
T PRK13595         54 YLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFV  132 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            345677889999999999999999999999999999999999875544  223445667777776665554 56778899


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||  .||+|+|++|+.++++.... +.    |+..  .....|..   .....  .....+|..++++++++||+|+||
T Consensus       133 ~YS--~pPlRlK~rp~l~~l~~~~~-g~----p~~~--~~~~~g~~---~~~~~--l~a~~~w~~g~dii~ai~DiegDr  198 (292)
T PRK13595        133 GYS--LPPLRFKARPFLDGLSNAAY-AL----PLAL--PALALGAP---VPWPP--LLALMAWSVGKHAFDAAQDIPADR  198 (292)
T ss_pred             HHc--cCccchhcCcchhHHHHHHH-HH----HHHH--HHHHcCCc---chHHH--HHHHHHHHHHHHHHHhccChHhHH
Confidence            999  59999999999998876432 22    2221  11233321   11221  234567889999999999999999


Q ss_pred             HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFI  239 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~  239 (254)
                      +.|+||+|+++|+|++.+++..+..++...+....   ...+.  .    ..+....+..|.+ .|.+.++..+.|..++
T Consensus       199 ~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~---~~~~~--~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  268 (292)
T PRK13595        199 AAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS---RLTAL--A----LWLICGGMALALW-RRPTPETAHRLYPLSI  268 (292)
T ss_pred             HcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc---chHHH--H----HHHHHHHHHHHHh-cCCCHHHHhccchHHH
Confidence            99999999999999999998887766655543322   12221  1    1122222222333 5776777888888888


Q ss_pred             HHHHHHHHH
Q 025348          240 FKLYYAEFF  248 (254)
Q Consensus       240 ~~~~~~~~~  248 (254)
                      |..+..+++
T Consensus       269 ~~~~~~g~~  277 (292)
T PRK13595        269 VTPWIVGTV  277 (292)
T ss_pred             HHhHHHHHH
Confidence            887776654

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.98  E-value=1.8e-30  Score=232.96  Aligned_cols=219  Identities=21%  Similarity=0.272  Sum_probs=144.1

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-------cchhHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-------LRSPPLFIGLITW   74 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-------~~~~~~~~~~~~~   74 (254)
                      ++..++++++|++|||+|+|+|++|+|+||+++|++++++++.....+  ..+++.+++.       .++..+.+ .+++
T Consensus       130 l~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l--~~~~l~l~~~L~~~~~~~~~~~~~l-~l~g  206 (375)
T PLN00012        130 MSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL--LLGGLGLAYTLDVWAGHDFPIVFYL-ALGG  206 (375)
T ss_pred             HHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHhccccHHHHHH-HHHH
Confidence            467788999999999999999999999999999999999999876665  3333333322       23333333 3467


Q ss_pred             HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                      .++.++||.  ||+++||+++.+++..+...+   .+|++.. + ...|   ..+...++..+..++|..++++.||++|
T Consensus       207 i~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~---~lp~~~g-~-a~~g---~~s~~~illal~~~l~~lai~ivnd~~D  276 (375)
T PLN00012        207 SLLSYIYSA--PPLKLKQNGWIGNYALGASYI---SLPWWAG-Q-ALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKS  276 (375)
T ss_pred             HHHhhhhcC--CchhhhHhccHhHHHHHHHHH---HHHHHHH-H-HHcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            778999994  888999999987754333332   2333321 1 2233   2344555555667789999999999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-HHHHHHHHHHHHhhhhccccchHHHH
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTM-IGHSVLGFILWHQTRTIDLSDAKSMQ  233 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~~~~~~  233 (254)
                      +|+|++.|+||+|+++|+|++++++...+.+.....  .++......  .++. +...+....+.++.+ ...+|++++.
T Consensus       277 ie~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~--~~~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~  351 (375)
T PLN00012        277 IEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV--AGYLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDPVKND  351 (375)
T ss_pred             hhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH--HHHHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCHHHHH
Confidence            999999999999999999999998765444443322  222221111  1221 112222233333333 3334777777


Q ss_pred             HHHHH
Q 025348          234 SLYMF  238 (254)
Q Consensus       234 ~f~~~  238 (254)
                      ..|..
T Consensus       352 ~~~~~  356 (375)
T PLN00012        352 VKYQA  356 (375)
T ss_pred             HHHHH
Confidence            77765

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.98  E-value=8.2e-31  Score=228.61  Aligned_cols=222  Identities=16%  Similarity=0.162  Sum_probs=156.7

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHH-
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVA-MGIMLRSPPLFIGLITWWIV-   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~-l~~~~~~~~~~~~~~~~~~~-   77 (254)
                      ++++++++++|++|||+|+|+|++|+  |+||+|+|++|++|+..++..+  .++|+. +....|+....+. +.+.++ 
T Consensus        42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~--~~~g~~il~~~~~~~~~~l~-~~~~~~~  118 (280)
T TIGR01473        42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLL--GVLGVAILAAFVNPLAALLG-LFGIFFY  118 (280)
T ss_pred             HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            67899999999999999999999987  5899999999999999999888  777776 4444676655443 345544 


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      .+.||.     .+||++.++.+.+++.++..+..|++.     ..|   +.+.+.+++.....+|+...+...+++|+|+
T Consensus       119 ~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~d  185 (280)
T TIGR01473       119 VIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWAA-----VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDD  185 (280)
T ss_pred             HhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            778984     379999988877777666554445433     223   2344555556667889888888888999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-HHHHHHHHHHHHhhhhcccc-chHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTM-IGHSVLGFILWHQTRTIDLS-DAKSMQSL  235 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~-~~~~~~~f  235 (254)
                      |+++|+||+|+++|+|++.+..............+.+.....++   .|. .+..+....+.+|++..|.+ |++.|++.
T Consensus       186 d~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  262 (280)
T TIGR01473       186 YRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKL  262 (280)
T ss_pred             HHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999998877665544333333333332223333   333 45555667777888777765 56555544


Q ss_pred             H-HHHHHH
Q 025348          236 Y-MFIFKL  242 (254)
Q Consensus       236 ~-~~~~~~  242 (254)
                      | ...+.+
T Consensus       263 f~~s~~~~  270 (280)
T TIGR01473       263 FKFSLIYL  270 (280)
T ss_pred             HHHHHHHH
Confidence            4 444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.98  E-value=2.1e-30  Score=228.33  Aligned_cols=176  Identities=24%  Similarity=0.387  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML-------RSPPLFIGLITW   74 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~-------~~~~~~~~~~~~   74 (254)
                      +++.++++++|.+|||+|+|.|+.|+|+||+++|++|+++++.....+  ..+++.++..+       +++.+.+ .+++
T Consensus        61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l--~~~~~~lg~~l~~~~~~~~~~~~~l-~~~~  137 (306)
T TIGR02056        61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLL--FIAGIAIAFILDLWAGHEFPNVFVL-ALFG  137 (306)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHhhcccchHHHHH-HHHH
Confidence            466899999999999999999999999999999999999999988877  44444443322       2233333 4567


Q ss_pred             HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                      .+.++.||.  ||+++||++..+++..+...+.   +|++.. + ...|   +.+...++..+..++|+.++++.||++|
T Consensus       138 ~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~---~~~~~~-~-a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D  207 (306)
T TIGR02056       138 SFIAFIYSA--PPLKLKQNGWLGNFALGASYIA---LPWWAG-H-ALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKS  207 (306)
T ss_pred             HHHHHHHcC--ChhhhhhcccHHHHHHHHHHHH---HHHHHH-H-HHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            788999994  8889999987665543333322   222221 1 1223   2344444555666789999999999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHH
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAA  190 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~  190 (254)
                      +|+|++.|+||+|+++|+|++++++..+...++...
T Consensus       208 ~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~  243 (306)
T TIGR02056       208 VEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI  243 (306)
T ss_pred             hHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887766656544

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=9.5e-32  Score=224.22  Aligned_cols=220  Identities=15%  Similarity=0.117  Sum_probs=172.3

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      .|+++||+++|.+||..|+|+|++++|  .||++||++|++||+.+..++  ..+|+.+..++|+.+..+. ..++.+.+
T Consensus       110 ~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~q--l~~gLgiLlqLn~ysi~lg-~~sl~~v~  186 (353)
T KOG1381|consen  110 VGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQ--LSLGLGILLQLNWYSIALG-ASSLALVI  186 (353)
T ss_pred             ccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHH--HHHhHHHHHhccHHHHHhc-ccccccEE
Confidence            478999999999999999999999988  599999999999999999999  8888888888887766553 45666777


Q ss_pred             HhcCCCccccccccchhHHHHH--HHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTI--MILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      .|+.      +||.+.++++.-  .+.||.+  +||-     +.-|. . .+...+.+++.-..|++.+|++|++||+++
T Consensus       187 ~ypl------~kr~TY~pq~vLgltfnwGAl--lGw~-----A~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~d  251 (353)
T KOG1381|consen  187 TYPL------MKRFTYWPQLVLGLTFNWGAL--LGWC-----ALKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRD  251 (353)
T ss_pred             Eeeh------hhhcchhHHHHHhhhcchhhh--hcch-----hhcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchh
Confidence            8984      799999987542  2445532  3442     22232 1 111233456666789999999999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYM  237 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~  237 (254)
                      |.++|+|+.+.++|+++..|+. .+-+.....+...|+.+...|   +|++++.+.+.++.+|..++|+||+++|.++|.
T Consensus       252 Dvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~  327 (353)
T KOG1381|consen  252 DVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFK  327 (353)
T ss_pred             hhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHH
Confidence            9999999999999999776665 344444555567888888888   677778888999999999999999999988885


Q ss_pred             H-HHHHH
Q 025348          238 F-IFKLY  243 (254)
Q Consensus       238 ~-~~~~~  243 (254)
                      . .|.++
T Consensus       328 sN~ntGl  334 (353)
T KOG1381|consen  328 SNSNTGL  334 (353)
T ss_pred             hcCcchH
Confidence            4 44443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=9.2e-29  Score=217.12  Aligned_cols=189  Identities=18%  Similarity=0.189  Sum_probs=141.1

Q ss_pred             hHHHHHHHHHHHhhcccchh--hhh--ccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVE--IDK--VNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWW   75 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~--~D~--~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~   75 (254)
                      ++++++|.++|.+|||+|+|  .|+  .++|+||+++|++|++|+......+  ++.++|+.+....+.+.+.. .+++.
T Consensus        45 l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-~~~~~  123 (293)
T PRK06080         45 LAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLL-GLLCI  123 (293)
T ss_pred             HHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Confidence            67889999999999999994  675  4567899999999999999887777  23344554444445443333 35677


Q ss_pred             HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348           76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDV  155 (254)
Q Consensus        76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  155 (254)
                      ++++.||.  ||.++|++++++..++..++...+..+++.  ++   +   ..+.+.++..+..++|+...++.||++|+
T Consensus       124 ~~~~~Ys~--~p~~~~~~glge~~~~~~~G~~~~~~~~~~--~~---~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~  193 (293)
T PRK06080        124 AAAILYTG--GPKPYGYTGLGELFVGVFFGLVIVLGTYYL--QA---G---TVDSAVFLPALPCGLLIGAVLLANNIRDI  193 (293)
T ss_pred             HHhhhhcC--CCCccCCCCcHHHHHHHHHHHHHHHHHHHH--hc---C---CCCHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            78899994  788899999888766655444333333332  21   2   23455666667788999999999999999


Q ss_pred             hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348          156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL  201 (254)
Q Consensus       156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  201 (254)
                      |+|++.|+||+|+++|+|+++++...+..++++..+........++
T Consensus       194 ~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  239 (293)
T PRK06080        194 ETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP  239 (293)
T ss_pred             hhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            9999999999999999999999999999888887765544433343

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=7.1e-29  Score=216.14  Aligned_cols=163  Identities=25%  Similarity=0.393  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      ++.++.++++|++||++|+|+|++|+|+||+|+|++|+++++.+..++  .++|+.+++.+|+.++.+. +.+...++.|
T Consensus        44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l--~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y  120 (277)
T PRK12883         44 LVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLL--FAVGLALAYLINIEAFLFA-LGAYVLMFLY  120 (277)
T ss_pred             HHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            467788999999999999999999999999999999999999998888  7788888877887666554 4566778999


Q ss_pred             cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348           82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus        82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      |.     ++||.+..++...+...|.....|+..     . +   ..+...+. ....++++...++.||++|+|+|++.
T Consensus       121 ~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~---~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~  185 (277)
T PRK12883        121 AW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V-G---RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAK  185 (277)
T ss_pred             hh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h-c---cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHc
Confidence            95     579888766554333333222233321     1 2   12222222 22345667788999999999999999


Q ss_pred             CCcccceeechHHHHHHHHHH
Q 025348          162 GLRTLPVILGKEKVFSISVSM  182 (254)
Q Consensus       162 G~~Tl~v~~G~~~~~~~~~~~  182 (254)
                      |+||+|+++|+|+++++....
T Consensus       186 G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        186 GAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             CCcCcChHhcHHHHHHHHHHH
Confidence            999999999999998876544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=8.2e-28  Score=212.46  Aligned_cols=188  Identities=13%  Similarity=0.104  Sum_probs=140.2

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccC----CCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNK----PHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWW   75 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~----~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~   75 (254)
                      ++++++|.++|.+|||+|++.|+.++    |+|++++|.+++|+++.....+  ++.++|+.+.+..|.. ....++++.
T Consensus        46 l~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~-~l~igl~g~  124 (317)
T PRK13387         46 VAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWL-LLVIGLICF  124 (317)
T ss_pred             HHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHH
Confidence            57788999999999999998766554    5799999999999999988777  4556666677777744 444456788


Q ss_pred             HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCc----------cchH----HHHHHHHHHHH
Q 025348           76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPL----------EFTK----PLLFAAAFMGI  141 (254)
Q Consensus        76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~----~~~~~~~~~~~  141 (254)
                      +.++.||.  ||+++||++++|..++.+++..++..++|.  |+...+...          ..+.    +.++..+..++
T Consensus       125 ~~~~~Yt~--gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~  200 (317)
T PRK13387        125 AIGILYTG--GPLPLSRMPLGEIFSGLTMGFGIFLLAVYI--NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIF  200 (317)
T ss_pred             HHhhhhcC--CCcccccCccHHHHHHHHHHHHHHHHHHHH--hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHH
Confidence            89999995  788999999988877666665444344443  332111000          0000    11123455667


Q ss_pred             HHHHHHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348          142 FNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG  194 (254)
Q Consensus       142 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g  194 (254)
                      .+...++.||++|+|+|++.|+||+|+++|+|++++++..+...+|+..+...
T Consensus       201 l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v  253 (317)
T PRK13387        201 TIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIV  253 (317)
T ss_pred             HHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999999999888888765443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=4.8e-28  Score=211.99  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHhhcccchhhhhcc---------C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchh---HHH
Q 025348            3 PAILMNIFVTAINQLSDVEIDKVN---------K--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSP---PLF   68 (254)
Q Consensus         3 ~~~l~~~a~~~~Nd~~D~~~D~~n---------~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~---~~~   68 (254)
                      ++.++..++|++|||.|+|.|++|         |  ++||+++|++|++|+..+.+++  .++++.++..++..   ...
T Consensus        49 ~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l--~~i~~~l~~~l~~~~~~~~~  126 (297)
T PRK12871         49 IGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILL--AAVTSALILTLPYPNSLYVF  126 (297)
T ss_pred             HHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            445556778999999999999865         3  3799999999999999999888  66666655544321   122


Q ss_pred             HHHHHHHHHHhHhcCCCcccccccc---chhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Q 025348           69 IGLITWWIVGAAYSIDLPLLRWKGS---PLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIA  145 (254)
Q Consensus        69 ~~~~~~~~~~~~Ys~~~pp~~lKr~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  145 (254)
                      ...+.+.++++.|+.      .||.   |.. .+.+...++.+...+ +.     ..|   ..+...+....+..+|+.+
T Consensus       127 ~l~~~~~~~~~~Y~~------~kr~~~~p~~-~l~G~~~~~~~~~~g-~~-----~~g---~~~~~~~ll~~~~~~w~~~  190 (297)
T PRK12871        127 VIMLYSYGIEAFYQV------KKRNQKYPVA-QLLGRTDFTLFPAAG-YL-----CYG---QPDMTALLYMVFFYPWTMA  190 (297)
T ss_pred             HHHHHHHHHHHHHhc------ccccccccHH-HHHHHHHHHHHHHHH-HH-----HhC---CCcHHHHHHHHHHHHHHHH
Confidence            223456667788884      2332   321 122222222222222 22     123   2334445555667899999


Q ss_pred             HHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 025348          146 IAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTID  225 (254)
Q Consensus       146 ~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d  225 (254)
                      ++++||++|+|||++.|+||+|+++|++++++....+..+.....  .+.....++  ..+.....+.+.++.+|.+..+
T Consensus       191 ~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~  266 (297)
T PRK12871        191 HLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWK  266 (297)
T ss_pred             HHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998876554444433322  233334443  2234444566778899999998


Q ss_pred             ccchHHHHHHHH--HHHHHHHHHHHhhhh
Q 025348          226 LSDAKSMQSLYM--FIFKLYYAEFFLIHF  252 (254)
Q Consensus       226 ~~~~~~~~~f~~--~~~~~~~~~~~~~~~  252 (254)
                      .+|++.|.+-|.  +....+|+.=+.+-|
T Consensus       267 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  295 (297)
T PRK12871        267 EKSQDAGMKILPLYHASLVIYAVSIILDF  295 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            889998877774  366666655444443

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=1.2e-27  Score=210.42  Aligned_cols=163  Identities=15%  Similarity=0.201  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHH-HH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWW-IV   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~-~~   77 (254)
                      ++..++++++|++||++|+|+|++++|  +||+|||++|++||+.++..+  ..+|+.+. ...|+....+.. ++. ..
T Consensus        54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l--~~~g~~ll~~~~n~~~~~l~~-~~~~~~  130 (306)
T PRK13362         54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL--GVAGFGLLAAFTNPLAALFAA-FGYVVY  130 (306)
T ss_pred             HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence            578899999999999999999998764  799999999999999999888  77777644 345655443432 333 34


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      .+.||.     ++||++..+++.+++.++.++.+|+.+     ..|   +.+...+++.....+|+...+...+++|+||
T Consensus       131 ~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a-----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~D  197 (306)
T PRK13362        131 VGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA-----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFND  197 (306)
T ss_pred             HHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            678983     589999999998888877666666654     223   2344555566778899999999999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISV  180 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~  180 (254)
                      |+++|+||+|+++|+|++++...
T Consensus       198 y~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        198 YAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHHCCCeeeceecChHHHHHHHH
Confidence            99999999999999998877443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=2.9e-27  Score=205.87  Aligned_cols=185  Identities=16%  Similarity=0.138  Sum_probs=141.3

Q ss_pred             ChHHHHHHHHHHHhhcccchh--hhhcc--CCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcch-----hHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVE--IDKVN--KPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRS-----PPLFI   69 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~-----~~~~~   69 (254)
                      +++++++|.++|..|||+|.+  .|+.+  .|+|++++|.+++++++.....+  ++.++|+.+.+..++     +++..
T Consensus        34 ~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~  113 (284)
T TIGR00751        34 LATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIA  113 (284)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence            367899999999999999996  36533  46899999999999999887776  345566666655553     14444


Q ss_pred             HHHHHHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHh
Q 025348           70 GLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFV  149 (254)
Q Consensus        70 ~~~~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (254)
                      .++++.+.++.||.  ||+++|+++++|..++.+++..++...+|.  |+.      .++...++..+..++.+.+++++
T Consensus       114 lg~~~~~~~~~Yt~--gP~~l~y~gLGE~~v~i~~G~l~v~g~~yv--q~~------~~~~~~ll~sl~~g~l~~~il~~  183 (284)
T TIGR00751       114 LGALCIAAAITYTV--GSKPYGYAGLGDISVLVFFGPLAVLGTQYL--QAH------RVDWVGILPAVATGLLACAVLNI  183 (284)
T ss_pred             HHHHHHHHhHhhcC--CCCccccCchHHHHHHHHHHHHHHHHHHHH--hcC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999995  788999999999887766665444333433  332      23444454455667788999999


Q ss_pred             cCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhh
Q 025348          150 KDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGA  195 (254)
Q Consensus       150 ~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~  195 (254)
                      ||++|+|+|+++|+||+|+++|+|++++++..+...+|...+....
T Consensus       184 Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~  229 (284)
T TIGR00751       184 NNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML  229 (284)
T ss_pred             cCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888876655433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.96  E-value=8.2e-28  Score=206.48  Aligned_cols=162  Identities=33%  Similarity=0.539  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhc--cCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKV--NKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~--n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++.++.+.++|..||+.|+|+|+.  |+|+||+++|+++++++...+..+  .++++.+++..++..+.+. .+..+.++
T Consensus        30 l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~--~~l~l~l~~~~~~~~~~~~-~~~~~~~~  106 (257)
T PF01040_consen   30 LAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALIL--LLLGLLLALLLGPWFLLIL-LLGFLLGL  106 (257)
T ss_pred             HHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHH--HHHHHHHHHhcCchhHHHH-HHHHHHHH
Confidence            456789999999999999999999  889999999999999999988888  7888887777776665554 45666779


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      .||   ||+|+||++..+++..+..++.....+++.      .++  ..+.+.........++.......+|++|+|+|+
T Consensus       107 ~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~  175 (257)
T PF01040_consen  107 LYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDR  175 (257)
T ss_pred             HHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999   677899999988877766666444444432      121  112333333444466777888888999999999


Q ss_pred             HcCCcccceeechHHHHH
Q 025348          160 EFGLRTLPVILGKEKVFS  177 (254)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~  177 (254)
                      +.|+||+|+++|+++++.
T Consensus       176 ~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  176 KAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HcCCcchHHHHHHHHHHH
Confidence            999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=4.8e-27  Score=205.47  Aligned_cols=178  Identities=26%  Similarity=0.319  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHH-HhcchhHHHHHHHHHHHHH
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMG-IMLRSPPLFIGLITWWIVG   78 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~-~~~~~~~~~~~~~~~~~~~   78 (254)
                      +++++.+.++|++||+.|+|+|+.|+|+||.+++    +++......+  ++..++..+. ...|+..+... +++.+++
T Consensus        43 ~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~  117 (285)
T PRK12872         43 LITFLIAAAVYIINYLTDLEEDIINKPERVVFSE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILG  117 (285)
T ss_pred             HHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHH
Confidence            5788999999999999999999999999998854    4444433333  1244444432 33465554443 5677789


Q ss_pred             hHhcCCCccc-cccccchhHHHHHHHHHHHH-hhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348           79 AAYSIDLPLL-RWKGSPLMAAVTIMILNGLL-LQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE  156 (254)
Q Consensus        79 ~~Ys~~~pp~-~lKr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e  156 (254)
                      +.||.  ||. ++||.|..++...+..|+.. +..|++.  +    +.  ..+.+.+......+++++..+.++|++|+|
T Consensus       118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~--~----~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e  187 (285)
T PRK12872        118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYY--Y----QL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIE  187 (285)
T ss_pred             HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh--c----cc--ccchHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            99995  433 68999988887766666643 3333332  1    11  123334444455667788899999999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348          157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG  194 (254)
Q Consensus       157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g  194 (254)
                      +|++.|+||+|+++|+|+++++...+..+++...+...
T Consensus       188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~  225 (285)
T PRK12872        188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGV  225 (285)
T ss_pred             hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888777665443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=2.1e-26  Score=199.93  Aligned_cols=174  Identities=22%  Similarity=0.246  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY   81 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y   81 (254)
                      +++.+...++|++||++|+|+|++|+|+||.+    +++.+..+..+.  .++|+.+++..|.. + + .+++.+.++.|
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la--~llGl~La~~~g~~-l-l-~ll~~l~g~lY  135 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLA--FLLGTYILAMDGML-L-L-AFLPFITGYLY  135 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHH--HHHHHHHHHHHhHH-H-H-HHHHHHHHHHh
Confidence            45678899999999999999999999999987    788888888777  88888888887743 2 3 35677789999


Q ss_pred             cCC--Cc--cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           82 SID--LP--LLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        82 s~~--~p--p~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      |.+  .+  |.|+|+.+..+++..+..+|.....+  .    +....  .. .+.....++.....++++.+||++|+|+
T Consensus       136 S~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~----g~~~~--~~-~~~~~i~l~~~~~l~~~~iindirDiEG  206 (307)
T PRK13591        136 SKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A----GSYCG--SL-IPVGLIFLFFGVKLFINSCVYDFKDVKG  206 (307)
T ss_pred             cCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H----Hhhhh--hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence            975  22  34889988888877777776422111  1    00000  00 1111112222223466778999999999


Q ss_pred             hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILT  193 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~  193 (254)
                      |++.|+||+|+++|+++++++...+..++++..+..
T Consensus       207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~  242 (307)
T PRK13591        207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIA  242 (307)
T ss_pred             HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988888888766443

>PLN02776 prenyltransferase

Probab=99.95  E-value=6.5e-26  Score=200.12  Aligned_cols=223  Identities=14%  Similarity=0.076  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHH-
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVA-MGIMLRSPPLFIGLITWWIV-   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~-l~~~~~~~~~~~~~~~~~~~-   77 (254)
                      +|+.++++++|++||++|+|+|++|+|  +||+|+|++|+++|+.+++.+  .++|+. +++..|+.+..++ +.+.++ 
T Consensus        36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l--~~~g~~~l~~~~n~l~~~l~-~~~~~ly  112 (341)
T PLN02776         36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVV--GAAGVALLAYKTNMLTAGLG-AGNILLY  112 (341)
T ss_pred             HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            688999999999999999999999876  799999999999999999988  777774 4556787766654 344443 


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      ...||.      +||++.+....++..++....+||.+     +.|   +.+.+.++++....+|+....+...++|+||
T Consensus       113 ~~vYt~------lKR~t~~~~~lG~~~Ga~ppL~Gw~A-----vtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD  178 (341)
T PLN02776        113 AFVYTP------LKQIHPANTWVGAVVGAIPPLMGWAA-----ASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDD  178 (341)
T ss_pred             HHHHHh------HccCCchhHHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            557983      89999887766666665555566543     333   2445566667778899998888888999999


Q ss_pred             hHHcCCcccceee--chHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-hHHHHH
Q 025348          158 DKEFGLRTLPVIL--GKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD-AKSMQS  234 (254)
Q Consensus       158 D~~~G~~Tl~v~~--G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~  234 (254)
                      |+++|++++|+.-  |+++++.+....+.+....++..+... .++  .++..+..+....+.++++..+.+| +...+.
T Consensus       179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~  255 (341)
T PLN02776        179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNANARKM  255 (341)
T ss_pred             HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            9999999999976  455555544333333222222211111 111  2344555555666777776665444 445556


Q ss_pred             HHHHHHHHHH
Q 025348          235 LYMFIFKLYY  244 (254)
Q Consensus       235 f~~~~~~~~~  244 (254)
                      |+.+++.+..
T Consensus       256 F~~Sl~yL~~  265 (341)
T PLN02776        256 FHGSLLYLPA  265 (341)
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=3.1e-25  Score=194.49  Aligned_cols=188  Identities=19%  Similarity=0.171  Sum_probs=140.5

Q ss_pred             ChHHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWI   76 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~   76 (254)
                      +++++++|.++|.+|||+|++  .|+. +++ ...++..+++++......+  ++.++|+.+.+..|+ +++..++++.+
T Consensus        54 ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~  130 (304)
T PRK07419         54 LLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCF  130 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHH
Confidence            368899999999999999998  6774 232 2445555789988877766  445556666666664 44444567888


Q ss_pred             HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348           77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE  156 (254)
Q Consensus        77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e  156 (254)
                      .++.||.  ||+++||++++|..++.+++..++...+|.  |+.      +++...+...+..++.+.+..++||++|+|
T Consensus       131 ~~~~YT~--gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv--~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e  200 (304)
T PRK07419        131 LGYLYQG--PPFRLGYQGLGEPLCFLAFGPLAVAAALYS--QTP------SWSLIPLAASIILGLATSLILFCSHFHQVE  200 (304)
T ss_pred             HhheccC--CCcccCCCCchHHHHHHHHHHHHHHHHHHH--hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            9999994  889999999999887766665544444443  332      234455555666778899999999999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348          157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL  201 (254)
Q Consensus       157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  201 (254)
                      +|++.|+||+|+++|+|++++++..+...+|...+........+|
T Consensus       201 ~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~  245 (304)
T PRK07419        201 DDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPW  245 (304)
T ss_pred             hHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999988888887655443333444

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=4.1e-25  Score=191.53  Aligned_cols=181  Identities=19%  Similarity=0.162  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHh----hcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHH-HHHHHHHhcchhHHHHHHHHH
Q 025348            2 VPAILMNIFVTAI----NQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTL-QSVAMGIMLRSPPLFIGLITW   74 (254)
Q Consensus         2 ~~~~l~~~a~~~~----Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~-l~l~l~~~~~~~~~~~~~~~~   74 (254)
                      +.++++|...|..    |||+|+|.|+.|+|++.. .|.++++|+.......  ++.+ .++.+....++. ......++
T Consensus        37 ~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~l~~~a  114 (282)
T PRK13105         37 VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWA-SGLVLAVS  114 (282)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence            4566677777666    999999999999875432 5889999985554444  1122 333333333433 33334578


Q ss_pred             HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                      ++.++.||.  ||.|+|+++++++++..+........|.+.     . ++  ..+.+.+.....+.+|+.+++.+||+||
T Consensus       115 i~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irD  184 (282)
T PRK13105        115 VFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL-----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQD  184 (282)
T ss_pred             HHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH-----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            888999994  788999999999854333222112233222     1 22  1334445555667889999999999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG  194 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g  194 (254)
                      +|+||+.|+||+|+++|+|++.+++..++.+++++.+..+
T Consensus       185 ie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        185 VVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             hHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888776444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=6.3e-25  Score=191.29  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=137.6

Q ss_pred             ChHHHHHHHHHHHhhcccchhh--hhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVEI--DKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWI   76 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~~--D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~   76 (254)
                      +++++++|.++|.+|||+|.+.  |+.+.  ....++..+++++......+  ++...|+.+.+..+ ++++..+.++.+
T Consensus        41 li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~  117 (285)
T TIGR02235        41 LIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCF  117 (285)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence            3688999999999999999984  76432  12223334678887766665  34555566666555 444444567888


Q ss_pred             HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348           77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE  156 (254)
Q Consensus        77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e  156 (254)
                      .++.||.  ||+++||++++|..++.+++..++...+|.  |+.      ++++..+...+..++.+.+..+.||+||+|
T Consensus       118 ~~~~Yt~--gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv--qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e  187 (285)
T TIGR02235       118 LGYLYQG--PPFRLGYQGLGEPICWLCFGPLAIAAALYA--QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVE  187 (285)
T ss_pred             HHHhhcC--CCcccCCCCccHHHHHHHHHHHHHHHHHHH--hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            9999994  889999999999887766665544444443  332      244555555667788899999999999999


Q ss_pred             hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348          157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL  201 (254)
Q Consensus       157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  201 (254)
                      +|++.|+||+|+++|+|++++++..+...+|+..+........+|
T Consensus       188 ~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~  232 (285)
T TIGR02235       188 DDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW  232 (285)
T ss_pred             hHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999998888887654433333334

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=99.94  E-value=2.5e-24  Score=189.76  Aligned_cols=190  Identities=19%  Similarity=0.254  Sum_probs=134.2

Q ss_pred             ChHHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHHH-HHHHHHHHH-HhcchhHHHHHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVIST-MTLQSVAMG-IMLRSPPLFIGLITWWI   76 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~-a~~l~l~l~-~~~~~~~~~~~~~~~~~   76 (254)
                      +++++++|.++|.+|||+|++  .|+.++..+.-..|  |+++++..+..+. ..++|.++. ...+.+.++..++++.+
T Consensus        57 ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~  134 (315)
T PLN02922         57 LLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAIL  134 (315)
T ss_pred             HHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            468999999999999999998  57643322222234  9999988877771 112333333 21122445454567889


Q ss_pred             HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHHHHHhcCC
Q 025348           77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRP----LEFTKPLLFAAAFMGIFNIAIAFVKDL  152 (254)
Q Consensus        77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (254)
                      .++.||.  ||+++||++++|..++.+++..++ .+.|.. |+...+..    ...+...+...+..++++.+.+++||+
T Consensus       135 ~~~~Yt~--gP~pl~y~gLGE~~v~i~fG~l~v-~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~  210 (315)
T PLN02922        135 CGYVYQC--PPFRLSYKGLGEPLCFAAFGPLAT-TAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHF  210 (315)
T ss_pred             HHHHHhc--CCcccccCcchHHHHHHHHHHHHH-HHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999995  889999999999887666554444 444431 33211110    012344555667788899999999999


Q ss_pred             CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhh
Q 025348          153 PDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGAS  196 (254)
Q Consensus       153 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~  196 (254)
                      ||+|+|++.|+||+|+++|+|++++++..+...+|...+.....
T Consensus       211 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  254 (315)
T PLN02922        211 HQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLL  254 (315)
T ss_pred             cchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888876555433

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.93  E-value=7.4e-24  Score=182.33  Aligned_cols=182  Identities=20%  Similarity=0.242  Sum_probs=138.9

Q ss_pred             ChHHHHHHHHHHHhhcccchh--hhhc----cCCCCccccCccCHHHHHHHHHHHH--HHHHHHHHHHhcchhHHHHHHH
Q 025348            1 MVPAILMNIFVTAINQLSDVE--IDKV----NKPHLPLASGDFSIGEGVAIAVIST--MTLQSVAMGIMLRSPPLFIGLI   72 (254)
Q Consensus         1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~----n~~~Rpl~sG~ls~~~a~~~~~~~~--a~~l~l~l~~~~~~~~~~~~~~   72 (254)
                      ++++++++..+|..|||.|.+  .|.+    .+.++-+...+++++..+...+.+.  +.++++.+....++. ++..+.
T Consensus        50 Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~-~l~lG~  128 (303)
T COG1575          50 LIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWL-VLLLGL  128 (303)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Confidence            468999999999999999998  5653    2224566677788888877766661  233444444555544 455557


Q ss_pred             HHHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCC
Q 025348           73 TWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDL  152 (254)
Q Consensus        73 ~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (254)
                      ++.+.++.||.  +|++++|.|++|..++.+++...+...+|.  |+.      ..++..+...+.+++.+......||+
T Consensus       129 l~~~~g~~YTg--Gp~PlgY~gLGEi~~~vffG~l~v~g~~yi--qt~------~~~~~~ll~slp~gil~~~Il~aNNi  198 (303)
T COG1575         129 LCIAAGILYTG--GPFPLGYMGLGEIFVGVFFGPLIVLGAYYI--QTG------RLSWAILLPSLPVGILIANILLANNL  198 (303)
T ss_pred             HHHHheeeecc--CCcCcccCCHHHHHHHHHHHHHHHHHHHHH--hcc------cchHHHHHHHHHHHHHHHHHHHhccc
Confidence            88899999996  567799999999998888887666666665  432      23444555566777888999999999


Q ss_pred             CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 025348          153 PDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILT  193 (254)
Q Consensus       153 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~  193 (254)
                      ||+|+|+|.||+|+|+++|+|+++.+...++..+|++.+..
T Consensus       199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~  239 (303)
T COG1575         199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF  239 (303)
T ss_pred             ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888876543

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=3.4e-24  Score=184.56  Aligned_cols=171  Identities=13%  Similarity=0.186  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh-
Q 025348            3 PAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY-   81 (254)
Q Consensus         3 ~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y-   81 (254)
                      ..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+  .++++.++...     ... +...+..+.| 
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L--~~~~l~L~~l~-----~i~-i~~~~i~~lY~  125 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFI--VAVSVLLNVLF-----MNN-VGWFLFLYIYG  125 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHH--HHHHHHHHHHH-----HHH-HHHHHHHHHHH
Confidence            45567899999999999999999999999999999999999988887  66665554332     111 1233345566 


Q ss_pred             ----cCCCccccccccchhHHHHHHHHHHHHhhhH--HHHH-HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           82 ----SIDLPLLRWKGSPLMAAVTIMILNGLLLQFP--YFVH-VQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        82 ----s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                          +.     ++|+.++.+|+..+...+..+..+  ++.. ......|.+ ......+.+.+...+...++++.+|++|
T Consensus       126 ~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD  199 (299)
T PRK13592        126 TLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA  199 (299)
T ss_pred             HHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence                64     689999999876665544333222  2211 001112211 1111112223334456889999999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHH
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGA  189 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~  189 (254)
                       |||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus       200 -~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        200 -PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             -Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence             88886 5999999999999988887776555443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=5.8e-23  Score=178.49  Aligned_cols=169  Identities=20%  Similarity=0.313  Sum_probs=108.0

Q ss_pred             HHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHHHHhHhcCCCc
Q 025348            9 IFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLP   86 (254)
Q Consensus         9 ~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~p   86 (254)
                      .+.|.+||++|+|+||.|+|++.   |+...++........  ++..+++.+....++..... .+...+..+.||  .|
T Consensus        59 l~~y~iND~~D~D~Dr~~prk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~p  132 (282)
T PRK12875         59 VFLYGVNDVFDADTDELNPKKDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--AP  132 (282)
T ss_pred             HHHhcchhhhhhhccccCCCccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CC
Confidence            34455899999999999988654   222222222111111  11344444444434332222 244667789999  48


Q ss_pred             cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHcCCccc
Q 025348           87 LLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTL  166 (254)
Q Consensus        87 p~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl  166 (254)
                      |+|+|++|..+..+++... ..+..+++.  +   .|   +.+...  +.+...+|+.+.+++||+||+|+|++.|+||+
T Consensus       133 P~rlk~~p~~~~~~~g~~~-~~~~~~y~~--~---tg---~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tl  201 (282)
T PRK12875        133 PLRFKTTPVLDSLSNGLYI-LPGVAAYAL--V---SG---SLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTT  201 (282)
T ss_pred             CccchhccHHHHHHHHHHH-HHHHHHHHH--H---cC---CCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccc
Confidence            8999999998875433221 222223322  1   22   122222  23334689999999999999999999999999


Q ss_pred             ceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348          167 PVILGKEKVFSISVSMLLMAYGAAILTG  194 (254)
Q Consensus       167 ~v~~G~~~~~~~~~~~~~~~~~~~~~~g  194 (254)
                      |+++|+|++++++..++.++.......+
T Consensus       202 av~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        202 ATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             hhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888877777665554

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-22  Score=173.19  Aligned_cols=162  Identities=16%  Similarity=0.155  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHH-H
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWWI-V   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~~-~   77 (254)
                      +|..+..+++|++|+++|+|+|++.+|  +||+++|+++++|++.++.++  .++|..+. +..|+.+..+. +.+++ =
T Consensus        59 ~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L--~~~g~~~l~~~vn~laa~l~-~~gi~~Y  135 (304)
T COG0109          59 LGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVL--GVAGFSLLWFLVNLLAAVLG-LFGIFFY  135 (304)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            677889999999999999999999988  699999999999999999999  88888766 56676555443 33443 3


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      .++||.     .+||++....+.+++.|+.+..+||.+     +.|   +.+...+.+.+.+++|+-..-..-+++=+||
T Consensus       136 v~vYT~-----~lKR~T~~NiviGg~aGa~PpliGwaA-----vtg---~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D  202 (304)
T COG0109         136 VVVYTL-----WLKRRTPQNIVIGGFAGAMPPLIGWAA-----VTG---SISLGAILLFAIIFLWTPPHFWALALKYKDD  202 (304)
T ss_pred             hhhhhh-----hccCCcccceeeeeccccccccceeee-----eeC---CCCchHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            568995     689999998888888887777777643     333   2344555566667778766555556777889


Q ss_pred             hHHcCCcccceeechHHHHHHH
Q 025348          158 DKEFGLRTLPVILGKEKVFSIS  179 (254)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~~~  179 (254)
                      .+++|+..+|++-|++.+++-.
T Consensus       203 Y~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         203 YKAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             HHHcCCCcccccccHHHHHHHH
Confidence            9999999999999999987744

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.75  E-value=3e-16  Score=137.13  Aligned_cols=97  Identities=26%  Similarity=0.358  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++..++++++|++||++|+|+||+|  ||+||++||++|+++|..+..++  .++|+.+++.+|+...... ....+..+
T Consensus        53 l~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l--~~~~l~la~~l~~~~~~~~-~~~~~~~~  129 (295)
T PRK12324         53 VLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL--LVASLALAYLLSPKLALVL-LVYLVLNL  129 (295)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3456788999999999999999997  67899999999999999998888  7778877777776554443 45666778


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNG  106 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~  106 (254)
                      .||.     ++||++..++++.++.++
T Consensus       130 ~Ys~-----~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324        130 AYSF-----KLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             HhhH-----HhcCCchhhHHHHHHHHH
Confidence            9995     689999998877665554

>PRK08238 hypothetical protein; Validated

Probab=99.69  E-value=2.6e-15  Score=139.48  Aligned_cols=143  Identities=27%  Similarity=0.356  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA   79 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~   79 (254)
                      ++..++++++|++||+.|+|+||+|  ||+||++||++|+++|+.+..++  .++|+.+++.+|+..+ ...+..++...
T Consensus       233 ~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l--~~~~~~l~~~l~~~~~-~~~~~~~~~~~  309 (479)
T PRK08238        233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL--LLAGLALALALGPAFL-LVLLAYLALTL  309 (479)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence            4667899999999999999999999  56899999999999999999988  8888888887786433 33345666778


Q ss_pred             HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348           80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK  159 (254)
Q Consensus        80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  159 (254)
                      +||.     ++||++..++++.++.++.-+..|+..      .+    .+.+.+++ ++..+........+...|.++++
T Consensus       310 ~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~  373 (479)
T PRK08238        310 AYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IG----VALSFWLL-AFSMFFFLSLALVKRYTELRRAL  373 (479)
T ss_pred             HhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hc----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence            9994     699999999877666554333333321      12    12233322 22233455567788888888888


Q ss_pred             HcCC
Q 025348          160 EFGL  163 (254)
Q Consensus       160 ~~G~  163 (254)
                      ..|.
T Consensus       374 ~~~~  377 (479)
T PRK08238        374 QRGK  377 (479)
T ss_pred             hcCC
Confidence            8775

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.33  E-value=3.5e-13  Score=111.00  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHHHHHHHHH---HHHHhcchh---HHHHHHHHH
Q 025348            3 PAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSV---AMGIMLRSP---PLFIGLITW   74 (254)
Q Consensus         3 ~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l---~l~~~~~~~---~~~~~~~~~   74 (254)
                      +.+.++.++|.+|.|+|..  +|++...+|.++...+++++...+...+  ...|.   .+...++|.   .+.+..+.+
T Consensus       107 avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~l--y~~gc~~~~~l~~lsp~klehlaliyfgg  184 (359)
T KOG4581|consen  107 AVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFL--YMAGCGCAACLAVLSPAKLEHLALIYFGG  184 (359)
T ss_pred             hheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHH--HHhcchHHHHHHhCCHhhhhhhhhhhccC
Confidence            3455788999999999986  7887777999999999999999988877  44443   333344432   233333345


Q ss_pred             HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348           75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD  154 (254)
Q Consensus        75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  154 (254)
                      +--.++|+.+.   .+|+..+++.++...++...+...+.  .|++...    + .|.. -.+...+-+-++.+.|+.+|
T Consensus       185 ls~sflytggi---gfkyialgdliili~fgpiavlfaf~--~q~g~l~----~-~~l~-yaiplalnteailhsnntrd  253 (359)
T KOG4581|consen  185 LSGSFLYTGGI---GFKYIALGDLIILILFGPIAVLFAFA--IQTGHLA----I-FPLG-YAIPLALNTEAILHSNNTRD  253 (359)
T ss_pred             cccceeEeccc---ceEEEeccCEEEEEeechHHHHHHHH--HhcCcee----E-Eeeh-heeeeccchHHHhccCCCcc
Confidence            55567899863   57888776643322333322222221  1332111    1 0111 11122344667788999999


Q ss_pred             hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 025348          155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPF  199 (254)
Q Consensus       155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~  199 (254)
                      .|.||++|+-|+++.+|+..+-.++..++...|....+.+..+..
T Consensus       254 ~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si  298 (359)
T KOG4581|consen  254 ADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI  298 (359)
T ss_pred             cccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888888888888887666655543

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.25  E-value=2.1e-11  Score=105.05  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHH-
Q 025348            2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWWIV-   77 (254)
Q Consensus         2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~~~-   77 (254)
                      +|+.+..++.|++||+.+.+.|++.+|  .||+++|++++.+|..+..+.  ...|+.+. +-.|+....+. ...+++ 
T Consensus       134 vGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~--g~~G~slL~~gvNpl~a~Lg-a~Ni~LY  210 (409)
T KOG1380|consen  134 VGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLT--GTAGVSLLAFGVNPLAAALG-AGNIFLY  210 (409)
T ss_pred             hhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHh--ccccceeeeecccHHHHHHh-hcchhee
Confidence            467889999999999999999999987  699999999999999998877  66666444 33676544332 223322 


Q ss_pred             HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348           78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG  157 (254)
Q Consensus        78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  157 (254)
                      ..+|+      .+||.-.....+++..++++..+||-.     ..|   ..+...+++......|.+-.-..-...=++|
T Consensus       211 ~~vYT------PlKrihiinTWvGavVGAIPPLMGwAA-----asg---~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~D  276 (409)
T KOG1380|consen  211 AGVYT------PLKRIHIINTWVGAVVGAIPPLMGWAA-----ASG---LLDPGAMILAGILYAWQFPHFNALSWNLRND  276 (409)
T ss_pred             ecccc------chhhhhhhhhHHHHHhccCCccchhhh-----hcc---CCCccHHHHHHHHHHhcccchhhhhhhhchh
Confidence            34566      289987776666776666666677643     122   1223334444455567653322223333467


Q ss_pred             hHHcCCcccceeec---hHHHHHHHHHHHHHH
Q 025348          158 DKEFGLRTLPVILG---KEKVFSISVSMLLMA  186 (254)
Q Consensus       158 D~~~G~~Tl~v~~G---~~~~~~~~~~~~~~~  186 (254)
                      .++.|.+.+++.=.   ++.+.+....++.++
T Consensus       277 Ys~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  277 YSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             hhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            88999999988753   333444444444444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=92.47  E-value=0.41  Score=42.11  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCCC
Q 025348            3 PAILMNIFVTAINQLSDVEIDKVNKPH   29 (254)
Q Consensus         3 ~~~l~~~a~~~~Nd~~D~~~D~~n~~~   29 (254)
                      ++.+..+..+..|+..|.|+|++|.|+
T Consensus       184 p~gil~~~Il~aNNirDie~D~~~gk~  210 (303)
T COG1575         184 PVGILIANILLANNLRDIEEDIRNGKY  210 (303)
T ss_pred             HHHHHHHHHHHhcccccchhHHhcCCc
Confidence            455677888999999999999999874

>PRK13591 ubiA prenyltransferase; Provisional

Probab=90.63  E-value=0.98  Score=39.97  Aligned_cols=68  Identities=16%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             HhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH-H----HHHHHHHHHHh-cchhHHHHHHHHHHHHHhHhcC
Q 025348           13 AINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS-T----MTLQSVAMGIM-LRSPPLFIGLITWWIVGAAYSI   83 (254)
Q Consensus        13 ~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~-~----a~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~   83 (254)
                      .+||+-|.|.|+.+.+ +-|+.=|+   +.+..+...+ +    ..+++..+... ..|...+.+.+.+++....|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            6899999999998754 66655443   3333332222 1    11112222221 1233333345567777788986

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.27  E-value=1.5  Score=39.09  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=27.1

Q ss_pred             HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348            6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS   49 (254)
Q Consensus         6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~   49 (254)
                      +..+.....||+-|.|+|+.+.+ +-|.   ++.++.+......+
T Consensus       200 ~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l  241 (317)
T PRK13387        200 FTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAIL  241 (317)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHH
Confidence            45566688999999999998865 4443   34455555544433

>PLN02922 prenyltransferase

Probab=89.05  E-value=1.9  Score=38.45  Aligned_cols=41  Identities=7%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHH
Q 025348            5 ILMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVI   48 (254)
Q Consensus         5 ~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~   48 (254)
                      -+..+.....||+-|+|+|+++.+ +-|.   ++.++.+......
T Consensus       198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~  239 (315)
T PLN02922        198 GLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHH
Confidence            355677889999999999999865 4443   3445555544333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.94  E-value=1.9  Score=38.14  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHH
Q 025348            6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAV   47 (254)
Q Consensus         6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~   47 (254)
                      +........||+-|+|+|+++.+ +-|.   ++.++.+.....
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~  224 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP  224 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence            45567778999999999998865 4443   334445544433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.66  E-value=2.3  Score=36.99  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348            5 ILMNIFVTAINQLSDVEIDKVNK-PHLPLASGD   36 (254)
Q Consensus         5 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   36 (254)
                      ++....-+.+||.-|+|.|+++. |+-|..-|+
T Consensus       171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            34556667899999999999754 466655554

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=88.37  E-value=4.5  Score=35.75  Aligned_cols=43  Identities=14%  Similarity=0.052  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcCCCChhhhHHcCCcccceee---chHHHHHHHHHHH
Q 025348          140 GIFNIAIAFVKDLPDVEGDKEFGLRTLPVIL---GKEKVFSISVSML  183 (254)
Q Consensus       140 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~---G~~~~~~~~~~~~  183 (254)
                      .+...+...+||+.|.|.|++.++ +=|+.-   ..+.+......+.
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~  109 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF  109 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence            445667788999999999987763 334433   4444444443333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=87.95  E-value=3.9  Score=35.47  Aligned_cols=33  Identities=18%  Similarity=0.062  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCCChhhhHHcCCcccceeech
Q 025348          139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGK  172 (254)
Q Consensus       139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  172 (254)
                      ..+...+...+||+.|.|.|++. +++=|..-|+
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            33445667789999999999988 6777777774

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=86.75  E-value=12  Score=32.75  Aligned_cols=33  Identities=24%  Similarity=0.164  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhcCCCChhhhHHcCC-cccceeec
Q 025348          139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILG  171 (254)
Q Consensus       139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G  171 (254)
                      ..+...+...+||+.|+|-|++.-+ |.=|..=|
T Consensus        56 ~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG   89 (289)
T COG0382          56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSG   89 (289)
T ss_pred             HHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence            3445666778999999999998876 34444444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=85.51  E-value=13  Score=32.43  Aligned_cols=44  Identities=11%  Similarity=0.077  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhhcccchhhhhcc-CCCCccccCccCHHHHHHHHHHH
Q 025348            3 PAILMNIFVTAINQLSDVEIDKVN-KPHLPLASGDFSIGEGVAIAVIS   49 (254)
Q Consensus         3 ~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ls~~~a~~~~~~~   49 (254)
                      +..+...+...+|++-|+|.|++. +++-|.   ++.++.+..+...+
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~  217 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAAC  217 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHH
Confidence            455667777899999999999865 444443   34455555554444

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.79  E-value=4.4  Score=36.34  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348            4 AILMNIFVTAINQLSDVEIDKVNK-PHLPLASGD   36 (254)
Q Consensus         4 ~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   36 (254)
                      ..+...+...+||..|+|.|+... ++-|+.=|+
T Consensus       189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            445566777899999999998764 455654443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=84.56  E-value=19  Score=31.92  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=18.4

Q ss_pred             HhcCCCChhhhHHcCCcccceeech
Q 025348          148 FVKDLPDVEGDKEFGLRTLPVILGK  172 (254)
Q Consensus       148 ~~~~~~D~e~D~~~G~~Tl~v~~G~  172 (254)
                      .+||+.|+|-|+. ++++-|+.=|+
T Consensus        71 ~iNd~~D~~iD~i-nkp~rPiasG~   94 (308)
T PRK12887         71 GLNQLTDIEIDRI-NKPHLPLAAGE   94 (308)
T ss_pred             HHhhhhhHHHHhc-CCCCCCcCCcc
Confidence            3999999999995 55777765554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=84.49  E-value=4.6  Score=35.41  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=27.7

Q ss_pred             HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348            6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS   49 (254)
Q Consensus         6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~   49 (254)
                      +...+....||.-|+|+|+.+.+ +-|.   ++.++.+......+
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l  213 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWV  213 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHH
Confidence            45677788999999999998755 4443   34455555544443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=83.95  E-value=5.8  Score=34.67  Aligned_cols=42  Identities=19%  Similarity=0.153  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348            5 ILMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS   49 (254)
Q Consensus         5 ~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~   49 (254)
                      .+........||+-|.|.|+++.+ +-|.-   +.++.+......+
T Consensus       178 ~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~---lG~~~a~~~~~~l  220 (293)
T PRK06080        178 GLLIGAVLLANNIRDIETDRENGKNTLAVR---LGDKNARRLHAAL  220 (293)
T ss_pred             HHHHHHHHHhcCCCcchhHHHcCCeeEEee---ECcHhHHHHHHHH
Confidence            445667778999999999997754 44433   3344444444333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=83.86  E-value=7.1  Score=34.42  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=17.5

Q ss_pred             HHHHHHHHHhcCCCChhhhHHc
Q 025348          140 GIFNIAIAFVKDLPDVEGDKEF  161 (254)
Q Consensus       140 ~~~~~~~~~~~~~~D~e~D~~~  161 (254)
                      ++...+...+||+.|+|.|++.
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~   77 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLH   77 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccC
Confidence            3445566789999999999986

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=83.86  E-value=5.9  Score=34.67  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348            6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS   49 (254)
Q Consensus         6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~   49 (254)
                      +...+...+|++-|.|.||++.. +-|   -++.++.+..+...+
T Consensus       171 ~~~~a~~ii~~irDie~Dr~~G~~Tlp---v~lG~~~a~~~~~~l  212 (282)
T PRK13105        171 LWGMASHAFGAVQDVVADREAGIASIA---TVLGARRTVRLAVGL  212 (282)
T ss_pred             HHHHHHHHHHhCcchHhHHHcCCccch---HHhcHHHHHHHHHHH
Confidence            34677789999999999997643 444   345667777766665

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=83.72  E-value=9.1  Score=32.20  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=23.8

Q ss_pred             HHHHHHHHhcCCCChhhhHHc-CCcccceeechHH
Q 025348          141 IFNIAIAFVKDLPDVEGDKEF-GLRTLPVILGKEK  174 (254)
Q Consensus       141 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v~~G~~~  174 (254)
                      +........||+.|.|.|+.. +++.-|..-|+-+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            445667889999999999996 3445555544443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=83.07  E-value=6.7  Score=34.44  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhcCCCChhhhHHcCC-cccceeech
Q 025348          140 GIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILGK  172 (254)
Q Consensus       140 ~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~  172 (254)
                      .+...+-..+||+.|+|-|++..| |+=|..=|+
T Consensus        55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            344566678999999999998765 466766664

>PLN00012 chlorophyll synthetase; Provisional

Probab=82.55  E-value=7.1  Score=35.64  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348            6 LMNIFVTAINQLSDVEIDKVN-KPHLPLASGD   36 (254)
Q Consensus         6 l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   36 (254)
                      +...+....||+-|+|.|++. +|.-|+.-|+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            455667889999999999865 5677766664

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=82.16  E-value=8.2  Score=34.24  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             HHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348            7 MNIFVTAINQLSDVEIDKVN-KPHLPLASGD   36 (254)
Q Consensus         7 ~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   36 (254)
                      ...+....||+.|+|.|++. +|+-|+.-|+
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            34455789999999999876 5566765554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=81.80  E-value=8.3  Score=33.60  Aligned_cols=33  Identities=27%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348            4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGD   36 (254)
Q Consensus         4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   36 (254)
                      .++-+..-...|++.|+|.|++. .|.-|+.-|+
T Consensus       169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            34445566678999999999865 5677776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=81.64  E-value=11  Score=32.65  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCCChhhhHHcCCccccee---echHHHHHHHHHH
Q 025348          139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVI---LGKEKVFSISVSM  182 (254)
Q Consensus       139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---~G~~~~~~~~~~~  182 (254)
                      ..+...+-..+||+.|+|-|++.. ++=|..   +.++.+......+
T Consensus        46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l   91 (279)
T PRK09573         46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL   91 (279)
T ss_pred             HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence            344566778899999999999753 444443   3445454444333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=80.40  E-value=20  Score=31.59  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCCChhhhHHcCCccccee---echHHHHHHHHHH
Q 025348          139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVI---LGKEKVFSISVSM  182 (254)
Q Consensus       139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---~G~~~~~~~~~~~  182 (254)
                      .++.+..-..+||+.|+|-|+. ++..=|+-   ...|.++.....+
T Consensus        55 vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence            3344566788999999999964 45555543   3455555544333

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=80.33  E-value=9.3  Score=33.22  Aligned_cols=30  Identities=23%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             HHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348            7 MNIFVTAINQLSDVEIDKVNK-PHLPLASGD   36 (254)
Q Consensus         7 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   36 (254)
                      ...+....||+.|.|.|+++. ++-|..=|+
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            344567899999999999764 456655444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00