Citrus Sinensis ID: 025363
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.960 | 0.697 | 0.437 | 4e-53 | |
| O81646 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.960 | 0.679 | 0.417 | 7e-52 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.960 | 0.679 | 0.421 | 1e-51 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.968 | 0.673 | 0.417 | 2e-51 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.960 | 0.675 | 0.421 | 3e-51 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.657 | 0.427 | 6e-51 | |
| Q43239 | 354 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.675 | 0.417 | 1e-50 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.960 | 0.675 | 0.421 | 1e-50 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.661 | 0.423 | 2e-50 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.657 | 0.427 | 3e-50 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 207 bits (528), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 3/247 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S AP +L + LM W + A+LD I PF K +G A+
Sbjct: 92 LYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAF 150
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + + MS S M +LE Y GF+G+K +VDVGG G L MI+ K+
Sbjct: 151 EYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYP 210
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINF+LP VV +APS GV H+GGDMF S+P DAIFMKW+ W+DD C+ +++N
Sbjct: 211 TI-KGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKN 269
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALP GK+I E VLP+ + S T+ ++ D+ VM + G RTE+EF+ L
Sbjct: 270 CYQALPDNGKVILAECVLPEAPDTSLATQNVVHVDV-VMLAHNPGGKERTEKEFEALAKG 328
Query: 241 AGFPHLR 247
AGF R
Sbjct: 329 AGFKEFR 335
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|O81646|COMT1_CAPCH Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 149/247 (60%), Gaps = 3/247 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+YSL + K L + +G+S AP +L + LM W + A+LD + PF K +G +
Sbjct: 101 LYSLAPVCKFLTKNGDGVSIAPILLMNQDKVLMESWYHLTDAVLDGGV-PFNKAYGMTTF 159
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + MS + M +LE Y GF+G+ +VDVGG G + MI+ K+
Sbjct: 160 EYHGTDPRFNKVFNCGMSDHTTLSMKKILEDYTGFEGLNSIVDVGGGTGATVNMIVSKYP 219
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV +GGDMF S+P ADAIFMKW+ W+DD C +++N
Sbjct: 220 SI-KGINFDLPHVIRDAPSYPGVEQVGGDMFVSVPKADAIFMKWICHDWSDDHCIKLLKN 278
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALPA GK+I E +LP+ + S T++ + GDI +M + G RTE++F+ L +
Sbjct: 279 CYEALPANGKVIIVECILPEAPDTSAATKSKVHGDI-IMLAHNPGGKERTEKDFEALANW 337
Query: 241 AGFPHLR 247
F R
Sbjct: 338 GWFSRFR 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum chinense (taxid: 80379) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 148/247 (59%), Gaps = 3/247 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+YSL + K L + +G+S AP +L + LM W + A+LD + PF K +G A+
Sbjct: 101 LYSLAPVCKLLTKNADGVSVAPLLLMNQDKVLMESWYHLTDAVLDGGV-PFNKAYGMTAF 159
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + + MS S M +LE Y GF+G+ +VDVGG G + MI+ K+
Sbjct: 160 EYHGTDPRFNKVFNRGMSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYP 219
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDL V+ +AP+ PGV H+G DMF S+P ADAIFMKW+ W+D+ C ++N
Sbjct: 220 SI-KGINFDLSHVIEDAPAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKN 278
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALPA GK++ E +LP+ + S T+ + DI VM + G RTE+EF+ L
Sbjct: 279 CYEALPANGKVLVAECILPETPDTSAATKNAVHVDI-VMLAHNPGGKERTEKEFEALAKG 337
Query: 241 AGFPHLR 247
AGF R
Sbjct: 338 AGFTGFR 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 149/249 (59%), Gaps = 3/249 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K LV + +G+S + L + LM W + A+LD I PF K +G A+
Sbjct: 105 LYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAF 163
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + K MS S M +LE Y GF+G+K LVDVGG G + I+ K+
Sbjct: 164 EYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP 223
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV H+GGDMF SIP ADA+FMKW+ W+D+ C ++N
Sbjct: 224 TI-KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKN 282
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALP GK+I E +LP + S T+ ++ D+ +M + G RT++EF+ L
Sbjct: 283 CYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDV-IMLAHNPGGKERTQKEFEDLAKG 341
Query: 241 AGFPHLRLY 249
AGF +++
Sbjct: 342 AGFQGFKVH 350
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 144/247 (58%), Gaps = 3/247 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S AP L + LM W + A++D I PF K +G A+
Sbjct: 103 LYGLAPVCKFLTKNEDGVSMAPLTLMNQDKVLMESWYHLSDAVVDGGI-PFNKAYGMTAF 161
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + + MS S M +LE Y GF G+K +VDVGG G L MI+ K+
Sbjct: 162 EYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYP 221
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV H+GGDMF S+P DAIFMKW+ W+D+ C ++N
Sbjct: 222 SI-KGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKN 280
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY ALP GK+I E VLP+ + T+ ++ D+ +M + G RTE+EF+ L
Sbjct: 281 CYDALPQNGKVILAECVLPEAPDTGLATKNVVHIDV-IMLAHNPGGKERTEKEFQGLAKA 339
Query: 241 AGFPHLR 247
AGF
Sbjct: 340 AGFKQFN 346
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S AP +L + LM W + A+LD I PF K +G A+
Sbjct: 107 LYGLAPVCKFLTKNSDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGI-PFNKAYGMTAF 165
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+GK P N + + MS S M +L+ Y+GF G+K +VDVGG G L MI+ K+
Sbjct: 166 EYHGKDPRFNKVFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYP 225
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
+ +GINFDLP VV +APS GV H+GGDMF S+P DAIFMKW+ W+D C ++N
Sbjct: 226 NL-KGINFDLPHVVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKN 284
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CYKALP GK+I E +LP+ + T+ ++ D+ +M + G RTE+EF+ G
Sbjct: 285 CYKALPKDGKVILAECILPEAPDSKLTTKNVILIDV-IMLAHNPGGKERTEKEFEAFGKQ 343
Query: 241 AGF 243
AGF
Sbjct: 344 AGF 346
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43239|COMT1_ZINEL Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 145/242 (59%), Gaps = 3/242 (1%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y L + K L+ + G+S AP +L + LM W + +LD I PF K +G A+
Sbjct: 97 YGLAPVCKFLIKNDAGVSLAPLLLMNQDKVLMESWYYLKDPVLDGGI-PFNKAYGMSAFE 155
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+GK N + M S M ++E YNGF G+K LVDVGG G L MI KH+
Sbjct: 156 YHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNGFSGLKTLVDVGGGTGASLNMITSKHKS 215
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ +GINFDLP V+A+A + G+ H+GGDMF+S+P DAIFMKW+L W+D C +++NC
Sbjct: 216 L-KGINFDLPHVIADATTYQGIEHVGGDMFESVPKGDAIFMKWILHDWSDAHCLQVLKNC 274
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
YK+LP GK+I E +LP+ + + T+ ++ D+ +M + G RTE+EF+ L A
Sbjct: 275 YKSLPENGKVIVAECILPEAPDTTPATQNVIHIDV-IMLAHNPGGKERTEKEFEALAKGA 333
Query: 242 GF 243
GF
Sbjct: 334 GF 335
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Zinnia elegans (taxid: 34245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 143/247 (57%), Gaps = 3/247 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S AP L + LM W + A+LD I PF K +G A+
Sbjct: 103 LYGLAPVCKFLTKNEDGVSMAPLALMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAF 161
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + + MS S M +LE Y GF G+K +VDVGG G L MI+ K+
Sbjct: 162 EYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYP 221
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP VV +APS PGV H+GGDMF S+P DAIFMKW+ W+D C ++
Sbjct: 222 SI-KGINFDLPHVVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKK 280
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALP GK+I E VLP+ + T+ ++ D+ +M + G RTE+EF+ L
Sbjct: 281 CYEALPENGKVILAECVLPEAPDTGLATKNVVHIDV-IMLAHNPGGKERTEKEFQVLAKA 339
Query: 241 AGFPHLR 247
+GF
Sbjct: 340 SGFKQFN 346
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+YSL + K L + +G+S A +L + LM W + A+L+ I PF K +G A+
Sbjct: 105 LYSLAPVCKFLTKNEDGVSMAALLLMNQDKVLMESWYHLKDAVLEGGI-PFNKAYGMTAF 163
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+GK P N + + MS S M +LE Y GF+G+K +VDVGG G L MI+ K+
Sbjct: 164 EYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYP 223
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV H+GGDMF S+P DAIFMKW+ W+D C ++N
Sbjct: 224 SI-KGINFDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKN 282
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
C++ALP GK+I E +LP+ + + T+ + D+ +M + G RTE+EF+ L
Sbjct: 283 CHEALPENGKVILAECLLPEAPDSTLSTQNTVHVDV-IMLAHNPGGKERTEKEFEALAKG 341
Query: 241 AGF 243
AGF
Sbjct: 342 AGF 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 143/243 (58%), Gaps = 3/243 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S +P L + LM W + AILD I PF K +G A+
Sbjct: 105 LYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGI-PFNKAYGMTAF 163
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + K MS S M +LE Y GF+G+ LVDVGG G + I+ K+
Sbjct: 164 EYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYP 223
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV H+GGDMF S+P ADA+FMKW+ W+D C ++N
Sbjct: 224 SI-KGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKN 282
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY ALP GK+I E +LP + S T+ ++ D+ +M + G RTE+EF+ L
Sbjct: 283 CYDALPENGKVILVECILPVAPDTSLATKGVVHVDV-IMLAHNPGGKERTEKEFEGLAKG 341
Query: 241 AGF 243
AGF
Sbjct: 342 AGF 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| 224069629 | 364 | beta-alanine n-methyltransferase related | 0.992 | 0.692 | 0.794 | 1e-118 | |
| 225441106 | 358 | PREDICTED: caffeic acid 3-O-methyltransf | 0.984 | 0.698 | 0.772 | 1e-116 | |
| 255556786 | 357 | o-methyltransferase, putative [Ricinus c | 0.968 | 0.689 | 0.776 | 1e-115 | |
| 147799198 | 358 | hypothetical protein VITISV_030414 [Viti | 0.984 | 0.698 | 0.764 | 1e-114 | |
| 356549592 | 355 | PREDICTED: caffeic acid 3-O-methyltransf | 0.984 | 0.704 | 0.748 | 1e-110 | |
| 15231756 | 359 | putative O-diphenol-O-methyl transferase | 0.992 | 0.701 | 0.727 | 1e-108 | |
| 449440171 | 409 | PREDICTED: caffeic acid 3-O-methyltransf | 0.992 | 0.616 | 0.709 | 1e-107 | |
| 30313849 | 375 | S-adenosyl-L-methionine: beta-alanine N- | 0.992 | 0.672 | 0.623 | 1e-90 | |
| 357464631 | 358 | Caffeic acid 3-O-methyltransferase [Medi | 0.996 | 0.706 | 0.581 | 1e-86 | |
| 6688808 | 358 | O-diphenol-O-methyl transferase [Medicag | 0.996 | 0.706 | 0.581 | 3e-86 |
| >gi|224069629|ref|XP_002326388.1| beta-alanine n-methyltransferase related [Populus trichocarpa] gi|222833581|gb|EEE72058.1| beta-alanine n-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/253 (79%), Positives = 225/253 (88%), Gaps = 1/253 (0%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLTE+GK+LVTD EGLSYAPYVLQHHQDALM WPLVH+A+LDPT EPF+K +GEPAY
Sbjct: 104 YSLTEVGKTLVTDTEGLSYAPYVLQHHQDALMKAWPLVHEAVLDPTTEPFVKANGEPAYD 163
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YYGK PEMN LM KAMSGVSVPFM ++L+GY+GFKGV+RLVDVGGSAGDCLRMIL+KH
Sbjct: 164 YYGKQPEMNELMLKAMSGVSVPFMEAMLDGYDGFKGVERLVDVGGSAGDCLRMILKKHPG 223
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ +GINFDLPEVVA+AP IPGVT++GGDMFKSIP DAIFMKW+LTTWTD+ECKLIMENC
Sbjct: 224 VRQGINFDLPEVVAKAPIIPGVTNVGGDMFKSIPDGDAIFMKWILTTWTDNECKLIMENC 283
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
YKALP GGKLIACEPVLP DS++S RTRALLEGDIFVMTIYRAKG HRTE+EFKQLG
Sbjct: 284 YKALPVGGKLIACEPVLPKDSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEEFKQLGQSV 343
Query: 242 GFPHLRLYRVLDY 254
GF + R + V DY
Sbjct: 344 GFSYFRAFYV-DY 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441106|ref|XP_002264566.1| PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/250 (77%), Positives = 222/250 (88%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT+IGK+LVTD +GLSY YVLQH+Q+ LM+ WPLVH+A++D T EPF+K +GEPAYS
Sbjct: 98 YSLTDIGKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYS 157
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YYGK PEMN LM++AMSGVSVPFM ++L GYNGF GV+RLVDVGGSAGDCLRMILQKH
Sbjct: 158 YYGKKPEMNDLMQRAMSGVSVPFMKAILNGYNGFDGVQRLVDVGGSAGDCLRMILQKHTN 217
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I EGINFDLPEVVA+AP+IPGVTH+GGDMFKS+P DAIFMKWVLTTWTD+ECKLIM+NC
Sbjct: 218 IKEGINFDLPEVVAKAPNIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNC 277
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALP GGK+IACEPVLP +S+ S RTRALLEGDIFVMTIYRAKG HRTE+EF+QLG A
Sbjct: 278 YNALPVGGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLSA 337
Query: 242 GFPHLRLYRV 251
GFPHLR + +
Sbjct: 338 GFPHLRAFYI 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556786|ref|XP_002519426.1| o-methyltransferase, putative [Ricinus communis] gi|223541289|gb|EEF42840.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/246 (77%), Positives = 219/246 (89%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLTEIGK+LVTDV GLSY YVLQHHQDALM WPLVH+A+LD T EPF K +GEPAY
Sbjct: 97 YSLTEIGKTLVTDVNGLSYGAYVLQHHQDALMRAWPLVHEAVLDSTTEPFAKANGEPAYD 156
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YYGK PEMN LM+KAMSG+SVPFM +VL GY+GF+GV+++VDVGGSAGDCL+ ILQK+
Sbjct: 157 YYGKRPEMNELMQKAMSGLSVPFMKAVLNGYDGFQGVEKIVDVGGSAGDCLKTILQKYPN 216
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ EGINFDLPEVVA+AP+IPGVTH+GGDMFKS+P+ADAIFMKW+LTTWTDDECK+IMENC
Sbjct: 217 VREGINFDLPEVVAKAPNIPGVTHVGGDMFKSVPSADAIFMKWILTTWTDDECKVIMENC 276
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
YKALP GGKLIACEPVLP+ +++S RTRALLEGDIFVMTIYRAKG HRTE+EFK+LG
Sbjct: 277 YKALPVGGKLIACEPVLPNQTDDSHRTRALLEGDIFVMTIYRAKGKHRTEEEFKKLGHSV 336
Query: 242 GFPHLR 247
GF H R
Sbjct: 337 GFSHFR 342
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799198|emb|CAN65776.1| hypothetical protein VITISV_030414 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/250 (76%), Positives = 221/250 (88%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT+IGK+LVTD +GLSY YVLQH+Q+ LM+ WPLVH+A++D T EPF+K +GEPAYS
Sbjct: 98 YSLTDIGKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYS 157
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YYGK PEMN LM++AMSGVSVPFM ++L GY+GF GV+RLVDVGGSAGDCLRMILQKH
Sbjct: 158 YYGKKPEMNDLMQRAMSGVSVPFMKAILNGYSGFDGVQRLVDVGGSAGDCLRMILQKHTN 217
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I EGINFDLPEVVA+AP+IPGVTH+GGDMFKS+P DAIFMKWVLTTWTD+ECKLIM+NC
Sbjct: 218 IKEGINFDLPEVVAKAPTIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNC 277
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALP GGK+IACEPVLP +S+ S RTRALLEGDIFVMTIYRAKG HRTE+EF+QLG A
Sbjct: 278 YNALPVGGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLSA 337
Query: 242 GFPHLRLYRV 251
GFPHL + +
Sbjct: 338 GFPHLXAFYI 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549592|ref|XP_003543176.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/250 (74%), Positives = 217/250 (86%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT++GK+LVTD +GLSYA YVLQHHQDALM WP+VH+A++DPT EPF + +GEPAY
Sbjct: 95 YSLTDVGKTLVTDEQGLSYAHYVLQHHQDALMRAWPMVHEAVVDPTKEPFERANGEPAYG 154
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YY K PEMN LM +AMSGVSVPF+ ++LEGY+GF+GV++LVDVGGS GDCLRMIL+KH
Sbjct: 155 YYLKHPEMNDLMVRAMSGVSVPFIRAMLEGYDGFQGVEKLVDVGGSGGDCLRMILEKHPT 214
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I EGINFDLPEVVA+AP IP VTH+GGDMFK IP DAIFMKWVLTTWTD+ECK IM+NC
Sbjct: 215 IKEGINFDLPEVVAKAPQIPFVTHVGGDMFKFIPQGDAIFMKWVLTTWTDEECKHIMQNC 274
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
+KALP GGKLIACEPVLP+DS+ES RTRALLEGDIFVMTIYRAKG HRTE++F+QL A
Sbjct: 275 HKALPEGGKLIACEPVLPEDSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDA 334
Query: 242 GFPHLRLYRV 251
GFP R + V
Sbjct: 335 GFPRFRAFHV 344
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231756|ref|NP_190882.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] gi|14194165|gb|AAK56277.1|AF367289_1 AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|6630734|emb|CAB64217.1| caffeic acid O-methyltransferase-like protein [Arabidopsis thaliana] gi|22137206|gb|AAM91448.1| AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|332645520|gb|AEE79041.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/253 (72%), Positives = 217/253 (85%), Gaps = 1/253 (0%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT++GK+LVTD GLSYA YVLQHHQ+ALM WPLVH A+++P EP++K +GE AY+
Sbjct: 99 YSLTDVGKTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYA 158
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YGK EMNGLM+KAMSGVSVPFM ++L+GY+GFK V LVDVGGSAGDCLRMILQ+
Sbjct: 159 QYGKSEEMNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPN 218
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ EGINFDLPEVVA+AP+IPGVTH+GGDMF+S+P+ADAIFMKWVLTTWTD+ECK IM+NC
Sbjct: 219 VREGINFDLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKWVLTTWTDEECKQIMKNC 278
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALP GGKLIACEPVLP +++ES RTRALLEGDIFVMTIYR KG HRTE+EF +LG A
Sbjct: 279 YNALPVGGKLIACEPVLPKETDESHRTRALLEGDIFVMTIYRTKGKHRTEEEFIELGLSA 338
Query: 242 GFPHLRLYRVLDY 254
GFP R + + DY
Sbjct: 339 GFPTFRPFYI-DY 350
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440171|ref|XP_004137858.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] gi|449524758|ref|XP_004169388.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/255 (70%), Positives = 217/255 (85%), Gaps = 3/255 (1%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT++GK+LVTD +GLSYAPYVLQHHQDALM WP VH+A +D T EPF++ +GE AYS
Sbjct: 147 YSLTDVGKTLVTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDSTTEPFVRANGEAAYS 206
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YYGK EMN LM++AM+GVSVPFM +VL+GY+GFKGV++LVDVGGSAGDCLRMILQK+
Sbjct: 207 YYGKKTEMNELMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKYPH 266
Query: 122 ICEGINFDLPEVVAEAPSIP--GVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
I EGINFDLPEVVA AP+IP GV+H+GGDMFKSIP DAIFMKWVL+TWTDDECK+I+E
Sbjct: 267 IKEGINFDLPEVVARAPTIPETGVSHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILE 326
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239
NC K+LP GGKLIACEP LP+ ++ES RTRALL D+F+MTIY+AK RTE++F+QLG
Sbjct: 327 NCCKSLPVGGKLIACEPTLPEKTDESHRTRALLASDVFIMTIYKAKSKQRTEEQFRQLGL 386
Query: 240 FAGFPHLRLYRVLDY 254
AGF LR + + DY
Sbjct: 387 SAGFSALRPFHI-DY 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30313849|gb|AAP03058.1| S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/255 (62%), Positives = 201/255 (78%), Gaps = 3/255 (1%)
Query: 2 YSLTEIGKSLVT-DVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
Y LTE+G++LV+ D S+ YVLQHHQ+ L+ WP +H AILD + EPF +V+GEPAY
Sbjct: 113 YCLTEVGQTLVSFDESCPSHGAYVLQHHQETLLKAWPFLHTAILDASTEPFARVNGEPAY 172
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVL-EGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119
YYGK E+N M+ AMSGVSVP+M ++L GY+GF+GVK LVDVGGS+GDCLRMI+ K+
Sbjct: 173 QYYGKNDELNKNMQYAMSGVSVPYMKALLGSGYDGFEGVKTLVDVGGSSGDCLRMIINKY 232
Query: 120 RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
+ I + INFDLPEVVA+AP IPG+TH+GG+MF+S+P+ DAIF+KWVLT +TD+E +M
Sbjct: 233 KDIPKAINFDLPEVVAKAPKIPGITHVGGNMFESVPSGDAIFVKWVLTCFTDEEVITLMR 292
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239
NC KALP GGKLI EP LP++S+ES RTRALL DIF+MT YRAKG HRTE+E++QLG
Sbjct: 293 NCNKALPVGGKLICSEPTLPENSDESHRTRALLVADIFIMTTYRAKGKHRTEEEYRQLGL 352
Query: 240 FAGFPHLRLYRVLDY 254
AGFP R+ V DY
Sbjct: 353 LAGFPKFRVIHV-DY 366
|
Source: Limonium latifolium Species: Limonium latifolium Genus: Limonium Family: Plumbaginaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464631|ref|XP_003602597.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|355491645|gb|AES72848.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 193/253 (76%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLTE+GK+LV D +GLSY YVLQH+QD + WPLV +A+ DPT+EPF K+HGE AY+
Sbjct: 98 YSLTEVGKALVPDDDGLSYGTYVLQHYQDQYLRAWPLVGEAVEDPTVEPFEKLHGEGAYA 157
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y K P+ L +MSG+S+P M +LE Y+GFKGV+ LVDVGG++G L MI+ K+
Sbjct: 158 YCMKRPDEMSLFYASMSGMSMPHMNEMLEKYDGFKGVESLVDVGGNSGVILNMIMNKYPN 217
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I +GINFDLP++++ AP +PG+TH+GGD + +PA DAIF KW + TWTD+ECK +++NC
Sbjct: 218 ILKGINFDLPDMISSAPQLPGITHVGGDALELVPAGDAIFTKWTMLTWTDEECKKVLQNC 277
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
YKALP GKLI CEPV P+ ++ESQRTRALL GDIF+MT+Y+ KG HRTE++FKQLG A
Sbjct: 278 YKALPVNGKLIVCEPVSPELTDESQRTRALLSGDIFIMTMYKTKGKHRTEEQFKQLGISA 337
Query: 242 GFPHLRLYRVLDY 254
GF R + + Y
Sbjct: 338 GFLRFRAFHIDPY 350
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6688808|emb|CAB65279.1| O-diphenol-O-methyl transferase [Medicago sativa subsp. x varia] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 192/253 (75%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT+IGK+LV D +GLSYA YVLQH+QD + WPLV A+ D ++EPF K+HGE AY+
Sbjct: 98 YSLTDIGKALVPDDDGLSYATYVLQHYQDQYLRAWPLVGDAVEDASVEPFEKLHGEGAYA 157
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y K P+ L +MSG+S+P M +LE Y+GFKGV+ LVDVGG++G L MI+ K+
Sbjct: 158 YCMKRPDEMSLFYASMSGLSMPHMNEMLEKYDGFKGVETLVDVGGNSGVILNMIMNKYPN 217
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I +GINFDLP++++ AP +PG+TH+GGD +S+PA DAIF KW + TWTD+ECK +++NC
Sbjct: 218 ILKGINFDLPDMISSAPQLPGITHVGGDALESVPAGDAIFTKWTMLTWTDEECKKVLQNC 277
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
YKALP GKLI CEPV P+ ++ESQRTRALL GDIF+MT+YR KG HRTE++FKQLG
Sbjct: 278 YKALPVNGKLIVCEPVSPELTDESQRTRALLSGDIFIMTMYRTKGKHRTEEQFKQLGIST 337
Query: 242 GFPHLRLYRVLDY 254
GF R + + Y
Sbjct: 338 GFLRFRAFHIDPY 350
|
Source: Medicago sativa subsp. x varia Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| TAIR|locus:2102038 | 359 | AT3G53140 [Arabidopsis thalian | 0.992 | 0.701 | 0.727 | 2.1e-100 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.964 | 0.674 | 0.407 | 4.7e-48 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.956 | 0.675 | 0.378 | 3.1e-44 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.940 | 0.649 | 0.382 | 6.4e-44 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.984 | 0.688 | 0.386 | 5.7e-43 | |
| UNIPROTKB|P93324 | 372 | P93324 "Isoliquiritigenin 2'-O | 0.937 | 0.639 | 0.383 | 1.5e-42 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.968 | 0.698 | 0.361 | 4e-42 | |
| UNIPROTKB|A8QW52 | 376 | EOMT "Eugenol O-methyltransfer | 0.822 | 0.555 | 0.393 | 1.9e-37 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.944 | 0.629 | 0.355 | 6.3e-37 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.944 | 0.629 | 0.342 | 3.5e-36 |
| TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 184/253 (72%), Positives = 217/253 (85%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
YSLT++GK+LVTD GLSYA YVLQHHQ+ALM WPLVH A+++P EP++K +GE AY+
Sbjct: 99 YSLTDVGKTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYA 158
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
YGK EMNGLM+KAMSGVSVPFM ++L+GY+GFK V LVDVGGSAGDCLRMILQ+
Sbjct: 159 QYGKSEEMNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPN 218
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ EGINFDLPEVVA+AP+IPGVTH+GGDMF+S+P+ADAIFMKWVLTTWTD+ECK IM+NC
Sbjct: 219 VREGINFDLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKWVLTTWTDEECKQIMKNC 278
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALP GGKLIACEPVLP +++ES RTRALLEGDIFVMTIYR KG HRTE+EF +LG A
Sbjct: 279 YNALPVGGKLIACEPVLPKETDESHRTRALLEGDIFVMTIYRTKGKHRTEEEFIELGLSA 338
Query: 242 GFPHLRLYRVLDY 254
GFP R + + DY
Sbjct: 339 GFPTFRPFYI-DY 350
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 101/248 (40%), Positives = 147/248 (59%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S A L + LM W + AILD I PF K +G A+
Sbjct: 103 IYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYGMSAF 161
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + MS S M +LE Y GF+G+ LVDVGG G L+MI+ K+
Sbjct: 162 EYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYP 221
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
+ +GINFDLP V+ +APS PG+ H+GGDMF S+P DAIFMKW+ W+D+ C ++N
Sbjct: 222 NL-KGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKN 280
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY++LP GK+I E +LP+ + S T+ ++ D +M + G RTE+EF+ L
Sbjct: 281 CYESLPEDGKVILAECILPETPDSSLSTKQVVHVDC-IMLAHNPGGKERTEKEFEALAKA 339
Query: 241 AGFPHLRL 248
+GF +++
Sbjct: 340 SGFKGIKV 347
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| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 93/246 (37%), Positives = 140/246 (56%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y + K L + +G+S A L + LM W + A+LD I PF K +G A+
Sbjct: 103 YRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFE 161
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+G P N + + M S+ +LE Y GF+G+ +VDVGG G + I +
Sbjct: 162 YHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPA 221
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I +GINFDLP V++EA PGVTH+GGDMF+ +P+ DAI MKW+L W+D+ C +++NC
Sbjct: 222 I-KGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNC 280
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALPA GK++ E +LP + + + + + D+ +M + G R E+EF+ L A
Sbjct: 281 YDALPAHGKVVLVECILPVNPEATPKAQGVFHVDM-IMLAHNPGGRERYEREFEALAKGA 339
Query: 242 GFPHLR 247
GF ++
Sbjct: 340 GFKAIK 345
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| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 93/243 (38%), Positives = 137/243 (56%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+ + K L + +G+S A L + LM W + A+LD I PF K +G A+
Sbjct: 110 YAAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFE 168
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+G N + + M SV +L+ Y GF +VDVGG G + ++ +H
Sbjct: 169 YHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPH 228
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMEN 180
I GIN+DLP V++EAP PGV H+GGDMF S+P DAI MKW+L W+D+ C +++N
Sbjct: 229 I-RGINYDLPHVISEAPPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKN 287
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY ALP GK++ E VLP+ S+ + R + + D+ +M + G R E+EF++L
Sbjct: 288 CYDALPEHGKVVVVECVLPESSDATAREQGVFHVDM-IMLAHNPGGKERYEREFRELARA 346
Query: 241 AGF 243
AGF
Sbjct: 347 AGF 349
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| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 99/256 (38%), Positives = 146/256 (57%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y L ++GK L+ D +G S APYVL A +W + +AI + + + + +
Sbjct: 103 YGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALIFE 162
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y K + + ++M+ + M +LE Y GF+GV VDVGGS G L IL K+
Sbjct: 163 YMKKNENLKKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPH 222
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I +GINFDLP +V EAP I GV HIGGDMF IP + I MKW+L W D++C I++NC
Sbjct: 223 I-KGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNC 281
Query: 182 YKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
KALP G++I E ++P + +E+ T+ L D+ +M++ + G RT++EF+ L
Sbjct: 282 KKALPETGRIIVIEMIVPREVSETDLATKNSLSADLTMMSL-TSGGKERTKKEFEDLAKE 340
Query: 241 AGF--PHLRLYRVLDY 254
AGF P + +Y Y
Sbjct: 341 AGFKLPKI-IYGAYSY 355
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| UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 94/245 (38%), Positives = 146/245 (59%)
Query: 1 MYSLTEIGKSLVTDVEGLSY-APYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPA 59
+Y L+ +GK LV D E Y A + AL+ +W +A++D I+ F VHG
Sbjct: 113 VYGLSMVGKYLVPD-ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTK 171
Query: 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119
Y + GK +MN + K+M V M +LE Y GF+G+ LVDVGG +G L +I+ K+
Sbjct: 172 YEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY 231
Query: 120 RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
I +GINFDLP+V+ AP + G+ H+GGDMF S+P DA+ +K V W+D++C +
Sbjct: 232 PLI-KGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 290
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGD-IFVMTIYRAKGNHRTEQEFKQLG 238
NC+KAL GK+I E +LP++ N S+ ++ + D + +T+ G RTE+++++L
Sbjct: 291 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV---GGRERTEKQYEKLS 347
Query: 239 FFAGF 243
+GF
Sbjct: 348 KLSGF 352
|
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| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 90/249 (36%), Positives = 138/249 (55%)
Query: 1 MYSLTEIGKSLVTDVEGL-SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPA 59
+Y L + K + G S AP V + MW + ++L+ + PF HG A
Sbjct: 90 IYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTDMWYNLKDSVLEGGL-PFNNTHGSSA 148
Query: 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119
G + + +M G + F+ L+ YNGF GVK LVDVGG G L I+ KH
Sbjct: 149 VELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISKH 208
Query: 120 RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
I + INFDLP V+ + PG+ H+ GDMF + P +AIFMKW+L +W DD C I+
Sbjct: 209 THIIKAINFDLPTVINTSLPSPGIEHVAGDMFTNTPKGEAIFMKWMLHSWDDDHCVKILS 268
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239
NCY++LP+ GK+I + V+P+ ++ R+L + ++F+M + G RT++EF+ L
Sbjct: 269 NCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFELFMMNM-NPSGKERTKKEFEILAR 327
Query: 240 FAGFPHLRL 248
AGF ++++
Sbjct: 328 LAGFSNVQV 336
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| UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 83/211 (39%), Positives = 119/211 (56%)
Query: 33 MSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGY 92
M W + +L PF K +G P + Y G MN L +AM+ S+ +LE +
Sbjct: 148 METWHNIKDGVLAGET-PFDKAYGMPVFEYLGANGTMNTLFNEAMASHSMIITKRLLEVF 206
Query: 93 NGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 152
GF+ LVDVGG G ++MI ++ I GIN+DLP V+A+A I GV H+ G+MF
Sbjct: 207 RGFENYSVLVDVGGGNGTTMQMIRSQYENI-SGINYDLPHVIAQASPIEGVEHVAGNMFD 265
Query: 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL 212
+IP DAI +KW+L W D EC I++NCY ALP G +I E +LP+ E+ ++
Sbjct: 266 NIPRGDAIILKWILHNWGDKECVKILKNCYTALPVNGTVIILEYILPETPEETLASQLAF 325
Query: 213 EGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243
+ D+ +M + A G RTE+E +L AGF
Sbjct: 326 DFDLGMMLFFGASGKERTEKELLELAREAGF 356
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| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 87/245 (35%), Positives = 133/245 (54%)
Query: 1 MYSLTEIGKSLVTDVEGL-SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPA 59
+Y+ I K + D +G S + +L H ++ W + IL+ + F H
Sbjct: 121 VYAAEPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGK-DAFSSAHDMRL 179
Query: 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119
+ Y + + L +AMS S M VLE Y GF+ V LVDVGG G L +I K+
Sbjct: 180 FEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKY 239
Query: 120 RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
I +G+NFDL +V+ +AP PGV H+ GDMF +P DAIFMKW+L W D++C I++
Sbjct: 240 PHI-KGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILK 298
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQRT-RALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238
NC+K+LP GK+I E + P + + + +L D+ ++T + G R+ +F+ L
Sbjct: 299 NCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVLGMDLLMLT-QCSGGKERSLSQFENLA 357
Query: 239 FFAGF 243
F +GF
Sbjct: 358 FASGF 362
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| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 84/245 (34%), Positives = 127/245 (51%)
Query: 1 MYSLTEIGKSLVTDVEGL-SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPA 59
+Y+ + K + D +G S P + H W + IL+ + F HG
Sbjct: 121 VYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTNLKDVILEGR-DAFNSAHGMKI 179
Query: 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119
+ Y L +AMS S M VL+ Y GF+ V LVDVGG G L ++ K+
Sbjct: 180 FEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKY 239
Query: 120 RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179
I +G+NFDL +V+ +AP PGV H+ GDMF +P DA+FMKW+L W D++C I++
Sbjct: 240 PHI-KGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILK 298
Query: 180 NCYKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238
NC+K+LP GK+I E V P + + + D+ ++T + G R+ +F+ L
Sbjct: 299 NCWKSLPEKGKIIIVEFVTPKEPKGGDLSSNTVFAMDLLMLT-QCSGGKERSLSQFENLA 357
Query: 239 FFAGF 243
F +GF
Sbjct: 358 FASGF 362
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | COMTL4 | beta-alanine n-methyltransferase related (364 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 254 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-76 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 8e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 1e-76
Identities = 92/236 (38%), Positives = 134/236 (56%), Gaps = 5/236 (2%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y LT K LV + S AP +L + L+ W + A+ + PF + G P +
Sbjct: 7 YGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFGMPFFE 65
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y G PE N + +AM+ S M +LE F G+ LVDVGG G I++ +
Sbjct: 66 YLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPH 125
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+GI FDLP V+A+APS V +GGD F+S+P ADAI +KWVL W+D++C I++ C
Sbjct: 126 -IKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKRC 184
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237
Y+ALP GGK+I E VLP+D ++ T LL D+ ++ + G RTE+E+++L
Sbjct: 185 YEALPPGGKVIVVEMVLPEDPDDDLETEVLL-LDLNMLVL--NGGKERTEKEWRKL 237
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-05
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 70 NGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQ-----KHRFICE 124
+ L + + + F +L GVK+++DVGG GD +L+ +
Sbjct: 122 DNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL 181
Query: 125 GINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDECKLIMENCY 182
DL E AE + I D++K P ADA+ +L + + ++ + +
Sbjct: 182 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAF 241
Query: 183 KALPAGGKLIACEPVLPD 200
A+ +GG+L+ + V+ D
Sbjct: 242 DAMRSGGRLLILDMVIDD 259
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Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA------PSIPGVTHIGGDMF 151
R++D+G G + + DL PE++ A P +T + GD
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGDAP 61
Query: 152 KS---IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196
+ + DA+F+ + +++ L GG+L+
Sbjct: 62 DALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVLNAV 104
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Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.97 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.82 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.79 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.78 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.75 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.7 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.69 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.69 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.68 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.67 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.67 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.67 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.65 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.65 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.65 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.62 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.62 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.59 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.59 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.59 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.59 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.58 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.58 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.57 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.56 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.56 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.55 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.55 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.53 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.53 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.48 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.48 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.47 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.46 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.44 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.44 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.43 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.43 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.42 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.42 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.41 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.4 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.39 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.38 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.38 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.38 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.37 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.35 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.35 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.34 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.34 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.29 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.28 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.27 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.26 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.25 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.23 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.22 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.21 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.2 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.2 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.2 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.18 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.18 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.17 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.16 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.16 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.16 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.15 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.14 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.13 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.13 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.13 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.13 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.11 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.1 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.09 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.08 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.07 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.06 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.05 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.04 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.04 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.02 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.01 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.0 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.99 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.97 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.96 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.96 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.96 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.95 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.9 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.89 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.88 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.88 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.87 | |
| PLN02366 | 308 | spermidine synthase | 98.87 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.87 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.85 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.85 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.85 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.85 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.8 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.79 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.77 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.75 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.75 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.73 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.73 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.71 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.66 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.66 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.62 | |
| PLN02476 | 278 | O-methyltransferase | 98.57 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.57 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.55 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.48 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.47 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.47 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.46 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.44 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.44 | |
| PLN02823 | 336 | spermine synthase | 98.44 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.41 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.41 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.38 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.38 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.38 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.36 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.35 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.34 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.33 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.33 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.32 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.3 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.27 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.26 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.24 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.21 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.18 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.15 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.15 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.13 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.03 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.01 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.01 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.01 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.0 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.99 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.97 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.97 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.96 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.93 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.91 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.87 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.87 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.86 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.85 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.82 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.81 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.77 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.75 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.72 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.59 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.59 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.56 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.54 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.52 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.5 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.49 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.48 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.47 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.43 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.42 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.41 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.4 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.39 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.37 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.37 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.27 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.23 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.21 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.19 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.17 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.17 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.15 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.14 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.11 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.05 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.04 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.03 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.01 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.96 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.9 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.89 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.84 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.8 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.8 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.77 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.54 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.53 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.52 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.51 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.49 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.44 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.43 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.41 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.39 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.28 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.0 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.89 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.77 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.74 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.58 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.47 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.44 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.37 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.35 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.34 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.33 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.18 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.09 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.04 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.61 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.5 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.2 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.17 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.82 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.81 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.74 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.44 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.75 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 92.7 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 92.68 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.38 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.17 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.01 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 90.28 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 89.58 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 88.79 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.73 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.65 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.28 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 87.99 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 87.56 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 86.86 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 86.79 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 85.95 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 85.67 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 85.43 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.28 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 84.77 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 84.67 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 84.35 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 84.34 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 84.25 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 84.07 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 83.66 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 83.48 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 83.13 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 81.95 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 81.46 | |
| PHA01634 | 156 | hypothetical protein | 81.19 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 80.12 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=297.22 Aligned_cols=234 Identities=31% Similarity=0.506 Sum_probs=204.9
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||++|+.|+.++++.++..++.++.++..+++|.+|.+++++|. ++++.++|.++|+++.++|+..+.|+.+|...
T Consensus 5 ~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 83 (241)
T PF00891_consen 5 RYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEY 83 (241)
T ss_dssp EEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhh
Confidence 49999999988888766788888888788899999999999999998 89999999999999999999999999999998
Q ss_pred CchhH-HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccE
Q 025363 81 SVPFM-TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADA 159 (254)
Q Consensus 81 ~~~~~-~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~ 159 (254)
++... +.+...++ |++..+|||||||+|.++..+++++|+++ ++++|+|++++.+++.+||+++.|||++++|.+|+
T Consensus 84 ~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 84 SRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 88777 78889996 99999999999999999999999999999 99999999999888889999999999977888999
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCC--CEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAG--GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pg--G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+++++||+|+|+++.+||++++++|+|| |+|+|.|.+.++....+........+|+.|+. ..+|++||.+||++|
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~~l 239 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWEAL 239 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHHHH
Confidence 99999999999999999999999999999 99999999999876554433222478999997 566999999999999
Q ss_pred HH
Q 025363 238 GF 239 (254)
Q Consensus 238 l~ 239 (254)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=258.37 Aligned_cols=249 Identities=40% Similarity=0.666 Sum_probs=223.3
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
.|++||++++++.+.+..|+.++++..+++..+..|..|.++++.|. .++..++|+.+++|.+.++.....++++|...
T Consensus 82 ~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l 160 (342)
T KOG3178|consen 82 VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFL 160 (342)
T ss_pred eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence 39999999888876666899999999888999999999999999998 78999999889999999999999999999998
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-CCcEEEeCCCCCCCCCccE
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-PGVTHIGGDMFKSIPAADA 159 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-~~i~~~~~d~~~~~p~~D~ 159 (254)
+......+++.+.+|+.....+|||||.|..+..++..+|+++ ++.+|+|.+++.++.. +.|+.+.+|+|++.|.+|+
T Consensus 161 ~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 161 STLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 8888888888887788889999999999999999999999999 9999999999999887 8899999999999999999
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC-CCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD-DSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
|++.++||||+|++|+++|++|++.|+|||++++.|.+.++ .............+|+.|+. ...+|++|+..|+..++
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~ 318 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALL 318 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcc
Confidence 99999999999999999999999999999999999998886 22222223445678888888 55669999999999999
Q ss_pred HhCCCCeeeEEEcc
Q 025363 239 FFAGFPHLRLYRVL 252 (254)
Q Consensus 239 ~~aGf~~~~~~~~~ 252 (254)
.++||.+..+...+
T Consensus 319 ~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 319 PEEGFPVCMVALTA 332 (342)
T ss_pred hhhcCceeEEEecc
Confidence 99999988876543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=214.99 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=162.6
Q ss_pred CcccChhchhcccCCCCC---ChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHH
Q 025363 1 MYSLTEIGKSLVTDVEGL---SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAM 77 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 77 (254)
+|+||+.|+.++.+.++. ++.+++.+. .......|.+|.++++++ +++...++ +-...++. ..|...|
T Consensus 59 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~-~~~~~~~ 129 (306)
T TIGR02716 59 KWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTRED-NLYFEEI 129 (306)
T ss_pred cEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHH-HHhHHHH
Confidence 599999997666654432 122343332 122335789999999854 33332211 11112222 2344444
Q ss_pred h-cCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCC
Q 025363 78 S-GVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGD 149 (254)
Q Consensus 78 ~-~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d 149 (254)
. .......+.+++..+ +++..+|||||||+|.++..+++++|+++ ++++|+|++++.++++ +||+++.+|
T Consensus 130 ~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d 207 (306)
T TIGR02716 130 HRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVD 207 (306)
T ss_pred HHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecC
Confidence 4 333445566778885 88889999999999999999999999999 9999999888776542 689999999
Q ss_pred CCCC-CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc-cchHhhhhccccCce
Q 025363 150 MFKS-IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYRAKGN 227 (254)
Q Consensus 150 ~~~~-~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (254)
+++. +|.+|+|++.+++|+|+++.+.++|++++++|+|||+|+|.|.+.++... +....... ...+.+.. .. ..
T Consensus 208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~ 283 (306)
T TIGR02716 208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF--SV-LG 283 (306)
T ss_pred ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc--cc-cc
Confidence 9975 67679999999999999999999999999999999999999998765432 21111111 11111111 11 12
Q ss_pred ecCHHHHHHHHHhCCCCeeeEE
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
.++.++|.++|+++||+.+++.
T Consensus 284 ~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 284 FKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCCHHHHHHHHHHcCCCeeEec
Confidence 2457999999999999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=141.96 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=119.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~ 157 (254)
+.++... ...++.+|||||||||..+..+++..+..+ ++++|. +.|++.++++ ..|+|+.+|+.+- +|+.
T Consensus 41 ~~~i~~~-~~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLL-GIKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhh-CCCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 3444444 244789999999999999999999999888 999999 9999998875 2399999999986 7774
Q ss_pred --cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh-hhh--ccccC--c----
Q 025363 158 --DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF-VMT--IYRAK--G---- 226 (254)
Q Consensus 158 --D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~--~---- 226 (254)
|+|.+++.|++++| ..++|++++|+|||||++++.|...+..+. .......+... .+- ..... .
T Consensus 119 sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~ 193 (238)
T COG2226 119 SFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYE 193 (238)
T ss_pred ccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHHHH
Confidence 99999999999975 469999999999999999999998875532 11111111111 110 00110 1
Q ss_pred -------eecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 227 -------NHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 227 -------~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+..+.+++.++++++||+.+.....
T Consensus 194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 194 YLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 1237899999999999998875543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=145.23 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=118.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+++.+ ...++.+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.+++. +++.++.+|+.+. +|.
T Consensus 41 ~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 45667777 47889999999999999999998775 567 999999 8887776643 5799999999865 554
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|++..+++|++.++...+|++++++|||||+|++.|........ +.... .. ... ...-...+.+++.+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~---~~--~~~--~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEF---KA--YIK--KRKYTLIPIQEYGD 188 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHH---HH--HHH--hcCCCCCCHHHHHH
Confidence 39999999988888777889999999999999999999986654311 11000 00 000 00112358899999
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
+|+++||+.++..++.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=139.66 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=112.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCC-c-cEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA-A-DAI 160 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~-~-D~v 160 (254)
..++.+|||||||+|.++..+++++ |+.+ ++++|+ ++|++.++++ ++++++.+|+.+. +++ . |+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 5678899999999999999999875 5668 999999 9999877532 4799999998774 554 3 999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH--hhhhcccc-----------Cce
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI--FVMTIYRA-----------KGN 227 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~ 227 (254)
++..++|++++ ..++|++++++|||||++++.|...++..-...... ..+.. ........ -..
T Consensus 150 ~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 150 TMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE--WMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHH--HHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999864 468999999999999999999987654311111000 00000 00000000 012
Q ss_pred ecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
..+.+++.++++++||+.++...+.|
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISG 251 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCC
Confidence 35899999999999999998877654
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=142.05 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=111.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~D~v~~~~ 164 (254)
.++.+|||||||+|..+..+++++ |+.+ ++++|+ +.|++.+++. .+++++.+|+.+. ++..|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 467799999999999999999974 6888 999999 9998887643 4789999999876 55569999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc----------------cccCcee
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----------------YRAKGNH 228 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 228 (254)
++|++++++...++++++++|+|||.+++.|....+....... ...+..... ....-..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 9999998888999999999999999999999876544221110 001000000 0001123
Q ss_pred cCHHHHHHHHHhCCCCeee
Q 025363 229 RTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 229 ~t~~e~~~ll~~aGf~~~~ 247 (254)
.|.+++.++++++||+.++
T Consensus 206 ~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 206 DSIETHKARLKNVGFSHVE 224 (239)
T ss_pred CCHHHHHHHHHHcCCchHH
Confidence 5899999999999998655
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=146.15 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~- 157 (254)
+++.. ...++.+|||+|||||..+..++++. |+.+ ++++|+ ++|++.++++ .+|+++.+|+.+. +++.
T Consensus 39 ~~~~~-~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 39 LIKLL-GLRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHHH-T--S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred HHhcc-CCCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 44444 35668899999999999999999885 5678 999999 9999988753 5899999999875 6654
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc-cch-HhhhhccccCc--------
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL-EGD-IFVMTIYRAKG-------- 226 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-------- 226 (254)
|+|++.+.+|+++|. .+.|++++|+|||||+++|+|...+..+ ....... .+. +....-....+
T Consensus 117 fD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL 191 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYL 191 (233)
T ss_dssp EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-----------------------
T ss_pred eeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccc
Confidence 999999999999764 5799999999999999999999887542 1111000 000 00000000001
Q ss_pred -----eecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 227 -----NHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 227 -----~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...+.+++.++++++||+.++..++.
T Consensus 192 ~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 192 PESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 11368899999999999988876654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=140.72 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHH--cCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~--~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~D~v~~~~ 164 (254)
.++.+|||||||+|..+..+++. .|+.+ ++++|. +.|++.++++ .+++++.+|+.+. .+..|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 46789999999999999999884 57889 999999 9999888653 4799999998765 44569999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-ChhhhhhcccchHhhhh------c-c----ccC-ceecCH
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMT------I-Y----RAK-GNHRTE 231 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~------~-~----~~~-~~~~t~ 231 (254)
++|++++++...++++++++|||||.|++.|....+... .+.... ...+..... + . ..+ -...|.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFN--MHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 999998888889999999999999999999976654422 111000 000100000 0 0 000 112488
Q ss_pred HHHHHHHHhCCCCeee
Q 025363 232 QEFKQLGFFAGFPHLR 247 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~ 247 (254)
++..++|+++||+.++
T Consensus 212 ~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 212 ETHKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHHcCchhHH
Confidence 9999999999998654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=135.79 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=111.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC--ccEEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIF 161 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~--~D~v~ 161 (254)
...+++.++ ..++.+|||||||+|.++..+++++|+.+ ++++|+ +.|++.+++ .+++++.+|+.+..+. .|+|+
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 456777774 67789999999999999999999999888 999999 999988876 4799999998765333 39999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc--ccchHhhhhc-cccCceecCHHHHHHHH
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTI-YRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~t~~e~~~ll 238 (254)
+..++|++++. .+++++++++|||||++++.................. ..+....... ........+.+++.++|
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 99999998654 6899999999999999998643211110000000000 0000000000 00112335899999999
Q ss_pred HhCCCCeeeE
Q 025363 239 FFAGFPHLRL 248 (254)
Q Consensus 239 ~~aGf~~~~~ 248 (254)
+++||++...
T Consensus 173 ~~aGf~v~~~ 182 (255)
T PRK14103 173 TDAGCKVDAW 182 (255)
T ss_pred HhCCCeEEEE
Confidence 9999985543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=139.15 Aligned_cols=148 Identities=26% Similarity=0.312 Sum_probs=112.9
Q ss_pred HHhhcCCC-CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC--ccE
Q 025363 88 VLEGYNGF-KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA--ADA 159 (254)
Q Consensus 88 i~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~--~D~ 159 (254)
+++... + .++.+|||||||+|..+..+++..+..+ ++++|. +++++.+++. .+++++.+|+.+. ++. .|+
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence 444442 3 4568999999999999999999888778 999999 8888887654 5789999999775 444 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
|++..++|++++. ..+|++++++|||||++++.+...+.. +..+. ..+..+ ...+.+|+.++++
T Consensus 182 VIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r~--~~~~~~--------~~~t~eEl~~lL~ 245 (340)
T PLN02490 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSRF--FADVWM--------LFPKEEEYIEWFT 245 (340)
T ss_pred EEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHHH--hhhhhc--------cCCCHHHHHHHHH
Confidence 9999999999765 478999999999999999887654321 11110 111111 1257899999999
Q ss_pred hCCCCeeeEEEccC
Q 025363 240 FAGFPHLRLYRVLD 253 (254)
Q Consensus 240 ~aGf~~~~~~~~~~ 253 (254)
++||+.+++.++.+
T Consensus 246 ~aGF~~V~i~~i~~ 259 (340)
T PLN02490 246 KAGFKDVKLKRIGP 259 (340)
T ss_pred HCCCeEEEEEEcCh
Confidence 99999999887654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=138.86 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=113.0
Q ss_pred HHHHHhhcCCC-----CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCC
Q 025363 85 MTSVLEGYNGF-----KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMF 151 (254)
Q Consensus 85 ~~~i~~~~~~~-----~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~ 151 (254)
.+.+++... . .++.+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++|+.+|+.
T Consensus 102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 444555552 3 567899999999999999999987 667 999999 8887765532 57999999998
Q ss_pred CC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCc
Q 025363 152 KS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKG 226 (254)
Q Consensus 152 ~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (254)
+. ++.. |+|++..++||+++. .+++++++++|||||+|++.+.......... ........+.-.... ....
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p 254 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLP 254 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCC
Confidence 75 5543 999999999999754 6899999999999999999886543221100 000000011110000 0001
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...+.++|.++++++||..+++.+..
T Consensus 255 ~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 255 AWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 22478999999999999999887653
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-17 Score=127.87 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=114.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC------CCeEEEeec-hHHHhhCCCC---------CCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVAEAPSI---------PGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~------~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~ 148 (254)
-+-.+..+. ..++.++||++||||..+..+++..+. .+ +++.|+ |+|++.++++ .++.++++
T Consensus 89 Kd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 89 KDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 344455553 556799999999999999999999776 56 999999 9999987653 45999999
Q ss_pred CCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc--cchHhh-hhcc
Q 025363 149 DMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL--EGDIFV-MTIY 222 (254)
Q Consensus 149 d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 222 (254)
|+.+- +|+. |.|.+...+.+|++. .+.|++++|+|||||++.+.|+.--+. ++..+... .++... +..+
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~fy~~ysf~VlpvlG~~ 241 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWFYDQYSFDVLPVLGEI 241 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHHHHhhhhhhhchhhHh
Confidence 99886 7764 999999999999765 689999999999999999999865442 11111111 111110 0000
Q ss_pred ccC------------ceecCHHHHHHHHHhCCCCeee
Q 025363 223 RAK------------GNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 223 ~~~------------~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
..+ -+..+.+++..+.++|||+.+.
T Consensus 242 iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 242 IAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 001 0123789999999999999875
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=131.13 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=113.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
+.+++.++ ..++.+|||+|||+|.++..+++.+ |..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 44555563 6778899999999999999999986 5678 999999 8888766542 5789999999775 444
Q ss_pred -c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccch----H------------hh
Q 025363 157 -A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGD----I------------FV 218 (254)
Q Consensus 157 -~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~----~------------~~ 218 (254)
. |+|++..++|++++. .++|+++.++|+|||++++.+...+... .........+. . ..
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 3 999999999988654 5899999999999999999887544321 11000000000 0 00
Q ss_pred hhccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 219 MTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 219 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
+. .......+.+++.++++++||+.+++..+.
T Consensus 189 ~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 189 LQ--ESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HH--HHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 00 000123478999999999999999988776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=139.71 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=115.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~- 156 (254)
.+.+++.+. ..++.+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.++++ .+++|+.+|+.+. +|.
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 344666664 6778899999999999999998876 668 999999 8888776543 4799999999876 554
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
.|+|++..+++|+++ ...++++++++|||||+|++.+............. .. .. ..+....+.+++.
T Consensus 332 ~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~--~~--~~g~~~~~~~~~~ 399 (475)
T PLN02336 332 SFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA------EY--IK--QRGYDLHDVQAYG 399 (475)
T ss_pred CEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH------HH--HH--hcCCCCCCHHHHH
Confidence 399999999999865 46899999999999999999987654322111110 01 00 1223456899999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
++++++||+++.+...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999877653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=114.87 Aligned_cols=98 Identities=21% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCC-CCC-CC-CccEEEecc-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDM-FKS-IP-AADAIFMKW- 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~-~~~-~p-~~D~v~~~~- 164 (254)
|+.+|||||||+|.++..+++.+|+.+ ++++|. |++++.++++ ++|+++.+|+ ... .+ ..|+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 467999999999999999999999999 999999 8888877643 7999999999 333 33 359999999
Q ss_pred ccccCCH-HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTD-DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.++++.. ++..++++++++.|+|||+|+|.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6664433 678899999999999999999864
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=126.28 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=105.2
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC-ccEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA-ADAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~ 168 (254)
.+|||||||+|..+..+++.+|+.+ ++++|+ +++++.++++ ++++++..|+.+. .++ .|+|++..++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 3799999999999999999998888 999999 7777766542 5789999999765 444 499999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
+++ ...+|++++++|||||++++.+...+.... .. .. .......+..+|.++++++||++++.
T Consensus 80 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~------~~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IKD--KMDLFSNISRHLKDGGHLVLADFIANLLSA--IE------HE-------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCC--HHHHHHHHHHHcCCCCEEEEEEcccccCcc--cc------cc-------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 865 468999999999999999999875432100 00 00 00111357899999999999999988
Q ss_pred EEc
Q 025363 249 YRV 251 (254)
Q Consensus 249 ~~~ 251 (254)
..+
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 765
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.4e-16 Score=120.86 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=104.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
.+.+++.++ ..+..+|||+|||+|..+..++++ +.+ ++++|+ +.+++.+++. .++++...|+.+. ++.
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 445666664 556789999999999999999987 456 999999 8888766542 4588888998765 444
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
. |+|++..++|++++++...++++++++|+|||++++.+....+....+ . .. ...++.+|+.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~~---------~~~~~~~el~ 157 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--GF---------PFAFKEGELR 157 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--CC---------CCccCHHHHH
Confidence 4 999999999998888889999999999999999877665443321100 0 00 0124778888
Q ss_pred HHHHhCCCCeeeE
Q 025363 236 QLGFFAGFPHLRL 248 (254)
Q Consensus 236 ~ll~~aGf~~~~~ 248 (254)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8886 8887665
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-16 Score=130.25 Aligned_cols=150 Identities=18% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-------CCCCcEEEeCCCCCC-CCCc-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-------~~~~i~~~~~d~~~~-~p~~- 157 (254)
+...++ .-.+.+|||||||+|.++..+++..+. . ++++|. +.++...+ ...+|.++.+|+.+. .+..
T Consensus 114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444553 335689999999999999999998654 6 899998 65554321 125799999998664 3333
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
|+|++..++||..+ ...+|++++++|+|||.+++.+...+...... +..... . +.. .--.+|.+++.
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~---~--~~~----~~~lps~~~l~ 259 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA---K--MRN----VYFIPSVPALK 259 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh---c--Ccc----ceeCCCHHHHH
Confidence 99999999999854 46899999999999999998766555432210 000000 0 000 00124889999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
++++++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999988754
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=132.50 Aligned_cols=144 Identities=11% Similarity=-0.030 Sum_probs=103.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC--ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA--ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~--~D~v~~~~v 165 (254)
++.+|||||||+|.++..+++. +.+ ++++|. +++++.++.. .+|+++.+|+.+. .+. .|+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4569999999999999988864 567 999999 8888877642 3789999998653 333 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHHHHHHHHh
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQEFKQLGFF 240 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~ 240 (254)
|||+++. ..+|++++++|||||.+++.+...... ...........+... ... .+.++.+|+.+++++
T Consensus 208 LeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~---lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 208 IEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRW---LPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhc---CCCCCcCccCCCCHHHHHHHHHH
Confidence 9999765 589999999999999999987543210 000000000000000 111 234689999999999
Q ss_pred CCCCeeeEEEc
Q 025363 241 AGFPHLRLYRV 251 (254)
Q Consensus 241 aGf~~~~~~~~ 251 (254)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999888655
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=117.41 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=96.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC--ccEEEeccccccCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 170 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~--~D~v~~~~vlh~~~ 170 (254)
..+..+|||||||+|.++..+.+... + ++++|+ +.+++. ..+.+...+.... .+. .|+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 46788999999999999999966633 7 999999 888877 2233332222222 222 39999999999997
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+ ...+|+++++.|||||++++.++..... .......+ ..... .......++.++|.++++++||++++
T Consensus 93 d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 D--PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 6799999999999999999999875321 00000000 00000 01224567999999999999999875
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=126.05 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=109.0
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC-c-cEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-A-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~-~-D~v~~ 162 (254)
...++.+|||||||+|..+..+++.. +..+ ++++|+ +.+++.+++. +++++..+|+.+. +++ . |+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 35678999999999999888877764 4567 999999 8898887653 5889999998764 444 3 99999
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
..++|++++. .+++++++++|||||+|++.+........ .. ...+..+.. ...+...+..++.++++++|
T Consensus 153 ~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~-----~~~~~~~~~--~~~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 153 NCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELP-EE-----IRNDAELYA--GCVAGALQEEEYLAMLAEAG 222 (272)
T ss_pred cCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCC-HH-----HHHhHHHHh--ccccCCCCHHHHHHHHHHCC
Confidence 9999987654 57999999999999999999887543211 11 011111121 11234568899999999999
Q ss_pred CCeeeEEE
Q 025363 243 FPHLRLYR 250 (254)
Q Consensus 243 f~~~~~~~ 250 (254)
|..+++..
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 99887644
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=128.57 Aligned_cols=151 Identities=16% Similarity=0.060 Sum_probs=105.3
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-------CCCCcEEEeCCCCCCC-CC-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKSI-PA- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-------~~~~i~~~~~d~~~~~-p~- 156 (254)
.++..+. ..++.+|||||||+|.++..++...+. . ++++|. +.++..++ ...++.+..+++.+.. ..
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3455543 455789999999999999999887653 6 899998 66654321 1257888888875542 22
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCceecCHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
.|+|++..++||+.+ ...+|++++++|||||.|++.+.......... +..+. ..|.. . -...+.+++
T Consensus 189 FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-----~k~~n--v--~flpS~~~L 257 (314)
T TIGR00452 189 FDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-----AKMKN--V--YFIPSVSAL 257 (314)
T ss_pred cCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-----Hhccc--c--ccCCCHHHH
Confidence 399999999999854 46899999999999999999877654332110 00000 00100 0 012488999
Q ss_pred HHHHHhCCCCeeeEEEc
Q 025363 235 KQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 235 ~~ll~~aGf~~~~~~~~ 251 (254)
.++++++||+.+++...
T Consensus 258 ~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 258 KNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHHCCCeEEEEEec
Confidence 99999999999987754
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=126.51 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=110.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
..+.+++.++ .+++.+|||||||-|.++..+++++ +++ ++++.+ ++..+.+++. +++++...|+.+..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 3566788884 9999999999999999999999998 778 999998 6666554321 679999999865434
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
..|.|++-.++.|+..+....+++++.+.|||||++++.......... ........++..-. ..++|.-.+.+++.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~---~~~~~~~~~~i~ky-iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY---HAERRSSSDFIRKY-IFPGGYLPSLSEIL 202 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH---HHCTTCCCHHHHHH-TSTTS---BHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccc---hhhcCCCceEEEEe-eCCCCCCCCHHHHH
Confidence 459999999999998888899999999999999999998887764311 11000011222111 24677778899999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
..++++||++.++..+
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999999888765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=121.47 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=113.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
..++..+. ..++.+|||+|||+|.++..+++.+| ..+ ++++|. +.+++.+++. .++.+..+|+.+. .+
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34555553 45678999999999999999999987 678 999999 7777766543 4689999999875 33
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh---ccccC-----
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT---IYRAK----- 225 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 225 (254)
. .|+|++.+++|++++ ...+|+++.++|+|||++++.+...+.... ... ........++. ....+
T Consensus 119 ~~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKK-AYDFYLFKVLPLIGKLISKNAEAY 193 (239)
T ss_pred CCCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHH-HHHHHHHhhhHHHHHHHcCCcHHH
Confidence 2 399999999998864 568999999999999999999887653311 000 00000000000 00000
Q ss_pred -------ceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 226 -------GNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 226 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...++.++|.++++++||+.+++.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 194 SYLAESIRAFPDQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeee
Confidence 123478899999999999999988754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=121.38 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=91.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCC-C-ccE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP-A-ADA 159 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p-~-~D~ 159 (254)
....++..++ ..++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. +++.++.+|+.+..+ . .|+
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 3566777774 77789999999999999999999999888 999999 8899888765 679999999876533 2 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++..++|++++. ..++++++++|||||++++.
T Consensus 97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 9999999988653 68999999999999999885
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=120.53 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=113.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
..+++... ..++.+|||+|||+|..+..+++.+|. .+ ++++|+ +.+++.+++. .++++..+|+.+. .+.
T Consensus 29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34455553 457889999999999999999999986 67 999998 7777666543 4789999999875 333
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc---c---ccC-----
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI---Y---RAK----- 225 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~----- 225 (254)
.|+|++..++|+.++ ...+++++++.|+|||++++.+...+.... ..... ..+...++.. . ..+
T Consensus 107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFY-KFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHH-HHHHHHhhhhhhhhhcCCchhhHHH
Confidence 399999999998754 578999999999999999998876543211 00000 0000000000 0 000
Q ss_pred ----ceecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 226 ----GNHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 226 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
....+.++|..+|+++||+.+++.++.+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeec
Confidence 1124788999999999999999888765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=137.12 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=109.7
Q ss_pred CCcccccccCchHHHHHHHHHhcCCch--hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH
Q 025363 57 EPAYSYYGKIPEMNGLMRKAMSGVSVP--FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV 133 (254)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~ 133 (254)
..+|+++...++..++|...|...... ..+.....++ +.++.+|||||||+|..+..+++.+|+.+ ++++|+ +.|
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence 456888888888778777655442221 1222233443 66788999999999999999999999999 999999 888
Q ss_pred HhhCCCC-----CCcEEEeCCCCCC---CCC--ccEEEeccccccC-----------CHHHHHHHHHHHHHhCCCCCEEE
Q 025363 134 VAEAPSI-----PGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW-----------TDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 134 ~~~~~~~-----~~i~~~~~d~~~~---~p~--~D~v~~~~vlh~~-----------~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
++.+++. .+++++.+|+.+. ++. .|+|+++.++|+| ++++..++|++++++|||||+++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 8877643 4678888998653 333 3999999999976 34678899999999999999999
Q ss_pred EEccccCCC
Q 025363 193 ACEPVLPDD 201 (254)
Q Consensus 193 i~d~~~~~~ 201 (254)
+.|...++.
T Consensus 535 I~D~v~~E~ 543 (677)
T PRK06922 535 IRDGIMTED 543 (677)
T ss_pred EEeCccCCc
Confidence 999876654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=122.97 Aligned_cols=157 Identities=19% Similarity=0.147 Sum_probs=127.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+++.+ +++++.+|||||||-|.+++..++.+ +++ ++++++ ++..+.+++. .+|++...|..+..+.
T Consensus 61 ~~~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 56688888 59999999999999999999999999 888 999999 8777777653 4799988888655444
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|-|+....++|+..+.-...++++++.|+|||++++.....++.+.. ...++..-. ..++|.-++..++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~y-iFPgG~lPs~~~i~~ 209 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKY-IFPGGELPSISEILE 209 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHh-CCCCCcCCCHHHHHH
Confidence 699999999999999889999999999999999999999887764321 111111111 357788889999999
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
..+++||.+.++..+.
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999998876654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=121.47 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC--
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+.+ ...++.+|||+|||+|.++..+++.+ |..+ ++++|+ +.+++.+++. .++++..+|+.+. ++.
T Consensus 10 ~~~~~~-~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELL-AVQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 355556 37788999999999999999999988 6778 999999 7777666442 5789999998764 443
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh-hhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
.|+|++.++++++++ ...++++++++|+|||++++.+.........+ ........... .. .......+..+|.
T Consensus 88 ~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WS--DHFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HH--hcCCCCcHHHHHH
Confidence 399999999999865 46899999999999999999886432211000 00000001111 00 1112234567899
Q ss_pred HHHHhCCCCeeeEEE
Q 025363 236 QLGFFAGFPHLRLYR 250 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~ 250 (254)
++++++||+.+++..
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999876644
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=124.82 Aligned_cols=156 Identities=17% Similarity=0.076 Sum_probs=106.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p 155 (254)
+.+++.++ .+..+|||+|||+|.++..+++. +.+ ++++|+ +++++.+++. ++++++.+|+.+. .+
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 34555553 45679999999999999999987 456 999999 8998887653 4789999988653 22
Q ss_pred -C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh---hhh---ccccCce
Q 025363 156 -A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF---VMT---IYRAKGN 227 (254)
Q Consensus 156 -~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~ 227 (254)
+ .|+|++..++|++++. ..+|++++++|||||+|++........ .........+... +.. .......
T Consensus 110 ~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCC
Confidence 3 3999999999998654 589999999999999999875432210 0000000000000 000 0000112
Q ss_pred ecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
..+.+++.++++++||++++...+
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeeeeeE
Confidence 357899999999999999876654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-16 Score=122.34 Aligned_cols=144 Identities=15% Similarity=0.031 Sum_probs=107.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------C----CcEEEeCCCCCCCCCccEEEecc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------P----GVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~----~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
+++|||||||+|-++..|++.. .+ ++++|. +.+++.+++. . |+++...|.....+..|+|++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4889999999999999999995 56 999999 8898888764 2 57888888876666679999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc-----eecCHHHHHHHHH
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-----NHRTEQEFKQLGF 239 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~~~ll~ 239 (254)
+++|. ++...+++.+.+.|||||+|+|.+....-.. +. ....++-..+. ..+.| +..++++...++.
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS---~~--~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS---FA--GTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH---hh--ccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHH
Confidence 99998 5567999999999999999999876543210 00 01112211111 12222 3458999999999
Q ss_pred hCCCCeeeEEEcc
Q 025363 240 FAGFPHLRLYRVL 252 (254)
Q Consensus 240 ~aGf~~~~~~~~~ 252 (254)
.+|+++..+....
T Consensus 239 ~~~~~v~~v~G~~ 251 (282)
T KOG1270|consen 239 ANGAQVNDVVGEV 251 (282)
T ss_pred hcCcchhhhhccc
Confidence 9999987766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=112.97 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=101.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~- 156 (254)
...+++.++ ..+..+|||+|||+|..+..++++ +.+ ++++|. +.+++.+++. -++.+...|+... ++.
T Consensus 19 ~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence 445566664 445679999999999999999986 457 999999 8888766432 2366777777543 343
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|++..++|++++++...++++++++|||||++++.+....+....++ +.....+.+|+.+
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~-----------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM-----------------PFSFTFKEDELRQ 157 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC-----------------CcCccCCHHHHHH
Confidence 49999999999998888889999999999999998777654322211000 0011257788888
Q ss_pred HHHhCCCCeeeEE
Q 025363 237 LGFFAGFPHLRLY 249 (254)
Q Consensus 237 ll~~aGf~~~~~~ 249 (254)
+++ +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 885 47766554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-16 Score=117.12 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=84.5
Q ss_pred CCCCeEEEecCcccHHHHHHH-HHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC----C-ccEEEe
Q 025363 96 KGVKRLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----A-ADAIFM 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~-~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p----~-~D~v~~ 162 (254)
++..+|||+|||+|.++..++ +.+|+.+ ++++|+ +++++.++.. ++++|..+|+.+ ++ . .|+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 357899999999999999999 4578888 999999 9999888762 689999999998 43 3 499999
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
..++|++++. ..+++++++.|+|||++++.+..
T Consensus 80 ~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 9999998655 58999999999999999999887
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=114.91 Aligned_cols=158 Identities=11% Similarity=-0.030 Sum_probs=107.1
Q ss_pred hHHHHHhhcCC-CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC
Q 025363 84 FMTSVLEGYNG-FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI 154 (254)
Q Consensus 84 ~~~~i~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~ 154 (254)
+.+.+++.++. ..+..+|||||||+|.++..+++. +.+ ++++|+ +++++.+++. .++.+..+|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 34445544421 345789999999999999999886 446 999999 8888877653 37899999986654
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc-cccCceecCHHH
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGNHRTEQE 233 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e 233 (254)
...|+|++..++++++.++...+++++.+++++++.+.+... . ... .....+....... ....-..++.++
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK----T---AWL-AFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHH-HHHHHHHhhCcCcccccceEEecHHH
Confidence 334999999999999888888999999999987655544211 1 110 0000011000000 001123458999
Q ss_pred HHHHHHhCCCCeeeEEEcc
Q 025363 234 FKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~ 252 (254)
+.++++++||+++......
T Consensus 190 ~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 190 LERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHHHcCceeeeeeccc
Confidence 9999999999999876543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=104.22 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=75.2
Q ss_pred EEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHH
Q 025363 102 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~ 174 (254)
||+|||+|..+..++++ +..+ ++++|. +++++.+++. .++++..+|+.+. +++. |+|++.+++|++ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHH
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCH
Confidence 79999999999999999 7777 999999 8888777654 5677999998886 5653 999999999999 566
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 025363 175 KLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i 193 (254)
.+++++++|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=113.25 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=100.6
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCC
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGD 149 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d 149 (254)
.|.+.-...+++ +..++...+ .....+|+|+|||+|..+..|++++|+.. ++++|. ++|++.++.. ++++|..+|
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceeccc
Confidence 354544454554 456777774 78889999999999999999999999999 999999 9999998766 889999999
Q ss_pred CCCCCCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 150 MFKSIPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 150 ~~~~~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+-+..|+ .|+++.+.+||-.+|. .++|.++...|.|||.|.+.=
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC
Confidence 9887665 3999999999977654 689999999999999999854
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=111.47 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=96.2
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccE
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADA 159 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~ 159 (254)
++..++ ..+..+|||||||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|.....+. .|+
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 345553 66788999999999999999999999888 999999 8888777542 5689999988654554 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
|++....+++ ..+++.+++.|+|||++++..... -+..++.++++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLE 145 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHH
Confidence 9987765432 468999999999999998844211 12346677889
Q ss_pred hCCCCeeeEEE
Q 025363 240 FAGFPHLRLYR 250 (254)
Q Consensus 240 ~aGf~~~~~~~ 250 (254)
++||+.+++..
T Consensus 146 ~~g~~~~~~~~ 156 (187)
T PRK08287 146 KCGVSELDCVQ 156 (187)
T ss_pred HCCCCcceEEE
Confidence 99988766543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=116.72 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred CCCCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC------------------------
Q 025363 95 FKGVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI------------------------ 140 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~------------------------ 140 (254)
..+..+|+|+|||+|. +++.+++..+ +.+ +++.|+ +.+++.+++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 3456899999999997 4666666654 467 999999 9999887763
Q ss_pred ---------CCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 141 ---------PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+|+|..+|+.+. .+. . |+|++++++|++++++..+++++++++|+|||+|++...
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 2689999999987 333 3 999999999999988889999999999999999998653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=126.76 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=110.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC---CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~---~p 155 (254)
....+++.++ ..+..+|||||||+|.++..+++.+. + ++++|. +.+++.++.. +++.++.+|+.+. +|
T Consensus 25 ~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 25 ERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 3456666664 55677999999999999999998853 5 899999 8888765432 5789999999642 34
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
. .|+|++..++|++++++..+++++++++|||||++++.|......... . .. ......++..+
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-~-----~~---------~~~~~~~~~~~ 165 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-K-----RK---------NNPTHYREPRF 165 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-c-----cc---------CCCCeecChHH
Confidence 3 399999999999999888999999999999999999998765433110 0 00 01123357889
Q ss_pred HHHHHHhCCCCeee
Q 025363 234 FKQLGFFAGFPHLR 247 (254)
Q Consensus 234 ~~~ll~~aGf~~~~ 247 (254)
|.+++.++||...+
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999998764
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-16 Score=107.96 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=60.6
Q ss_pred EEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C---CcEEEeCCCCCCCC--CccEEEeccccccC
Q 025363 102 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P---GVTHIGGDMFKSIP--AADAIFMKWVLTTW 169 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~---~i~~~~~d~~~~~p--~~D~v~~~~vlh~~ 169 (254)
||||||+|.++..+++++|..+ ++++|+ +.+++.++++ . ++++...|.++..+ ..|+|++.+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999999999999 999999 9999888775 2 34444455544433 24999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCEE
Q 025363 170 TDDECKLIMENCYKALPAGGKL 191 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l 191 (254)
++...+++++++.|+|||+|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 55679999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-14 Score=111.55 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=93.8
Q ss_pred hcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHh----hCCCCCCcEEEeCCCCCC-----CCC-ccE
Q 025363 91 GYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADA 159 (254)
Q Consensus 91 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~----~~~~~~~i~~~~~d~~~~-----~p~-~D~ 159 (254)
.+ ..+++.+|||+|||+|.++..+++..+..+ ++++|. ++|++ .+++..+|.++.+|..++ +++ .|+
T Consensus 67 ~l-~i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NF-PIKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hC-CCCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 35 377889999999999999999999987667 999999 76666 344446799999998653 233 388
Q ss_pred EEeccccccCCHH-HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 160 IFMKWVLTTWTDD-ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 160 v~~~~vlh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
|+. +.++. +...+|+++++.|||||+++|.=...+ .|.. .... +..++..+++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--------------~d~~------~~~~-~~~~~~~~~l 198 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS--------------IDVT------KDPK-EIFKEEIRKL 198 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccc--------------ccCc------CCHH-HHHHHHHHHH
Confidence 874 33322 345678999999999999999411100 0000 0001 1123446999
Q ss_pred HhCCCCeeeEEEccC
Q 025363 239 FFAGFPHLRLYRVLD 253 (254)
Q Consensus 239 ~~aGf~~~~~~~~~~ 253 (254)
+++||+.++...+..
T Consensus 199 ~~aGF~~i~~~~l~p 213 (226)
T PRK04266 199 EEGGFEILEVVDLEP 213 (226)
T ss_pred HHcCCeEEEEEcCCC
Confidence 999999999887643
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=113.10 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=103.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-c
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-D 158 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D 158 (254)
..+.+++.++ ..+..+|||+|||+|.++..+.+. +.+ ++++|+ +.+++.+++. ..+.++.+|+.+. +++ . |
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 4455666664 455789999999999999888765 456 999999 9999888765 4467889998764 444 3 9
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
+|++..++|..++ ...+|++++++|+|||++++........ +.........+. . .......+.+++.+++
T Consensus 106 ~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~---~--~~~~~~~~~~~l~~~l 175 (251)
T PRK10258 106 LAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDE---R--PHANRFLPPDAIEQAL 175 (251)
T ss_pred EEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhcc---C--CccccCCCHHHHHHHH
Confidence 9999999986543 5689999999999999999977643321 100000000000 0 0112335889999999
Q ss_pred HhCCCCe
Q 025363 239 FFAGFPH 245 (254)
Q Consensus 239 ~~aGf~~ 245 (254)
+..|++.
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9888864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=120.39 Aligned_cols=155 Identities=12% Similarity=-0.010 Sum_probs=112.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCCCCCccEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIPAADAI 160 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~~p~~D~v 160 (254)
.+.+++.++ ..++.+|||||||+|.++..+++.+ +.+ ++++|+ +++++.+++. ..+++...|+.+.....|+|
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE
Confidence 344666664 7788999999999999999998876 567 999999 8888877653 34788888875432224999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++..+++++++.....++++++++|||||++++.+...+...... . .+++- . ..++|...+.+++...++
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-~----~~i~~--y--ifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-D----PWINK--Y--IFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-C----CCcee--e--ecCCCcCCCHHHHHHHHH-
Confidence 999999998887788999999999999999999877554321110 0 01111 1 134555668888888766
Q ss_pred CCCCeeeEEEcc
Q 025363 241 AGFPHLRLYRVL 252 (254)
Q Consensus 241 aGf~~~~~~~~~ 252 (254)
.||.+.++..+.
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589888876653
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-14 Score=113.19 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC--CCC-ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS--IPA-ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~--~p~-~D~v~~~ 163 (254)
..+..+|||||||+|.++..+++. .++.+ ++++|+ +++++.+++. .++++...+.... .++ .|+|++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 355679999999999999888764 34567 999999 9999887764 4566666544322 223 3999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh-h-ccccC-----ceecCHHHHHH
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-T-IYRAK-----GNHRTEQEFKQ 236 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~t~~e~~~ 236 (254)
.++||+++++...+|++++++++ |.+++.|...+.. ... .......... . ..... -+.++.+|+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~--~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA--LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH--HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 99999998888899999999998 6667766544321 000 0000000000 0 00000 12368999999
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
++++ ||++...-+
T Consensus 210 ll~~-Gf~~~~~~~ 222 (232)
T PRK06202 210 LAPQ-GWRVERQWP 222 (232)
T ss_pred HhhC-CCeEEeccc
Confidence 9999 999876544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=111.28 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=88.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCC-c-cEEEeccccccCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA-A-DAIFMKWVLTTWT 170 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~-~-D~v~~~~vlh~~~ 170 (254)
..+..+|||||||+|..+..+++..|+.+ ++++|+ +++++.+++. +++.+..+|+.++++. . |+|++..+|||++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence 34567899999999999999999888888 999999 8999998774 6788999999886544 3 9999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+++..++++++.+++ +++++|.|...+.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 888899999999997 5788888876544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=111.14 Aligned_cols=136 Identities=21% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-CCC--ccEEEeccccccCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 170 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~p~--~D~v~~~~vlh~~~ 170 (254)
...+|||||||+|.++..+++.+|..+ ++++|. +.++..++.. ++++++.+|+.+. ++. .|+|++.+++|+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 347899999999999999999999888 999999 8887666554 5789999999875 343 39999999999874
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
+ ...+|++++++|+|||++++.++...... .+.... ........+.++|.++++++ |+...+.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFSTFGPGTLH------------ELRQSF-GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEeCCccCHH------------HHHHHH-HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 46899999999999999999865432210 000000 00123345788899999888 8766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-14 Score=115.78 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=103.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~- 157 (254)
+.++..++ ..+..+|||||||+|..+..+++. +.+ ++++|. +.+++.+++. -++++...|+.+. +++.
T Consensus 110 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f 185 (287)
T PRK12335 110 SEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY 185 (287)
T ss_pred HHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence 34444443 334569999999999999999886 467 999999 8887765532 3678888888665 4443
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+|++..++|++++++...++++++++|+|||++++......+....+ . +....++.+|+.++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~---------p~~~~~~~~el~~~ 248 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M---------PFSFTFKEGELKDY 248 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C---------CCCcccCHHHHHHH
Confidence 999999999999888889999999999999999887654432221100 0 00112578888888
Q ss_pred HHhCCCCeeeEEEcc
Q 025363 238 GFFAGFPHLRLYRVL 252 (254)
Q Consensus 238 l~~aGf~~~~~~~~~ 252 (254)
++. |+++......
T Consensus 249 ~~~--~~i~~~~e~~ 261 (287)
T PRK12335 249 YQD--WEIVKYNENV 261 (287)
T ss_pred hCC--CEEEEEeccc
Confidence 854 8887765433
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-15 Score=115.41 Aligned_cols=144 Identities=14% Similarity=0.068 Sum_probs=102.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C--CcEEEeCCCCCCC-C-C-ccEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P--GVTHIGGDMFKSI-P-A-ADAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~--~i~~~~~d~~~~~-p-~-~D~v~~~~vlh 167 (254)
++.+|||||||.|.++..+++.. .. +++.|+ +..++.++.. . .|++.+...++-. . + .|+|++..+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 57899999999999999999995 67 999999 8888888754 2 2446666555442 2 2 39999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc-----eecCHHHHHHHHHhCC
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-----NHRTEQEFKQLGFFAG 242 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~~~ll~~aG 242 (254)
|.+++ ..+++.|.+.+||||.+++........ ...........+..+ .+.| +..-++|+..++..+|
T Consensus 136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~---vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRI---VPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHh---cCCcchhHHHhcCHHHHHHhcccCC
Confidence 99776 469999999999999999987753321 111111111111111 2222 2346789999999999
Q ss_pred CCeeeEEEc
Q 025363 243 FPHLRLYRV 251 (254)
Q Consensus 243 f~~~~~~~~ 251 (254)
+.+.+...+
T Consensus 208 ~~~~~~~g~ 216 (243)
T COG2227 208 LKIIDRKGL 216 (243)
T ss_pred ceEEeecce
Confidence 998776543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=109.18 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCCccEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~~D~v~~~~vl 166 (254)
..+..+|||||||+|.++..+++.. .. ++++|+ +.+++.+++. .++.+..+|+.......|+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchh
Confidence 4567899999999999999999874 45 899998 8888777653 37899999943222224999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
|++++++...+++++.+.+++++.+.+ .. .. +........................+.++|.++++++||++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTF-AP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEE-CC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 999999999999999998754443322 11 11 000000000000000000111234578999999999999999
Q ss_pred eEEEcc
Q 025363 247 RLYRVL 252 (254)
Q Consensus 247 ~~~~~~ 252 (254)
++..+.
T Consensus 211 ~~~~~~ 216 (230)
T PRK07580 211 RTERIS 216 (230)
T ss_pred eeeecc
Confidence 887653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-14 Score=99.96 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=72.3
Q ss_pred EEEecCcccHHHHHHHHHc---CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC--ccEEEec-cccc
Q 025363 101 LVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA--ADAIFMK-WVLT 167 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~---~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~--~D~v~~~-~vlh 167 (254)
|||+|||+|..+..+++.+ |..+ ++++|+ +++++.+++. .+++++.+|+.+. ... .|+|++. .++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999997 4467 999999 8898877653 4899999999764 323 3999995 5599
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 025363 168 TWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG 189 (254)
++++++..++++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=108.24 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~ 172 (254)
+..+|||||||+|..+..+++.+ +.+ ++++|. ++|++.+++. ..++.+|+.+. +++. |+|++..++|++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC-
Confidence 46799999999999999999887 557 999999 9999988764 34677888764 4443 99999999999865
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
..+++++++|+|||. +.+.|...+
T Consensus 126 -~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 126 -IEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred -HHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 468999999999993 445565444
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=103.40 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=102.4
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH----HhhCCC--CCCc-EEEeCCCCCC-C--C-------C-ccEE
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV----VAEAPS--IPGV-THIGGDMFKS-I--P-------A-ADAI 160 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~----~~~~~~--~~~i-~~~~~d~~~~-~--p-------~-~D~v 160 (254)
+|||||+|||..+..+++++|+++ --=-|. +.. .+-..+ .+++ .-+..|+.++ . + . .|+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999999999976 432343 221 111111 1221 1223455444 1 1 1 3999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++.+++|..+.+.+..+++.+.++|+|||.|++.-+...+..-.+ .....+|-..-. ..+....|..+++.++.++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~-rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRS-RDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhc-CCCCcCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999988776542111 111234433222 2333455899999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+..+...+|.
T Consensus 183 ~GL~l~~~~~MPA 195 (204)
T PF06080_consen 183 HGLELEEDIDMPA 195 (204)
T ss_pred CCCccCcccccCC
Confidence 9999998888763
|
The function of this family is unknown. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=103.77 Aligned_cols=172 Identities=14% Similarity=0.096 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C
Q 025363 69 MNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P 141 (254)
Q Consensus 69 ~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~ 141 (254)
....|++.|..+.+.+...+-... ..+....||+||||||..-.. ..--|..+ ++.+|. |.|.+-+.+. .
T Consensus 49 ft~~yne~~~~ykrelFs~i~~~~-gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 49 FTSIYNEIADSYKRELFSGIYYFL-GKSGKGDVLEVGCGTGANFKF-YPWKPINS-VTCLDPNEKMEEIADKSAAEKKPL 125 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHh-cccCccceEEecccCCCCccc-ccCCCCce-EEEeCCcHHHHHHHHHHHhhccCc
Confidence 345677777777665555554333 344556789999999987643 22225566 999998 7776544322 4
Q ss_pred CcE-EEeCCCCCC--CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH
Q 025363 142 GVT-HIGGDMFKS--IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI 216 (254)
Q Consensus 142 ~i~-~~~~d~~~~--~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~ 216 (254)
.+. |+.++..+- ++++ |+|++..+|+-. +++++.|++++++|+|||++++.|....+... +........+-
T Consensus 126 ~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep 201 (252)
T KOG4300|consen 126 QVERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEP 201 (252)
T ss_pred ceEEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhch
Confidence 566 888877654 3554 999999999855 67789999999999999999999998765432 11000011111
Q ss_pred hhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 217 FVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 217 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
... ....|...|++.| +.|+.|-|+..+..+
T Consensus 202 ~~~--~~~dGC~ltrd~~-e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 202 LWH--LESDGCVLTRDTG-ELLEDAEFSIDSCKR 232 (252)
T ss_pred hhh--eeccceEEehhHH-HHhhhcccccchhhc
Confidence 111 1345677777776 567888888776543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=110.13 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCeEEEecCcccHHHHHH--HHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC---CccEEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMI--LQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP---AADAIF 161 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l--~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p---~~D~v~ 161 (254)
.+..+|+|||||.|.++..+ ++.+|+.+ ++.+|. +++++.+++. ++|+|..+|..+..+ ..|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 36789999999988554443 34678989 999999 8888766542 679999999987643 239999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. ++|+|..++..++|+++++.|+|||.|++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999987788999999999999999999854
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=100.79 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-ccEEEeccccccC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 169 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~ 169 (254)
+..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|+.+..+. .|+|++...+|..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 356899999999999999999876 6 999999 8888877653 3578899998776444 4999998877765
Q ss_pred CHH-------------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 170 TDD-------------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 170 ~~~-------------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++. -..++++++.+.|+|||++++.+.... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------~ 145 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------G 145 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------C
Confidence 432 135789999999999999999764221 2
Q ss_pred HHHHHHHHHhCCCCeeeEE
Q 025363 231 EQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~ 249 (254)
..++.+++++.||+...+.
T Consensus 146 ~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred hHHHHHHHHhCCCeEEEEE
Confidence 3466788889999876654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=105.63 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----CCC-cEEEeCCCCCCCCC---ccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----IPG-VTHIGGDMFKSIPA---ADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----~~~-i~~~~~d~~~~~p~---~D~v~~~~vl 166 (254)
...+.||+|+|.|..+..++..+-+ + +-++|. +..++.+++ ..+ .++.+.-+.+..|+ +|+|++.+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~-VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-E-VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-E-EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcC-E-eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4679999999999999988765422 3 777787 888888773 234 34444444443443 3999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
-|++|++.+++|++|+++|+|+|.++|-|.+..... ..+|- ..++-.|+.+.|++++++||++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~------~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE------EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET------TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC------ccCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999998876431 01221 234556899999999999999998
Q ss_pred eEEEcc
Q 025363 247 RLYRVL 252 (254)
Q Consensus 247 ~~~~~~ 252 (254)
....=.
T Consensus 198 ~~~~Q~ 203 (218)
T PF05891_consen 198 KEEKQK 203 (218)
T ss_dssp EEEE-T
T ss_pred Eecccc
Confidence 866543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=104.62 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=105.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-C----CCc--cEEEec
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-I----PAA--DAIFMK 163 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~----p~~--D~v~~~ 163 (254)
.+||+||||.|.....+++..|+ +. +..+|. |..++..++. .++.-..-|+..+ . +.+ |.+++-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 48999999999999999999888 78 899998 8888877664 4455444555544 1 223 999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc--eecCHHHHHHHHHhC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG--NHRTEQEFKQLGFFA 241 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~a 241 (254)
.+|..++++.-..++++++++|||||.|++-|....+...-.. .....++.+... ...|. ..++.+++.+++++|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYV-RgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYV-RGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEE-ccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999999999999876654311000 011122222221 11111 235899999999999
Q ss_pred CCCeeeE
Q 025363 242 GFPHLRL 248 (254)
Q Consensus 242 Gf~~~~~ 248 (254)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987664
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=104.36 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=80.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCCCCCc--cEEEeccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKSIPAA--DAIFMKWVLT 167 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~~p~~--D~v~~~~vlh 167 (254)
-..-.+++|+|||.|.++..|+.++. + ++++|. +..++.++++ ++|+++.+|+-+..|.+ |+|+++.++|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLY 117 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GG
T ss_pred ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhH
Confidence 55567999999999999999999974 3 888998 8888877653 78999999998876654 9999999999
Q ss_pred cCCH-HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTD-DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+++ ++...+++++.++|+|||.|++...
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9985 6788999999999999999999775
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=105.54 Aligned_cols=147 Identities=14% Similarity=0.003 Sum_probs=98.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC--C-C-ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI--P-A-ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~--p-~-~D~v~~~~ 164 (254)
..++.+|||||||+|.++..+++. ..+ ++++|. +.+++.+++. .++++...|+.+.. + . .|+|++.+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 446789999999999999988876 456 899998 7777666532 35777777775432 2 2 39999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc---cCceecCHHHHHHHHHhC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR---AKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~~a 241 (254)
++++.++ ...+|+.+.+.|+|||++++...... . ................... ......+.++|.++++++
T Consensus 123 ~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 123 MLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRN-L---KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred HhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCC-h---HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence 9998864 45789999999999999998754211 1 0000000000000000000 012335889999999999
Q ss_pred CCCeeeEEE
Q 025363 242 GFPHLRLYR 250 (254)
Q Consensus 242 Gf~~~~~~~ 250 (254)
||++++...
T Consensus 197 Gf~~v~~~~ 205 (233)
T PRK05134 197 GLEVQDITG 205 (233)
T ss_pred CCeEeeeee
Confidence 999887753
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=110.95 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~p 155 (254)
+-+++.++ .....+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++ .++++...|.++..+
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 33556664 44456999999999999999999999999 999999 7888777642 268999999987754
Q ss_pred C--ccEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A--ADAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~--~D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|+++-.+|. ++++...++++.+++.|+|||.|+++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 499999766553 556667899999999999999999874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=100.60 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C-ccEEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-ADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~-~D~v~~~~vlh~ 168 (254)
+.+|||||||+|..+..++...|+.+ ++++|. +.+++.+++. ++++++.+|+.+..+ . .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 67999999999999999998888888 999999 7766554321 569999999977422 2 49998865 543
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ ..+++.+++.|+|||++++..
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEc
Confidence 3 467889999999999999863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-12 Score=98.95 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=82.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP- 155 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p- 155 (254)
.++.+|||+|||.|..+..|+++ +.. ++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 45679999999999999999987 567 999999 777765311 1468999999998632
Q ss_pred --C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 --A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 --~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|.|+-..++|+++++.....++.+.++|||||++++.....
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 2 399999999999999999999999999999999877765544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-13 Score=110.79 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-----C--CcEEEeCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-----P--GVTHIGGDMFKS-- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-----~--~i~~~~~d~~~~-- 153 (254)
.+.+++.+ +++.+|||+|||+|..+..|+++.+ ..+ ++++|+ ++|++.+++. + +|.++.+|+.+.
T Consensus 54 ~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 54 ADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 34445444 3467899999999999999999987 577 999999 8888766542 3 356789999874
Q ss_pred CCC-----c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 154 IPA-----A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 154 ~p~-----~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.+. . .++++...+++++++++..+|++++++|+|||.+++.
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 222 1 3555668899999999999999999999999999873
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=92.26 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~- 156 (254)
+++.+. ..+..+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++.. .++.++.+|.... .+.
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 455553 55677999999999999999999999888 999998 7777766532 5788888887642 223
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.|+|++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 49999876543 3358999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=106.06 Aligned_cols=143 Identities=15% Similarity=0.033 Sum_probs=92.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCCCCCccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
++.+|||||||+|.++..+++. +.+ ++++|+ +.|++.++++ .++.|..+|+.+.....|+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 4679999999999999999986 457 999999 8888776543 247888888754322249999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
+++|++++....+++.+.+. .+||. +|.. .+.. .........-...............+.++++++++++||+
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~---~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT---LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc---hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCE
Confidence 99999888777888888864 45544 4422 1111 0000000000000000000011224799999999999999
Q ss_pred eeeEE
Q 025363 245 HLRLY 249 (254)
Q Consensus 245 ~~~~~ 249 (254)
+....
T Consensus 294 v~~~~ 298 (315)
T PLN02585 294 VARRE 298 (315)
T ss_pred EEEEE
Confidence 87644
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=98.21 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=92.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hH----HHhhCCCCCCcEEEeCCCCCCC-----CC-ccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PE----VVAEAPSIPGVTHIGGDMFKSI-----PA-ADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~----~~~~~~~~~~i~~~~~d~~~~~-----p~-~D~v~ 161 (254)
++++..+|||+|||+|.++..+++... ..+ ++++|+ +. +++.++..++|.++.+|+..+. .+ .|+|+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 467889999999999999999999874 457 899998 54 5566655578999999986541 12 39998
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCcee-cCHHHHHHHHHh
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH-RTEQEFKQLGFF 240 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~e~~~ll~~ 240 (254)
+.... .++...++.++++.|||||+|+|... .... +. .....+ +. +|. ++|++
T Consensus 208 ~Dva~----pdq~~il~~na~r~LKpGG~~vI~ik-a~~i-------------d~------g~~pe~~f~-~ev-~~L~~ 261 (293)
T PTZ00146 208 ADVAQ----PDQARIVALNAQYFLKNGGHFIISIK-ANCI-------------DS------TAKPEVVFA-SEV-QKLKK 261 (293)
T ss_pred EeCCC----cchHHHHHHHHHHhccCCCEEEEEEe-cccc-------------cc------CCCHHHHHH-HHH-HHHHH
Confidence 86631 23455677789999999999999321 1111 00 000011 12 344 88999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+.++...+.-
T Consensus 262 ~GF~~~e~v~L~P 274 (293)
T PTZ00146 262 EGLKPKEQLTLEP 274 (293)
T ss_pred cCCceEEEEecCC
Confidence 9999998877653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=100.13 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=77.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC--ccEEEecccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~--~D~v~~~~vl 166 (254)
+++.+|||||||+|..+..++++.|+.+ ++++|. +.+++.+++. ++++++.+|+.+..+. .|+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3478999999999999999999999989 999999 8888766543 4599999998775323 499998652
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.....+++++++.|||||++++.+.
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2346789999999999999998753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=102.76 Aligned_cols=144 Identities=15% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC-C--C-ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI-P--A-ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~-p--~-~D~v~~~~v 165 (254)
.+.+|||+|||+|.++..+++.. .. ++++|. +.+++.++.. .++++...|+.+.. + . .|+|++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46799999999999999988764 45 889998 7777766542 25888888876542 2 3 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHHHHHHHHh
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQEFKQLGFF 240 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~ 240 (254)
+|+..+. ..+|++++++|+|||.+++.+...... ........ ... ... .... ....+..++.+++++
T Consensus 122 l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 122 LEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVG-AEY-ILR-IVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHh-hhh-hhh-cCCCCcCChhhcCCHHHHHHHHHH
Confidence 9988544 589999999999999999876532110 10000000 000 000 0011 123478899999999
Q ss_pred CCCCeeeEEEc
Q 025363 241 AGFPHLRLYRV 251 (254)
Q Consensus 241 aGf~~~~~~~~ 251 (254)
+||+++++..+
T Consensus 194 ~G~~i~~~~~~ 204 (224)
T TIGR01983 194 AGLRVKDVKGL 204 (224)
T ss_pred cCCeeeeeeeE
Confidence 99999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-12 Score=101.72 Aligned_cols=132 Identities=22% Similarity=0.268 Sum_probs=95.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~- 156 (254)
...+++.++ ....+|||+|||+|..+..+++.+|+.+ ++++|. +.+++.++.. ++++++.+|+++..+.
T Consensus 77 ~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 77 VEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 333444442 2346899999999999999999999888 999998 8888777643 4699999999887543
Q ss_pred -ccEEEeccccc------cCCHH------------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc
Q 025363 157 -ADAIFMKWVLT------TWTDD------------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL 211 (254)
Q Consensus 157 -~D~v~~~~vlh------~~~~~------------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~ 211 (254)
.|+|++.-..+ .+..+ ....+++++.+.|+|||++++...
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~--------------- 218 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG--------------- 218 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---------------
Confidence 39999843222 22111 124789999999999999887321
Q ss_pred ccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 212 LEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
....+++.++++++||+.+++..
T Consensus 219 ----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 01345678899999998877654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=99.49 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=83.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----CCCcEEEeCCCCCC-CCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----~~~i~~~~~d~~~~-~p~ 156 (254)
....+++..+ .-+..++||+|||.|..+..|+++ +.. ++++|. +..++.++. .-.|+....|+.+. +++
T Consensus 18 ~hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~ 93 (192)
T PF03848_consen 18 THSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE 93 (192)
T ss_dssp --HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT
T ss_pred CcHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC
Confidence 3455666675 556789999999999999999999 566 999998 666655432 13488899998776 555
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. |+|++..+++++..+...++++++.+.++|||++++...+.
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 4 99999999999998889999999999999999998866543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=106.20 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=85.7
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-ccE
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADA 159 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~D~ 159 (254)
.+++.++ .....+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++.. -..+++..|.++..++ .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455553 33356899999999999999999999999 999999 7888877653 2356788888776554 499
Q ss_pred EEeccccccC---CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVLTTW---TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vlh~~---~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+++-.+|.. ..+...++++++.+.|||||.|+++-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999888862 345678999999999999999988654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=101.17 Aligned_cols=140 Identities=22% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC------CCC-CCcEEEeCCCCCCCCC--c-cEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA------PSI-PGVTHIGGDMFKSIPA--A-DAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~------~~~-~~i~~~~~d~~~~~p~--~-D~v~~~~v 165 (254)
.+++|||||||.|.++..++.+.+. . ++++|. +....+. ... .++.+.. ...+++|. . |+|++..|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~-ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-S-VIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-E-EEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccCCcCEEEEeee
Confidence 4689999999999999999998543 4 899996 4332221 111 2233332 23333332 3 99999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCce-ecCHHHHHHHHHhCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGN-HRTEQEFKQLGFFAG 242 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ll~~aG 242 (254)
|+|.. +....|+++++.|+|||.|++-..+++.....- +..+.. .| .+.- ..|...+..|++++|
T Consensus 192 LYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m-----~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 192 LYHRR--SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KM-----RNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred hhccC--CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CC-----CceEEeCCHHHHHHHHHHcC
Confidence 99974 457999999999999999998777666543210 000100 00 0000 138899999999999
Q ss_pred CCeeeEEEc
Q 025363 243 FPHLRLYRV 251 (254)
Q Consensus 243 f~~~~~~~~ 251 (254)
|+.+++..+
T Consensus 260 F~~v~~v~~ 268 (315)
T PF08003_consen 260 FKDVRCVDV 268 (315)
T ss_pred CceEEEecC
Confidence 999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=98.91 Aligned_cols=140 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC------CCc-EEEeCCCCCC--C----CCccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI------PGV-THIGGDMFKS--I----PAADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~------~~i-~~~~~d~~~~--~----p~~D~ 159 (254)
....+||||+||+|.+....+..+|. .+ +...|. |..++..++. ..+ +|+.+|.|+. . |.-++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45679999999999999999999997 56 888898 7666665532 444 9999999986 2 22399
Q ss_pred EEeccccccCCHHH-HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHH
Q 025363 160 IFMKWVLTTWTDDE-CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQE 233 (254)
Q Consensus 160 v~~~~vlh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e 233 (254)
++++.++..|+|.+ +...|+.+++++.|||+|+....-+...- +.....+.- + .+ -+.||+.|
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e~IAr~Lts-----H-r~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----EMIARVLTS-----H-RDGKAWVMRRRSQAE 281 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----HHHHHHHhc-----c-cCCCceEEEecCHHH
Confidence 99999999999977 45579999999999999998654332221 111111100 0 01 14589999
Q ss_pred HHHHHHhCCCCeee
Q 025363 234 FKQLGFFAGFPHLR 247 (254)
Q Consensus 234 ~~~ll~~aGf~~~~ 247 (254)
+.+|+++|||+-++
T Consensus 282 mD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 282 MDQLVEAAGFEKID 295 (311)
T ss_pred HHHHHHHcCCchhh
Confidence 99999999997543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=96.55 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=81.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..+..+|||+|||.|..+..|+++ +.+ ++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 445679999999999999999986 667 999999 776665311 1568999999998732
Q ss_pred C----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 A----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|+|+-+.++|+++++...+.++.+.++|+|||++++.....
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 2 299999999999999999999999999999999766544433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=97.67 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=79.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-Cc-cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-AA-DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~~-D~v~~~~vlh 167 (254)
+..+|||+|||+|..+..+++++|+.+ ++.+|. +.+++.++.+ ..+++...|.++..+ .. |+|+++--+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 577999999999999999999999989 999999 8888877653 338899999999866 33 9999987777
Q ss_pred cCCH---HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 TWTD---DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~~~~---~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.-.+ .-..++++.+++.|+|||+|+++-
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 5443 346789999999999999997644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=96.48 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---CCC--ccEEEeccccccC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW 169 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---~p~--~D~v~~~~vlh~~ 169 (254)
+++.+|||||||+|.++..+++.. ... ++++|+ +++++.++. .+++++.+|+.+. .+. .|+|++.+++|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 356799999999999998887663 567 899999 888877654 4688888888653 333 3999999999998
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhccc----ch----HhhhhccccCceecCHHHHHHHHHhC
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLE----GD----IFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
++ ...+|+++.+.+++ +++.-+... .+....... +. +..........+..+.+++.++++++
T Consensus 89 ~d--~~~~l~e~~r~~~~---~ii~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~ 158 (194)
T TIGR02081 89 RN--PEEILDEMLRVGRH---AIVSFPNFG-----YWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL 158 (194)
T ss_pred cC--HHHHHHHHHHhCCe---EEEEcCChh-----HHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC
Confidence 65 45788888877653 333211110 000000000 00 00000001123456899999999999
Q ss_pred CCCeeeEEEcc
Q 025363 242 GFPHLRLYRVL 252 (254)
Q Consensus 242 Gf~~~~~~~~~ 252 (254)
||++++.....
T Consensus 159 Gf~v~~~~~~~ 169 (194)
T TIGR02081 159 NLRILDRAAFD 169 (194)
T ss_pred CCEEEEEEEec
Confidence 99998877654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-12 Score=98.68 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC--ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA--ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~--~D~v~~~ 163 (254)
+..+|||||||+|..+..+++.+|+.+ ++++|. +++++.+++. ++++++.+|+.+. ++. .|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 567999999999999999999999888 999999 8888776542 5799999998322 333 2999886
Q ss_pred cccccCC------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWT------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
....... ......++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432111 1123678999999999999999864
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-11 Score=89.37 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=81.9
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC---cc
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA---AD 158 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~---~D 158 (254)
+..+ ...++..++|||||||..+.+++..+|..+ ++++|. ++.++..+.+ +++.++.+|.-+.+++ .|
T Consensus 27 ls~L-~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKL-RPRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhh-CCCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 3555 478889999999999999999999999999 999998 7777766553 8899999999776433 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|++...- ....+|+.+...|||||+|++.-
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCcCCeEEEEe
Confidence 99997762 34689999999999999998843
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=95.79 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=78.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
...+++.++ ..++.+|||||||+|..+..+++..+ ..+ ++.+|. +++++.++++ .+++++.+|+.+.++
T Consensus 61 ~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 344556663 66788999999999999999998875 456 999999 8888766542 358999999987644
Q ss_pred C---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 156 A---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 156 ~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. .|+|++..++++++ +++.+.|+|||+|++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 2 39999988877553 4678899999999884
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=93.09 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC---------CCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~---------~p~ 156 (254)
++.+.+..++++.+|||||||+|.++..+++..+ ..+ ++++|+.++. ..+++.++.+|+.+. .+.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444443356788999999999999999999874 457 9999994432 235799999999874 233
Q ss_pred --ccEEEeccccccCCHH---------HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 --ADAIFMKWVLTTWTDD---------ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~---------~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++..+.+..... ....+|+.++++|+|||++++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3999987655543221 125689999999999999999654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-11 Score=97.42 Aligned_cols=122 Identities=24% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C-ccEEEeccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-ADAIFMKWV 165 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~-~D~v~~~~v 165 (254)
..+..+|||+|||+|..+..+++..|..+ ++++|+ +.+++.++++ .++.++.+|+++..+ . .|+|++.--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 45678999999999999999999999888 999999 7777766542 579999999987754 3 399987421
Q ss_pred c------ccCC------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc
Q 025363 166 L------TTWT------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 221 (254)
Q Consensus 166 l------h~~~------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
. +... -+...++++++.+.|+|||++++ +...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g~----------------------- 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIGY----------------------- 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EECc-----------------------
Confidence 1 1111 12236789999999999999887 2100
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
...+++.+++++.||+.+++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEE
Confidence 12345788889999986655
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=96.34 Aligned_cols=97 Identities=13% Similarity=0.239 Sum_probs=75.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC-c-cEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA-A-DAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~-~-D~v~~~ 163 (254)
...+|||||||+|.++..+++++|+.. ++++|+ +.+++.++.. .+++++.+|+.+. ++. . |.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999999999999 999999 8887776542 5799999999652 343 2 888775
Q ss_pred cccccCCHHH-------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWTDDE-------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~~~~-------~~~il~~~~~~L~pgG~l~i~d 195 (254)
.... |+... ...++++++++|||||.|++..
T Consensus 95 ~pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5332 22211 1468999999999999998864
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=94.61 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=79.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p 155 (254)
....+++.++ ..++.+|||||||+|..+..+++..+ +.+ ++.+|. +++++.++++ .+++++.+|..+..+
T Consensus 64 ~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 64 MVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 3455677774 78889999999999999999888864 457 999999 8888877653 579999999987633
Q ss_pred -C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 -A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 -~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++...++.. .+.+.+.|||||+|++..
T Consensus 142 ~~~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 2 3999987776543 346677899999998853
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=91.84 Aligned_cols=123 Identities=21% Similarity=0.239 Sum_probs=81.6
Q ss_pred Eeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 127 NFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 127 ~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++|. ++|++.++++ .+|+++.+|+.+. +++ . |+|++..++|++++ ..++|++++++|||||+|++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEEE
Confidence 6788 8888876432 3699999999765 444 3 99999999999864 46899999999999999999
Q ss_pred EccccCCCCCChhhhhhcc---cchHhhhhccccC---------ceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 194 CEPVLPDDSNESQRTRALL---EGDIFVMTIYRAK---------GNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 194 ~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
.|...++..-......... ......+. .... ....+.+++.++|+++||+.++.....
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVATVY-DLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhHHh-CChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9987654311100000000 00000000 0000 122488999999999999988776654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-10 Score=88.66 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CC-cEEEeCCCCCCCCC--ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PG-VTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~-i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
.++.+|||+|||+|.++..+++. +.+ ++++|. +++++.+++. ++ +.++.+|+.+.+++ .|+|++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 45679999999999999999988 567 999999 8888776432 22 88999999887544 39999865
Q ss_pred ccccCC-------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC
Q 025363 165 VLTTWT-------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 165 vlh~~~-------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
.+.... ......+++++.++|||||++++.....
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------------- 151 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------------- 151 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------------------
Confidence 443211 1234678999999999999988753211
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEE
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
...+++.++++++||++..+.
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeee
Confidence 123457788999999876653
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=90.67 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred hhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---CC-
Q 025363 90 EGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---PA- 156 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p~- 156 (254)
..+ ...++.+|||+|||+|.++..+++.. +..+ ++++|. +.+++.++++ +++.++.+|+.+.. +.
T Consensus 34 ~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 444 36778899999999999999998875 4567 999999 8888866532 57889999987642 22
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.|+|++... ..+...+++.+.+.|+|||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 499988432 23456899999999999999986
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=93.49 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
...+++.++ ..++.+|||||||+|..+..+++..+ +.+ ++.+|. +++++.++++ .+++++.+|..+..+.
T Consensus 66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 445666664 77889999999999999999999865 467 899998 8888877643 5799999999875332
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.|+|++...... +.+.+.+.|+|||+|++.
T Consensus 144 ~~~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence 499998765543 345678899999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=92.05 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=77.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC-C
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-A 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p-~ 156 (254)
++..++ ..++.+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ .+++++.+|+.+. .. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455553 66788999999999999999998888888 999999 8888877643 5689999988653 22 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|.+++.. .....++++++++.|+|||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 36655421 12346899999999999999998764
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-11 Score=98.41 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC---CeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc--cEEEecccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI---CEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~ 168 (254)
+..+|||||||+|.++..+++.++.. . ++++|+ +.+++.+++. +++.+..+|..+. ++.. |+|+....-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 45789999999999999999987743 6 899999 8888887654 7799999998764 4443 999875431
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..+++++++|||||+|++..+
T Consensus 162 -------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 -------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -------CCHHHHHhhccCCCEEEEEeC
Confidence 235789999999999998754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=93.33 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=87.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-A 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~ 157 (254)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+ ++.+|. ...++.++++ .+..+...|.+++..+ .
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44677775 55556999999999999999999999999 999998 7777777765 2335778888888555 4
Q ss_pred cEEEeccccccC---CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTTW---TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~~---~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+|+++=-+|.- ...-..+++++.++.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999852 233355899999999999999988654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=96.68 Aligned_cols=96 Identities=23% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc--
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW-- 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~-- 164 (254)
+..+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ .+|+++.+|+++.++. .|+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 457899999999999999999999989 999999 8888877653 4799999999877654 39999841
Q ss_pred -----------ccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 -----------VLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 -----------vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.+++.+. +....+++++.+.|+|||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0111110 1236789999999999999876
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=91.73 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=92.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCC-CC-ccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSI-PA-ADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~-p~-~D~v~~~~vlh~~~~~ 172 (254)
...+|||+|||+|.++..++++.+..+ ++++|+ +.+++.+++. ++++++.+|+.+.. +. .|+|++.-.+++.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 356999999999999999988877778 999999 8898887764 67999999998764 33 3999997777764433
Q ss_pred H------------------HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHH
Q 025363 173 E------------------CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 173 ~------------------~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
+ ..+.++.....|+|+|.+.++ +...+ .+ ....+.+|+
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--yss~~-----------~y-----------~~sl~~~~y 198 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--YSGRP-----------YY-----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--Eeccc-----------cc-----------cccCCHHHH
Confidence 2 135667778888899877665 11100 00 112478899
Q ss_pred HHHHHhCCCCe
Q 025363 235 KQLGFFAGFPH 245 (254)
Q Consensus 235 ~~ll~~aGf~~ 245 (254)
+.+|+++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999963
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=86.30 Aligned_cols=146 Identities=19% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---CCCc--cEEEecccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---~p~~--D~v~~~~vlh~ 168 (254)
.+++.+|||+|||.|.+...|.+. .+++ +.++++ ++.+..+.+ ..++++.+|+.+. +|+. |.||++.+|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 457899999999999999888775 5788 888888 554444443 4688999999886 4543 99999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhh--------hhccccCceecCHHHHHHHHHh
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV--------MTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
+ ....++|+++.|+ |.+.+|.=+... .|..+....+.=.| .+-.+++-+..|..+++++.++
T Consensus 88 ~--~~P~~vL~EmlRV---gr~~IVsFPNFg-----~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 88 V--RRPDEVLEEMLRV---GRRAIVSFPNFG-----HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred H--hHHHHHHHHHHHh---cCeEEEEecChH-----HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 7 4567888888766 555555432211 11111110000000 0001233344589999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
.|+++.+...+.+
T Consensus 158 ~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 158 LGIRIEERVFLDG 170 (193)
T ss_pred CCCEEEEEEEEcC
Confidence 9999998776543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=92.47 Aligned_cols=113 Identities=21% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C----CcEEEeCCCCCCCCCccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P----GVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~----~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.++.+|||+|||+|.++..+++..+ .+ ++++|+ +.+++.++++ . ++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence 4678999999999999988766543 36 899999 8888877654 2 233333321 24999875322
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+....+++++.+.|||||++++.+.... ..+++.+.+++.||++.+
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEE
Confidence 3456789999999999999998654211 234677888999998877
Q ss_pred EEE
Q 025363 248 LYR 250 (254)
Q Consensus 248 ~~~ 250 (254)
...
T Consensus 236 ~~~ 238 (250)
T PRK00517 236 VLE 238 (250)
T ss_pred EEE
Confidence 654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=95.61 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CC-C--ccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IP-A--ADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p-~--~D~v~~~~vl 166 (254)
+..+|||+|||+|..+..+++..|+.+ ++++|+ +.+++.++++ .+++++.+|+++. .+ . .|+|+++--.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 456999999999999999999999989 999999 8898877654 4799999999875 33 2 3999984321
Q ss_pred ccCC-----------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc
Q 025363 167 TTWT-----------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 223 (254)
Q Consensus 167 h~~~-----------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
..-+ .+-...+++.+.+.|+|||++++ |...
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~------------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF------------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc-------------------------
Confidence 1000 01134678888889999998765 3211
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
...+.+.+++++.||+.+++.
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEE
Confidence 123456788888898766543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=94.49 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=75.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEec-----
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMK----- 163 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~----- 163 (254)
.+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ .+++++.+|+++.++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 6899999999999999999999889 999999 8888777653 3599999999987654 3999884
Q ss_pred --------cccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 164 --------WVLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 164 --------~vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.++++-+. +....+++++.+.|+|||.+++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22332211 2456899999999999999876
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=90.43 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=94.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---C--ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---A--ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---~--~D~v~ 161 (254)
.....+|||+|||+|..+..+++++++++ ++++++ +++.+.|++. +||+++..|+.+..+ . .|+|+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 44588999999999999999999999999 999999 7777777653 799999999977632 2 38999
Q ss_pred eccccccCCHH----------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC
Q 025363 162 MKWVLTTWTDD----------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 162 ~~~vlh~~~~~----------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
++=-.+.-... ...++++.++++|||||++.++-..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------------------- 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------------------- 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------------------
Confidence 96554433222 2457999999999999999885421
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
-...|+.+++++.+|...++..+
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEe
Confidence 01235667777777777666544
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=97.12 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=79.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC---CCCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK---SIPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~---~~p~ 156 (254)
.+++.+. ...+..+||||||+|.++..+++++|+.. ++++|+ +.+++.+... .+|.++.+|+.. .++.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 3455553 34466899999999999999999999999 999998 7776665432 679999999843 3554
Q ss_pred c--cEEEeccccccCCHHH-----HHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 A--DAIFMKWVLTTWTDDE-----CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~--D~v~~~~vlh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ |.|++.... -|+... ...+|+.++++|+|||.+.+..
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 998875432 243221 2579999999999999998854
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=87.26 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-c-cEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-A-DAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~-D~v~~~~vl 166 (254)
..++.+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.++.+|+.+.++. . |+|++.--.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence 5567899999999999999988763 346 999999 8888765543 3578889998776543 3 999986322
Q ss_pred ccCC-------------------HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 167 TTWT-------------------DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 167 h~~~-------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+.-+ ......+++++.+.|||||++++.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2110 0124568899999999999999865433
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=86.31 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCCC-eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CCCc-cEEEec
Q 025363 96 KGVK-RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPAA-DAIFMK 163 (254)
Q Consensus 96 ~~~~-~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p~~-D~v~~~ 163 (254)
+..+ +|||+|||.|.++..|++.--... .+++|. +..++.|+.. +.|+|+..|++++ .+.. |+|+=.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 3344 999999999999999999865555 677787 6665555421 4499999999996 4444 887754
Q ss_pred ccccc------CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 164 WVLTT------WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 164 ~vlh~------~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
..+.. -........+..+.+.|+|||+++|... .+|.+|+.+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~ 192 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEE 192 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHH
Confidence 44332 2223335678899999999999988332 2578888888
Q ss_pred HHhCCCCeeeEEEcc
Q 025363 238 GFFAGFPHLRLYRVL 252 (254)
Q Consensus 238 l~~aGf~~~~~~~~~ 252 (254)
++.-||......+.+
T Consensus 193 f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 193 FENFNFEYLSTVPTP 207 (227)
T ss_pred HhcCCeEEEEeeccc
Confidence 888888877766554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-10 Score=92.44 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC-ccEEEecccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~-~D~v~~~~vl 166 (254)
.++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .++.+...+.....+. .|+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 35689999999999999887765 3446 999999 8888777653 3466666653332333 4999986443
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+....+++++++.|||||+|++...
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3346789999999999999998664
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=94.81 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CCC-ccEEEec
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA-ADAIFMK 163 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p~-~D~v~~~ 163 (254)
++..+|||||||+|.++..+++.+|+.+ ++++|+ |++++.+++. ++++++.+|..+. .++ .|+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3467899999999999999999999999 999999 9998877642 6799999998654 333 4999874
Q ss_pred ccccc--CCHH-HHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WVLTT--WTDD-ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~--~~~~-~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. ++. .+.. ...++++++++.|+|||++++.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2 221 1111 1268999999999999999985
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=95.90 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc----
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW---- 164 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~---- 164 (254)
.+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ ++|+++.+|+++.++. .|+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999999999999 999999 8888877653 4699999999877654 39999851
Q ss_pred ---------ccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 ---------VLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 ---------vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.+++.+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0111111 2246889999999999999887
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-10 Score=86.45 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=73.6
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC---------CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~---------~p~- 156 (254)
+.+.+....++.+|||+|||+|.++..+++++ +..+ ++++|+.++. ..+++.++.+|+.+. .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 33434345678899999999999999999887 4567 9999993322 235788998898763 233
Q ss_pred -ccEEEeccccc---cCC------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 -ADAIFMKWVLT---TWT------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 -~D~v~~~~vlh---~~~------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++....| .|. .+...++++.++++|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 39999853321 121 1224689999999999999999853
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=87.86 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCCCC----C-ccEEEecccc-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIP----A-ADAIFMKWVL- 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~~p----~-~D~v~~~~vl- 166 (254)
+..+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+++..+ . .|+|++.--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 346899999999999999999999888 999999 8888887764 347899999987543 2 3999874321
Q ss_pred -----ccCCHH------------------HHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 -----TTWTDD------------------ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 -----h~~~~~------------------~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+..+++ -..++++.+.+.|+|||++++.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 1347888899999999998873
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=97.58 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc--c
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW--V 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~--v 165 (254)
..+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++.+ ++++++.+|+++..+. .|+|+++- +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 46899999999999999999999999 999999 8888877653 4799999999876543 39999831 1
Q ss_pred c------------ccCC------H----HHHHHHHHHHHHhCCCCCEEEE
Q 025363 166 L------------TTWT------D----DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 166 l------------h~~~------~----~~~~~il~~~~~~L~pgG~l~i 193 (254)
- .+.+ . +-...+++++.+.|+|||.+++
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1 1111 0 1234678899999999999876
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-10 Score=87.30 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=80.4
Q ss_pred HHHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------------
Q 025363 85 MTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------------- 140 (254)
Q Consensus 85 ~~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------------- 140 (254)
.+..+..++ .|-....+|||||.+|.++..+++.+.... +.++|+ +..+..|++.
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 344444444 567789999999999999999999998878 999999 6666666542
Q ss_pred --------------------------CCcEEEeCCCCCC-CCCccEEEeccc---cc-cCCHHHHHHHHHHHHHhCCCCC
Q 025363 141 --------------------------PGVTHIGGDMFKS-IPAADAIFMKWV---LT-TWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 141 --------------------------~~i~~~~~d~~~~-~p~~D~v~~~~v---lh-~~~~~~~~~il~~~~~~L~pgG 189 (254)
.++.+..-||.+. .|..|+|+|..+ +| +|.|+....+++++++.|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 1222333445433 344588887433 34 6899999999999999999999
Q ss_pred EEEE
Q 025363 190 KLIA 193 (254)
Q Consensus 190 ~l~i 193 (254)
+|++
T Consensus 204 iLvv 207 (288)
T KOG2899|consen 204 ILVV 207 (288)
T ss_pred EEEE
Confidence 9887
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=75.59 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC------CCCCcEEEeCCCCCCC--C-C-ccEEEecccccc
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTT 168 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~------~~~~i~~~~~d~~~~~--p-~-~D~v~~~~vlh~ 168 (254)
+|+|+|||.|..+..+++ .+..+ ++++|. +.....++ ...++.+..+|+.+.. + . .|++++...++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999999988 55667 999998 66665544 1267899999998863 2 2 399999999987
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+ .+....+++.+.+.|+|||.+++.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 467789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=90.48 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=77.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
+..++... .++++.+|||+|||+|.++...+.. +.. ++++|+ +.++..++.+ ..+.+..+|+.+. .+.
T Consensus 171 a~~~~~l~-~~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 171 ARAMVNLA-RVTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHh-CCCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 44455555 3778889999999999999886654 567 999999 8888766543 3478899999875 333
Q ss_pred -c-cEEEeccccc-------cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 -A-DAIFMKWVLT-------TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 -~-D~v~~~~vlh-------~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. |+|++.--.. +...+-..++|+++++.|||||++++.-
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 3 9999842211 1111335789999999999999998854
|
This family is found exclusively in the Archaea. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-09 Score=83.76 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=84.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..++.+||+.|||.|.-+..|+++ +.. ++++|+ +..++.+.+ ..+|++.++|+|+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345689999999999999999998 556 999999 766666321 1479999999998732
Q ss_pred ------CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 ------AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ------~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
..|+|+-+.+|+.++++...+..+++.++|+|||++++.....
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1399999999999999999999999999999999988876543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.8e-09 Score=85.45 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCeEEEecCcccH----HHHHHHHHcC----CCCeEEEeec-hHHHhhCCCC----------------------------
Q 025363 98 VKRLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVAEAPSI---------------------------- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~----~~~~l~~~~~----~~~~~~~~D~-~~~~~~~~~~---------------------------- 140 (254)
..+|...||+||. .++.+.+..+ +.+ +++.|+ +.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4799999999998 3333334332 356 899998 7777766531
Q ss_pred ---------CCcEEEeCCCCCC-CC--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 ---------PGVTHIGGDMFKS-IP--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+|.|..+|..++ .| .. |+|+|++++.+++++...+++++++++|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4589999999985 43 33 99999999999999999999999999999999988854
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=85.70 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~- 156 (254)
...+++.++ ..++.+|||||||+|..+..+++... + ++.+|. +++++.++++ .++++..+|..+..+.
T Consensus 67 ~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 67 VARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcC
Confidence 334555563 67789999999999999987777653 5 888998 8887766543 4699999998776432
Q ss_pred --ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 --ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 143 ~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 3999998766543 4567889999999988543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=86.54 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=95.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..+..+||..|||.|.-+..|+++ +.+ ++++|+ +..++.+.+ ..+|++.++|+|+..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 566789999999999999999988 456 999999 777766410 0468999999999633
Q ss_pred C----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-ChhhhhhcccchHhhhhccccCceecC
Q 025363 156 A----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 156 ~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
. .|+|+=+..|+-++++...+..+.++++|+|||++++.....+.... +|+. ..+
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf--------------------~v~ 171 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF--------------------SVT 171 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------------------------
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC--------------------CCC
Confidence 2 29999999999999999999999999999999995544433332211 1211 136
Q ss_pred HHHHHHHHHhCCCCeeeEE
Q 025363 231 EQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~ 249 (254)
.+|+.+++. .+|++..+.
T Consensus 172 ~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEe
Confidence 788888888 788766554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-10 Score=86.61 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=100.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCC---CcEEE-eCCCCCC-CCC-c
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIP---GVTHI-GGDMFKS-IPA-A 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~---~i~~~-~~d~~~~-~p~-~ 157 (254)
..+.+...+ ..+..++||+|||||-....+-..-.. .+++|+ ..|++.+.++. ....- ..+|.++ -++ .
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 444555553 555789999999999999988777443 678899 88999998762 11111 1124333 223 4
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCce-ecCHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGN-HRTEQEFKQ 236 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ 236 (254)
|+|....||-.+ -....++.-+...|+|||.+.++-...+.... +++ .+..+ -.+..-+++
T Consensus 190 DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l---~ps~RyAH~~~YVr~ 251 (287)
T COG4976 190 DLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVL---GPSQRYAHSESYVRA 251 (287)
T ss_pred cchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCC-------------eec---chhhhhccchHHHHH
Confidence 999999999877 45678999999999999999987655544311 000 01111 135667889
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
+++..||++++++++.
T Consensus 252 ~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 252 LLAASGLEVIAIEDTT 267 (287)
T ss_pred HHHhcCceEEEeeccc
Confidence 9999999999988753
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=87.33 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=85.3
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcE----EEeCCCCCCCCC--
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVT----HIGGDMFKSIPA-- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~----~~~~d~~~~~p~-- 156 (254)
+.++.+ ..++.+|||+|||+|.++++.++.. ..+ ++++|+ |..++.++++ +.|+ ....+..+....
T Consensus 154 ~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLG-A~~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 154 EALEKL--LKKGKTVLDVGCGSGILAIAAAKLG-AKK-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHh--hcCCCEEEEecCChhHHHHHHHHcC-Cce-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 344444 3478999999999999999988764 335 899999 7777777765 4444 222222222222
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|+++= |- +-...+...+.+.+||||+++++-..-. -.+.+.+
T Consensus 230 ~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~ 274 (300)
T COG2264 230 FDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAE 274 (300)
T ss_pred ccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHH
Confidence 39988743 42 3456889999999999999988553211 1345677
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
.+.++||.++++..
T Consensus 275 a~~~~gf~v~~~~~ 288 (300)
T COG2264 275 AYEQAGFEVVEVLE 288 (300)
T ss_pred HHHhCCCeEeEEEe
Confidence 78888888877654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=82.54 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=97.1
Q ss_pred hhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc----CCchhHHHHHhhcCCCCCCCeEEEecCccc
Q 025363 34 SMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG----VSVPFMTSVLEGYNGFKGVKRLVDVGGSAG 109 (254)
Q Consensus 34 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~----~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G 109 (254)
.-++.|-|.+-+.. +...++.+.++|+....|+.+.+. +-..-.+.+++.+...++...|.|+|||.+
T Consensus 13 srFR~lNE~LYT~~--------s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA 84 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS--------SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDA 84 (219)
T ss_dssp HHHHHHHHHHHHS---------HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-
T ss_pred CchHHHHHhHhcCC--------HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchH
Confidence 44566666665432 112344566788888777776644 333346667777753445679999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCC
Q 025363 110 DCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALP 186 (254)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~ 186 (254)
.++..+.+ ..+ +.-+|+-.. +++ ++..|+... ++.. |++++.-.|=. .+....++++.|+||
T Consensus 85 ~la~~~~~---~~~-V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 85 KLAKAVPN---KHK-VHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK 149 (219)
T ss_dssp HHHHH--S-------EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE
T ss_pred HHHHhccc---Cce-EEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec
Confidence 99966542 245 888886321 233 556788553 4543 99887666632 355789999999999
Q ss_pred CCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 187 AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 187 pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
|||.|.|.|.... .-..+++.+.+++-||+....
T Consensus 150 ~~G~L~IAEV~SR----------------------------f~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 150 PGGILKIAEVKSR----------------------------FENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEEEEEEEEEGGG-----------------------------S-HHHHHHHHHCTTEEEEEE
T ss_pred cCcEEEEEEeccc----------------------------CcCHHHHHHHHHHCCCeEEec
Confidence 9999999886432 114456778888889987653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=89.59 Aligned_cols=98 Identities=26% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------CCCcEEEeCCCCCCCC---C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~~~i~~~~~d~~~~~p---~-~D~ 159 (254)
++..+||+||||+|..+..+++..+..+ ++++|+ +.+++.+++ .+|++++.+|..+.++ + .|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3567999999999999999997644456 999999 888887764 2689999999876532 2 399
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++...-+..+... ..++++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99854333222211 367899999999999998874
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-10 Score=79.95 Aligned_cols=95 Identities=25% Similarity=0.258 Sum_probs=72.7
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---CC--ccEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---PA--ADAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p~--~D~v~~~~v 165 (254)
.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++.. .+++++.+|+.+.. +. .|+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999998 667 999999 7776665542 67999999997652 33 399999665
Q ss_pred cccCC-H-----HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWT-D-----DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~-~-----~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+... . +....+++++.+.|||||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 55321 1 134688999999999999998753
|
... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=83.26 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC--------------------------
Q 025363 97 GVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI-------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~-------------------------- 140 (254)
+..+|...||++|. +++.+.+..+ ..+ +.+.|+ +.+++.|++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 56899999999998 3333333222 235 788999 8888887641
Q ss_pred --------CCcEEEeCCCCCC-CC-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 --------PGVTHIGGDMFKS-IP-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 --------~~i~~~~~d~~~~-~p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+|.|...|..+. .+ .. |+|+|++||-.++++...+++++++++|+|||.|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 5799999999993 33 23 99999999999999999999999999999999999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-09 Score=82.82 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC-ccEEEeccccccCCHHHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~~~~~~ 174 (254)
...++||||+|.|..+..++..+.+ +.+.+. +.|....++ ..++++..|-....+. .|+|.|.++|-.- +..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRP 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCH
Confidence 3578999999999999999998876 566677 777766655 3455554443333333 3999999999865 456
Q ss_pred HHHHHHHHHhCCCCCEEEEEccccCCC-----C--CChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 175 KLIMENCYKALPAGGKLIACEPVLPDD-----S--NESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~d~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
..+|+.++++|+|+|++++.=...-.+ . ..++.+. +++ ....-+-....+.+.|+.+||++..
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~----l~~------~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL----LPV------KGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh----cCC------CCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999988753221110 0 1111110 111 0111111234455889999999999
Q ss_pred EEEcc
Q 025363 248 LYRVL 252 (254)
Q Consensus 248 ~~~~~ 252 (254)
..++|
T Consensus 238 ~tr~P 242 (265)
T PF05219_consen 238 WTRLP 242 (265)
T ss_pred EeccC
Confidence 88765
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=84.23 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE-------eCCCCCCC--CCc-cEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI-------GGDMFKSI--PAA-DAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~-------~~d~~~~~--p~~-D~v~~~~vl 166 (254)
...++|||||+|..++.++..+.+ +++.|. +.|++.+++.++++.. ..++.+.. ++. |+|++..++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 348999999999999999888765 889999 9999999887544332 12222222 233 999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|-+ +..++.+.++|+||+.|.++.+-.+.
T Consensus 111 HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 966 34689999999998877555443333
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=87.23 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
...+++..+ .+++.+|||||||+|..+..+++..+. .. ++++|. +++++.+++. .++.++.+|..+..+.
T Consensus 69 ~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 69 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 344556664 677889999999999999999998764 46 889998 8887766542 5789999998765432
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 147 ~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999987655432 345678999999988854
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=81.90 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=71.2
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccEEEec--ccccc-
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADAIFMK--WVLTT- 168 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~v~~~--~vlh~- 168 (254)
+|||+|||+|..+..++.++|+++ +++.|+ |..++.++.+ .++.++.+|.|+..+. .|+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 899999999999999999999999 999999 9888887754 4466777799888654 4988872 22111
Q ss_pred --CC------------------HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 169 --WT------------------DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 169 --~~------------------~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.. -+-...++.++.+.|+|||.+++
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 00 02345788889999999887766
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=78.60 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=80.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
+...+++.++ .+++.+|||||||+|..+.-+++.-. + ++.+++ ++..+.++++ .+|.++.+|-..-+|+
T Consensus 60 ~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 60 MVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3455777774 89999999999999999998888754 5 888888 7777777653 5799999999887665
Q ss_pred -c--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 -A--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 -~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ |.|+.....-..++ .+.+.|||||+|++...
T Consensus 136 ~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 3 99998777665543 56677999999999665
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-09 Score=87.36 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------------CCCcEEEeCCCCCCC---CC-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSI---PA-A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------------~~~i~~~~~d~~~~~---p~-~ 157 (254)
....+||+||||+|..+..+++..+..+ ++.+|+ ++|++.++. .+|++++.+|..+.+ ++ .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3467999999999999999997654456 999999 888887763 278999999998753 22 3
Q ss_pred cEEEeccccc---cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 DAIFMKWVLT---TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 D~v~~~~vlh---~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|+|++...-. ....-...++++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999863210 011122357899999999999998875
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=84.80 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-C-ccEEEeccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-A-ADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-~-~D~v~~~~v 165 (254)
.++.+|||||||||.+++..++.. ..+ ++++|+ |..++.++++ .++.+. ...+.+ . +|+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKK-VVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVVANIL 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSE-EEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEEEES-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCe-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEEECCC
Confidence 456799999999999999887763 235 899999 8777777654 445442 122322 2 499887433
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. +-...+...+.+.|+|||+|+++-..
T Consensus 235 ~-----~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 235 A-----DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp H-----HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred H-----HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 2 45578889999999999999985543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=80.25 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC--------------------------
Q 025363 97 GVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI-------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~-------------------------- 140 (254)
...+|.-.||+||. .++.+.+..+ ..+ +++.|+ ..+++.|+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 46799999999997 5555666665 355 888999 8888887641
Q ss_pred ---------CCcEEEeCCCCCCC-C-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 ---------PGVTHIGGDMFKSI-P-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~~-p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
..|.|..+|..++. . .. |+|+|++|+-.++.+.-.+++++++..|+|||.|++..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 35899999999884 3 33 99999999999998888999999999999999999954
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=85.44 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=72.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CC-C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IP-A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p-~-~D~ 159 (254)
++..+||+||||.|.++..+++. |...+++++|+ +.+++.+++. +|++++.+|..+. .+ + .|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45789999999999999999866 55433889999 7777776542 6899999997554 32 2 499
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++-..-...+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9985433222111 1357899999999999998764
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=89.75 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCCC---CC-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSI---PA- 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~~---p~- 156 (254)
++..+|||||||+|..+..+++ ++. .+ ++.+|+ +++++.++++ +|++++.+|..+.. ++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4567999999999999999997 455 56 999999 9999887761 68999999987742 33
Q ss_pred ccEEEeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ADAIFMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++...-...+.. -..++++++++.|||||.+++.-
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 3999986432221111 12468999999999999988753
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=88.71 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=80.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC--c
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--A 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~--~ 157 (254)
++..++ ..++.+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+|+++.+|+.+..+. .
T Consensus 242 ~~~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 242 ACLLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCC
Confidence 334443 56678999999999999999888764 456 999999 8888777653 4689999998765333 3
Q ss_pred cEEEec------ccc-------ccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 158 DAIFMK------WVL-------TTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 158 D~v~~~------~vl-------h~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
|+|++- .++ ..++.++. .++|+++.+.|||||+|++.......
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999862 111 12333332 36899999999999999998876643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=88.14 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CC-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP- 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p- 155 (254)
..++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+.+. .+
T Consensus 234 ~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 33445564 66788999999999999999999987777 999999 8888777654 2478899998764 12
Q ss_pred C-ccEEEecc------cc-------ccCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 A-ADAIFMKW------VL-------TTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 ~-~D~v~~~~------vl-------h~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. .|.|++.- ++ +....++ ..++|+++.+.|||||+|++......
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2 39998422 11 1122222 24799999999999999998876554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=81.18 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A- 156 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~- 156 (254)
..+..+|||||||+|..+..+++..+ +.+ ++.+|. ++..+.++++ ++|+++.+|+.+.++ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 34578999999999999999999875 567 999999 8877776653 689999999977421 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++-. ..+.-..++..+.+.|+|||.+++-+..+
T Consensus 145 fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 145 FDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 39998732 23455688999999999999877755444
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-09 Score=83.04 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=75.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p 155 (254)
....+++.++ .+++.+|||||||+|..+.-++.... ... ++.+|. +...+.++++ .+|.++.+|.....+
T Consensus 60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 3556778885 89999999999999999999998764 335 788898 8888777654 579999999877654
Q ss_pred C-c--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A-A--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~-~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. + |.|++.......+ ..+.+.|++||+|++.-.
T Consensus 138 ~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 4 3 9999988776443 356777999999998443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=84.84 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
...+||+||||+|..+..+++..+..+ ++++|+ +.+++.+++. ++++++.+|..+.+ ++ .|+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999999999999999988765556 899998 7787766542 57888888876642 33 39999
Q ss_pred eccccccCCHHH--HHHHHHHHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 194 (254)
+......-+... ..++++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865432222222 468899999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=79.64 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred HHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC------
Q 025363 73 MRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI------ 140 (254)
Q Consensus 73 ~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~------ 140 (254)
|...|...+..+ +..|+... +..++.+|+|.|.|+|.++..|++. .|..+ ++.+|. ++..+.|+++
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcc
Confidence 334466655543 45577777 4999999999999999999999985 56678 999998 8888777764
Q ss_pred -CCcEEEeCCCCCC-CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 141 -PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 141 -~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++|++..+|+.+. .++ .|+|++ ++++ .-+++.++.++|+|||.+++.-+..+
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 5699999999888 343 399887 4543 46899999999999999999776554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=88.18 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=79.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p 155 (254)
.+...++ ..++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+|+++.+|+.+. ++
T Consensus 241 lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 241 LVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 3445553 5677899999999999999999986 5667 999999 8877766543 4589999998764 23
Q ss_pred C-ccEEEecc------ccc-------cCCHHH-------HHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 A-ADAIFMKW------VLT-------TWTDDE-------CKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ~-~D~v~~~~------vlh-------~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|+|++.- ++. .++..+ ..++|+++.+.|||||+|+......
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 3 39998732 111 112222 2468999999999999999766544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=87.76 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C-CcEEEeCCCCCC-C-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKS-I- 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~-~i~~~~~d~~~~-~- 154 (254)
...++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +++++.++++ . ++.+..+|.... .
T Consensus 227 s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 227 AQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 344555664 66788999999999999999999888778 999999 8888776543 1 234466776543 1
Q ss_pred -CC--ccEEEe------ccccccCCH-------HH-------HHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 155 -PA--ADAIFM------KWVLTTWTD-------DE-------CKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 155 -p~--~D~v~~------~~vlh~~~~-------~~-------~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+. .|.|++ ..+++..++ ++ -.++|+++.+.|||||+|++....+..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 22 399985 234544332 11 357999999999999999998877653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-08 Score=82.94 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCccc--HHHHHHHH-HcCCCCeEEEeec-hHHHhhCCCC----CC--cEEEeCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAG--DCLRMILQ-KHRFICEGINFDL-PEVVAEAPSI----PG--VTHIGGDMFKS- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G--~~~~~l~~-~~~~~~~~~~~D~-~~~~~~~~~~----~~--i~~~~~d~~~~- 153 (254)
....++.+-.-.+-...||||||-- ....++++ ..|+.+ ++.+|. |-++..++.. ++ ..++.+|+.++
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 3344444421225679999999943 34455555 478999 999999 7777766542 44 88999999887
Q ss_pred --CC--C--c--c-----EEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh
Q 025363 154 --IP--A--A--D-----AIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM 219 (254)
Q Consensus 154 --~p--~--~--D-----~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
+. + . | .+++..+||+++| ++...+++.++..|.||++|+|........ +.... ....+...
T Consensus 135 ~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~~--~~~~~~~~ 209 (267)
T PF04672_consen 135 AILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERAE--ALEAVYAQ 209 (267)
T ss_dssp HHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHHH--HHHHHHHH
T ss_pred HHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHHH--HHHHHHHc
Confidence 22 2 1 4 5788999999987 789999999999999999999998875432 11111 11112111
Q ss_pred hccccCceecCHHHHHHHHHhCCCCeee
Q 025363 220 TIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 220 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
. ......||.+|+.++|. ||+.++
T Consensus 210 ~--~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 A--GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp C--CS----B-HHHHHHCCT--TSEE-T
T ss_pred C--CCCceecCHHHHHHHcC--CCccCC
Confidence 1 23456789999999986 777653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=75.88 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+++.++ ..++.+|||||||+|.++..++++ ..+ ++++|. +.+++.+++. ++++++.+|+.+. .+.
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 345667774 777889999999999999999988 456 999998 7777766543 5799999999886 444
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHh--CCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKA--LPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~--L~pgG~l~i~d~ 196 (254)
.|.|+..--.| .+. .++.++.+. +.++|.+++...
T Consensus 78 ~d~vi~n~Py~-~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 78 PYKVVGNLPYN-IST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCEEEECCCcc-cHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 38877654444 333 344444433 346777766543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.4e-08 Score=76.58 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=82.0
Q ss_pred cccccccCchHHHHHHHHHhcCCc----hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHH
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSV----PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 134 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~ 134 (254)
.+..+.++|+....|+.+....-. .-.+.|++.+...+....|.|+|||.+.++.. . .-. +.-+|+-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~--~~k-V~SfDL~a~- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---E--RHK-VHSFDLVAV- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---c--ccc-eeeeeeecC-
Confidence 344566788888888776654322 33566777665445678899999999998862 1 123 777886332
Q ss_pred hhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 135 AEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 135 ~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+.+ ++..|+.+. +++. |++++...|-. .+...++++++|+|+|||.|+|.|..
T Consensus 211 -----~~~--V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 211 -----NER--VIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -----CCc--eeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh
Confidence 133 455677664 4432 88776544432 45678999999999999999998864
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-08 Score=91.61 Aligned_cols=95 Identities=18% Similarity=0.078 Sum_probs=71.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------------CCcEEEeCCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------------------PGVTHIGGDMFKSI 154 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------------------~~i~~~~~d~~~~~ 154 (254)
+.+|||+|||+|..+..+++++|+.+ ++++|+ +.+++.++.+ +||+|+.+|+++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999999888 999999 8887766322 37999999999875
Q ss_pred CC----ccEEEec--ccccc----CC------------------------------HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 155 PA----ADAIFMK--WVLTT----WT------------------------------DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 155 p~----~D~v~~~--~vlh~----~~------------------------------~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+. .|+|+.+ ++... ++ -+-..++++++.+.|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 32 3888862 22110 00 01125788888899999998775
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-08 Score=85.54 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC---
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI--- 154 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~--- 154 (254)
..+...++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+|+++.+|+.+..
T Consensus 242 ~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 242 QLVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 33445553 66788999999999999999999864 457 999998 8888776653 46899999986542
Q ss_pred ---CC-ccEEEec------cccccCCH-------HH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 155 ---PA-ADAIFMK------WVLTTWTD-------DE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 155 ---p~-~D~v~~~------~vlh~~~~-------~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++ .|.|++. .+++.-++ ++ -.++|+++.+.|||||+|+.....+.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12 3999862 24443222 22 35889999999999999998876554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-08 Score=85.32 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=86.4
Q ss_pred HHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcE
Q 025363 73 MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVT 144 (254)
Q Consensus 73 ~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~ 144 (254)
|..+...........+...++ ..++.+|||+|||+|..+..+++.. +..+ ++.+|+ +.+++.++++ .+++
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~ 291 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIE 291 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEE
Confidence 444333333333333444553 6678899999999999999999986 3567 999999 8888777653 4588
Q ss_pred EEeCCCCCCC---CC-ccEEEec------cccc-------cCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 145 HIGGDMFKSI---PA-ADAIFMK------WVLT-------TWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 145 ~~~~d~~~~~---p~-~D~v~~~------~vlh-------~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
++.+|..+.. ++ .|.|++. .++. .++.++ -.++|.++.+.|||||+|+.....+..
T Consensus 292 ~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 292 IKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred EEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 9999986531 23 3998861 1222 122221 257899999999999999988776653
Q ss_pred C
Q 025363 201 D 201 (254)
Q Consensus 201 ~ 201 (254)
.
T Consensus 372 e 372 (431)
T PRK14903 372 E 372 (431)
T ss_pred h
Confidence 3
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=70.10 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=90.1
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC-CCCcEEEeCCCCCC---CC-
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS-IPGVTHIGGDMFKS---IP- 155 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~-~~~i~~~~~d~~~~---~p- 155 (254)
..++.+....+ +..+.-|||+|.|||.++.+++++. ++.. .+.++. ++......+ .+.++++.||.+.. ..
T Consensus 35 ~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 35 ILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 34555666664 8889999999999999999999984 4445 677777 776655443 47888999999875 22
Q ss_pred --C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 --A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 --~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. .|.|++.--+-.++.....++|+++...|++||.++-....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 29999999888899999999999999999999998876654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-08 Score=79.45 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
+..|+..++ ..++.+|||.|.|+|.++..|++.. |..+ +.-+|. ++..+.++++ .+|++...|+.+. +
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 344677774 8999999999999999999999864 7777 899998 7777776653 6799999999765 4
Q ss_pred C----C-ccEEEeccccccCCHHHHHHHHHHHHHhC-CCCCEEEEEcccc
Q 025363 155 P----A-ADAIFMKWVLTTWTDDECKLIMENCYKAL-PAGGKLIACEPVL 198 (254)
Q Consensus 155 p----~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L-~pgG~l~i~d~~~ 198 (254)
+ . .|.|++ ++++. -.++..+.++| +|||++++.-+.+
T Consensus 107 ~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 2 398887 44433 47789999999 8999999865543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=78.61 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-C--CCccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-I--PAADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~--p~~D~v~~~ 163 (254)
..++.+|||+|||+|..+..+++...+ .. ++++|. +.+++.++++ .+|.+...|.... . +..|+|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 567889999999999999999988753 46 999999 8887766543 4688888887543 1 224998862
Q ss_pred c------ccc-------cCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 164 W------VLT-------TWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 164 ~------vlh-------~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
- ++. .|++++. .++|+++.+.|||||+|+.....+..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 111 2333333 46999999999999999987766543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=74.83 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCeEEEecCcccHHHHHHHHHc---CCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-ccEEEeccccccCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT 170 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~---~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~ 170 (254)
..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.++.. .++.++.+|+... .+. .|+|+++=-++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 5799999999999999999875 3557 999999 8888888765 6799999999765 333 39999865444221
Q ss_pred --H--------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 171 --D--------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 171 --~--------~~~~~il~~~~~~L~pgG~l~i 193 (254)
+ .-...+++++.++++||+ +++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 1 124568889998666665 444
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-08 Score=77.26 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=67.5
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------CCCcEEEeCCCCCC----CCC-c-cEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA-A-DAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------~~~i~~~~~d~~~~----~p~-~-D~v~~~~v 165 (254)
..+||||||.|.++..+++.+|+.. ++++|. ...+..+.. ..++.++.+|+... ++. . |-|++.+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3889999999999999999999999 999998 655554432 27899999998873 343 3 66555221
Q ss_pred cccCCHH-------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDD-------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
== |+.. -...+|+.++++|+|||.|.+..
T Consensus 98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DP-WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 00 1110 12479999999999999998854
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-08 Score=81.06 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=70.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------CCcEEEeCCCCCC-C----
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------------PGVTHIGGDMFKS-I---- 154 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------------~~i~~~~~d~~~~-~---- 154 (254)
++.+|||+|||.|.-+...... ++...+++|+ +..++.++++ -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6789999999998877777666 3333799998 6666666542 1356788888765 1
Q ss_pred -CC--c-cEEEecccccc-C-CHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 155 -PA--A-DAIFMKWVLTT-W-TDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 155 -p~--~-D~v~~~~vlh~-~-~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. . |+|-+...+|. + +.+.+..+|+++.+.|+|||+++..-
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22 3 99999999996 3 45678889999999999999998753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.2e-07 Score=74.16 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A- 156 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~- 156 (254)
..+.++|||||+++|..+..+++..| +.+ ++.+|. ++..+.+++. ++|+++.||+.+.++ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45578999999999999999999876 556 888998 7777666543 689999999877532 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.|+|++-. +..+-...++.+.+.|+|||.+++-+..+.
T Consensus 195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 39988733 345677899999999999999887555443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=73.23 Aligned_cols=112 Identities=19% Similarity=0.337 Sum_probs=69.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------------~~~i~~~~~ 148 (254)
...+++.+. ..+...++|||||.|......+..++--+ ++++++ +...+.+.. ..++++..+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344566663 77888999999999999998887776545 888887 654433321 156889999
Q ss_pred CCCCC-C-----CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 149 DMFKS-I-----PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 149 d~~~~-~-----p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
||.+. . .++|+|++++... + ++...-|.+....||||.+++......+..
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred CccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 99875 2 3469999988764 3 455566688888999999988877666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=72.42 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=66.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCC-----C-C-cc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSI-----P-A-AD 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~-----p-~-~D 158 (254)
...+.+|||+|||+|..++.+++..+..+ ++..|.+++++..+. ..++.+...|..++. + . .|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 44578999999999999999998866667 899998556554432 167889998887642 2 2 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+|+.+.++++ ++....+++.+.++|+|+|.+++.....
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999985 4677899999999999999877765443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-08 Score=75.95 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---------Cc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------AA 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------~~ 157 (254)
.+..+|||||+++|..+..+++..| +.+ ++.+|. |+..+.+++. .+|+++.+|..+.++ ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3478999999999999999999987 567 999998 7777766543 689999999976422 13
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++-. ...+-...++.+.+.|+|||.+++-+..+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 9999844 334556889999999999999888665543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-07 Score=74.82 Aligned_cols=108 Identities=21% Similarity=0.305 Sum_probs=78.3
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------CCcEEEeCC
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------------PGVTHIGGD 149 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------~~i~~~~~d 149 (254)
++-..++..| .++...++|+|||-|.-+...-++ ++...+++|+ +--+.+++.+ -.+.|+++|
T Consensus 105 wIKs~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D 180 (389)
T KOG1975|consen 105 WIKSVLINLY--TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD 180 (389)
T ss_pred HHHHHHHHHH--hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence 3334455555 466778999999999988877766 3323789999 4445556543 136788888
Q ss_pred CCCC-----C----CCccEEEecccccc-CC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 150 MFKS-----I----PAADAIFMKWVLTT-WT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 150 ~~~~-----~----p~~D~v~~~~vlh~-~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-+.. + |..|+|-+..++|. |. .+.+.-+|+++.+.|||||.++-.
T Consensus 181 c~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 181 CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred cchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 8764 2 12499999999995 44 567889999999999999988753
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-07 Score=71.69 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEe-CCCCCCCC----C-ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIG-GDMFKSIP----A-ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~-~d~~~~~p----~-~D~ 159 (254)
.++.++|||||.+.|..+..++...| +.+ .+-+|. |+..+.++++ ++|.+.. +|..+.+. + .|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 45789999999999999999999999 777 899999 8888888764 6788888 57766532 2 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|++-. ...+-.+.|..+.+.|+|||.+++-+...+
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 99833 445567899999999999998777555444
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-07 Score=71.55 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=74.3
Q ss_pred hHHHHHhhcCCCCC--CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCC--Cc
Q 025363 84 FMTSVLEGYNGFKG--VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP--AA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p--~~ 157 (254)
..+..++.++ .++ ..-|||||||+|-.+..+.+.. .. .+++|+ |+|++.+.+. -.-.++.+||-+.+| .+
T Consensus 36 m~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpG 111 (270)
T KOG1541|consen 36 MAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPG 111 (270)
T ss_pred HHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCC
Confidence 4445555553 544 6789999999999998877663 45 799999 9999998763 113477788887643 33
Q ss_pred --cEEEeccccc---------cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 --DAIFMKWVLT---------TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 --D~v~~~~vlh---------~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|-+|.-..+. |.+......++..++.+|++|++-++.
T Consensus 112 tFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 112 TFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 7666533321 223344566788899999999997763
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=70.50 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCC----CCCC--Cc--cEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMF----KSIP--AA--DAI 160 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~----~~~p--~~--D~v 160 (254)
.+..|||+|||+|..+..++...|+.+ ++++|. +..+..+.++ +++..+..++. .+-+ .+ |++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 345799999999999999999999999 999998 7676666554 77887754444 3322 23 777
Q ss_pred Eec--ccccc-C----------C-----------HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMK--WVLTT-W----------T-----------DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~--~vlh~-~----------~-----------~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+++ ++.++ + . .+....++.-+.|.|+|||.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 762 34332 0 0 012334677788999999988773
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=71.86 Aligned_cols=92 Identities=12% Similarity=0.208 Sum_probs=64.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~ 157 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++.+ . ++++|. +.+++.++.. ++++++.+|+.+. .+..
T Consensus 17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~ 92 (253)
T TIGR00755 17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDF 92 (253)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHc
Confidence 4566777664 77788999999999999999999975 4 888888 7777666542 6799999999876 4433
Q ss_pred c--EEEeccccccCCHHHHHHHHHHHHH
Q 025363 158 D--AIFMKWVLTTWTDDECKLIMENCYK 183 (254)
Q Consensus 158 D--~v~~~~vlh~~~~~~~~~il~~~~~ 183 (254)
| .+++++.-++++ ..++.++..
T Consensus 93 d~~~~vvsNlPy~i~----~~il~~ll~ 116 (253)
T TIGR00755 93 PKQLKVVSNLPYNIS----SPLIFKLLE 116 (253)
T ss_pred CCcceEEEcCChhhH----HHHHHHHhc
Confidence 4 333444433343 344555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-07 Score=75.85 Aligned_cols=96 Identities=20% Similarity=0.166 Sum_probs=71.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCCC---C-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIP---A-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~p---~-~D~v~ 161 (254)
..++||.||+|.|..+..+++..+..+ ++++|+ +.+++.+++. +|++++.+|..+.+. + .|+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 467999999999999999998665556 999999 8888877642 689999999887632 2 39999
Q ss_pred eccccccCCH--H---HHHHHHH-HHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTD--D---ECKLIME-NCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~--~---~~~~il~-~~~~~L~pgG~l~i~ 194 (254)
+-. ..-+.. . -..++++ .+++.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 852 111100 0 1246787 899999999998764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=73.01 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=91.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEe----CCCCCCC--CC--ccE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIG----GDMFKSI--PA--ADA 159 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~----~d~~~~~--p~--~D~ 159 (254)
...++||||||+|.....++.+.++++ ++++|+ +..++.++.. .+|++.. .++++.+ +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 468999999999999888888888889 999999 8777777643 3677653 2334332 22 399
Q ss_pred EEeccccccCCHHH---HHHHHHHH----------------HHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh
Q 025363 160 IFMKWVLTTWTDDE---CKLIMENC----------------YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT 220 (254)
Q Consensus 160 v~~~~vlh~~~~~~---~~~il~~~----------------~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
|+++=-+|.-..+. ...-.+++ .+++.+||.+-++..+..+... ......+...|
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~----~~~~~gwftsm-- 266 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKA----FAKQVLWFTSL-- 266 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHH----HHhhCcEEEEE--
Confidence 99988877533221 11112222 2445578887776666554310 00001111111
Q ss_pred ccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 221 IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 221 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
-|+.-+...+.+.|++.|.+.+.+..+
T Consensus 267 ----v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 ----VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred ----eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 145568999999999999977766553
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=73.74 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC----CCCeEEEeec-hHHHhhCCC------CCCcEE--EeCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR----FICEGINFDL-PEVVAEAPS------IPGVTH--IGGDMF 151 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~~D~-~~~~~~~~~------~~~i~~--~~~d~~ 151 (254)
...|++.+ .+...|+|+|||+|.=+..|+++.. ..+ .+.+|+ .+.++.+.. .+.+++ +.+|+.
T Consensus 67 ~~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 44555544 3566899999999998888777763 356 789998 566655432 255666 778886
Q ss_pred CC---CC-----Cc-cEE-EeccccccCCHHHHHHHHHHHHH-hCCCCCEEEEE
Q 025363 152 KS---IP-----AA-DAI-FMKWVLTTWTDDECKLIMENCYK-ALPAGGKLIAC 194 (254)
Q Consensus 152 ~~---~p-----~~-D~v-~~~~vlh~~~~~~~~~il~~~~~-~L~pgG~l~i~ 194 (254)
+. ++ .. .++ ++...+.+++++++..+|+++++ .|+||+.|+|.
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 64 22 12 454 45679999999999999999999 99999998884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=72.60 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=75.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEEEe
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v~~ 162 (254)
.++||-||+|.|.++.++++..+-.+ ++.+|+ |.+++.+++. +|++.+..|..+.+ +. .|+|++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 36999999999999999999988667 999999 8898887753 78999999988763 33 499998
Q ss_pred ccccccCCHH---HHHHHHHHHHHhCCCCCEEEEE
Q 025363 163 KWVLTTWTDD---ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-..=.. .+. -...+++.|+++|+|+|.++..
T Consensus 156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 443221 110 0258999999999999999886
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=70.16 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=68.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC-c-cEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA-A-DAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~-~-D~v~~~~v 165 (254)
..+||||||.|.+...+++++|+.. +++++. ...+..+... +++.++++|+.+- +++ . |-|.+..-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999 999998 5554444321 4889999998664 344 2 55554221
Q ss_pred cccCCHHH-------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDDE-------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~~-------~~~il~~~~~~L~pgG~l~i~d 195 (254)
= =|+... ....|+.+.+.|+|||.|.+..
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 0 022110 2368999999999999998854
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=71.67 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=58.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCCc-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~~- 157 (254)
+.+.+++.++ ..++.+|||||||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+. .+..
T Consensus 30 i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 30 ILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 3455666664 67788999999999999999999975 6 999998 8888877653 5899999999875 3332
Q ss_pred -cEEEec
Q 025363 158 -DAIFMK 163 (254)
Q Consensus 158 -D~v~~~ 163 (254)
|.|+.+
T Consensus 106 ~~~vv~N 112 (272)
T PRK00274 106 PLKVVAN 112 (272)
T ss_pred cceEEEe
Confidence 555543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=68.82 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=65.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---C-ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---A-ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---~-~D~v~~~~ 164 (254)
.++.+|||+|||+|.++..++.+.. .+ ++.+|. +..++.++++ .+++++.+|+++.++ . .|+|++.=
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 3467999999999999997666643 46 999998 7777665543 478999999876532 2 49999865
Q ss_pred ccccCCHHHHHHHHHHHHH--hCCCCCEEEEEc
Q 025363 165 VLTTWTDDECKLIMENCYK--ALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~d 195 (254)
-.+.- -..++++.+.+ .|+|++.+++..
T Consensus 130 Py~~g---~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRKG---LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCC---hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 54321 12345555555 478988776653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=71.68 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=62.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~ 157 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++..
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 4566777664 6678899999999999999999984 46 899998 7777766542 6799999999875 5555
Q ss_pred cEEEeccccc
Q 025363 158 DAIFMKWVLT 167 (254)
Q Consensus 158 D~v~~~~vlh 167 (254)
|.|+++--.+
T Consensus 93 d~Vv~NlPy~ 102 (258)
T PRK14896 93 NKVVSNLPYQ 102 (258)
T ss_pred eEEEEcCCcc
Confidence 8887755543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=76.48 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=70.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI-- 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~-- 154 (254)
+.+.+++.++ ..++.+|||+|||+|.++..+++.. .+ ++++|. +++++.++++ .+++|+.+|+.+.+
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3445555553 5567899999999999999999885 46 999999 8888877653 46999999987542
Q ss_pred ---C-C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 155 ---P-A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 155 ---p-~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+ . .|+|++.--- .....+++.+.+ ++|++.+++
T Consensus 361 ~~~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 361 QPWALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEE
Confidence 1 2 3998873221 122345566655 588877666
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-07 Score=79.71 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred cccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCC---CCCCeEEEecCcccHHHHHHHHHc----CCCCeEEEeec-
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGF---KGVKRLVDVGGSAGDCLRMILQKH----RFICEGINFDL- 130 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~----~~~~~~~~~D~- 130 (254)
.|+.+++|+..-..|.+++.. .+.+..... .....|+|||||+|.++...+++. ...+ +.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 356667777766667666543 222222111 135789999999999998777664 2345 888886
Q ss_pred hHHHhhC----CC---CCCcEEEeCCCCCC-CCC-ccEEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEE
Q 025363 131 PEVVAEA----PS---IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 131 ~~~~~~~----~~---~~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~ 192 (254)
+...... +. .++|+++.+|+.+- .|+ +|+|+.-.. -.+.+ +-..+.|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433221 11 17899999999887 676 499986332 11111 334466888899999998654
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=67.92 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=72.4
Q ss_pred HHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC----------------CCcEEE
Q 025363 87 SVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI----------------PGVTHI 146 (254)
Q Consensus 87 ~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~----------------~~i~~~ 146 (254)
.+++.++ ++.++.+.||||+|+|.++..++... ++.. .+++|. |++++-++++ .++.++
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 3444442 57889999999999999999888653 3333 377887 8877766542 568889
Q ss_pred eCCCCCCCCC---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 147 GGDMFKSIPA---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 147 ~~d~~~~~p~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.||-..-.++ .|.|.+... +.++.+++-..|+|||+++|.
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 9998776443 399988633 245677888889999999984
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=82.05 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC---CC-ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI---PA-ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~---p~-~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++. ...+ ++.+|. +.+++.++++ .+++++.+|+++.+ +. .|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 4689999999999999999986 2336 999999 8888877653 37899999987753 33 3999983
Q ss_pred cc--c------ccCC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WV--L------TTWT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~v--l------h~~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-- - ..+. ...-..+++.+.+.|+|||.|++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11 0 0010 133467889999999999998774
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=70.64 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---------C-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------A- 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------~- 156 (254)
.+.++|||||+++|..+..+++..| +.+ ++.+|. ++..+.+++. ++|+++.||+.+.++ +
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3478999999999999999999875 667 888998 7766665542 789999999877532 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++-. ....-...++.+.+.|+|||.+++-+..+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 39988843 34556788999999999999977744443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=70.43 Aligned_cols=112 Identities=17% Similarity=0.318 Sum_probs=77.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEE--EeCCCCC---CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTH--IGGDMFK---SI 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~--~~~d~~~---~~ 154 (254)
..++....+.|. ..+|||+|+|+|..+-++.+.++....++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 444554454343 458999999999999888888885544788998 7777655432 11110 0111221 12
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+..|+|+++++|..+++++..++++++.+.+.+ .|+++|+-.+
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 334999999999999888888999999888876 9999997554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=73.82 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=69.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC------CC-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI------PA-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~------p~-~D~ 159 (254)
.++.+|||+|||+|.++...+.. ...+ ++.+|. +.+++.++++ .+++++.+|+++.+ .. .|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34689999999999998876643 3346 999999 8888776653 26889999998752 12 399
Q ss_pred EEeccccccCCH-------HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVLTTWTD-------DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vlh~~~~-------~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.--...-+. ..-..+++.+.+.|+|||.|+.+..
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998522111111 1234566778999999999988553
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=62.87 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCC-----ccEEEeccccccCCH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-----ADAIFMKWVLTTWTD 171 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~-----~D~v~~~~vlh~~~~ 171 (254)
..++|||||=+...... .++-.. ++.+|+-+. .+. +...||++- +|. .|+|.++.||..+++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fd-vt~IDLns~------~~~--I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFD-VTRIDLNSQ------HPG--ILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCcee-eEEeecCCC------CCC--ceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 37999999864443332 234445 788887321 122 456788885 652 299999999999984
Q ss_pred -HHHHHHHHHHHHhCCCCCE-----EEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCe
Q 025363 172 -DECKLIMENCYKALPAGGK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPH 245 (254)
Q Consensus 172 -~~~~~il~~~~~~L~pgG~-----l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 245 (254)
.+.-+.++++++.|+|+|. |+++-+ .+ |..+.+..+.+.|.++++.-||..
T Consensus 120 p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~--------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LP--------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcceEEEEeC---ch--------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 5677999999999999999 766532 11 344667789999999999999998
Q ss_pred eeEEE
Q 025363 246 LRLYR 250 (254)
Q Consensus 246 ~~~~~ 250 (254)
++...
T Consensus 177 ~~~~~ 181 (219)
T PF11968_consen 177 VKYKK 181 (219)
T ss_pred EEEEe
Confidence 87643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.1e-06 Score=59.23 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccH-HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC----CccE
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADA 159 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p----~~D~ 159 (254)
+.+.+.++ -..+.+|+|||||+|. .+..|.+. +.. ++++|. |..++.+++ ..++++..|.|++-+ ++|+
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCE
Confidence 34555553 3446899999999996 77777755 456 999999 887777765 468899999999833 2499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|.... ++.+...-+-++++.. |.-++|.
T Consensus 81 iysir-----pp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 81 IYSIR-----PPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred EEEeC-----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 98754 4566666666777665 4445553
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.4e-07 Score=72.68 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------C-------------------------C
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------I-------------------------P 141 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------~-------------------------~ 141 (254)
++.++||||+|+-.+ .++.+.+..+.++..|. +.-.+..++ . .
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467999999998554 34444444433666776 433321110 0 1
Q ss_pred CcE-EEeCCCCCC--C------CC-ccEEEeccccccCC--HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhh
Q 025363 142 GVT-HIGGDMFKS--I------PA-ADAIFMKWVLTTWT--DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTR 209 (254)
Q Consensus 142 ~i~-~~~~d~~~~--~------p~-~D~v~~~~vlh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~ 209 (254)
.|+ ++..|..++ + |. +|+|++..+|...+ .++-.+.++++.++|||||.|++....-...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-------- 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-------- 205 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------
Confidence 243 566777765 2 33 59999999887533 4567899999999999999999977643210
Q ss_pred hcccchHhhhhccccCce-----ecCHHHHHHHHHhCCCCeeeEE
Q 025363 210 ALLEGDIFVMTIYRAKGN-----HRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-----~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
+ ..+++ ..+.+.+++.|+++||.+.+..
T Consensus 206 --Y----------~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 206 --Y----------MVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --E----------EETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred --E----------EECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 0 11222 2488999999999999988776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-06 Score=67.35 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=67.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCCCC-ccEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIPA-ADAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~p~-~D~v~~ 162 (254)
.+..++||=||||-|..++++++. |. + ++.+|+ ++|++.+++. +|++++.. +.+...+ .|+||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence 345789999999999999999987 43 7 999999 8888877762 78888762 2221223 499998
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-... + ....+.++++|+|||.++..
T Consensus 146 Ds~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 LQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred cCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 6431 1 36779999999999998884
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-06 Score=68.45 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=65.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------CCCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------~~~i~~~~~d~~~~-~ 154 (254)
+.+.+++..+ ..++.+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. .
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 4556777664 7778899999999999999999874 45 899998 777776553 25799999999875 4
Q ss_pred CCccEEEeccccccCCHHHHHHHH
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIM 178 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il 178 (254)
+..|+|+.+ .-.+++.+-..++|
T Consensus 100 ~~~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 100 PYFDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cccCEEEec-CCcccCcHHHHHHH
Confidence 545877753 33445544444444
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=62.26 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC---CCCc--cEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS---IPAA--DAI 160 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~---~p~~--D~v 160 (254)
.+.+.+|||...|-|.+++..+++.. .. ++-++- |.+++.+.-+ .+|+.+.||..+- +++. |+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 35688999999999999999998842 14 666665 8888777654 4689999999875 4443 887
Q ss_pred Eec-cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 161 FMK-WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 161 ~~~-~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
+-- --|..-..=...++-++++|+|||||+|+=.-.. +.. .....| -+....+.|+
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~---Pg~------ryrG~d--------------~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN---PGK------RYRGLD--------------LPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC---CCc------ccccCC--------------hhHHHHHHHH
Confidence 631 0111111224568899999999999998642211 110 001111 2456788999
Q ss_pred hCCCCeeeEEE
Q 025363 240 FAGFPHLRLYR 250 (254)
Q Consensus 240 ~aGf~~~~~~~ 250 (254)
++||.+++...
T Consensus 267 ~vGF~~v~~~~ 277 (287)
T COG2521 267 RVGFEVVKKVR 277 (287)
T ss_pred hcCceeeeeeh
Confidence 99999776543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=64.44 Aligned_cols=136 Identities=20% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHh-hCCCCCCcE-EEeCCCCCC----C-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVA-EAPSIPGVT-HIGGDMFKS----I-PA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~-~~~~~~~i~-~~~~d~~~~----~-p~ 156 (254)
...+++.++...++.++||+|||+|.++..+++. +..+ ++++|. +.++. ..+..+++. +...|+... + ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 4456666542246779999999999999999987 3345 999999 64554 455556654 333343311 1 11
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE-EccccCCCCCChhhhhhcccchHhhhhccccCcee----
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA-CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH---- 228 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 228 (254)
.|+++++.. .+|..+.++|+| |.+++ ..+-+.- .+. .. ..+|-.
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~---~~~--------~~------~~~giv~~~~ 192 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEA---GRE--------KK------NKKGVVRDKE 192 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhh---cHh--------hc------CcCCeecCHH
Confidence 266555432 358899999999 65553 3222111 110 00 011222
Q ss_pred ---cCHHHHHHHHHhCCCCeeeEEE
Q 025363 229 ---RTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 229 ---~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
.-.+++...+.+.||++..+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 193 AIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 2456777888889998877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.5e-06 Score=67.77 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~ 157 (254)
+.+++....| .++-|||||||+|.++...+++. ++.+.+++..+|.+-+++. +||.++.|.+.+- +|+.
T Consensus 167 ~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 167 RAILENHSDF-QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHHHhccccc-CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 4455433223 35789999999999998777763 3327888877777666542 7999999999886 8885
Q ss_pred -cEEEe---ccccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 158 -DAIFM---KWVLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 158 -D~v~~---~~vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
|++|. ...|. +..-.+. --..++.|||.|+++
T Consensus 244 ~DviISEPMG~mL~--NERMLEs-Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 244 VDVIISEPMGYMLV--NERMLES-YLHARKWLKPNGKMF 279 (517)
T ss_pred ccEEEeccchhhhh--hHHHHHH-HHHHHhhcCCCCccc
Confidence 99986 33332 2333333 335679999999876
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-06 Score=70.27 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p~--~D~ 159 (254)
+...+||=||+|.|..+..+++..+..+ ++++|+ |.+++.+++. +|++++.+|.... .++ .|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3578999999999999999987665556 999999 8888877642 6899999998765 334 499
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++-..--..+.. -..++++.++++|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9873322111111 13589999999999999988855
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-06 Score=74.00 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=64.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEe---ec-hHHHhhCCCCCCcEEEeCCCCC---CCCC-c-cEEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINF---DL-PEVVAEAPSIPGVTHIGGDMFK---SIPA-A-DAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~---D~-~~~~~~~~~~~~i~~~~~d~~~---~~p~-~-D~v~~~~vlh~ 168 (254)
-..+||||||+|.++..++++. +. ..-+ |. +..+.-+.++ .|.-.-+-+.+ ++|. + |+|.++.++..
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~--V~-t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERN--VT-TMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred eEEEEeccceeehhHHHHhhCC--ce-EEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 4678999999999999999984 22 2111 22 2233333322 13222222212 2454 3 99999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|...+ .-+|-++-|+|+|||+++..-+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98765 4689999999999999998766544
|
; GO: 0008168 methyltransferase activity |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-06 Score=65.97 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=76.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC--ccEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAI 160 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~--~D~v 160 (254)
..++++.. ..+..++|+|||.|.+... +|.+. .++.|+ ...+..++..+.......|+... .++ .|..
T Consensus 36 v~qfl~~~---~~gsv~~d~gCGngky~~~----~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 36 VRQFLDSQ---PTGSVGLDVGCGNGKYLGV----NPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred HHHHHhcc---CCcceeeecccCCcccCcC----CCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc
Confidence 34444443 3477899999999988753 47777 899999 66666665544436777888876 333 3999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMKWVLTTWTDD-ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~~vlh~~~~~-~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+...++||++.. ....+++++.+.++|||..+|.
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999998864 4668999999999999987764
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=67.16 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=51.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC--C-C-ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI--P-A-ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~--p-~-~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ .+++|+.+|+.+.. . . .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999985 456 999999 8888877643 57999999997642 1 2 3998875
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.4e-05 Score=61.13 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=52.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~D~v~~~~vl 166 (254)
.+.+|+|+|||||.++...+-..+. + ++++|+ |+.++.++++ .+|.|...|..+.-...|.++++=-+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4678999999999999987766443 5 899999 8888887765 57999999986654444777775443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.2e-05 Score=61.06 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred EEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---ccEEEeccccccC
Q 025363 101 LVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMKWVLTTW 169 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---~D~v~~~~vlh~~ 169 (254)
|.||||.+|.+...|++....-+ +++.|+ +.-++.+++. ++|++..+|-++.++. .|+|++.. +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----M 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----M 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----C
Confidence 68999999999999999977666 999998 7777766543 7899999998887443 47777644 3
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
......+||++....++...+|++.-. .....++.+|.+.||.+++-.
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 456677888888887766556555110 134567889999999987654
Q ss_pred E
Q 025363 250 R 250 (254)
Q Consensus 250 ~ 250 (254)
-
T Consensus 124 l 124 (205)
T PF04816_consen 124 L 124 (205)
T ss_dssp E
T ss_pred E
Confidence 3
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=56.50 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhh-----------CCCC--CCcEEEeCCCCCC-CCCc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAE-----------APSI--PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~-----------~~~~--~~i~~~~~d~~~~-~p~~ 157 (254)
+++++.+|+|+=.|.|.++.-|.... +.+ +.++.. .+...- +++. .+++.+..+.... .|+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQK 122 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhc-CCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCc
Confidence 57899999999999999999887764 223 333332 222111 1111 3344444443333 3333
Q ss_pred -cEEEecccccc-----CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCH
Q 025363 158 -DAIFMKWVLTT-----WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTE 231 (254)
Q Consensus 158 -D~v~~~~vlh~-----~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 231 (254)
|+++....-|+ +....+.++-+.++++|||||.+++.|........ .. +- ..-..++.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~--------dt-------~~~~ri~~ 186 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LS--------DT-------ITLHRIDP 186 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hh--------hh-------hhhcccCh
Confidence 77776443332 33567889999999999999999999987643211 10 00 00122466
Q ss_pred HHHHHHHHhCCCCeeeEE
Q 025363 232 QEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~~ 249 (254)
.-..+..+++||+..--.
T Consensus 187 a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 187 AVVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHHhhcceeeeee
Confidence 778888999999865443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.2e-05 Score=63.24 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=62.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
+.++|++.-+ .++...|||||.|||.++..++++ +.+ ++++++ |.|++..+++ ....+..+|++.. .
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4677777775 889999999999999999999999 455 888988 8888776543 5789999999987 6
Q ss_pred CCccEEEe
Q 025363 155 PAADAIFM 162 (254)
Q Consensus 155 p~~D~v~~ 162 (254)
|..|.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 77687776
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-06 Score=69.03 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=70.9
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhh----CCCC---CCcEEEeCCCCCC---CCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAE----APSI---PGVTHIGGDMFKS---IPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~----~~~~---~~i~~~~~d~~~~---~p~ 156 (254)
.+-...+.++ .++|||||.|.|.-+.++-.-+|+++.++.+.....+.. ..++ ........|+..+ +|.
T Consensus 104 ~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3334444444 456999999999999998889998874566665222221 1111 2233344555444 455
Q ss_pred ccEEEecccccc----CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTT----WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~----~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+|.|.+..++|. -........++++...+.|||.|+|+|.-.+
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 576666555553 3333444589999999999999999997544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.96 E-value=7e-06 Score=72.57 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-- 155 (254)
.+.+.+.+. ..+..+|||+|||+|.++..+++.. .+ ++++|. +++++.++++ .+++|+.+|+.+.++
T Consensus 281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 344455443 5667899999999999999999874 35 999999 8888877753 579999999865321
Q ss_pred ----C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 ----A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ----~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
. .|+|++.--=-.. ...+++.+.+ ++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 3888873221111 1355665554 788876665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.5e-05 Score=68.56 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC-CC-----CCCcEEEeCCCCC---CCCCc--cEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA-PS-----IPGVTHIGGDMFK---SIPAA--DAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~-~~-----~~~i~~~~~d~~~---~~p~~--D~v~~~~ 164 (254)
....+||||||.|.++..+++.+|+.. ++++|. ...+..+ +. ..++.++..|+.. .+|.+ |.|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 356789999999999999999999999 999998 4433332 21 1577888877631 25543 7666533
Q ss_pred ccccCCHH-------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTDD-------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-= =|+.. -...+|+.+++.|+|||.|.+..
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 21 02211 12478999999999999998754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=65.77 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CC-Cc-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IP-AA-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~~-D~v~~~~ 164 (254)
+-.++.|||||||+|.++..-+++. ..+ +.++|..++.+.+.+. ..|+++.|.+.+- +| +. |+|+.-+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3457899999999999999888886 335 8999987776655432 5689999988876 77 44 9999754
Q ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEE
Q 025363 165 VLTTW-TDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 165 vlh~~-~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
.=+.. -..-...+|-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 32211 12234455555567899999764
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=60.67 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-----CC--ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-----PA--ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-----p~--~D~v~ 161 (254)
.+.++||++||+|.++.+++.+... . ++.+|. +..++.++++ .+++++.+|+++.+ .. .|+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 3679999999999999999998643 6 888998 6666655442 46889999996641 12 27777
Q ss_pred eccccccCCHHHHHHHHHHHHH--hCCCCCEEEEE
Q 025363 162 MKWVLTTWTDDECKLIMENCYK--ALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~ 194 (254)
+.=-... ....++++.+.+ .|+++|.+++-
T Consensus 127 ~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 127 LDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred ECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 6333221 112344444433 67777765553
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00071 Score=55.48 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=89.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH-------HhhCCC----------------------------
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV-------VAEAPS---------------------------- 139 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~-------~~~~~~---------------------------- 139 (254)
....+||-=|||-|.++-.++++.-. +.+-+. --| +....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34678999999999999999988433 333333 111 111000
Q ss_pred -----------CCCcEEEeCCCCCC-CCC----c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC
Q 025363 140 -----------IPGVTHIGGDMFKS-IPA----A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 202 (254)
Q Consensus 140 -----------~~~i~~~~~d~~~~-~p~----~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 202 (254)
..+++...|||.+- .+. . |+|+..+.+. +.+...+.|+.|+++|||||..+=.-+..-...
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 03578899999886 333 3 9998886665 346788999999999999996554444332221
Q ss_pred CChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 203 NESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
. .. . .....-+.+.+|+.++.++.||++++...
T Consensus 210 ~------------~~--~-~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P------------MS--I-PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C------------CC--C-CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 0 01123568999999999999999887554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=61.36 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=68.3
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hH---HHhhCCC---CCCcEEEeCCCCCC-CCC-ccEEEeccccccCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PE---VVAEAPS---IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT 170 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~---~~~~~~~---~~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~ 170 (254)
+++|||+|.|.-++.++=.+|+.+ ++.+|. .. .+..+.. .++++++.+.+.+. .+. .|+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999 999996 32 2222211 16799999888872 333 49999988752
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...+++-+...++|||+++..-.
T Consensus 127 ---l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 ---LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ---HHHHHHHHGGGEEEEEEEEEEES
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEcC
Confidence 35788999999999999998653
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=55.91 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--------
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I-------- 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~-------- 154 (254)
..++.+.+.-++++.+|+|+|+..|.++..+++... ... ++++|+.+|-. .+.|.++.+|++.+ .
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 345556664567889999999999999999988865 455 89999855432 25699999999887 2
Q ss_pred CC--ccEEEe---ccccccCCH------HHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 155 PA--ADAIFM---KWVLTTWTD------DECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 155 p~--~D~v~~---~~vlh~~~~------~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+. .|+|++ .++--+++- .-+..++.-+.+.|+|||.+++-.+.-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 22 288884 322222221 224567777888999999999876644
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.8e-05 Score=63.90 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=55.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~ 152 (254)
+.+++++.+. ..++..+||.+||.|..+..+++.++ +.+ ++++|. |++++.+++. .|++++.+|+.+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 4567788774 67778999999999999999999986 678 999999 9898887653 478888888765
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.1e-05 Score=66.31 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=62.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC----CccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p----~~D~v~~~~v 165 (254)
+..+|||++||+|.++..++.. ..+ ++++|. +..++.++++ .+++|..+|+.+..+ ..|+|++.=-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 3579999999999999999865 356 999998 8888776653 478999999865422 2499888322
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
--.. ..++++.+. .++|++.+++.
T Consensus 310 r~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RRGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 1111 124445554 36888766663
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=64.10 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCCc-cEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAA-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~~-D~v~~ 162 (254)
..++.+|||+++|.|.=+..+++...+ .. ++..|+ +.-+...+++ .+|.+...|.... .+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGA-IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 467889999999999999999998754 45 888897 6555444432 5577777776532 3443 88884
Q ss_pred ----c--cc-------cccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccC
Q 025363 163 ----K--WV-------LTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 163 ----~--~v-------lh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+ .+ ...|+.++. .+||.++.+.|||||+|+.+...+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2 12 233544443 5799999999999999988766543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.3e-05 Score=60.86 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=63.5
Q ss_pred HHHHHhhcCCCC--CCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC--------
Q 025363 85 MTSVLEGYNGFK--GVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-------- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-------- 153 (254)
..++.+.++-++ +..++||+||++|.++..++++. +..+ ++++|+..+. ..+.+.+..+|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 345666663244 45899999999999999999997 5566 9999984431 114455555555432
Q ss_pred -CC---Cc-cEEEeccccc---c--C----CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 -IP---AA-DAIFMKWVLT---T--W----TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 -~p---~~-D~v~~~~vlh---~--~----~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+ .. |+|++--... + . +-+-+...|.-+.+.|+|||.+++--.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 12 12 8888744211 1 0 112234455555677899998887444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=58.49 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=60.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~-~p~- 156 (254)
..+.|++..+ ..++..|+|||+|.|.++..|+++... ++++++ +.+++..++ .++++++.+|+.+. ++.
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh
Confidence 4677888774 667889999999999999999999655 666666 555444433 37899999999986 674
Q ss_pred -c-cEEEeccccccCCHH
Q 025363 157 -A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 157 -~-D~v~~~~vlh~~~~~ 172 (254)
. +.|+. +.=++++.+
T Consensus 94 ~~~~~vVa-NlPY~Issp 110 (259)
T COG0030 94 AQPYKVVA-NLPYNISSP 110 (259)
T ss_pred cCCCEEEE-cCCCcccHH
Confidence 3 55544 333344444
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00033 Score=53.25 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC-CCc-cEEEecc--cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI-PAA-DAIFMKW--VL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~-p~~-D~v~~~~--vl 166 (254)
..-++|||||+|..+..|++.. |+.. ....|+ |+.++...+. -++..+..|+...+ ++. |+++.+- +.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 5678999999999999998875 5666 778898 8887765432 34667788887763 344 7776632 22
Q ss_pred cc------------CC-----HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TT------------WT-----DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~------------~~-----~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-. |. -+-..++|.++-..|.|.|.+++.-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 11 11 0112355666666677777666543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=60.53 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCC-C-c-cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A-A-DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p-~-~-D~v~~~~vlh~~~~ 171 (254)
+.++.++|||||++|.++..++++ +.+ ++++|...+.......++|.+..+|.+...| . . |++++-.+-
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 357889999999999999999998 457 9999987777666677999999999998854 3 2 888885542
Q ss_pred HHHHHHHHHHHHhCCCC-CEEEEEccccC
Q 025363 172 DECKLIMENCYKALPAG-GKLIACEPVLP 199 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pg-G~l~i~d~~~~ 199 (254)
....+++-+.+.|..| .+-.|...-++
T Consensus 281 -~P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 281 -KPARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred -CHHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 3457777888888766 34444444443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.5e-05 Score=57.36 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------------CCCcEEEeCCCCCCCCCc-cEEEe
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIPAA-DAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------------~~~i~~~~~d~~~~~p~~-D~v~~ 162 (254)
.-.+.|||||.|.++..|...+|+.- +.+.++ ..+.+-.++ ..++.+...+.+..+|+. .--.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 35689999999999999999999987 777776 433332221 156777777777666541 11111
Q ss_pred ccccccCCHHH-----------HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWTDDE-----------CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~~~~-----------~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+-.++.++|.. ...++.+..=+|++||.++.+..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 12222222221 23577888889999999987654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00075 Score=53.30 Aligned_cols=134 Identities=18% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-h----HHHhhCCCCCCcEEEeCCCCCCC------CCccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-P----EVVAEAPSIPGVTHIGGDMFKSI------PAADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~----~~~~~~~~~~~i~~~~~d~~~~~------p~~D~v~ 161 (254)
+++++.+||-+|.++|.....+..-.. ... +.+++. | +.+..++++++|--+-.|+..+. +..|+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEE
Confidence 578999999999999999999999765 556 677776 5 45556666788888888887762 1128877
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
.--. + ++++.-++.++..-||+||.++++=-....+...++. -.-.+-.+.|++.
T Consensus 149 ~DVa-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~---------------------~vf~~e~~~L~~~ 203 (229)
T PF01269_consen 149 QDVA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE---------------------EVFAEEVKKLKEE 203 (229)
T ss_dssp EE-S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH---------------------HHHHHHHHHHHCT
T ss_pred ecCC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH---------------------HHHHHHHHHHHHc
Confidence 6332 2 3677888899999999999988753211111000000 0112335678889
Q ss_pred CCCeeeEEEccC
Q 025363 242 GFPHLRLYRVLD 253 (254)
Q Consensus 242 Gf~~~~~~~~~~ 253 (254)
||++.+...+--
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999988877643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0017 Score=53.69 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=94.6
Q ss_pred hHHHHHhhcCC---CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-----hH-HHhhCC----------------
Q 025363 84 FMTSVLEGYNG---FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-----PE-VVAEAP---------------- 138 (254)
Q Consensus 84 ~~~~i~~~~~~---~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-----~~-~~~~~~---------------- 138 (254)
.++.+-..+++ .....+||-=|||.|.++..|+...+.++ +--+.. .. ++...+
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q-GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ-GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 34455555541 12356889999999999999998877664 211100 00 000000
Q ss_pred ---------C--------------CCCcEEEeCCCCCCC--CC---c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCC
Q 025363 139 ---------S--------------IPGVTHIGGDMFKSI--PA---A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 139 ---------~--------------~~~i~~~~~d~~~~~--p~---~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG 189 (254)
. ....+..+|||.+-. +. . |+|+..+.+. +.....+.|+.+.+.|||||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCc
Confidence 0 023455779998863 33 2 8888876654 34677899999999999999
Q ss_pred EEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 190 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 190 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
..+=.-+......+.+ +.. ...+-+.+.+++..+.+.-||++++.+.
T Consensus 291 vWiNlGPLlYHF~d~~---------g~~-----~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTH---------GVE-----NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EEEeccceeeeccCCC---------CCc-----ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 9876666554332100 000 1124568999999999999999887663
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00035 Score=58.82 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCCCCC----c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSIPA----A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~~p~----~ 157 (254)
+...++|-+|||.|-.+.++++ +|+..+++.+|+ |.|++.++.. +|++++..|.++.... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4568999999999999999874 575544899999 9999988742 7999999999987322 2
Q ss_pred cEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|.||.-..=-. ...-...++-.-+++.|+++|.+++.-.
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 88876221000 0011245677888999999999988543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=56.97 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-h---HHHhhCCC---CCCcEEEeCCCCCCC--CC-ccEEEeccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-P---EVVAEAPS---IPGVTHIGGDMFKSI--PA-ADAIFMKWVLT 167 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~---~~~~~~~~---~~~i~~~~~d~~~~~--p~-~D~v~~~~vlh 167 (254)
..+++|||+|.|.-+..++=.+|+.+ ++.+|. . ..++.+.. .++++++.+-+.+.. +. .|+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 68999999999999999999999999 999995 2 23333322 277999888887663 34 7999987763
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
....++.-+...+|+||+++.
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchh
Confidence 345788889999999998765
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=51.23 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=72.9
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.+-.+++|||+|.|+|-.++.-++... .. ++..|. |.....+.-+ -.|.+...|...+.+..|+++...++.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA-~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA-AE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh-HH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 355689999999999999988777732 23 566676 5555554433 347778888776444459999999997
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+- ....+++.-..++...|-.++|.|+..+..
T Consensus 154 ~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred Cc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 64 556677875555556677888888766544
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=3e-05 Score=60.00 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC---ccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA---ADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~---~D~v~~~~vlh~~~~~ 172 (254)
...++||+|+|.|..+..++..+.+ +.+.++ ..|..+.+.. +.++.. ..+-+.. .|+|.+.++|..- .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk-~ynVl~--~~ew~~t~~k~dli~clNlLDRc--~ 183 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKK-NYNVLT--EIEWLQTDVKLDLILCLNLLDRC--F 183 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhc-CCceee--ehhhhhcCceeehHHHHHHHHhh--c
Confidence 4679999999999999888766654 333355 4566555543 222221 1122211 2999999988653 2
Q ss_pred HHHHHHHHHHHhCCC-CCEEEEEccccCC------CCCChhhhhhcccchHhhhhccccCceec--CHHHHHHHHHhCCC
Q 025363 173 ECKLIMENCYKALPA-GGKLIACEPVLPD------DSNESQRTRALLEGDIFVMTIYRAKGNHR--TEQEFKQLGFFAGF 243 (254)
Q Consensus 173 ~~~~il~~~~~~L~p-gG~l~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf 243 (254)
+.-++|+.++.+|+| .|++++.= ++|- .....+. ..|-. + ...|+.+ ....+.++|+++||
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~~-----rPdn~-L---e~~Gr~~ee~v~~~~e~lr~~g~ 253 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLPL-----RPDNL-L---ENNGRSFEEEVARFMELLRNCGY 253 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCcC-----CchHH-H---HhcCccHHHHHHHHHHHHHhcCc
Confidence 456999999999999 68876632 2221 0010010 00100 1 1134433 23467899999999
Q ss_pred CeeeEEEcc
Q 025363 244 PHLRLYRVL 252 (254)
Q Consensus 244 ~~~~~~~~~ 252 (254)
.+....++|
T Consensus 254 ~veawTrlP 262 (288)
T KOG3987|consen 254 RVEAWTRLP 262 (288)
T ss_pred hhhhhhcCC
Confidence 987766553
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00017 Score=62.48 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=68.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--C-ccEEEeccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP--A-ADAIFMKWVLT 167 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p--~-~D~v~~~~vlh 167 (254)
..+|||++||+|..+..++...+..+ +++.|. +..++.++++ ..+.+..+|+.+.+. . .|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999998876556 999999 8887776653 346688888755432 2 49998832 2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.....++..+.+.++|||.|.+.
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12246788877888999999997
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=57.17 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=68.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcE--EEeCCCCCC-CCC-c-cEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVT--HIGGDMFKS-IPA-A-DAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~--~~~~d~~~~-~p~-~-D~v~~~~vlh 167 (254)
+....++|||||-|.....+.... +...+..|. -.|++.++.. +.|. ...+|-..- +.+ . |+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345689999999999999998875 322788898 7888887765 4443 344554332 333 3 9999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
|. .+...-+.+|+.+|||+|.++-
T Consensus 149 -W~-NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 149 -WT-NDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred -hh-ccCchHHHHHHHhcCCCccchh
Confidence 43 3445678899999999997654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=48.64 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=63.9
Q ss_pred EEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCCC---C---cEEEeCCCCC---CCCC--c-cEEEecccc
Q 025363 101 LVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSIP---G---VTHIGGDMFK---SIPA--A-DAIFMKWVL 166 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~~---~---i~~~~~d~~~---~~p~--~-D~v~~~~vl 166 (254)
++|+|||+|... .+....+. .. ++++|. +.++...+... . +.+..+|... ++.. . |++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999987 33333332 35 777888 66665533211 1 5788888765 2333 3 888444444
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+... ....++++.+.++|+|.+++.+.....
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4433 678999999999999999998776543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00035 Score=57.57 Aligned_cols=97 Identities=14% Similarity=0.273 Sum_probs=67.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~-~p~- 156 (254)
+++.+++..+ ..++..|+|||+|.|.++..|++.. .+ +++++. +.+.+..++ .++++++.+|+.+. .+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 5667777774 7789999999999999999999997 44 888887 665555443 47899999999986 444
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCC
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAG 188 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pg 188 (254)
..+.+..+.=+.. ...++.++...-+.|
T Consensus 94 ~~~~~~~vv~NlPy~i----s~~il~~ll~~~~~g 124 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNI----SSPILRKLLELYRFG 124 (262)
T ss_dssp CSSSEEEEEEEETGTG----HHHHHHHHHHHGGGC
T ss_pred hcCCceEEEEEecccc----hHHHHHHHhhccccc
Confidence 3344444433333 245666666644443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00033 Score=55.88 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=75.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC----CCeEEEeec-hHHHhhCCC-----CCC--cEEEeCCCCCC---CCCc---c
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF----ICEGINFDL-PEVVAEAPS-----IPG--VTHIGGDMFKS---IPAA---D 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~----~~~~~~~D~-~~~~~~~~~-----~~~--i~~~~~d~~~~---~p~~---D 158 (254)
+..+++|+|+|+..=+..+++.+.+ ++ .+-+|. ..++....+ .+. |.-+++|+... +|.. =
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 3779999999999999999988765 55 888898 666554322 244 44466777665 3443 3
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+++...|-++++++|..+|.+++.+|+||-++++.-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4667889999999999999999999999999988853
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=53.81 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=70.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCccEEEeccccccCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAADAIFMKWVLTTWT 170 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~ 170 (254)
..+.|+|.|+|.++.-.+++ .-+ +++++. |...+.+.++ .+++++.+|+.+. +..+|+|+|-..=-.+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 47899999999999866655 234 888888 6666666554 6899999999887 76679999854322222
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.-+.+++.+-+-||-+++++=.+.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHHH
Confidence 45567889999999999988775443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00017 Score=56.70 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
..++.+|+|.-||.|.++..+++..+... +++.|+ |...+-.+++ .+|....+|..+..+. +|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 46788999999999999999999766667 999999 8776655432 6789999998776543 39888855
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
.- .+..+|..+.+++++||.+.
T Consensus 178 p~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PE------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TS------SGGGGHHHHHHHEEEEEEEE
T ss_pred hH------HHHHHHHHHHHHhcCCcEEE
Confidence 32 23467888999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.015 Score=45.24 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-h----HHHhhCCCCCCcEEEeCCCCCCC------CCccEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-P----EVVAEAPSIPGVTHIGGDMFKSI------PAADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~----~~~~~~~~~~~i~~~~~d~~~~~------p~~D~v~~ 162 (254)
+.+++.+||=+|..+|.....+..-.+... +.+++. | +.+..++++++|--+-+|+-.+. +..|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 578999999999999999999999988655 555554 3 45556667788887888887652 11388765
Q ss_pred ccccccCC-HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 163 KWVLTTWT-DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 163 ~~vlh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+.+ ++++.-+..++..-||+||.+++.=-....+...++. + .-.+-.+.|++.
T Consensus 152 -----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~--------------------~-vf~~ev~kL~~~ 205 (231)
T COG1889 152 -----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE--------------------E-VFKDEVEKLEEG 205 (231)
T ss_pred -----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH--------------------H-HHHHHHHHHHhc
Confidence 222 4567778889999999999877643322211111111 0 112234678889
Q ss_pred CCCeeeEEEcc
Q 025363 242 GFPHLRLYRVL 252 (254)
Q Consensus 242 Gf~~~~~~~~~ 252 (254)
||++.+..++.
T Consensus 206 ~f~i~e~~~Le 216 (231)
T COG1889 206 GFEILEVVDLE 216 (231)
T ss_pred CceeeEEeccC
Confidence 99998887664
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00028 Score=60.65 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=42.7
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 152 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~ 152 (254)
.+|||++||+|.++..+++... + ++++|. +++++.++++ .+++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988863 6 999998 8888877764 468899998865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00035 Score=60.27 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=42.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 152 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~ 152 (254)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 5 999998 8888777654 478899988865
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00042 Score=50.70 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-c--cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-A--DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~--D~v~~~~vlh 167 (254)
.+++++|+|||.|.+.. +-.++..+.++++|+ |+.++-...+ -++++.+.|+.+..+. + |.+++.--+-
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 47899999999999994 444555544899999 8888877655 3577888888777433 2 8777755443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00073 Score=50.18 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCCc-c
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPAA-D 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~~-D 158 (254)
..+..+|+|+|||.|.++..++.. .++.+ ++++|. +...+.+... .++.+..++..+. .... +
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 456789999999999999999982 26778 999998 6666555432 4566666665444 2222 7
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+++.-|.=-+.+ ..+|+.+.+ |+-+.++
T Consensus 102 ~~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVGLHACGDLS----DRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEEeecccchH----HHHHHHHHH---cCCCEEE
Confidence 777755554443 345555555 5544444
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=49.55 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCC--------eEEEeec-hHHHhhCCCC-------CCcEEEeCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFIC--------EGINFDL-PEVVAEAPSI-------PGVTHIGGD 149 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~--------~~~~~D~-~~~~~~~~~~-------~~i~~~~~d 149 (254)
..++..- .++++..|+|-=||+|.+.++.+...++.. .+++.|+ +.+++.++.+ ..|.+...|
T Consensus 18 ~~ll~la-~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 18 AALLNLA-GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHT-T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHh-CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 3344444 477888999999999999988776654422 1678998 8888777653 458899999
Q ss_pred CCCC-CCC-c-cEEEecccccc-CCH-HH----HHHHHHHHHHhCCCCCEEEE
Q 025363 150 MFKS-IPA-A-DAIFMKWVLTT-WTD-DE----CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 150 ~~~~-~p~-~-D~v~~~~vlh~-~~~-~~----~~~il~~~~~~L~pgG~l~i 193 (254)
+.+. .+. . |+|++.--.-. ... .+ -.+++++++++|+|...+++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9876 343 3 99998432221 121 22 23568888999998433333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0061 Score=48.04 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-CC-c-cEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-PA-A-DAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-p~-~-D~v~~~~vl 166 (254)
+.++.||||.++.+...+.+.++... ++..|. +.-++.+... ++++...+|-+..+ ++ . |+++...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 44599999999999999999999888 999997 6555544332 78999999998873 44 2 8777644
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+...-...||++-.+-|+.=-++++
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEE
Confidence 3445667888888887764344444
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0038 Score=51.31 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCC----------CCc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSI----------PAA 157 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~----------p~~ 157 (254)
+...|+.+|||--.-...+... ++++ +.-+|.|++++.-++ ..+..++..|+.+++ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3567999999998888776322 2466 788888987764322 257889999987332 112
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChh-hhhhcccchHhhhhccccCce----ecCH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGN----HRTE 231 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~t~ 231 (254)
-++++-.++..++.+++.++|+.+.+...||+.|++ |...+-...... .... ... .. ....+. ..+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRAGMRAP--VYH---AA-RGVDGSGLVFGIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHHHHHHH--HHH---hh-hcccccccccCCCh
Confidence 478888899999999999999999999889988775 444331111000 0000 000 00 000011 1367
Q ss_pred HHHHHHHHhCCCCeeeE
Q 025363 232 QEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~ 248 (254)
+++.++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999997654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00016 Score=50.83 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=40.3
Q ss_pred EEecCcccHHHHHHHHHcCCC---CeEEEeec-h---HHHhhCCC---CCCcEEEeCCCCCCC---C-Cc-cEEEecccc
Q 025363 102 VDVGGSAGDCLRMILQKHRFI---CEGINFDL-P---EVVAEAPS---IPGVTHIGGDMFKSI---P-AA-DAIFMKWVL 166 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~---~~~~~~D~-~---~~~~~~~~---~~~i~~~~~d~~~~~---p-~~-D~v~~~~vl 166 (254)
||||+..|..+..+++..+.. + ++.+|. + ...+..++ ..+++++.++..+.+ + .. |++++-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 689999999999998876544 5 788998 5 23333332 268999999986653 3 22 8888743 3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|. .+....-++.+.+.|+|||.+++.|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 32 3566788999999999999988865
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0042 Score=48.72 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=78.5
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-----CCcEEEeCCCCCC---
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-----PGVTHIGGDMFKS--- 153 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-----~~i~~~~~d~~~~--- 153 (254)
.+.+....++. ..++.+||.||=|-|.....+.++-|... .|.---|+++++.++. .+|....|-..+.
T Consensus 88 tpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 88 TPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 33444444444 36788999999999999998888888766 6654459999888764 5676666654433
Q ss_pred CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 154 IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 154 ~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+|+. |-|+.--.-.. .++...+.+.+.++|||+|.+-.+....-
T Consensus 165 L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred ccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 4543 66654322111 26788899999999999999887765443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=51.58 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=55.8
Q ss_pred CCeEEEecCcccHHHHHH---HHHc-CCCCeEEEeec--hHHHhhCCCC----CCcEEEeCCCCCC--C-C------Cc-
Q 025363 98 VKRLVDVGGSAGDCLRMI---LQKH-RFICEGINFDL--PEVVAEAPSI----PGVTHIGGDMFKS--I-P------AA- 157 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l---~~~~-~~~~~~~~~D~--~~~~~~~~~~----~~i~~~~~d~~~~--~-p------~~- 157 (254)
...|+|+|--.|..+... ++.+ ++.+ ++++|+ ...-..+.+. +||+++.||..+. + + ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 579999997666665544 4555 6667 888987 2222223332 8999999998765 1 1 11
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
-++++-..=|.. +.+.+.|+.....++||++++|.|....
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 234444444543 4567889999999999999999887654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00025 Score=52.83 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCC--C-C--ccEEE
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSI--P-A--ADAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~--p-~--~D~v~ 161 (254)
+.+||++||| +|-.+..++..-|... +-+.|- .+.++..++. .++.....+....+ . + .|.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4789999999 5666666666667767 777775 4444443321 34444444443331 1 2 29999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+..++.. ++--..+.+.|+..|+|.|+-++.-
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 9998863 5667789999999999999866644
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00022 Score=53.97 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-----C-ccEEEe
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-----A-ADAIFM 162 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-----~-~D~v~~ 162 (254)
.|+|+-||.|..++++++.+.. ++.+|+ |..++.++.+ ++|.|+.+|+++..+ . .|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6899999999999999999754 888898 7777766653 689999999987632 1 378876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0075 Score=49.01 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=83.1
Q ss_pred cccCchHHHHHHHHHhcCCch----hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhh
Q 025363 63 YGKIPEMNGLMRKAMSGVSVP----FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAE 136 (254)
Q Consensus 63 ~~~~~~~~~~~~~~m~~~~~~----~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~ 136 (254)
++-.|++ |-.+|-..+.. -+..|+..++ ..++.+|++-|.|+|.++.++++.. |..+ +.-+|. ..-.+.
T Consensus 71 L~PTpEL---WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~k 145 (314)
T KOG2915|consen 71 LQPTPEL---WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEK 145 (314)
T ss_pred ecCChHH---hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHH
Confidence 3445555 44555555553 3566788885 8999999999999999999999986 5556 777786 332223
Q ss_pred CCC----C---CCcEEEeCCCCCC-CCC----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCC-EEEEEcccc
Q 025363 137 APS----I---PGVTHIGGDMFKS-IPA----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGG-KLIACEPVL 198 (254)
Q Consensus 137 ~~~----~---~~i~~~~~d~~~~-~p~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG-~l~i~d~~~ 198 (254)
+.+ . .++++..-|.... ++. +|.|++ +++. .-..+-.++.+||.+| +|+...+.+
T Consensus 146 a~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPa--Pw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 146 ALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPA--PWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred HHHHHHHhCCCcceEEEEeecccCCccccccccceEEE-----cCCC--hhhhhhhhHHHhhhcCceEEeccHHH
Confidence 322 2 6789999898877 443 498887 3322 2345667777888765 777655444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0041 Score=49.28 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHh-------hCCCCCCcEEEeCCCCCCC----CC----c-c
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVA-------EAPSIPGVTHIGGDMFKSI----PA----A-D 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~-------~~~~~~~i~~~~~d~~~~~----p~----~-D 158 (254)
..++++|||.=||..+..++.+.|. .+ ++.+|. +...+ .+.....|+++.+...+.+ +. . |
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGr-v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGR-VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCce-EEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 4789999999999999999999985 45 888887 43333 3333378999999988763 21 2 8
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.+++- +|- +.......++-+++|+||.|++-...++.
T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 88762 343 34458999999999999998886655554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=47.43 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=87.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeC-CCCCCCC----Cc
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGG-DMFKSIP----AA 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~-d~~~~~p----~~ 157 (254)
....++.|+-..++..+||||+.||.++.-++++. ++.+.++|. ..+....+..+||...+. |+..-.| +.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 34456666533467899999999999999999883 333788886 334444555567665443 3322122 22
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE-ccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
|++++--.+ -....+|..+...++|++.++.. -+-+.-... ...- -..+.-......-..++.
T Consensus 145 ~d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~---------~v~k-kGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 145 PDLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGRE---------QVGK-KGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred CCeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhh---------hcCc-CceecCcchHHHHHHHHH
Confidence 777774443 34568999999999999876652 221111100 0000 000001112223467888
Q ss_pred HHHHhCCCCeeeEEE
Q 025363 236 QLGFFAGFPHLRLYR 250 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~ 250 (254)
+++++.||++..+..
T Consensus 210 ~~~~~~g~~~~gl~~ 224 (245)
T COG1189 210 NFAKELGFQVKGLIK 224 (245)
T ss_pred HHHhhcCcEEeeeEc
Confidence 999999999877654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0029 Score=52.11 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCeEEEecCcccHH-HHHHHHHc-CCCCeEEEeec-hHHHhhCCC--------CCCcEEEeCCCCCC---CCCccEEEec
Q 025363 98 VKRLVDVGGSAGDC-LRMILQKH-RFICEGINFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPAADAIFMK 163 (254)
Q Consensus 98 ~~~vlDvG~G~G~~-~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~--------~~~i~~~~~d~~~~---~p~~D~v~~~ 163 (254)
..+|+=||+|.=-+ ++.+++.+ ++.. ++.+|+ |+..+.+++ ..+++|+++|..+. +.+.|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999996554 44455443 5667 889998 776666543 17899999998654 2334999887
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
...- .+.++-.++|.++.+.|+||.+|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7664 23445679999999999999988874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=49.06 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=41.0
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMF 151 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~ 151 (254)
+++|||||.|.++..+++.+|..+ ++.+|. |.+.+.+++. +++.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999888 999998 8887766543 34676665554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0081 Score=56.48 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=74.0
Q ss_pred hhHHHHHhhcCCC-CCCCeEEEecCcccHHHHHHHHHc----C-------------------------------------
Q 025363 83 PFMTSVLEGYNGF-KGVKRLVDVGGSAGDCLRMILQKH----R------------------------------------- 120 (254)
Q Consensus 83 ~~~~~i~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----~------------------------------------- 120 (254)
.++..++..- .| .+...++|-.||+|.++++.+... |
T Consensus 176 tlAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3455666665 47 567899999999999998876531 1
Q ss_pred -CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC---C-ccEEEeccccc-cCC-HHHHHHHHHHHHHh
Q 025363 121 -FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP---A-ADAIFMKWVLT-TWT-DDECKLIMENCYKA 184 (254)
Q Consensus 121 -~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p---~-~D~v~~~~vlh-~~~-~~~~~~il~~~~~~ 184 (254)
..+ ++++|+ +.+++.++.+ .+|.|..+|+.+. .+ + .|+|+++=-.- .+. ..+...+.+.+.+.
T Consensus 255 ~~~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 235 789998 8888877764 4689999999775 22 1 39998853221 122 23444554444444
Q ss_pred CC---CCCEEEEEcc
Q 025363 185 LP---AGGKLIACEP 196 (254)
Q Consensus 185 L~---pgG~l~i~d~ 196 (254)
++ ||+++++...
T Consensus 334 lk~~~~g~~~~llt~ 348 (702)
T PRK11783 334 LKQQFGGWNAALFSS 348 (702)
T ss_pred HHHhCCCCeEEEEeC
Confidence 43 8988877543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=55.19 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH-------cCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC-C-C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK-------HRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS-I-P- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~-------~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~-~-p- 155 (254)
..+..+|+|-+||+|.++.++.+. .+... +.++|. +.+...++.+ ....+..+|.+.. . .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 556778999999999999998875 35667 889998 6655444321 3346788898876 2 2
Q ss_pred -C-ccEEEecc--ccccCCH-----------------HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 -A-ADAIFMKW--VLTTWTD-----------------DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 -~-~D~v~~~~--vlh~~~~-----------------~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++.- ....|.+ ..-..++..+.+.|++||++.++-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 2 39998732 2221111 111248899999999999876643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0034 Score=54.35 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC-CeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC-------CccE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-------AADA 159 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p-------~~D~ 159 (254)
.+.+|||+=|=||.++...+.. ++ + ++.+|+ ...++-++++ .++.|+.+|.|+.+. ..|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3889999999999999887766 45 6 999998 6677766654 568999999998742 1399
Q ss_pred EEecc-ccc-----cCC-HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 160 IFMKW-VLT-----TWT-DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 160 v~~~~-vlh-----~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|++-= .+- .|. ..+-.+++..+.++|+|||.++++....
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99811 111 122 2345689999999999999999976543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.005 Score=55.94 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=43.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC--------CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC--------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF--------ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-------- 153 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~--------~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-------- 153 (254)
...+|+|.|||+|.++..+++..+. .. ++++|+ +..+..++.. ..+.....|+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence 4569999999999999999987752 34 688888 6665544322 2345555555432
Q ss_pred CCCccEEEe
Q 025363 154 IPAADAIFM 162 (254)
Q Consensus 154 ~p~~D~v~~ 162 (254)
.+..|+|+.
T Consensus 110 ~~~fD~IIg 118 (524)
T TIGR02987 110 LDLFDIVIT 118 (524)
T ss_pred cCcccEEEe
Confidence 112399988
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0038 Score=49.09 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---Cc-cEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---AA-DAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---~~-D~v~~~~ 164 (254)
....|+|.-||.|..++.++.++|. ++.+|+ |.-++-++.+ +||+|++||+++... -+ |.|.+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4568999999999999999999876 778888 7667666654 799999999987632 12 4433322
Q ss_pred ccccCC-HHHHHHHHHHHHHhCCCCC
Q 025363 165 VLTTWT-DDECKLIMENCYKALPAGG 189 (254)
Q Consensus 165 vlh~~~-~~~~~~il~~~~~~L~pgG 189 (254)
.---|+ +.....-+-.+...++|.|
T Consensus 171 ~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 171 LSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred cCCCCCCcchhhhhhhhhhhhcchhH
Confidence 222233 2233444445555555553
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0014 Score=50.94 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=63.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC------CCc-cEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PAA-DAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~------p~~-D~v~ 161 (254)
.+.++||+=||+|.++.+.+.+. +.+++.+|. +..+...+++ .++..+..|.+..+ ... |+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 47899999999999999999884 433888898 6666665543 46888889976652 223 9999
Q ss_pred eccccccCCHHHHHHHHHHHH--HhCCCCCEEEEEccc
Q 025363 162 MKWVLTTWTDDECKLIMENCY--KALPAGGKLIACEPV 197 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~~ 197 (254)
+-=-.... ....++++.+. ..|+++|.+++ |..
T Consensus 120 lDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~-E~~ 154 (183)
T PF03602_consen 120 LDPPYAKG--LYYEELLELLAENNLLNEDGLIII-EHS 154 (183)
T ss_dssp E--STTSC--HHHHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred ECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence 84433321 11356777776 68888887665 443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0026 Score=54.57 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=74.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCc--cEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAA--DAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~--D~v~~~~ 164 (254)
.+...++|+|||.|.....+..- .... .+++|. +.-....... ....++.+|+.+. +++. |.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 44558999999999999887654 3445 677776 4333333221 4556688888876 5543 9998888
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+..+.++ ...++++++++++|||.++..|......
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 8888754 4689999999999999999988876543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0028 Score=55.79 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCC--eEEEeechHHHhhCCCCCCcEEEeCCCCCCC---CC-ccEEEecccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFIC--EGINFDLPEVVAEAPSIPGVTHIGGDMFKSI---PA-ADAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~--~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~---p~-~D~v~~~~vlh~ 168 (254)
+..-..|+|..+|.|.++.+|.+. .+- +++-.+-+..+...-++.=|. +-.|..+.+ |. .|++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 455688999999999999999765 232 012111133333333322222 234666654 44 399999999887
Q ss_pred CCHH-HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDD-ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+.+. +...+|-++=|+|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6543 467899999999999999999664
|
; GO: 0008168 methyltransferase activity |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.061 Score=46.58 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCCeEEEecCcccHHHHHH--------HHHc-------CCCCeEEEeechHH-----HhhCC---------------CCC
Q 025363 97 GVKRLVDVGGSAGDCLRMI--------LQKH-------RFICEGINFDLPEV-----VAEAP---------------SIP 141 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l--------~~~~-------~~~~~~~~~D~~~~-----~~~~~---------------~~~ 141 (254)
...+|+|+|||+|..+..+ .+++ |..+ +..=|+|.- ..... ...
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~ 141 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH 141 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence 3678999999999765443 2222 3455 666676521 11100 001
Q ss_pred C---cEEEeCCCCCC-CCCc--cEEEeccccccCCH--H----------------------------------HHHHHHH
Q 025363 142 G---VTHIGGDMFKS-IPAA--DAIFMKWVLTTWTD--D----------------------------------ECKLIME 179 (254)
Q Consensus 142 ~---i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~--~----------------------------------~~~~il~ 179 (254)
+ +.-+.|+|.+. +|.. ++++.++.+|-.+. + +-..+|+
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 23355888887 7775 99999999985541 1 1123455
Q ss_pred HHHHhCCCCCEEEEEccccC
Q 025363 180 NCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 180 ~~~~~L~pgG~l~i~d~~~~ 199 (254)
.=++-|.|||++++.=.-.+
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHhccCcEEEEEEecCC
Confidence 55667899999998765543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.016 Score=44.46 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=62.0
Q ss_pred hhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeC-CCCCC---------CCC--
Q 025363 90 EGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGG-DMFKS---------IPA-- 156 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~-d~~~~---------~p~-- 156 (254)
+.|.-+++..+|||+||..|.++.-..++. |+.. +.++|+-.+... +.+.++.+ |+.++ +|+
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIEPP----EGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeeccCC----CCcccccccccCCHHHHHHHHHhCCCCc
Confidence 334345788999999999999999888776 8888 899997443221 34555555 55443 133
Q ss_pred ccEEEecccccc----------CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTT----------WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~----------~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|+.- ..++ -.-+-|..+|.-....++|+|.++.--.
T Consensus 137 VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred ccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2776642 2221 1112344455555566789998776433
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0056 Score=52.93 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=69.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---C-ccEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---A-ADAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---~-~D~v~~~~vl 166 (254)
..+|||.-||+|..++..+...+++..++..|+ |..++.++++ .++.+..+|+...+. . .|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998765544899998 8777766653 347788888876532 2 39988733 3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. ....++..+.+.+++||.|.+.
T Consensus 124 G-----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-----CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1246889999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.036 Score=47.73 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p 155 (254)
....+ ...++.+|||..++.|.=+..+++...+ .. ++.+|. +.-+...+.+ .++..+..|.... .+
T Consensus 148 ~a~~L-~p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVL-DPKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHc-CCCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 34455 3678899999999999999999998775 44 588997 5444443332 3455666665322 22
Q ss_pred C---ccEEEe------c-------cccccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 156 A---ADAIFM------K-------WVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 156 ~---~D~v~~------~-------~vlh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
. .|.|++ . .+...++.++. .++|..+.+.|||||+|+.....+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2 366665 2 22334444432 368999999999999999987766543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.046 Score=46.32 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeC-CCCCC-CCC--ccEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGG-DMFKS-IPA--ADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~-d~~~~-~p~--~D~v~~ 162 (254)
...++..|||==||||.++++..-. ++. +++.|+ ..|++.++.+ ....+... |+... +++ -|.|++
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 3567889999999999999987655 667 999999 8888888875 23334444 77664 555 277776
Q ss_pred c-----cc-cccCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 K-----WV-LTTWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~-----~v-lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
- .. ..--. ++-..++|+.+.++|++||++++.-+
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11 21111 34467899999999999999988654
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.017 Score=48.03 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCeEEEecCcccHHHHHHHHHc--------------------CCCCeEEEeec---hHHHhhCCCC--------------
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH--------------------RFICEGINFDL---PEVVAEAPSI-------------- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~--------------------~~~~~~~~~D~---~~~~~~~~~~-------------- 140 (254)
..+||-||||.|.-..+++..+ +.+. ++.+|+ ..++......
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 4799999999999888877766 1245 788887 2344332110
Q ss_pred ---------CCcEEEeCCCCCC-CC---------CccEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 141 ---------PGVTHIGGDMFKS-IP---------AADAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p---------~~D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-+++|...|+.+. .+ ..++|.+.+.++- -+-.+-.++|.++...++||..|+|+|.-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 2478899998876 21 1267766655542 22456789999999999999999999864
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0031 Score=52.39 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=68.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC-----C-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-----A-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p-----~-~D~v~ 161 (254)
.+++|||+=|=||.++...+.. ...+ ++.+|. ...++.++++ .+++|+..|+++.+. . .|+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999986654 2335 899998 7777766653 579999999988632 1 39999
Q ss_pred ec---cccccCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MK---WVLTTWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~---~vlh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+- ..=..+. ..+-.++++.+.++|+|||.|+++-.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 81 1111122 23456789999999999999887654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.025 Score=48.04 Aligned_cols=98 Identities=24% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---~D~v~~~~ 164 (254)
.++.+|||.=+|-|.++..+++.. ..+ ++.+|+ |..++-.+++ ++|..+.||..+-.+. +|-|++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 458999999999999999998774 345 888998 8877666543 5688999999887544 69999977
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.- .+.+++..+.+.+++||.+...+....+.
T Consensus 265 p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 265 PK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 53 23467888888999999999988765543
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0012 Score=48.91 Aligned_cols=39 Identities=38% Similarity=0.572 Sum_probs=36.3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+|++.|++.|++-++-...++.|++.|||||+|-+.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999999999999999999999999987643
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0029 Score=50.96 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC--ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA--ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~--~D~v~~~~vlh 167 (254)
+...+|+|||||.--++.......|+.. .+++|+ ..+++..... .+.+....|.....|. +|+.++.-++|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 4578999999999999999888888888 999999 6666554432 5677778899988554 49999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+...+. -.--++-+.++ .-+++|..+
T Consensus 183 ~le~q~~-g~g~~ll~~~~-~~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALR-SPHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSC-ESEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhC-CCeEEEecc
Confidence 7743332 22233334443 235555444
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=47.72 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=91.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCC---------CCcEEEeCCCCCC-CCC----------
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKS-IPA---------- 156 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~---------~~i~~~~~d~~~~-~p~---------- 156 (254)
...|+-+|||--.-+-.+- .| +++ +.-+|.|++++.-++. .++++++.|+.++ .+.
T Consensus 93 ~~qvViLgaGLDTRayRl~--~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLD--WPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecC--CCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 6799999999665544332 23 355 7777889998764432 2799999999954 432
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC---hhhhhhcccchHhhhhccccCceecCHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE---SQRTRALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
. -++++-.++-.++.++..++|+.|.....||..++............ ..........+..... ..=......
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~ 246 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE---LVYFGDDPA 246 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc---ceeccCCHH
Confidence 1 47888999999999999999999999999999887755311111000 1100000000000000 000013578
Q ss_pred HHHHHHHhCCCCeeeE
Q 025363 233 EFKQLGFFAGFPHLRL 248 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~ 248 (254)
++..++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987655
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.097 Score=44.74 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH--------cC--------CCCeEEEeechHH-----HhhCC-------CCCC--cE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK--------HR--------FICEGINFDLPEV-----VAEAP-------SIPG--VT 144 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~--------~~--------~~~~~~~~D~~~~-----~~~~~-------~~~~--i~ 144 (254)
.+...+|+|+||.+|..+..+... ++ ..+ ++.-|+|.- ..... ..++ +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 556789999999999987765543 21 234 566676521 10000 0123 34
Q ss_pred EEeCCCCCC-CCCc--cEEEeccccccCCH-------------------------------------HHHHHHHHHHHHh
Q 025363 145 HIGGDMFKS-IPAA--DAIFMKWVLTTWTD-------------------------------------DECKLIMENCYKA 184 (254)
Q Consensus 145 ~~~~d~~~~-~p~~--D~v~~~~vlh~~~~-------------------------------------~~~~~il~~~~~~ 184 (254)
-+.++|.+. +|.. |+++.++.||-.+. .+...+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 467999988 7875 99999999985431 1112344444567
Q ss_pred CCCCCEEEEEccccCC
Q 025363 185 LPAGGKLIACEPVLPD 200 (254)
Q Consensus 185 L~pgG~l~i~d~~~~~ 200 (254)
|+|||++++.=...++
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8899999987666554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.099 Score=44.45 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCCCCeEEEecC-cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC---CCCCCCC-ccEEEeccccc
Q 025363 94 GFKGVKRLVDVGG-SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD---MFKSIPA-ADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~-G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d---~~~~~p~-~D~v~~~~vlh 167 (254)
...++.+|+=+|. |.|..+.+++++.. .+ ++++|. ++-.+.+++...-.++... ..+...+ .|+++..-.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 3567888888874 67889999999876 88 999999 7777777776555555543 2222222 488776443
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
...+...-+.|++||++++.-..
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 24467888899999999998765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.027 Score=47.17 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=54.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~ 152 (254)
+.+++++.+. ..++..++|.=+|.|..+..++++.++.+ ++++|. |.+++.+++. .|+.++.++|.+
T Consensus 8 ll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777774 67778999999999999999999988788 999999 8888777543 477777777643
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.054 Score=43.91 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=63.9
Q ss_pred CC-CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC------------CCcEEEeCCCCCC------CC
Q 025363 95 FK-GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI------------PGVTHIGGDMFKS------IP 155 (254)
Q Consensus 95 ~~-~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~------------~~i~~~~~d~~~~------~p 155 (254)
++ ...+||++|+|+|..++..+.. ...+ ++.-|.|.+++..+.. ..+.....+...+ .|
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~~-~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAALL-LGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHHH-hcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 44 4678999999999666655544 3556 7777876665554332 1455555444443 23
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|+.+.++.+ ++....++.-++..|-.++.+++.-
T Consensus 161 ~~~DlilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 161 NPFDLILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred CcccEEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEE
Confidence 4 599999998874 3445678888888898888554433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.075 Score=46.86 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=68.9
Q ss_pred CeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCC-----CCCCcEEEeCCCCCC-CCCc--cEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAP-----SIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~-----~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~ 168 (254)
.+++-+|||...+...+-+. +.+ ++-+|. +.+++... ..+-+.+...|+... ++.. |+|+....+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~d---I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFED---ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCC---ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccc
Confidence 49999999999888877665 233 566676 44444333 235688899999886 6653 99999888886
Q ss_pred C-CHHH-------HHHHHHHHHHhCCCCCEEEEEccc
Q 025363 169 W-TDDE-------CKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 169 ~-~~~~-------~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+ +++. +...+.++.++|+|||+.+.+-..
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 3 2322 334689999999999998887763
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.034 Score=46.60 Aligned_cols=65 Identities=28% Similarity=0.243 Sum_probs=48.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDM 150 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~ 150 (254)
+.+++++.+. ..++..++|.=-|.|..+.++++++|+.+ ++++|. |.+++.+++. +|+.++.++|
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-G
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccH
Confidence 4667788884 77888999999999999999999999988 999999 8888766543 6788877776
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.051 Score=46.57 Aligned_cols=111 Identities=18% Similarity=0.345 Sum_probs=76.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec---hHHHhhCCC-------------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL---PEVVAEAPS-------------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~---~~~~~~~~~-------------~~~i~~~~~ 148 (254)
...+++.+ ...+....+|+|+|.|.....++....... -+++.+ |.-.+.... ...++.+.+
T Consensus 181 l~si~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 181 LRSIVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHh-ccCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 34466666 478888999999999999998877654433 444443 322222111 145888889
Q ss_pred CCCCC------CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 149 DMFKS------IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 149 d~~~~------~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+|..+ .+++++|++.++.. +++ ...=++++..-+++|.+++-.+...+.
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~F--dp~-L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAF--DPE-LKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccC--CHH-HHHhhHHHHhhCCCcceEecccccccc
Confidence 98876 14469999999875 333 334455888999999999999888773
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.0066 Score=42.44 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=29.9
Q ss_pred cEEEeccc---cc-cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 158 DAIFMKWV---LT-TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 158 D~v~~~~v---lh-~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
|+|++..| +| +|.|+....+++++++.|+|||+|++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 77877554 34 47799999999999999999999887
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.032 Score=45.96 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=67.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p~--~D~ 159 (254)
....+++-||+|-|.+.....++ +.+..+..+|+ ..+++..++. ++|....||-+.. .++ .|+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45688999999999999998887 66553677787 5555544432 7899999987765 333 298
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|+.-..=-..+.. --..+.+-+.++|||||.++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8863211111111 12356778889999999998865
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.028 Score=49.76 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS 153 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~ 153 (254)
+-+.. ..+.+..++|+-||||..+..+++.... ++++++ |+.++.|+.+ .+.+|++|...+.
T Consensus 375 i~e~~-~l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 375 IGEWA-GLPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHh-CCCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 33444 4777899999999999999999988654 778877 7777776654 6789999855443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.22 Score=42.94 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=74.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC----CCe----------------------------------E
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF----ICE----------------------------------G 125 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~----~~~----------------------------------~ 125 (254)
++..++..- +|.+...++|-=||+|+++++.+...++ ..| .
T Consensus 179 LAaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 179 LAAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 345555555 5888899999999999999998877642 111 5
Q ss_pred EEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC-C-ccEEEec--cccccCCHHHHH----HHHHHHHHhCCCC
Q 025363 126 INFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP-A-ADAIFMK--WVLTTWTDDECK----LIMENCYKALPAG 188 (254)
Q Consensus 126 ~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~-~D~v~~~--~vlh~~~~~~~~----~il~~~~~~L~pg 188 (254)
++.|+ +.+++.|+.+ +.|+|..+|+... .| + .|+||++ +-...-+.+... .+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 68899 8898888765 5699999999765 33 3 3999983 333322222222 2444555666655
Q ss_pred CEEEEEc
Q 025363 189 GKLIACE 195 (254)
Q Consensus 189 G~l~i~d 195 (254)
++.++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.086 Score=40.83 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=63.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---C-C--ccEEEe
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---P-A--ADAIFM 162 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p-~--~D~v~~ 162 (254)
.+.++||+=+|+|.++.+-+.+.- .+ ++.+|. .......+++ .++.+...|....+ + . .|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-AR-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ce-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 478999999999999999998843 24 788887 5554444432 67888888887432 1 1 399998
Q ss_pred cccccc-CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 163 KWVLTT-WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 163 ~~vlh~-~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-=-++. .-+.+...++-.-...|+|+|.+++-.
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 555551 111122222223456799999877743
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.31 Score=40.62 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeechHHHhhCCC---C-------------------------CCcE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDLPEVVAEAPS---I-------------------------PGVT 144 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~---~-------------------------~~i~ 144 (254)
......|+.+|||.-.....+...+ +.+. .+-+|.|++++.--. . ++..
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~ 163 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYH 163 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCcee
Confidence 4567899999999999999999988 6777 888898776553211 0 2333
Q ss_pred EEeCCCCCC--C----CCc-------cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc
Q 025363 145 HIGGDMFKS--I----PAA-------DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL 211 (254)
Q Consensus 145 ~~~~d~~~~--~----p~~-------D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~ 211 (254)
....|.-+. + ..+ -+++.--+|-.++++++..+++.+.+..+ .+.+++.|.+.+.++-
T Consensus 164 ~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~F-------- 234 (335)
T KOG2918|consen 164 LIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRF-------- 234 (335)
T ss_pred eeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChH--------
Confidence 333443311 0 000 24555667888899999999999998875 5566777877654421
Q ss_pred ccchHhhhhccc------cCce--ecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 212 LEGDIFVMTIYR------AKGN--HRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 212 ~~~~~~~~~~~~------~~~~--~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+-.|.. .. ..|- .-|.+..++-+.++||+-+.+.++
T Consensus 235 ---g~vM~~-nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 235 ---GKVMLA-NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHH-HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 111111 00 0111 137888899999999998877654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.013 Score=50.36 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=44.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDM 150 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~ 150 (254)
+.+.+++.++ ..+. +|||+=||.|.++..+++... + +++++. +++++.|+.+ .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 4555666664 4444 799999999999999998864 4 888998 8888877653 6789987765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.065 Score=41.58 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC---------CCcEEEeCCCCCC-C----C------Cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKS-I----P------AA 157 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~---------~~i~~~~~d~~~~-~----p------~~ 157 (254)
...|+.+|||--.....+....++++ .+-+|.|++++.-++. .+++++..|+.++ + . ..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44999999999999999988877777 8888999887664432 2356899999865 2 1 12
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCY 182 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~ 182 (254)
-++++-.++..++.+++..+|+.+.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 4777888899999999988888763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.1 Score=41.50 Aligned_cols=96 Identities=24% Similarity=0.339 Sum_probs=64.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCC-C----C---eEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--------CC
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRF-I----C---EGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------PA 156 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~----~---~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~--------p~ 156 (254)
-+.+-.+++|+....|.++.-+.++.-. + . .++.+|+..|.. -+.|..+.+|+... . ..
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 3456789999999999999988887421 1 1 168888855532 25677788888765 1 22
Q ss_pred --ccEEEec-----cccccCCHH-H---HHHHHHHHHHhCCCCCEEEE
Q 025363 157 --ADAIFMK-----WVLTTWTDD-E---CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 --~D~v~~~-----~vlh~~~~~-~---~~~il~~~~~~L~pgG~l~i 193 (254)
+|+|++- --+|++..- + ....|.-...+|||||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 4999983 357876321 1 22455566778999999764
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.031 Score=49.29 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=67.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
+...+.+..+ ..+..+++|+=||.|.++..++++.. + ++++++ ++.++.++++ .+++|+.+|.++..+.
T Consensus 281 l~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--K-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--E-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 3444555553 56778999999999999999996643 4 899998 8888887764 5699999998776221
Q ss_pred -----c-cEEEeccccccCCHHHHH-HHHHHHHHhCCCCCEEEE
Q 025363 157 -----A-DAIFMKWVLTTWTDDECK-LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 -----~-D~v~~~~vlh~~~~~~~~-~il~~~~~~L~pgG~l~i 193 (254)
. |+|++-= |-..+. .+++.+.+ ++|-..++|
T Consensus 357 ~~~~~~~d~VvvDP-----PR~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 357 WWEGYKPDVVVVDP-----PRAGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred ccccCCCCEEEECC-----CCCCCCHHHHHHHHh-cCCCcEEEE
Confidence 2 8888721 112222 44444444 455555555
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.7 Score=35.05 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-----ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-----ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-----~D~v~~~~v 165 (254)
.+++||=|| -.-..+.+++..++..+ ++++|+ +.+++-.++. -+|+.+..|+-+++|+ .|+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 478999998 45555666666666667 999999 6666655432 3499999999999775 299887332
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGK 190 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~ 190 (254)
++.+....++.+..++||.-|.
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCc
Confidence 3457788999999999986553
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.18 Score=41.85 Aligned_cols=67 Identities=27% Similarity=0.218 Sum_probs=55.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMF 151 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~ 151 (254)
+..++++.+. ..+...++|.==|.|..+..+++++|...+.+++|. |.+++.+++. +|+.++..+|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4567788884 778899999999999999999999986544899999 8888888763 57888877663
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.066 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
.+....+|||||.|-+.--|.+. +.. +.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYP-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCC-cccccc
Confidence 35678999999999998887776 445 777773
|
; GO: 0008168 methyltransferase activity |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.15 Score=44.32 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCC---CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 141 PGVTHIGGDMFKS---IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 141 ~~i~~~~~d~~~~---~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++|+++.+++.+. .|. . |.+++..+.--+++++..+.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 7899999988775 333 3 999999999888999999999999999999999998665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.25 Score=36.56 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=69.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~ 156 (254)
+.++..+. -++..+.+|+|.|.|....+.++.. -.. .+++++ |..+.-++-. .+..|..-|.+.. +.+
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 33455553 4667899999999999988877664 334 677888 6655544321 6788888888876 555
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+ .++|+ .+ +.--..+-.+++.-|+.+.+++.+-+-+|+
T Consensus 139 y~~vviF-ga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIF-GA-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred cceEEEe-eh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 4 34332 11 111224456777788899999998876664
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.1 Score=39.13 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=61.9
Q ss_pred CCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC----CCCC----CCC-c-cEEEe
Q 025363 95 FKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD----MFKS----IPA-A-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d----~~~~----~p~-~-D~v~~ 162 (254)
..++.+||.+|+|. |..+..++++....+ +++++. ++..+.+++.....++... +.+. .+. . |+|+-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 56678999999987 889999999876445 777776 7766665543222322211 1111 122 2 77765
Q ss_pred cc---------------ccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KW---------------VLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~---------------vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.- +|+--. +....++++.+.|+|+|++++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCccccccccccccccccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 21 111111 124578899999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.19 Score=40.90 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCeEEEecCcccHHHHH---HHHHc--CCCCeEEEeec-h---HHHh---------------------------hCCCC-
Q 025363 98 VKRLVDVGGSAGDCLRM---ILQKH--RFICEGINFDL-P---EVVA---------------------------EAPSI- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~---l~~~~--~~~~~~~~~D~-~---~~~~---------------------------~~~~~- 140 (254)
...|+|+|+=.|..+.. +++.+ ++-+ +.++|. . +.-. .....
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 57899999988876654 34444 2334 788884 2 2111 00000
Q ss_pred ---CCcEEEeCCCCCCCCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 141 ---PGVTHIGGDMFKSIPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 141 ---~~i~~~~~d~~~~~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+++.++.|.|.+.+|.. +-|-+.++=.++ .+-....|+.++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997767653 222222211122 245678999999999999999986643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.61 Score=41.77 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=78.5
Q ss_pred cccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCC--CCCeEEEecCcccHHHHHHHHHcC----CCCeEEEeec-h
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFK--GVKRLVDVGGSAGDCLRMILQKHR----FICEGINFDL-P 131 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~~D~-~ 131 (254)
-|+.+++||---+.|+++.. ..+++..+.-+ ....|+-+|+|-|-+..+.+++-. .++ .++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecCc
Confidence 36666777766566666443 33444443122 245678889999999888777632 334 566665 6
Q ss_pred HHHhhCCCC------CCcEEEeCCCCCC-CC-C-ccEEEeccccccCCHHH-HHHHHHHHHHhCCCCCEEE
Q 025363 132 EVVAEAPSI------PGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTWTDDE-CKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 132 ~~~~~~~~~------~~i~~~~~d~~~~-~p-~-~D~v~~~~vlh~~~~~~-~~~il~~~~~~L~pgG~l~ 192 (254)
..+.-.+.. .+|+.+..||.+. .| + +|+++. ..|--+.|.+ ..+.|.-+-+.|||+|.-+
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 544333322 7899999999887 44 3 387664 3344444432 3467889999999997543
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.3 Score=34.42 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCC-CC-------C-c-cEEE
Q 025363 98 VKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKS-IP-------A-A-DAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~-~p-------~-~-D~v~ 161 (254)
...|+++|.-.|..+..++.. ....+ ++.+|+ ...-..+.+.++|.|++++-.++ +. + . -+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~k-vl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFK-VLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCce-EEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 568999998888777666653 22345 766665 33334444458999999998776 21 1 1 5566
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 202 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 202 (254)
+-..-|+. +.....|+-....|..|-++++.|...++.+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 66666754 6677888889999999999999999887654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.22 Score=41.54 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA 156 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~ 156 (254)
+..++ ..++.+|||..++.|.=+..+++... ... +++.|. +.-+...+.+ .++.....|.... .+.
T Consensus 78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGE-IVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred ccccc-ccccccccccccCCCCceeeeeecccchhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence 34443 56788999999999999999999887 455 888897 5554444332 4566665565443 122
Q ss_pred -ccEEEe------ccccccCC-------HHH-------HHHHHHHHHHhC----CCCCEEEEEccccC
Q 025363 157 -ADAIFM------KWVLTTWT-------DDE-------CKLIMENCYKAL----PAGGKLIACEPVLP 199 (254)
Q Consensus 157 -~D~v~~------~~vlh~~~-------~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~ 199 (254)
.|.|++ ..++..-+ .++ -.++|+++.+.+ ||||+|+.....+.
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 377765 11222111 111 236899999999 99999998766543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.8 Score=32.98 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred EecCcccHHHHHHHHHcC-CCC-eEEEeec-hHHHhhCCCC---------CCcEE-EeCCCCCC---C--CC--ccEEEe
Q 025363 103 DVGGSAGDCLRMILQKHR-FIC-EGINFDL-PEVVAEAPSI---------PGVTH-IGGDMFKS---I--PA--ADAIFM 162 (254)
Q Consensus 103 DvG~G~G~~~~~l~~~~~-~~~-~~~~~D~-~~~~~~~~~~---------~~i~~-~~~d~~~~---~--p~--~D~v~~ 162 (254)
=||=|.=.++..|+++++ ... .++.+|. .++.++-... ..+.+ ..-|+.+- . .. .|.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788889999887 333 1466666 4444444321 22222 22333332 2 12 288887
Q ss_pred ccccccCC----H-------HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 163 KWVLTTWT----D-------DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 163 ~~vlh~~~----~-------~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++----.. . +-...+++.+.++|+++|.+.|.-
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 55322200 1 224468889999999999998843
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.2 Score=38.66 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC--------------C------
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK--------------S------ 153 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~--------------~------ 153 (254)
.++.+|+=+|+| .|..+...++... .+ ++++|. ++.++.++.. ..++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 357899999998 5667777777765 47 999998 8888777664 22322211111 1
Q ss_pred ------CCCccEEEeccccccCCHHHHHHH-HHHHHHhCCCCCEEEEEcc
Q 025363 154 ------IPAADAIFMKWVLTTWTDDECKLI-MENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 ------~p~~D~v~~~~vlh~~~~~~~~~i-l~~~~~~L~pgG~l~i~d~ 196 (254)
..++|++|..-..- ......+ .++..+.+||||.++.+-.
T Consensus 240 ~~~~~~~~gaDVVIetag~p---g~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIP---GKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCCC---cccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 12349888755432 1112234 5999999999999877643
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.8 Score=39.18 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=41.6
Q ss_pred cCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc----C----CCCeEEEeec-hHH
Q 025363 65 KIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH----R----FICEGINFDL-PEV 133 (254)
Q Consensus 65 ~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----~----~~~~~~~~D~-~~~ 133 (254)
..|+....|...++. ..-+..+.+ ..+....++|+|+|+|.++..+++.. | .++ +..++. |+.
T Consensus 50 TApels~lFGella~----~~~~~wq~~-g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~~L 121 (370)
T COG1565 50 TAPELSQLFGELLAE----QFLQLWQEL-GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSPEL 121 (370)
T ss_pred echhHHHHHHHHHHH----HHHHHHHHh-cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCHHH
Confidence 356777777765554 233333444 34556789999999999999988764 3 345 667776 544
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.8 Score=37.24 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCCCCC--eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH
Q 025363 85 MTSVLEGYNGFKGVK--RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV 133 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~ 133 (254)
.+.++++. ..+++. +|||.=+|+|..+..++.+ +++ ++.++. |.+
T Consensus 75 ~~~l~kAv-glk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~v 122 (250)
T PRK10742 75 GEAVAKAV-GIKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVV 122 (250)
T ss_pred ccHHHHHh-CCCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHH
Confidence 35677777 467666 9999999999999999988 677 999997 544
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.6 Score=34.43 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=43.6
Q ss_pred EEEeec-hHHHhhCCCC-------CCcEEEeCCCCC---CCCC-c-cEEEecccc-----cc-C-CHHHHHHHHHHHHHh
Q 025363 125 GINFDL-PEVVAEAPSI-------PGVTHIGGDMFK---SIPA-A-DAIFMKWVL-----TT-W-TDDECKLIMENCYKA 184 (254)
Q Consensus 125 ~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~---~~p~-~-D~v~~~~vl-----h~-~-~~~~~~~il~~~~~~ 184 (254)
+.+||+ ++.++..+++ .|++++..+=.+ .+++ . |+++.+.-. |. . ..+.-...++++.+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 778898 7777776643 567776643322 2444 3 776653211 10 1 134566889999999
Q ss_pred CCCCCEEEEEcc
Q 025363 185 LPAGGKLIACEP 196 (254)
Q Consensus 185 L~pgG~l~i~d~ 196 (254)
|+|||.+.++-.
T Consensus 82 L~~gG~i~iv~Y 93 (140)
T PF06962_consen 82 LKPGGIITIVVY 93 (140)
T ss_dssp EEEEEEEEEEE-
T ss_pred hccCCEEEEEEe
Confidence 999999988654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.65 E-value=3.1 Score=35.79 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=63.8
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCC--------CCC-C-CccEEEeccc
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMF--------KSI-P-AADAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~--------~~~-p-~~D~v~~~~v 165 (254)
..+|+=+|+| .|.++..+++.....+ +++.|. ++-++.+++........-.-. +.. + ..|+++-..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 3489999999 4777788888887777 999999 888888876321121111111 011 1 2388885443
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
....+..+.++++|||++++.-....+
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998776554
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.84 Score=37.50 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCC
Q 025363 111 CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG 189 (254)
++.+|.++.+..+ ++++|. +...+.+.+.+-+.-...+ .+.+.++|+|++.- |.....++++++...+++|+
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence 3567778888888 999998 7777777554333333322 12245569988754 45677889999999888886
Q ss_pred EEE
Q 025363 190 KLI 192 (254)
Q Consensus 190 ~l~ 192 (254)
.+.
T Consensus 74 iv~ 76 (258)
T PF02153_consen 74 IVT 76 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.99 E-value=4.9 Score=32.59 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-----hHHHhhCCCCCCcEEEeCCCCCCCC------CccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-----PEVVAEAPSIPGVTHIGGDMFKSIP------AADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-----~~~~~~~~~~~~i~~~~~d~~~~~p------~~D~v~ 161 (254)
+.+++.+||-+|+++|.....+.+-. |... +.+++. -+.+.-++++.+|--+.-|+.-+.. --|+|+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEe
Confidence 67899999999999999988887764 4444 444443 2344455555666555556654421 116665
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .+-+ ++++..+.-+..--||+||.++|.=
T Consensus 232 a-Dvaq---pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 A-DVAQ---PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred c-cCCC---chhhhhhhhhhhhhhccCCeEEEEE
Confidence 4 2222 3455555667888999999888753
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.4 Score=34.76 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=48.9
Q ss_pred CCeEEEecCcc-c-HHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGGSA-G-DCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~G~-G-~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
..+|.=||+|. | .++..+.+.....+ ++++|. ++..+.+++..-+.....+..+...++|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 35788888774 2 23333443322235 888898 6655554432211111112111134459888744 33444
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 025363 175 KLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i 193 (254)
..+++.+...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 6778888888888875543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.86 E-value=3.7 Score=39.00 Aligned_cols=151 Identities=9% Similarity=0.000 Sum_probs=86.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFKS 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~~ 153 (254)
-.+|.=||+|+=...++..-...+.. ++++|. ++.++.+... .||++. .|. +.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 46789999987444444444444778 999998 6665543211 355543 233 23
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccCc
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAKG 226 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 226 (254)
+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-............++.+. +-...|
T Consensus 390 ~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 390 FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCC
Confidence 4456988754 44444 4456899999999999987766555443210000000000111111100 000011
Q ss_pred ---eecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 227 ---NHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 227 ---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
...+.+...+++++.|...+.+.+.+|+
T Consensus 467 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 467 EKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 1234567788899999999999888885
|
|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.5 Score=33.62 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.0
Q ss_pred cEEEeccccccCCH----------HHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 158 DAIFMKWVLTTWTD----------DECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 158 D~v~~~~vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|+|+++++||+++- +...+++++++++|+|+..|+....+.
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999864 456788889999999987777655543
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.95 E-value=0.87 Score=39.94 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=52.2
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CCC--ccEEEecccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPA--ADAIFMKWVL 166 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p~--~D~v~~~~vl 166 (254)
.-+||||.|||-++....++..+ . +++++. .+|.+.+++- ++|+++.---.+- .|. +|+++...+.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-S-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-e-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh
Confidence 46899999999999988888643 4 777776 6777666542 5566654332222 222 3655543333
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCC
Q 025363 167 TTWTDDECKLIMENCYKAL-PAG 188 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L-~pg 188 (254)
-.+-.+.+..-++++.+.| +||
T Consensus 146 tEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 146 TELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhccccchhHHHHHHHhcccC
Confidence 2222233445566666655 554
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=85.67 E-value=7.5 Score=30.97 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC--------------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-------------------------------- 140 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-------------------------------- 140 (254)
-+...++-|-.||+|.++.-+.-.+++ ++++++-|+ +++++.++++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 456789999999999988877666553 334677788 7777766531
Q ss_pred ----------------CCcEEEeCCCCCCC-------CCc-cEEEecc---ccccCCH----HHHHHHHHHHHHhCCCCC
Q 025363 141 ----------------PGVTHIGGDMFKSI-------PAA-DAIFMKW---VLTTWTD----DECKLIMENCYKALPAGG 189 (254)
Q Consensus 141 ----------------~~i~~~~~d~~~~~-------p~~-D~v~~~~---vlh~~~~----~~~~~il~~~~~~L~pgG 189 (254)
....+...|+|++. +.. |+|+.-- -.-+|.. +-...+|..++++|.+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 23567888998852 112 8888622 2224543 446789999999996566
Q ss_pred EEEEEc
Q 025363 190 KLIACE 195 (254)
Q Consensus 190 ~l~i~d 195 (254)
.+++++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.43 E-value=4.9 Score=33.43 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=52.0
Q ss_pred CeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe-CCC-CCCCCCccEEEeccccccCCHHH
Q 025363 99 KRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG-GDM-FKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 99 ~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~-~d~-~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
.+|+=+|.| .|.++..+.++..... +++.|. ...++.+.... +.... -+. ......+|+|+++- |-..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Vivav-----Pi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVAV-----PIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEec-----cHHH
Confidence 456666655 4556666666666655 777887 55555554432 22221 222 22244569999865 4456
Q ss_pred HHHHHHHHHHhCCCCCE
Q 025363 174 CKLIMENCYKALPAGGK 190 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~ 190 (254)
...+++++...|+||..
T Consensus 77 ~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 77 TEEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHHhcccCCCCCE
Confidence 67889999999998864
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.6 Score=35.84 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-----CCCCeEEEeec
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-----RFICEGINFDL 130 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-----~~~~~~~~~D~ 130 (254)
-+.+...++|+|||.|.++..+.+.. +... ++.+|.
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 35677899999999999999999998 4556 888997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=84.77 E-value=4.8 Score=38.30 Aligned_cols=152 Identities=9% Similarity=-0.008 Sum_probs=86.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFK 152 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~ 152 (254)
+-.+|.=||+|+=...++.+-...+.. ++++|. ++.++.+.+. .||++.. |. +
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-A 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-H
Confidence 446788999886555555444445778 999998 6665543321 3455432 22 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccC
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAK 225 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 225 (254)
.+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-..........+.++.+. +-...
T Consensus 389 ~~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred HhcCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 24556988864 55544 3456899999999999988776555444211000000000111111110 00011
Q ss_pred ce---ecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 GN---HRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
|. ..+.+...+++++.|-..+.+...+|+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 11 124567788899999999988888875
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=2.6 Score=34.59 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCC-c--cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPA-A--DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~-~--D~v~~~~vlh~~~~ 171 (254)
+.+++.-+|+|.-.|.++-.|.++ ++. ++.+|...|.+..-..++|+.+..|-|...|. . |-.+|-.|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~-V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------ 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMR-VYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------ 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceE-EEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------
Confidence 457899999999999999999998 677 99999877776666668999999999988663 2 65555333
Q ss_pred HHHHHHHHHHHHhCCCC
Q 025363 172 DECKLIMENCYKALPAG 188 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pg 188 (254)
++..++-..+...|..|
T Consensus 280 EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 EKPARVAALIAKWLVNG 296 (358)
T ss_pred cCcHHHHHHHHHHHHcc
Confidence 44556666777777655
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.35 E-value=3.5 Score=36.54 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCeEEEecCcccH--HHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC----C-ccEEE
Q 025363 98 VKRLVDVGGSAGD--CLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP----A-ADAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G~G~--~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p----~-~D~v~ 161 (254)
...+.|+|.|.|. .+..++..-..-. +..+|. ..|....... ..+.....-|++. .| . .|+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~-~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKRE-YSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccce-eEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3567888876554 4444443322223 677787 5555444321 1111111123222 22 2 39999
Q ss_pred eccccccCCHH-HHHHHHHH-HHHhCCCCCEEEEEccccC
Q 025363 162 MKWVLTTWTDD-ECKLIMEN-CYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 162 ~~~vlh~~~~~-~~~~il~~-~~~~L~pgG~l~i~d~~~~ 199 (254)
+.+++|..... ....+.++ .++..++|++++++|....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999986532 33344444 4556789999999986433
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=84.34 E-value=7.4 Score=33.89 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHH----HHHHc---CCCCeEEEeec
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRM----ILQKH---RFICEGINFDL 130 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~----l~~~~---~~~~~~~~~D~ 130 (254)
.+.|++++. -.....|+|+|-|.|.-=.. |+++. |.++ +|+++.
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~ 149 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGP 149 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccC
Confidence 456888885 56778899999999974333 44432 4556 888887
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.25 E-value=5.9 Score=32.84 Aligned_cols=81 Identities=14% Similarity=-0.017 Sum_probs=47.4
Q ss_pred eEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+|.=||+|. |.++..|.++ +.+ ++++|. ++..+.+.....+.....+. +...++|+|++.- +.....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 466677663 4455555444 446 888998 66666554432222211111 1133459988753 4566678
Q ss_pred HHHHHHHhCCCCC
Q 025363 177 IMENCYKALPAGG 189 (254)
Q Consensus 177 il~~~~~~L~pgG 189 (254)
+++++...++|+.
T Consensus 73 ~~~~l~~~l~~~~ 85 (279)
T PRK07417 73 PSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHhCCCCc
Confidence 8899998888774
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=84.07 E-value=11 Score=30.06 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCeEEEecCccc----HHHHHHHHHcCCCCeEEEeec-hHHHh---hCCCC---CCcEEEeCCCCCC-CCC---ccEEEe
Q 025363 98 VKRLVDVGGSAG----DCLRMILQKHRFICEGINFDL-PEVVA---EAPSI---PGVTHIGGDMFKS-IPA---ADAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G----~~~~~l~~~~~~~~~~~~~D~-~~~~~---~~~~~---~~i~~~~~d~~~~-~p~---~D~v~~ 162 (254)
.+.|+++.++.| ..+...+.+..+.+.+++++- .+..+ ..... +.++|+.++..+. .+. .|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 567888854432 344445555555552333332 22211 11111 4578888886544 433 488776
Q ss_pred ccccccCCHHHHH-HHHHHHHHhCCCCCEEEEEccccCC
Q 025363 163 KWVLTTWTDDECK-LIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 163 ~~vlh~~~~~~~~-~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
-.= .++.. ++|+.+. +.|.|.+++.......
T Consensus 122 Dc~-----~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r 153 (218)
T PF07279_consen 122 DCK-----REDFAARVLRAAK--LSPRGAVVVCYNAFSR 153 (218)
T ss_pred eCC-----chhHHHHHHHHhc--cCCCceEEEEeccccC
Confidence 433 34445 6666544 5577888888876653
|
The function of this family is unknown. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.66 E-value=6.3 Score=37.46 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=84.2
Q ss_pred CCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMF 151 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~ 151 (254)
+-.+|.=||+|+=...++..-. ..+.. ++.+|. ++.++.+... .+|++.. |.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~- 384 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY- 384 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-
Confidence 3578899999874444333333 44677 999998 6655543210 3555542 22
Q ss_pred CCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh--------hccc
Q 025363 152 KSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM--------TIYR 223 (254)
Q Consensus 152 ~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 223 (254)
+.+.++|+|+=. +..+. +-..++++++-+.++|+..|......++-..-............++.+ ....
T Consensus 385 ~~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 385 RGFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred HHhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 234456988764 44443 445689999999999998877655444321100000000011111110 0000
Q ss_pred cC--ceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 224 AK--GNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 224 ~~--~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
.+ ...-+.+...+++++.|...+.+.+.+|+
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 10 11124566778889999999988888875
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.48 E-value=3.1 Score=39.11 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHc-------C-----CCCeEEEeec-h---HHHhhCC----------------------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKH-------R-----FICEGINFDL-P---EVVAEAP---------------------- 138 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~-------~-----~~~~~~~~D~-~---~~~~~~~---------------------- 138 (254)
..-+|+|+|=|+|......++.+ | .+. ++.++. | +-+..+.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~-~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLH-FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34789999999999887777655 3 234 666664 2 1111110
Q ss_pred CC-------C--CcEEEeCCCCCCCC---C-ccEEEecccc-----ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 139 SI-------P--GVTHIGGDMFKSIP---A-ADAIFMKWVL-----TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 139 ~~-------~--~i~~~~~d~~~~~p---~-~D~v~~~~vl-----h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.. . ++++..||+.+.++ . .|++++--.- ..|+ ..+|+++++.++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~----~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS----PNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhcc----HHHHHHHHHHhCCCCEEEE
Confidence 00 1 23345577655433 2 3887763211 1243 4689999999999988764
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.13 E-value=21 Score=28.58 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=48.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC--CCeEEEee--chHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFD--LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D--~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~ 172 (254)
....||-.||..|...-++++.+.. .. +.... ++.|...+.+ .++.....|.. .++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~-V~AtaR~~e~M~~L~~~-~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYL-VYATARRLEPMAQLAIQ-FGLKPYKLDVS------------------KPE 65 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeE-EEEEccccchHhhHHHh-hCCeeEEeccC------------------ChH
Confidence 3568999999999999999988743 33 43333 2444444332 34555555542 457
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 025363 173 ECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i 193 (254)
++.++..+++.- |.|+|=+
T Consensus 66 ~V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--CCCceEE
Confidence 778888888876 7887644
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=81.95 E-value=6.4 Score=37.58 Aligned_cols=152 Identities=12% Similarity=0.067 Sum_probs=85.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFK 152 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~ 152 (254)
+-.+|.=||+|+=...++..-...+.. ++.+|. ++.++.+... .+|++. .|+ +
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-S 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H
Confidence 346788899986444444444444778 999998 7666553321 345543 233 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccC
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAK 225 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 225 (254)
.+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-.....+....+.++.+. +-...
T Consensus 411 ~~~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 411 GFKNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred HhccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 34456887753 55544 4456899999999999988877655544211000000000111111110 00011
Q ss_pred ce---ecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 GN---HRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
+. .-+.+...+++++.|-..+.+...+|+
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF 519 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc
Confidence 11 124556678889999999888888875
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.46 E-value=6.4 Score=33.37 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCC--CcEEEeCCC-CCCC--------CC--cc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIP--GVTHIGGDM-FKSI--------PA--AD 158 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~--~i~~~~~d~-~~~~--------p~--~D 158 (254)
.++.+.+||=+|+| .|.++...++++...+ +++.|+ +.-++.+++.. .+......- .+.+ .. .|
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 46788999999999 5777888888888778 999999 88888887741 111111110 0000 11 16
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+.+-...++ ..++....++++||.+++...-.+
T Consensus 245 ~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 245 VTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred eEEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 666544443 456677889999999888775443
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=81.19 E-value=2 Score=31.07 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP 138 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~ 138 (254)
.+.+|+|||++-|..++.++-+ +++.++.++. |...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHH
Confidence 3789999999999999999977 4443788876 54444443
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=80.12 E-value=19 Score=25.65 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CC---CccEEEeccccccCCHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IP---AADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p---~~D~v~~~~vlh~~~~~~ 173 (254)
..+|++||-|.=......++... .. +++.|+.+- .+. ..++++.-|.+++ .. ++|+|..-. ++.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g-~d-v~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE 82 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG-FD-VLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE 82 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC-Cc-EEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCHH
Confidence 55999999886665555444442 56 888898332 222 5799999999988 33 348887633 4566
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 025363 174 CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i 193 (254)
....+-.+.++++ ..++|
T Consensus 83 l~~~ildva~aVg--a~l~I 100 (129)
T COG1255 83 LQSAILDVAKAVG--APLYI 100 (129)
T ss_pred HHHHHHHHHHhhC--CCEEE
Confidence 6666666666654 34444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 254 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-52 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-47 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 8e-47 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 6e-45 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-42 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 9e-24 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 1e-23 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-22 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 1e-19 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 1e-19 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-19 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-14 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 3e-08 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 2e-07 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-06 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 8e-06 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 9e-06 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 1e-05 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 1e-04 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 1e-87
Identities = 92/253 (36%), Positives = 141/253 (55%), Gaps = 3/253 (1%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y + K L + +G+S A L + LM W + A+LD I PF K +G A+
Sbjct: 107 YGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFE 165
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+G P N + + M S+ +LE Y+GF+G+ LVDVGG G + I +
Sbjct: 166 YHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPT 225
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I +G+NFDLP V++EAP PGVTH+GGDMFK +P+ D I MKW+L W+D C +++NC
Sbjct: 226 I-KGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNC 284
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALPA GK++ + +LP + + ++ + D+ ++ + G R E+EF+ L A
Sbjct: 285 YDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGA 343
Query: 242 GFPHLRLYRVLDY 254
GF ++ +
Sbjct: 344 GFTGVKSTYIYAN 356
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 2e-86
Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 6/251 (2%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L+ +GK LV D A + AL+ +W +A++D I+ F VHG Y
Sbjct: 113 VYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
+ GK +MN + K+M V M +LE Y GF+G+ LVDVGG +G L +I+ K+
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP 232
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP+V+ AP + G+ H+GGDMF S+P DA+ +K V W+D++C + N
Sbjct: 233 LI-KGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSN 291
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
C+KAL GK+I E +LP++ N S+ ++ + D + + RTE+++++L
Sbjct: 292 CHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR--ERTEKQYEKLSKL 349
Query: 241 AGFPHLRLYRV 251
+GF ++V
Sbjct: 350 SGF---SKFQV 357
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 2e-85
Identities = 99/250 (39%), Positives = 143/250 (57%), Gaps = 6/250 (2%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y L + K L + +G+S AP++L L+ W + AIL+ I PF K +G +
Sbjct: 109 YGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIFD 167
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+G +N + K MS S M +LE YNGF+G+ +VDVGG G MI+ K+
Sbjct: 168 YHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPS 227
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
I INFDLP V+ +AP+ GV H+GGDMF +P DAIF+KW+ W+D+ C +++NC
Sbjct: 228 I-NAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNC 286
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALP GK+I E +LP + S T+ ++ D +M Y G RTE+EF+ L +
Sbjct: 287 YAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDA-LMLAYNPGGKERTEKEFQALAMAS 345
Query: 242 GFPHLRLYRV 251
GF R ++V
Sbjct: 346 GF---RGFKV 352
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 8e-84
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 8/256 (3%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+LT + LV L AP V L + + K I + + F G +
Sbjct: 94 YALTVASELLVRG-SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWD 152
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
+ K PE N AM+ S ++ + F G++ +VDVGG G ++I +
Sbjct: 153 FLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK 212
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+ + I FD P+VV +T++GGDMF SIP ADA+ +K++L WTD +C I++ C
Sbjct: 213 L-KCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271
Query: 182 YKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238
+A+ GK+ + V+ +E+Q T+ L D+ + + G R E+E+K+L
Sbjct: 272 KEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLF 328
Query: 239 FFAGFPHLRLYRVLDY 254
AGF H ++ + +
Sbjct: 329 IEAGFQHYKISPLTGF 344
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 6e-78
Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 10/259 (3%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAIL-DPTIEPFLKVHGEPAY 60
YSLT K L++ + V + + MW K D F GE +
Sbjct: 96 YSLTPPSKLLISGKPT-CLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFW 154
Query: 61 SYYGKIPEMNGLMR--KAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK 118
+ K E + L AM+ S F + E F+G++ LVDVGG G ++I +
Sbjct: 155 DFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEI 214
Query: 119 HRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 178
+ FD P+VV + +GGDMFKSIP+ADA+ +KWVL W D++ I+
Sbjct: 215 FPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKIL 273
Query: 179 ENCYKALPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235
+N +A+ GK+I + + + S++ T L+ D+ ++T++ K RT+QE++
Sbjct: 274 KNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGK--ERTKQEWE 331
Query: 236 QLGFFAGFPHLRLYRVLDY 254
+L + AGF ++ + +
Sbjct: 332 KLIYDAGFSSYKITPISGF 350
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 6e-78
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 15/258 (5%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
++LT+ G +L +D + +L +M V A+ F + G +
Sbjct: 92 FALTDKGAALRSD-SPVPARAGILMFTDTMFWTMSHRVASALGPERP-AFADIFGSSLDA 149
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+ E+ L + M VS + F + DVGG G L +L++H
Sbjct: 150 YFDGDAEVEALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPG 208
Query: 122 ICEGINFDLPEVVA----EAPSIPG-VTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176
+ +G+ D EVVA +AP + G + GD + +P AD +K +L W D++
Sbjct: 209 L-QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVR 267
Query: 177 IMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236
I+ NC + +PA G+++ + V+P+ ++ Q E D ++ + RT E +
Sbjct: 268 ILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSK----EMDFMMLAARTGQ--ERTAAELEP 321
Query: 237 LGFFAGFPHLRLYRVLDY 254
L AG R+
Sbjct: 322 LFTAAGLRLDRVVGTSSV 339
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 2e-75
Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 19/258 (7%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
++ + L+ D A W + ++ F +G +
Sbjct: 110 FAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEA-SFDVANGTSFWQ 167
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
+ P+ L +AM VS+ V Y+ F G VD+GG G + +L
Sbjct: 168 LTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPG 226
Query: 122 ICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDE 173
+ G + P V EA + + GD F++IP AD +K VL W DD+
Sbjct: 227 L-RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDD 285
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
I+ A+ +L+ + ++ + S L D+ ++ + R+E E
Sbjct: 286 VVRILRRIATAMKPDSRLLVIDNLIDERPAAST-----LFVDLLLLVLVGGA--ERSESE 338
Query: 234 FKQLGFFAGFPHLRLYRV 251
F L +G R
Sbjct: 339 FAALLEKSGLRVERSLPC 356
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 1e-74
Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 19/258 (7%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
+ TE+G+ L D A + L + + AI + ++G+P Y
Sbjct: 90 FVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRP-TYESIYGKPFYE 148
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
P++ ++ + Y + V+ ++DVGG G I ++
Sbjct: 149 DLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPH 207
Query: 122 ICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDE 173
+ ++ V A S V + GD F+ +P ADAI + +VL W D +
Sbjct: 208 V-SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHD 266
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
I+ C +AL GG+++ E +++ +++ L D+ ++ RT ++
Sbjct: 267 AVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTEL---DLRMLVFLGGA--LRTREK 321
Query: 234 FKQLGFFAGFPHLRLYRV 251
+ L AG + V
Sbjct: 322 WDGLAASAGL---VVEEV 336
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 6e-73
Identities = 51/261 (19%), Positives = 86/261 (32%), Gaps = 15/261 (5%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
T +G L A L + + + + +G P +
Sbjct: 89 LRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWE 147
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
+ MS + + Y + V+ ++DVGG G L I +
Sbjct: 148 DLSADVALADSFDALMSCDEDLAYEAPADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPH 206
Query: 122 ICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDE 173
+ G +L A VT GD FK +P AD + + +VL W+D++
Sbjct: 207 L-RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDED 265
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
I+ C +AL GG+L+ + + + LL D+ ++T + RT E
Sbjct: 266 ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL--DLRMLTFMGGR--VRTRDE 321
Query: 234 FKQLGFFAGFPHLRLYRVLDY 254
L AG
Sbjct: 322 VVDLAGSAGLALASERTSGST 342
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-72
Identities = 54/258 (20%), Positives = 88/258 (34%), Gaps = 23/258 (8%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y LTE G+ L D + + + +I + +G +
Sbjct: 76 YGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQP-AYPVRYGTSFWE 134
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
G P ++ MS T + Y + + +VDVGG +G L +L H
Sbjct: 135 DLGSDPVLSASFDTLMSHHLELDYTGIAAKY-DWAALGHVVDVGGGSGGLLSALLTAHED 193
Query: 122 ICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDE 173
+ G DL + A + G F +PA A + VL W D
Sbjct: 194 L-SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLS 252
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
I+ C +A +GG ++ E V D+ A D+ ++T + K R+ E
Sbjct: 253 AVAILRRCAEAAGSGGVVLVIEAVAGDE-------HAGTGMDLRMLTYFGGK--ERSLAE 303
Query: 234 FKQLGFFAGFPHLRLYRV 251
+L AG +
Sbjct: 304 LGELAAQAGL---AVRAA 318
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 4e-70
Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 22/261 (8%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+ T L+ DVEG S+ VL + + + W +A+L T F GE YS
Sbjct: 79 YANTPTSH-LLRDVEG-SFRDMVL-FYGEEFHAAWTPACEALLSGTP-GFELAFGEDFYS 134
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y + P+ AM ++ F + + F+G + VDVGG +G+ + ILQ
Sbjct: 135 YLKRCPDAGRRFLLAMKASNLAFH-EIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPS 191
Query: 122 ICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDE 173
G+ D + A V+ +GGDM + +P+ D + ++ +
Sbjct: 192 A-RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAA 250
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
++ NC +A+ G+++ E + E L D+ + + HRT +E
Sbjct: 251 SLRLLGNCREAMAGDGRVVVIERTISAS--EPSPMSVLW--DVHLFMACAGR--HRTTEE 304
Query: 234 FKQLGFFAGFPHLRLYRVLDY 254
L GF R+ +
Sbjct: 305 VVDLLGRGGFAVERIVDLPME 325
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 9e-57
Identities = 43/261 (16%), Positives = 94/261 (36%), Gaps = 18/261 (6%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
+SLTE + + + + L + + +
Sbjct: 101 WSLTEFADYMFSPTPK-EPNLHQTPVAKAMAFLADDFYMG--LSQAVRGQ--KNFKGQVP 155
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y E N + + + +LE GVK+++DVGG GD +L+
Sbjct: 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE 214
Query: 122 ICEGINFDLPEVVAEAPSIPG-------VTHIGGDMFK-SIPAADAIFMKWVLTTWTDDE 173
+ + +LP + + I D++K S P ADA+ +L + +
Sbjct: 215 L-DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQL 273
Query: 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233
++ + + A+ +GG+L+ + V+ D N + + I + + + +
Sbjct: 274 STIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHY---ILGAGMPFSVLGFKEQAR 330
Query: 234 FKQLGFFAGFPHLRLYRVLDY 254
+K++ G+ + + R D+
Sbjct: 331 YKEILESLGYKDVTMVRKYDH 351
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 4e-51
Identities = 44/253 (17%), Positives = 79/253 (31%), Gaps = 25/253 (9%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
+ T + + +T P V HQ WP + + + K S
Sbjct: 93 FRNTALTERYLTTTSADYIGPIVE--HQYLQWDNWPRLGEILRSE------KPLAFQQES 144
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
+ AM +S P + V E F + ++D+ G G L +L++H
Sbjct: 145 RFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQ 203
Query: 122 ICEGINFDLPEVVAEAPSIPG-------VTHIGGDMFKSIPA----ADAIFMKWVLTTWT 170
+ G +DLP A V ++ + AD + + L +
Sbjct: 204 L-TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFD 262
Query: 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230
E + ++ + + GG L+ + DD + A + V T G
Sbjct: 263 AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALS-ADFSLHMMVNT---NHGELHP 318
Query: 231 EQEFKQLGFFAGF 243
+ AG
Sbjct: 319 TPWIAGVVRDAGL 331
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 5e-51
Identities = 45/264 (17%), Positives = 82/264 (31%), Gaps = 28/264 (10%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y LT + + + + + + A+L G A S
Sbjct: 76 YRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLK----------GGTAIS 125
Query: 62 YYGKI---PEMNGLMRKAMSGVSVPFMTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQ 117
G + + KAMS + + + N +++D+ S G + Q
Sbjct: 126 SEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQ 185
Query: 118 KHRFICEGINFDLPEVVAEAPSIPG-------VTHIGGDMFKS--IPAADAIFMKWVLTT 168
+ E D V+ A I G F+ D + + L
Sbjct: 186 HNPNA-EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH 244
Query: 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH 228
+ C+ ++ AL GK+I + + D A + VM G+
Sbjct: 245 FDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAF---SL-VMLATTPNGDA 300
Query: 229 RTEQEFKQLGFFAGFPHLRLYRVL 252
T E++ + AGF H +L+ +
Sbjct: 301 YTFAEYESMFSNAGFSHSQLHSLP 324
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 4e-48
Identities = 45/267 (16%), Positives = 90/267 (33%), Gaps = 22/267 (8%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHG--EPA 59
Y L + G L+ D A ++ + D + +A+L+ LKV G
Sbjct: 87 YVLAKAGWFLLND----KMARVNMEFNHDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTI 141
Query: 60 YSYYGKIPE-MNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK 118
Y ++PE + S LE KRL+D+GG+ G +Q
Sbjct: 142 YEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQY 200
Query: 119 HRFICEGINFDLPEVVAEAPSIPG-------VTHIGGDMFK---SIPA-ADAIFMKWVLT 167
++ + E DLP+ + + G ++ P DA++M L
Sbjct: 201 NKEV-EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLD 259
Query: 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGN 227
++++E I+ +++ K+ E + E+ L + ++ +
Sbjct: 260 CFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASY-CLTQISLYFTAMANGNSK 318
Query: 228 HRTEQEFKQLGFFAGFPHLRLYRVLDY 254
+ + AG + +
Sbjct: 319 MFHSDDLIRCIENAGLEVEEIQDNIGL 345
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 6e-10
Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 18/207 (8%)
Query: 59 AYSYYGKIPEMN-------GLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDC 111
A +Y+ +IP G + S F+ L G +D G G
Sbjct: 34 AKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRI 93
Query: 112 LRMILQKHRFICEGINFDLPEVVAEAPSIPG------VTHIGGDMFKSIPAA---DAIFM 162
+ +L + ++ + + +A + G + + P D I++
Sbjct: 94 TKRLLLPLFREVDMVDIT-EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 152
Query: 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 222
+WV+ TD + C +L G ++ + + + ++ V I
Sbjct: 153 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII 212
Query: 223 RAKGNHRTEQEFKQLGFFAGFPHLRLY 249
+ G +E +Q H+ +
Sbjct: 213 CSAGLSLLAEE-RQENLPDEIYHVYSF 238
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 4e-08
Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 12/201 (5%)
Query: 59 AYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKG--VKRLVDVGGSAGDCLRMIL 116
A Y+ +P + M V + G R +D G G + +L
Sbjct: 53 ALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLL 112
Query: 117 QKHRFICEGINFDLPEVVAEA----PSIPGVTHIGGDMFKSIPAA---DAIFMKWVLTTW 169
K + + ++ EA +P I M + D I ++W
Sbjct: 113 TKLYATTDLLEPV-KHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171
Query: 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRT-RALLEGDIFVMTIYRAKGNH 228
TD + ++C +AL G + E D + +L DI ++ G
Sbjct: 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
Query: 229 RTEQEFKQLGFFAGFPHLRLY 249
++ Q + L++Y
Sbjct: 232 VVKEA-FQEEWPTDLFPLKMY 251
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 22/170 (12%)
Query: 99 KRLVDVGGSAGDCLRMILQKH---RFICEGINFDLPEVVAEA----PSIPGVTHIGGDM- 150
++D+G G +++K+ F ++ +++ A V +I D
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEATFT--LVDMS-EKMLEIAKNRFRGNLKVKYIEADYS 102
Query: 151 -FKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ--- 206
+ D + + D++ K + + Y L G I + V + +
Sbjct: 103 KYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNK 162
Query: 207 -------RTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249
L E +I + AGF +
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.8 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.78 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.77 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.77 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.77 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.76 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.75 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.75 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.75 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.74 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.74 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.74 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.74 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.73 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.73 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.73 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.73 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.71 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.71 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.71 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.7 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.7 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.7 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.69 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.69 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.67 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.67 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.67 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.65 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.65 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.65 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.64 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.63 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.61 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.61 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.61 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.6 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.59 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.58 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.57 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.56 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.55 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.54 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.54 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.53 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.52 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.52 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.52 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.47 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.46 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.45 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.43 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.42 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.41 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.41 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.41 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.41 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.4 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.4 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.39 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.39 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.39 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.38 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.38 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.38 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.37 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.37 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.37 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.37 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.36 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.34 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.34 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.34 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.34 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.33 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.32 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.32 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.32 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.32 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.31 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.31 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.31 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.3 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.3 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.3 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.28 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.28 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.27 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.27 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.27 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.26 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.25 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.24 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.24 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.24 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.24 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.24 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.23 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.22 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.22 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.21 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.2 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.2 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.2 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.2 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.19 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.18 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.17 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.17 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.17 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.16 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.16 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.16 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.16 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.15 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.14 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.14 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.14 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.13 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.13 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.12 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.11 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.11 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.1 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.1 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.09 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.09 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.09 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.09 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.08 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.06 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.06 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.06 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.05 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.05 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.04 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.04 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.04 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.04 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.04 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.02 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.01 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.01 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.99 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.98 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.95 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.94 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.94 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.93 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.92 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.91 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.91 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.91 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.9 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.88 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.88 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.86 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.83 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.74 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.71 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.7 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.69 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.68 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.68 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.67 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.64 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.63 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.6 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.54 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.54 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.53 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.53 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.5 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.5 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.48 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.48 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.47 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.46 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.44 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.41 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.38 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.36 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.34 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.28 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.24 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.21 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.19 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.18 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.1 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.1 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.06 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.04 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.0 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.95 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.89 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.87 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.84 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.79 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.73 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.69 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.69 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.69 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.68 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.57 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.56 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.55 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.46 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.44 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.44 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.4 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.28 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.27 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.24 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.11 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.86 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.62 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.54 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.73 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.11 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 92.98 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.89 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.06 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.39 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.0 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 89.3 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 89.23 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.66 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 88.62 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 88.4 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 88.07 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.19 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 86.61 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 86.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 86.13 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 85.99 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 85.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 85.61 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 85.22 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.11 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 85.01 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 84.75 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 83.86 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 83.73 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 83.43 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 83.03 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 82.69 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 81.91 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 81.87 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 81.6 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 80.84 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 80.55 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 80.38 |
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=303.28 Aligned_cols=250 Identities=36% Similarity=0.700 Sum_probs=223.5
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||+.|+.|+.++++.++++++.+..++.++..|.+|.+++++|+ ++++.++|.++|+++.++|+..+.|+++|...
T Consensus 106 ~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 184 (364)
T 3p9c_A 106 SYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNH 184 (364)
T ss_dssp EEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 39999999999888777899999988777888999999999999998 89999999999999999999999999999988
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEE
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAI 160 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v 160 (254)
+....+.+++.++.+++..+|||||||+|.++..+++++|+++ ++++|+|++++.+++.++|+|+.+|+++++|.+|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v 263 (364)
T 3p9c_A 185 SIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTI 263 (364)
T ss_dssp HHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEE
T ss_pred hHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEE
Confidence 8888888999985588889999999999999999999999999 999999999999988899999999999887767999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++.+++|+|+++++.++|++++++|||||+|+|.|...++.............+++.|+. ...+|++||.+||.++|++
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~ 342 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARG 342 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHH
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999988654433222333457888774 3568999999999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+.+++.++.+
T Consensus 343 AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 343 AGFTGVKSTYIYA 355 (364)
T ss_dssp TTCCEEEEEEEET
T ss_pred CCCceEEEEEcCC
Confidence 9999999998765
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=300.19 Aligned_cols=250 Identities=38% Similarity=0.726 Sum_probs=223.0
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||+.|+.|+.++++.++++++.+..++..+..|.+|.+++++|. ++++.++|.++|+|+.++|+..+.|+++|...
T Consensus 108 ~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 186 (368)
T 3reo_A 108 LYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSN 186 (368)
T ss_dssp EEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhh
Confidence 39999999999888777899999988777788999999999999998 89999999999999999999999999999988
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEE
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAI 160 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v 160 (254)
+....+.+++.++.+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+|+.+|+++++|.+|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v 265 (368)
T 3reo_A 187 STITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAI 265 (368)
T ss_dssp HHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEE
T ss_pred hhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEE
Confidence 8888888999885588889999999999999999999999999 999999999999988889999999999887767999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++.+++|+|+++++.++|++++++|||||+|+|.|...++.............+++.|+. ...++++||.++|.++|++
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~ 344 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMA 344 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654433333334567877775 3457899999999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+.+++.++.+
T Consensus 345 AGF~~v~~~~~~~ 357 (368)
T 3reo_A 345 SGFRGFKVASCAF 357 (368)
T ss_dssp TTCCEEEEEEEET
T ss_pred CCCeeeEEEEeCC
Confidence 9999999988765
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=302.05 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=214.2
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCC---CcccccccCchHHHHHHHHH
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGE---PAYSYYGKIPEMNGLMRKAM 77 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~m 77 (254)
+|+||++++.|+.+.+|.++.+++.+. .+..+..|.+|.+++++|+ +++...+|. ++|+++.++|+....|.++|
T Consensus 83 ~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM 160 (353)
T 4a6d_A 83 FYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQAL 160 (353)
T ss_dssp EEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHH
T ss_pred eeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHH
Confidence 389999997665555788999988765 4568899999999999998 788888874 56888889999999999999
Q ss_pred hcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC------CCcEEEeCCCC
Q 025363 78 SGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI------PGVTHIGGDMF 151 (254)
Q Consensus 78 ~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~------~~i~~~~~d~~ 151 (254)
...+....+.+++.++ |++..+|||||||+|.++..+++++|+++ ++++|+|++++.+++. +||+|+.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~ 238 (353)
T 4a6d_A 161 QEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFF 238 (353)
T ss_dssp HTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred HHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccc
Confidence 9988888889999996 99999999999999999999999999999 9999999998876542 78999999999
Q ss_pred CC-CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 152 KS-IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 152 ~~-~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++ .|++|+|+++++||+|+|+++.++|++++++|+|||+|+|.|.+.++....+.. ...+|+.|+. ..+|++||
T Consensus 239 ~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~---~~~~dl~ml~--~~~g~ert 313 (353)
T 4a6d_A 239 KDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLL---TQLYSLNMLV--QTEGQERT 313 (353)
T ss_dssp TSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHH---HHHHHHHHHH--SSSCCCCC
T ss_pred cCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHH---HHHHHHHHHH--hCCCcCCC
Confidence 87 566799999999999999999999999999999999999999998876544332 2457888887 67899999
Q ss_pred HHHHHHHHHhCCCCeeeEEEccC
Q 025363 231 EQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
.+||+++|++|||+.+++.++.+
T Consensus 314 ~~e~~~ll~~AGf~~v~v~~~~~ 336 (353)
T 4a6d_A 314 PTHYHMLLSSAGFRDFQFKKTGA 336 (353)
T ss_dssp HHHHHHHHHHHTCEEEEEECCSS
T ss_pred HHHHHHHHHHCCCceEEEEEcCC
Confidence 99999999999999999988754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=272.91 Aligned_cols=243 Identities=24% Similarity=0.389 Sum_probs=211.4
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||+.|+.|+.+ ++.++++++.++.++..+++|.+|++++++|. ++++..+|.++|+++.++|+..+.|.++|...
T Consensus 91 ~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 168 (348)
T 3lst_A 91 RFALTDKGAALRSD-SPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETV 168 (348)
T ss_dssp EEEECTTTGGGSTT-SSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHhcC-CCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 48999999988765 56789999987777778899999999999998 88998999999999999999999999999998
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-----CCcEEEeCCCCCCCC
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-----PGVTHIGGDMFKSIP 155 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-----~~i~~~~~d~~~~~p 155 (254)
+....+.+++.++ +++..+|||||||+|.++..+++++|+++ ++++|+++++...+.. ++|+++.+|+++++|
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p 246 (348)
T 3lst_A 169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVP 246 (348)
T ss_dssp HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCC
T ss_pred hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCC
Confidence 8888889999995 99999999999999999999999999999 9999998877733211 579999999997778
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
..|+|++.+++|+|+++++.++|++++++|||||+|+|.|...++..... ....+++.|+. ..+++++|.++|.
T Consensus 247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~~~d~~~~~--~~~~~~~t~~e~~ 320 (348)
T 3lst_A 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH----QSKEMDFMMLA--ARTGQERTAAELE 320 (348)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC----HHHHHHHHHHH--TTSCCCCBHHHHH
T ss_pred CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhhhcChhhhh--cCCCcCCCHHHHH
Confidence 55999999999999999999999999999999999999999887653211 12356777776 5678999999999
Q ss_pred HHHHhCCCCeeeEEEccC
Q 025363 236 QLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~~~ 253 (254)
++++++||+++++.+..+
T Consensus 321 ~ll~~aGf~~~~~~~~~~ 338 (348)
T 3lst_A 321 PLFTAAGLRLDRVVGTSS 338 (348)
T ss_dssp HHHHHTTEEEEEEEECSS
T ss_pred HHHHHCCCceEEEEECCC
Confidence 999999999999887443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=270.37 Aligned_cols=249 Identities=30% Similarity=0.493 Sum_probs=213.4
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCC-CChhhhhcCCCcccccccCchHHH--HHHHHH
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPT-IEPFLKVHGEPAYSYYGKIPEMNG--LMRKAM 77 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~m 77 (254)
+|+||+.|+.|+.+ ++.++++++.+..++..++.|.+|++++++|+ .++|+.++|.++|+++.++|+..+ .|+..|
T Consensus 95 ~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m 173 (358)
T 1zg3_A 95 AYSLTPPSKLLISG-KPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAM 173 (358)
T ss_dssp EEEECHHHHTTCTT-STTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHH
T ss_pred EEeCCHHHHHHhCC-CCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHH
Confidence 38999999988876 46789999988777778899999999999983 278988899999999999999999 999999
Q ss_pred hcCCchhHHHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCC
Q 025363 78 SGVSVPFMTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPA 156 (254)
Q Consensus 78 ~~~~~~~~~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~ 156 (254)
...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~ 251 (358)
T 1zg3_A 174 ASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPS 251 (358)
T ss_dssp HHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCC
T ss_pred hcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCC
Confidence 88776655 7777772 266778999999999999999999999999 99999999999888777899999999987777
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCC---CCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
+|+|++.++||+|+++++.++|++++++|+| ||+|+|.|...++....+........+++.|+. ..+++++|.++
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~~e 329 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT--MFLGKERTKQE 329 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH--HHSCCCEEHHH
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc--cCCCCCCCHHH
Confidence 8999999999999999999999999999999 999999999887654322111233456777765 56789999999
Q ss_pred HHHHHHhCCCCeeeEEEccCC
Q 025363 234 FKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~~~ 254 (254)
|.++++++||+++++.++.|+
T Consensus 330 ~~~ll~~aGf~~~~~~~~~~~ 350 (358)
T 1zg3_A 330 WEKLIYDAGFSSYKITPISGF 350 (358)
T ss_dssp HHHHHHHTTCCEEEEEEETTT
T ss_pred HHHHHHHcCCCeeEEEecCCC
Confidence 999999999999999887653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=270.92 Aligned_cols=246 Identities=37% Similarity=0.686 Sum_probs=201.1
Q ss_pred CcccChhchhcccCCCC-CChHHHHHHhcChhHHhhhhhHHHHHhCC-CCChhhhhcCCCcccccccCchHHHHHHHHHh
Q 025363 1 MYSLTEIGKSLVTDVEG-LSYAPYVLQHHQDALMSMWPLVHKAILDP-TIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMS 78 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 78 (254)
+|+||+.++.|+.+ ++ .++++++.+..++..++.|.+|++++++| + ++++.++|.++|+++.++|+....|+..|.
T Consensus 113 ~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 190 (372)
T 1fp1_D 113 VYGLSMVGKYLVPD-ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 190 (372)
T ss_dssp EEEECTTGGGGSTT-CTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHH
T ss_pred eEecCHHHHHHhCC-CCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 38999999988876 34 68999998877777889999999999998 6 889888999999999999999999999998
Q ss_pred cCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCcc
Q 025363 79 GVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAAD 158 (254)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D 158 (254)
..+....+.+++.++.+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D 269 (372)
T 1fp1_D 191 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGD 269 (372)
T ss_dssp HHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEE
T ss_pred hhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCC
Confidence 887777788888885478889999999999999999999999999 9999999999998887889999999998777689
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
+|++.++||+|+++++.++|++++++|||||+|+|.|...++....+........+++.|+. ..+++++|.++|.+++
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll 347 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLS 347 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHH
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999887654322211123456776664 4568889999999999
Q ss_pred HhCCCCeeeEEEc
Q 025363 239 FFAGFPHLRLYRV 251 (254)
Q Consensus 239 ~~aGf~~~~~~~~ 251 (254)
+++||+++++.++
T Consensus 348 ~~aGf~~~~~~~~ 360 (372)
T 1fp1_D 348 KLSGFSKFQVACR 360 (372)
T ss_dssp HHTTCSEEEEEEE
T ss_pred HHCCCceEEEEEc
Confidence 9999999998873
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=269.27 Aligned_cols=238 Identities=22% Similarity=0.365 Sum_probs=211.6
Q ss_pred cccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCC
Q 025363 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVS 81 (254)
Q Consensus 2 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 81 (254)
|+||++++.|+.+ ++.++.+++.+..++..+..|.+|.+++++|. +++...+|.++|+++.++|+..+.|.++|....
T Consensus 110 y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~ 187 (369)
T 3gwz_A 110 FAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVS 187 (369)
T ss_dssp EECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999888665 56789999987766667899999999999998 889888999999999999999999999999888
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC-------CCCcEEEeCCCCCCC
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS-------IPGVTHIGGDMFKSI 154 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~-------~~~i~~~~~d~~~~~ 154 (254)
....+.+++.++ +++..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++ .++|+|+.+|+++++
T Consensus 188 ~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 265 (369)
T 3gwz_A 188 LTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETI 265 (369)
T ss_dssp HHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCC
T ss_pred hhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCC
Confidence 888888999995 88899999999999999999999999999 999999888887764 268999999999777
Q ss_pred CC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 155 PA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 155 p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
|. +|+|++.+++|+|+++++.++|++++++|||||+|+|.|...++... +. ...+++.|+. ..+++++|.++
T Consensus 266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~-~~----~~~~d~~~~~--~~~g~~~t~~e 338 (369)
T 3gwz_A 266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA-AS----TLFVDLLLLV--LVGGAERSESE 338 (369)
T ss_dssp CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC-HH----HHHHHHHHHH--HHSCCCBCHHH
T ss_pred CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-Cc----hhHhhHHHHh--hcCCccCCHHH
Confidence 74 59999999999999999999999999999999999999999876533 22 2456777776 56899999999
Q ss_pred HHHHHHhCCCCeeeEEE
Q 025363 234 FKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~ 250 (254)
|.++++++||+++++.+
T Consensus 339 ~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 339 FAALLEKSGLRVERSLP 355 (369)
T ss_dssp HHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEE
Confidence 99999999999999988
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=264.79 Aligned_cols=246 Identities=31% Similarity=0.483 Sum_probs=210.7
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHh-CCCCChhhhhcCCCcccccccCchHHHHHHHHHhc
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAIL-DPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG 79 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 79 (254)
+|+||+.|+.|+.+ ++.++++++.+..++..++.|.+|+++++ +|. ++++.++|.++|+++.++|+..+.|+..|..
T Consensus 93 ~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 170 (352)
T 1fp2_A 93 SYALTVASELLVRG-SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMAS 170 (352)
T ss_dssp EEEECHHHHTTSTT-SSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEeCCHHHHHHhCC-CCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHh
Confidence 48999999988876 45789999988777778899999999999 777 8899889999999999999999999999998
Q ss_pred CCchhHHHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCcc
Q 025363 80 VSVPFMTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAAD 158 (254)
Q Consensus 80 ~~~~~~~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D 158 (254)
......+. ++.++ .+++..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++.++|+++.+|+++++|..|
T Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D 248 (352)
T 1fp2_A 171 DSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNAD 248 (352)
T ss_dssp THHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCS
T ss_pred cchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCcc
Confidence 87766666 77671 267789999999999999999999999999 9999999999998877789999999998877789
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCC---CCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
+|++.+++|+|+++++.++|++++++||| ||+|+|.|...++....+........+++.|+. .++++++.++|.
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---~~g~~~t~~e~~ 325 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWK 325 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHH
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh---ccCCCCCHHHHH
Confidence 99999999999999999999999999999 999999999887653321111122345666664 247889999999
Q ss_pred HHHHhCCCCeeeEEEccC
Q 025363 236 QLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~~~ 253 (254)
++++++||+++++.++.|
T Consensus 326 ~ll~~aGf~~~~~~~~~~ 343 (352)
T 1fp2_A 326 KLFIEAGFQHYKISPLTG 343 (352)
T ss_dssp HHHHHTTCCEEEEEEEET
T ss_pred HHHHHCCCCeeEEEecCC
Confidence 999999999999888765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=267.40 Aligned_cols=240 Identities=22% Similarity=0.298 Sum_probs=207.6
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHH-hhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALM-SMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG 79 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 79 (254)
+|++|++|+.|+.+ ++.++.+++.+..+...+ +.|.+|++++++|. ++|+..+|.++|+++.++|+....|...|..
T Consensus 75 ~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 152 (332)
T 3i53_A 75 VYGLTEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSH 152 (332)
T ss_dssp BEEECTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEcCHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHH
Confidence 48999999988765 567899998776554566 89999999999998 8898889999999999999999999999998
Q ss_pred CCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCC
Q 025363 80 VSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFK 152 (254)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~ 152 (254)
.+....+.+++.++ +++..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++. ++|+|+.+|+++
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 230 (332)
T 3i53_A 153 HLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230 (332)
T ss_dssp HHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred hHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC
Confidence 77766777888885 88889999999999999999999999999 9999999888887642 689999999997
Q ss_pred CCCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCH
Q 025363 153 SIPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTE 231 (254)
Q Consensus 153 ~~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 231 (254)
++|. .|+|++++++|+|+++++.++|++++++|+|||+|+|.|...++. . + ...+++.|+. ..+++++|.
T Consensus 231 ~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~-~-----~~~~d~~~~~--~~~~~~~t~ 301 (332)
T 3i53_A 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-H-A-----GTGMDLRMLT--YFGGKERSL 301 (332)
T ss_dssp CCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHH--HHSCCCCCH
T ss_pred CCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-C-c-----cHHHHHHHHh--hCCCCCCCH
Confidence 7774 599999999999999999999999999999999999999987754 1 1 1356777775 567899999
Q ss_pred HHHHHHHHhCCCCeeeEEEccC
Q 025363 232 QEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
++|.++++++||+++++.++.+
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~ 323 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY 323 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS
T ss_pred HHHHHHHHHCCCEEEEEEECCC
Confidence 9999999999999999987643
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=255.75 Aligned_cols=239 Identities=24% Similarity=0.365 Sum_probs=206.3
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|++|+.++.|+ + +|.++.+++.+..++.. +.|.+|.+++++|+ ++++..+|.++|+++.++|+..+.|+..| ..
T Consensus 78 ~y~~t~~s~~l~-~-~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~ 152 (334)
T 2ip2_A 78 GYANTPTSHLLR-D-VEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KA 152 (334)
T ss_dssp EEEECHHHHTTS-S-STTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GG
T ss_pred eEecCHHHHHHh-C-CCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HH
Confidence 389999998888 4 46789999987766544 89999999999998 88988889999999999999999999999 88
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS 153 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~ 153 (254)
+....+.+++.++ +++ .+|||||||+|..+..+++++|+.+ ++++|+|.+++.+++. ++|+++.+|++++
T Consensus 153 ~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 229 (334)
T 2ip2_A 153 SNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229 (334)
T ss_dssp GHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC
T ss_pred HHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Confidence 8777888999985 887 9999999999999999999999999 9999998887776543 5899999999988
Q ss_pred CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHH
Q 025363 154 IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 154 ~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
+|. .|+|++.+++|+|+++++.++|++++++|+|||+|++.|...++... +. ....+++.|+. ..++++++.+
T Consensus 230 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~t~~ 303 (334)
T 2ip2_A 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP-SP---MSVLWDVHLFM--ACAGRHRTTE 303 (334)
T ss_dssp CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC-CH---HHHHHHHHHHH--HHSCCCCBHH
T ss_pred CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-cc---hhHHhhhHhHh--hCCCcCCCHH
Confidence 776 49999999999999999999999999999999999999998875432 21 22345666665 4568899999
Q ss_pred HHHHHHHhCCCCeeeEEEccC
Q 025363 233 EFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~~~~~~ 253 (254)
+|.++++++||+++++.++.+
T Consensus 304 e~~~ll~~aGf~~~~~~~~~~ 324 (334)
T 2ip2_A 304 EVVDLLGRGGFAVERIVDLPM 324 (334)
T ss_dssp HHHHHHHHTTEEEEEEEEETT
T ss_pred HHHHHHHHCCCceeEEEECCC
Confidence 999999999999999887654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=248.78 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=187.6
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcC--CCcccccccCchHHHH----HH
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHG--EPAYSYYGKIPEMNGL----MR 74 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~~~~~~~~~~----~~ 74 (254)
+|+||+.|++|+.++ ....++. +..+..+++|.+|++++++|+ +++...+| .++|+++.++|+..+. |+
T Consensus 86 ~y~~t~~s~~L~~~~---~~~~~~~-~~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~ 160 (363)
T 3dp7_A 86 RYVLAKAGWFLLNDK---MARVNME-FNHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFD 160 (363)
T ss_dssp EEEECHHHHHHHHCH---HHHHHHH-HHHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHH
T ss_pred EEecccchHHhhCCC---cccchhe-eecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHH
Confidence 499999999888763 2233333 334668899999999999998 77777787 6889999999987663 66
Q ss_pred HHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEe
Q 025363 75 KAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIG 147 (254)
Q Consensus 75 ~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~ 147 (254)
..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++. +||+|+.
T Consensus 161 ~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (363)
T 3dp7_A 161 HFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHG 235 (363)
T ss_dssp HHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred HHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence 66654332 23444442 35678999999999999999999999999 9999999888877643 5799999
Q ss_pred CCCCCC---CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChh-hhhhcccchHhhhhcc
Q 025363 148 GDMFKS---IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIY 222 (254)
Q Consensus 148 ~d~~~~---~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 222 (254)
+|++++ +|+ .|+|++.+++|+|+++++.++|++++++|||||+|+|.|...++...... ........++.++.
T Consensus 236 ~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-- 313 (363)
T 3dp7_A 236 ANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA-- 313 (363)
T ss_dssp CCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS--
T ss_pred ccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh--
Confidence 999985 564 49999999999999999999999999999999999999998876532111 00111223343443
Q ss_pred ccCceecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 223 RAKGNHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 223 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
..+++++|.++|.++|+++||+++++.+..|
T Consensus 314 ~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g 344 (363)
T 3dp7_A 314 NGNSKMFHSDDLIRCIENAGLEVEEIQDNIG 344 (363)
T ss_dssp CSSCCSCCHHHHHHHHHTTTEEESCCCCCBT
T ss_pred CCCCcccCHHHHHHHHHHcCCeEEEEEeCCC
Confidence 4567889999999999999999999887655
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=248.27 Aligned_cols=243 Identities=21% Similarity=0.280 Sum_probs=204.1
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHH-hhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALM-SMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG 79 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 79 (254)
+|++|+.++.|+.+ ++.++++++.+..++..+ ..|.+|.+++++|. +++...+|.++|+++.++|+....|...|..
T Consensus 88 ~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~ 165 (374)
T 1qzz_A 88 PLRPTRLGMLLADG-HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSC 165 (374)
T ss_dssp CCEECTTGGGGSTT-CTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGG
T ss_pred EEEEChHHHhhcCC-CcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHH
Confidence 49999999988876 467888988766544567 89999999999998 7788888999999999999999999999998
Q ss_pred CCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCC
Q 025363 80 VSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFK 152 (254)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~ 152 (254)
......+.+++.++ +.+..+|||||||+|.++..+++++|+.+ ++++|++.+++.+++. ++|+++.+|+++
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 166 DEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp GSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred hhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 88878888999985 88889999999999999999999999999 9999998888877642 489999999998
Q ss_pred CCCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc--ccCCCCCChhhhhhcccchHhhhhccccCceec
Q 025363 153 SIPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGNHR 229 (254)
Q Consensus 153 ~~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (254)
++|. .|+|++.+++|+|+++++.++|++++++|||||+|++.|. ..++... +. ....+++.++. ..+++.+
T Consensus 244 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~ 317 (374)
T 1qzz_A 244 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD-RF---FSTLLDLRMLT--FMGGRVR 317 (374)
T ss_dssp CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------HH---HHHHHHHHHHH--HHSCCCC
T ss_pred cCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC-cc---hhhhcchHHHH--hCCCcCC
Confidence 7776 4999999999999999989999999999999999999998 7654321 11 12345666654 4568889
Q ss_pred CHHHHHHHHHhCCCCeeeEEEccC
Q 025363 230 TEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 230 t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
+.++|.++++++||+++++..+.+
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGS 341 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCceEEEEECCC
Confidence 999999999999999999887654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=246.15 Aligned_cols=243 Identities=22% Similarity=0.361 Sum_probs=205.9
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChh-HHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDA-LMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG 79 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 79 (254)
+|++|+.++.|+.+ ++.++++++.+..++. .+..|.+|.+.+++|. ++++..+|.++|+++..+|+....|...|..
T Consensus 89 ~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~ 166 (360)
T 1tw3_A 89 EFVPTEVGELLADD-HPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLAC 166 (360)
T ss_dssp EEEECTTGGGGSTT-STTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTT
T ss_pred eEEeCHHHHHHhcC-CchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHH
Confidence 38999999988876 4678888887655443 6789999999999997 7788888999999998999999999999998
Q ss_pred CCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCC
Q 025363 80 VSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFK 152 (254)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~ 152 (254)
......+.+++.++ +.+..+|||||||+|.++..+++++|+++ ++++|++.+++.+++. ++|+++.+|+++
T Consensus 167 ~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 167 DQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp TTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 88888888999995 88889999999999999999999999999 9999988787766542 489999999998
Q ss_pred CCCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc-cCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 153 SIPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV-LPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 153 ~~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++|. .|+|++.+++|+|+++++.++|++++++|||||+|++.|.. .++..... ....+++.|+. ..+++.++
T Consensus 245 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~t 318 (360)
T 1tw3_A 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE----QFTELDLRMLV--FLGGALRT 318 (360)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH----HHHHHHHHHHH--HHSCCCCB
T ss_pred CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcc----hhhhccHHHhh--hcCCcCCC
Confidence 7776 49999999999999999999999999999999999999988 65432211 11245666654 45688899
Q ss_pred HHHHHHHHHhCCCCeeeEEEccC
Q 025363 231 EQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
.++|.++++++||+++++.++.+
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~~~ 341 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQLPS 341 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCC
Confidence 99999999999999999887654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=235.54 Aligned_cols=233 Identities=17% Similarity=0.239 Sum_probs=188.2
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||+.++.++.++++.++++++.+. ...++.|.+|++++++|.+..|+.. .++..+|+....|..+|...
T Consensus 92 ~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~ 163 (352)
T 3mcz_A 92 AFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRL 163 (352)
T ss_dssp EEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHH
T ss_pred eeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhh
Confidence 489999997655555678888887654 3478899999999999974433322 23467888899999999873
Q ss_pred CchhHHHHHhhcCCCCC-CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCC
Q 025363 81 SVPFMTSVLEGYNGFKG-VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFK 152 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~ 152 (254)
... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++. +||+++.+|+++
T Consensus 164 ~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 240 (352)
T 3mcz_A 164 SQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLD 240 (352)
T ss_dssp HHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTC
T ss_pred hhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCccc
Confidence 222 347888886 777 89999999999999999999999999 9999998887766542 579999999998
Q ss_pred C---CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCcee
Q 025363 153 S---IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH 228 (254)
Q Consensus 153 ~---~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (254)
. .+. .|+|++.+++|+|+++++.++|++++++|||||+|++.|...++....+.. ...+++.|+. ...++++
T Consensus 241 ~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~ 316 (352)
T 3mcz_A 241 ARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPAL---SADFSLHMMV-NTNHGEL 316 (352)
T ss_dssp GGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHH---HHHHHHHHHH-HSTTCCC
T ss_pred CcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCch---HHHhhHHHHh-hCCCCCc
Confidence 7 344 499999999999999999999999999999999999999988765433222 2356776665 3457889
Q ss_pred cCHHHHHHHHHhCCCCeeeE
Q 025363 229 RTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 229 ~t~~e~~~ll~~aGf~~~~~ 248 (254)
+|.++|.++++++||++++.
T Consensus 317 ~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 317 HPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp CCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHCCCceeee
Confidence 99999999999999998874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=232.56 Aligned_cols=239 Identities=16% Similarity=0.114 Sum_probs=199.9
Q ss_pred CcccChhc-hhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc
Q 025363 1 MYSLTEIG-KSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG 79 (254)
Q Consensus 1 ~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 79 (254)
+|++|+.+ ++|..+ ++.++.+++.+..++..++.|.+|.+++++|. ++++ + |+++.++++....|...|..
T Consensus 75 ~y~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 75 GYRLTSDSAMFLDRQ-SKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp EEEECHHHHHHTCTT-STTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred EEecCHHHHHHhccC-CcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 48999999 677665 56788898887765568899999999999987 5443 3 78888899999999999998
Q ss_pred CCchhHHHHHhhcCCC--CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCC
Q 025363 80 VSVPFMTSVLEGYNGF--KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDM 150 (254)
Q Consensus 80 ~~~~~~~~i~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~ 150 (254)
........+++.++ + .+..+|||||||+|.++..+++++|+.+ ++++|++.+++.+++. ++|+++.+|+
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 88877888898885 7 8889999999999999999999999999 9999998887776653 4799999999
Q ss_pred CCC-CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCcee
Q 025363 151 FKS-IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH 228 (254)
Q Consensus 151 ~~~-~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (254)
++. ++. .|+|++.+++|+|+++++.++|++++++|+|||++++.|...++....+. ....+++.|+. ...+++.
T Consensus 225 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~ 300 (335)
T 2r3s_A 225 FEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLA-TTPNGDA 300 (335)
T ss_dssp TTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHH-HSSSCCC
T ss_pred ccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHe-eCCCCCc
Confidence 985 665 49999999999999999999999999999999999999998775433222 12345666665 3347889
Q ss_pred cCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 229 RTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 229 ~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
++.++|.++++++||+.+++.++.+
T Consensus 301 ~t~~~~~~ll~~aGf~~~~~~~~~~ 325 (335)
T 2r3s_A 301 YTFAEYESMFSNAGFSHSQLHSLPT 325 (335)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTT
T ss_pred CCHHHHHHHHHHCCCCeeeEEECCC
Confidence 9999999999999999999988764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=232.06 Aligned_cols=229 Identities=17% Similarity=0.267 Sum_probs=189.1
Q ss_pred CcccChhc-hhcccCCCC---CChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCch---HHHHH
Q 025363 1 MYSLTEIG-KSLVTDVEG---LSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPE---MNGLM 73 (254)
Q Consensus 1 ~y~~t~~~-~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~---~~~~~ 73 (254)
+|++|+.+ ++|+.+ ++ .++++++.+. .+..++.|.+|++++++|. + |+++.++|+ ..+.|
T Consensus 100 ~y~~t~~~~~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f 166 (359)
T 1x19_A 100 KWSLTEFADYMFSPT-PKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLY 166 (359)
T ss_dssp EEEECHHHHHHSSSS-CSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHH
T ss_pred eEecCHHHHHHhcCC-CCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHH
Confidence 48999976 566554 55 6788888765 4568899999999999886 2 667778888 99999
Q ss_pred HHHHhcCCc-hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEE
Q 025363 74 RKAMSGVSV-PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTH 145 (254)
Q Consensus 74 ~~~m~~~~~-~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~ 145 (254)
...|..... ...+.+++.++ +.+..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++. ++|++
T Consensus 167 ~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 244 (359)
T 1x19_A 167 FEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRG 244 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999888 88889999995 88899999999999999999999999999 9999998888877642 57999
Q ss_pred EeCCCCCC-CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhcccc
Q 025363 146 IGGDMFKS-IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA 224 (254)
Q Consensus 146 ~~~d~~~~-~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (254)
+.+|+++. ++++|+|++.+++|+|+++++.++|++++++|||||+|++.|...++. ..+... ..+ .++. ...
T Consensus 245 ~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~---~~~--~~~~-~~~ 317 (359)
T 1x19_A 245 IAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNFD---YLS--HYIL-GAG 317 (359)
T ss_dssp EECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCHH---HHH--HHGG-GGG
T ss_pred EeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchHH---HHH--HHHH-hcC
Confidence 99999986 555699999999999999999999999999999999999999887654 212111 111 2322 123
Q ss_pred Ccee----cCHHHHHHHHHhCCCCeeeEEEc
Q 025363 225 KGNH----RTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 225 ~~~~----~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
++++ ++.++|.++++++||+++++.++
T Consensus 318 ~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 318 MPFSVLGFKEQARYKEILESLGYKDVTMVRK 348 (359)
T ss_dssp SSCCCCCCCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred CCCcccCCCCHHHHHHHHHHCCCceEEEEec
Confidence 4666 89999999999999999988775
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=159.13 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=116.1
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
.+++.+ .+++.+|||||||+|..+..+++++ ++++ ++++|+ +.|++.++++ .+|+++.+|+.+. ++
T Consensus 62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~ 138 (261)
T 4gek_A 62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE 138 (261)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC
T ss_pred HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc
Confidence 344444 5678999999999999999999986 5678 999999 9999887642 5899999999875 45
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhcccc-----------
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA----------- 224 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 224 (254)
..|+|++..+||++++++...+|++++++|||||+|++.|............ ......++....-...
T Consensus 139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~ 217 (261)
T 4gek_A 139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLE 217 (261)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHH
T ss_pred ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence 5699999999999999888899999999999999999999877654210000 0000001000000000
Q ss_pred -CceecCHHHHHHHHHhCCCCeeeE
Q 025363 225 -KGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 225 -~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
.-...|.+++.++|+++||+.+++
T Consensus 218 ~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 218 NVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred ccccCCCHHHHHHHHHHcCCCeEEE
Confidence 012258899999999999998875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=148.94 Aligned_cols=164 Identities=13% Similarity=0.033 Sum_probs=119.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~- 157 (254)
.+.+++.++...++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. .+++++.+|+.+. .++.
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~f 110 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY 110 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCE
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCc
Confidence 345555554345678999999999999999999999888 999999 8888776543 4899999999886 4443
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhccc--------chH---hhhhccccCc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLE--------GDI---FVMTIYRAKG 226 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~ 226 (254)
|+|++..++|++++.+...+|++++++|||||++++.+...+......... ...+ +.. ..........
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLN-KTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHH-HHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHH-HHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 999999999999988888899999999999999999998765432100000 0000 000 0000001122
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEE
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
..++.+++.++|+++||+.+++..
T Consensus 190 ~~~~~~~~~~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 190 KDIEMNQQLNWLKEAGFRDVSCIY 213 (234)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEEE
T ss_pred cccCHHHHHHHHHHcCCCceeeee
Confidence 346889999999999999988754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=140.02 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=113.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCCCCC-c-cE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKSIPA-A-DA 159 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~~p~-~-D~ 159 (254)
...+++.+....+..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+..+. . |+
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~ 110 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA 110 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence 4445555544566789999999999999999998 557 999999 8888887653 6799999999887443 3 99
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc-------eecCHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-------NHRTEQ 232 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~t~~ 232 (254)
|++..++|++++++...+|++++++|||||++++.+...+.......... ........ ....+ ...+.+
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 186 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR--TLQDGRSFRIVKVFRSPA 186 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE--ECTTSCEEEEECCCCCHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee--ecCCcchhhHhhcCCCHH
Confidence 99999999999888899999999999999999999876643211000000 00000000 01111 134899
Q ss_pred HHHHHHHhCCCCeeeEE
Q 025363 233 EFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~~ 249 (254)
++.++++++||++....
T Consensus 187 ~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 187 ELTERLTALGWSCSVDE 203 (218)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHCCCEEEeee
Confidence 99999999999955433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=143.83 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=121.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-c
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-A 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-~ 157 (254)
.+.+++.++ ..++.+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. .
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence 455667774 7788999999999999999999987 667 999999 8888777654 6899999999875 444 3
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|++..++|++++++...+|++++++|||||++++.+...+.... .... .... .. ..+...++.+++.+
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~---~~~~-~~---~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN--WDDE---FKEY-VK---QRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG--CCHH---HHHH-HH---HHTCCCCCHHHHHH
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc--chHH---HHHH-Hh---cCCCCCCCHHHHHH
Confidence 9999999999998888999999999999999999999987654211 0000 0000 00 11234568999999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
+++++||+++++..+
T Consensus 192 ~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 192 ILTACNFKNVVSKDL 206 (266)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHcCCeEEEEEeC
Confidence 999999999988765
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=141.12 Aligned_cols=151 Identities=14% Similarity=0.254 Sum_probs=114.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC---CCCC--c
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK---SIPA--A 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~---~~p~--~ 157 (254)
..+.+...++..+++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++.+|+.+ +++. .
T Consensus 28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~f 102 (240)
T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYL 102 (240)
T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCB
T ss_pred HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCe
Confidence 44445555544567789999999999999999988 557 999999 8898888764 9999999876 3443 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+|++..++|++++++...+|++++++|||||++++........ .. ..... . .......++.+++.++
T Consensus 103 D~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~-----~~~~~-~--~~~~~~~~~~~~l~~~ 170 (240)
T 3dli_A 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL----YS-----LINFY-I--DPTHKKPVHPETLKFI 170 (240)
T ss_dssp SEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH----HH-----HHHHT-T--STTCCSCCCHHHHHHH
T ss_pred eEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh----HH-----HHHHh-c--CccccccCCHHHHHHH
Confidence 99999999999998888999999999999999999977642211 10 00110 0 0122345689999999
Q ss_pred HHhCCCCeeeEEEc
Q 025363 238 GFFAGFPHLRLYRV 251 (254)
Q Consensus 238 l~~aGf~~~~~~~~ 251 (254)
++++||+++++...
T Consensus 171 l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 171 LEYLGFRDVKIEFF 184 (240)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHCCCeEEEEEEe
Confidence 99999999887654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-19 Score=141.96 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=113.2
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-CCC-ccEE
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA-ADAI 160 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~p~-~D~v 160 (254)
..+++.+. ..++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .++ .|+|
T Consensus 35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 34555553 456889999999999999999988 557 999999 8888877654 3899999999886 444 3999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++..++|++++.+...+|++++++|||||++++.+..................................+.++|.+++++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFEN 190 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHH
Confidence 99999999998887789999999999999999998765432110000000000000000000000123488999999999
Q ss_pred CCCCeeeEEE
Q 025363 241 AGFPHLRLYR 250 (254)
Q Consensus 241 aGf~~~~~~~ 250 (254)
+||+++....
T Consensus 191 aGf~v~~~~~ 200 (220)
T 3hnr_A 191 NGFHVTFTRL 200 (220)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEeec
Confidence 9998776543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-19 Score=143.83 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=117.8
Q ss_pred HHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEE
Q 025363 73 MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTH 145 (254)
Q Consensus 73 ~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~ 145 (254)
|............+.+++.++ ..++.+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. +++++
T Consensus 14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~ 89 (260)
T 1vl5_A 14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEY 89 (260)
T ss_dssp ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence 444444444455667777774 67889999999999999999999875 6 999999 8888877643 57999
Q ss_pred EeCCCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH-hhhhc
Q 025363 146 IGGDMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI-FVMTI 221 (254)
Q Consensus 146 ~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 221 (254)
+.+|+.+. +++ . |+|++..++|++++. ..+|++++++|||||+|++.+...+.. +.... .+.. ....
T Consensus 90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~~~---~~~~~~~~~- 160 (260)
T 1vl5_A 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN---DAFDV---FYNYVEKER- 160 (260)
T ss_dssp EECCC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS---HHHHH---HHHHHHHHH-
T ss_pred EEecHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC---HHHHH---HHHHHHHhc-
Confidence 99999875 554 3 999999999999754 689999999999999999998776543 11111 1111 1111
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.......++.++|.++|+++||+++.+...
T Consensus 161 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 161 DYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 011234578999999999999998876643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=142.08 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=117.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-c
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-A 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-~ 157 (254)
...+++.++ ..+..+|||||||+|.++..+++.. ..+ ++++|. +.+++.+++. .+++++.+|+.+. ++. .
T Consensus 82 ~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCC
Confidence 345666663 6678899999999999999999886 446 899998 8888776643 5799999999775 443 3
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|++.+++|++++++...+|++++++|||||+|++.+....... ...+. ......++.++|.+
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK------EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET------TTTEEEBCHHHHHH
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc------cCCcccCCHHHHHH
Confidence 999999999999988899999999999999999999987543221 01110 11234579999999
Q ss_pred HHHhCCCCeeeEEEccC
Q 025363 237 LGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~~ 253 (254)
+++++||+++++....+
T Consensus 224 ~l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQEE 240 (254)
T ss_dssp HHHHHTCCEEEEEECTT
T ss_pred HHHHCCCEEEEeeecCC
Confidence 99999999998876543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=144.56 Aligned_cols=162 Identities=10% Similarity=0.019 Sum_probs=121.2
Q ss_pred HhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeC
Q 025363 77 MSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGG 148 (254)
Q Consensus 77 m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~ 148 (254)
+........+.+++.++...++.+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 3333334456677777437788999999999999999999986 567 999999 8888877653 47999999
Q ss_pred CCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC
Q 025363 149 DMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 149 d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
|+.+. ++. . |+|++..++|+++ ...+|++++++|||||++++.+............ ........ ..
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----~~~~~~~~---~~ 243 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSK-----WVSQINAH---FE 243 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCH-----HHHHHHHH---HT
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhH-----HHHHHHhh---hc
Confidence 99875 443 3 9999999999984 6799999999999999999998776653211100 01111000 01
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
...++.++|.++++++||+++++..+
T Consensus 244 ~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 244 CNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 13568999999999999999988765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=141.83 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=119.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
..+.+++.++ ..++.+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. +
T Consensus 49 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 49 LTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 3456777774 7788999999999999999999987 567 999999 8887776542 4799999999875 5
Q ss_pred CC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHH
Q 025363 155 PA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 155 p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
+. . |+|++..++|++++. ..+|++++++|||||++++.+............ ...+..... ......++.+
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~ 197 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAKK----EAVDAFRAG--GGVLSLGGID 197 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHH----HHHHHHHHH--HTCCCCCCHH
T ss_pred CCCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHH----HHHHHHHhh--cCccCCCCHH
Confidence 44 3 999999999999654 689999999999999999999876543211110 011111111 2234567999
Q ss_pred HHHHHHHhCCCCeeeEEEc
Q 025363 233 EFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~~~~ 251 (254)
++.++++++||+++++..+
T Consensus 198 ~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 198 EYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHcCCeEEEEEEC
Confidence 9999999999999988765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=139.61 Aligned_cols=153 Identities=16% Similarity=0.088 Sum_probs=115.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
..+.+++.++ ..++.+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+..+
T Consensus 24 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 24 KYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 3455666663 7788999999999999999999987 567 999999 8888877543 479999999987633
Q ss_pred -Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 -AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 -~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
+. |+|++..++|++++ ..++|++++++|||||+|++.+.............. .. .. ......++.++
T Consensus 101 ~~~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~--~~-----~~--~~~~~~~~~~~ 169 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ--AC-----GV--SSTSDFLTLPG 169 (256)
T ss_dssp SSCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH--TT-----TC--SCGGGSCCHHH
T ss_pred CCCCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH--HH-----hc--ccccccCCHHH
Confidence 33 99999999999864 478999999999999999999987654422111100 00 00 11123468999
Q ss_pred HHHHHHhCCCCeeeEEE
Q 025363 234 FKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~ 250 (254)
|.++++++||+++++..
T Consensus 170 ~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 170 LVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp HHHHHHTTTBCCCEEEE
T ss_pred HHHHHHHCCCeeEEEEe
Confidence 99999999999887654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=141.94 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=119.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+++.++ ..++.+|||||||+|.++..+++.++ .+ ++++|+ +.+++.+++. ++++++.+|+.+ +|+
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 128 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE 128 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC
Confidence 455667664 77889999999999999999997774 47 999999 8888776542 589999999854 444
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-----ChhhhhhcccchHhhhhccccCceecC
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
.|+|++..++|++++++...+|++++++|||||++++.+...+.... .+.........+..... ..+++...+
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 207 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPS 207 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe-eCCCCCCCC
Confidence 39999999999998777789999999999999999999887653210 00000000011111111 123456679
Q ss_pred HHHHHHHHHhCCCCeeeEEEc
Q 025363 231 EQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.+++.++++++||+++++..+
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999998765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=141.54 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=122.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+++.++ ..++.+|||||||+|.++..+++.++ .+ ++++|+ +.+++.+++. .+++++.+|+.+. ++
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 136 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DE 136 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CC
Confidence 455677774 78889999999999999999999986 67 999999 8888877653 3799999999765 44
Q ss_pred -ccEEEeccccccCCH-------HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc-------ccchHhhhhc
Q 025363 157 -ADAIFMKWVLTTWTD-------DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL-------LEGDIFVMTI 221 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~-------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 221 (254)
.|+|++..++|++++ +....++++++++|||||++++.+...+.... ...... ...+.....
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 213 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEE--AQELGLTSPMSLLRFIKFILTE- 213 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHH--HHHHTCCCCHHHHHHHHHHHHH-
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccc--hhhccccccccccchHHHHHHh-
Confidence 399999999999943 66789999999999999999999887654310 000000 000111111
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
..+++...+.+++.++++++||+++++..+.
T Consensus 214 ~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 214 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 1345667899999999999999999887653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=140.43 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=112.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC--ccEEEeccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA--ADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~--~D~v~~~~v 165 (254)
.+..+|||||||+|.++..+++.. ..+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|++..+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence 357899999999999999999886 446 999999 8888877643 2588999998765 443 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCe
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPH 245 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 245 (254)
+|++++++...+|++++++|||||+|++.+...... ..++. ......++.++|.++++++||++
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~~~~~------~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----------VILDD------VDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----------EEEET------TTTEEEEBHHHHHHHHHHTTCCE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----------ceecc------cCCcccCCHHHHHHHHHHcCCeE
Confidence 999998888899999999999999999998876531 01110 11234468999999999999999
Q ss_pred eeEEEccCC
Q 025363 246 LRLYRVLDY 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
+++....++
T Consensus 220 ~~~~~~~~~ 228 (241)
T 2ex4_A 220 LAEERQENL 228 (241)
T ss_dssp EEEEECCSC
T ss_pred EEeeecCCC
Confidence 998876553
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=144.19 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=116.3
Q ss_pred HHHHHhhc---CCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC
Q 025363 85 MTSVLEGY---NGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS 153 (254)
Q Consensus 85 ~~~i~~~~---~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~ 153 (254)
.+.+++.+ ....++.+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+.
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 34455555 126778899999999999999999987 457 999999 8888776542 5799999999875
Q ss_pred -CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 154 -IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 154 -~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++. . |+|++..++|++++ ...+|++++++|||||+|++.+........... ...+.... ......+
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~ 213 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSS------IQPILDRI---KLHDMGS 213 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG------GHHHHHHH---TCSSCCC
T ss_pred CCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHH------HHHHHHHh---cCCCCCC
Confidence 444 3 99999999999976 579999999999999999999987654322110 00111110 1123458
Q ss_pred HHHHHHHHHhCCCCeeeEEEc
Q 025363 231 EQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.+++.++++++||+++++..+
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEEC
Confidence 999999999999999988765
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=136.81 Aligned_cols=146 Identities=19% Similarity=0.121 Sum_probs=117.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p 155 (254)
...+++.++ ..++.+|||||||+|.++..+++.. |..+ ++++|. +.+++.+++. ++++++.+|+.+. ++
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 355666664 7788899999999999999999997 6778 999999 8888877653 5799999999875 44
Q ss_pred Cc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 AA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
.. |+|++..++|++++ ...+|++++++|+|||++++.+.........+ .....++.++
T Consensus 104 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~~ 163 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEWE 163 (219)
T ss_dssp SSCEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHHH
T ss_pred CCCeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHHH
Confidence 43 99999999999964 47899999999999999999987655431110 0112368899
Q ss_pred HHHHHHhCCCCeeeEEEcc
Q 025363 234 FKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~ 252 (254)
+.++++++||+++++..+.
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~ 182 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVG 182 (219)
T ss_dssp HHHHHHHTTCEEEEEEEET
T ss_pred HHHHHHHCCCEEEEEEeeC
Confidence 9999999999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=137.12 Aligned_cols=137 Identities=17% Similarity=0.023 Sum_probs=110.8
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~ 172 (254)
+.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. .+. . |+|++..++|+++.+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 679999999999999999988 457 999999 8888887764 7899999999875 443 3 999999999999877
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
+...+|++++++|||||++++.+...+... .+.- .......++.++|.++++++||+++++....
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH-----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC-----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc-----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 889999999999999999999876543310 0000 0112345799999999999999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-19 Score=144.18 Aligned_cols=152 Identities=17% Similarity=0.215 Sum_probs=113.3
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC-c-cEEEec
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-A-DAIFMK 163 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~-~-D~v~~~ 163 (254)
...++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. . |+|++.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence 467889999999999999999999999888 999999 8888877543 5799999999875 443 3 999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC---CCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD---SNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
.++|++++. ..+|++++++|||||++++.+...... +..+..... ...+.... ...++..++..++.++|++
T Consensus 113 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 113 FVLEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEA--WNCLIRVQ-AYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp SCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHH--HHHHHHHH-HHTTCCTTGGGGHHHHHHH
T ss_pred chhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHH--HHHHHHHH-HhcCCCcchHHHHHHHHHH
Confidence 999999765 489999999999999999988644221 111111110 00010010 1223445677899999999
Q ss_pred CCCCeeeEEEc
Q 025363 241 AGFPHLRLYRV 251 (254)
Q Consensus 241 aGf~~~~~~~~ 251 (254)
+||+++++...
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999988754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=140.34 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=120.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
..+.+++.++ ..++.+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. |
T Consensus 78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 153 (318)
T 2fk8_A 78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A 153 (318)
T ss_dssp HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C
Confidence 3456677774 7788999999999999999999987 557 999999 8888776643 4699999998543 4
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC----hhhh-hhcccchHhhhhccccCceec
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE----SQRT-RALLEGDIFVMTIYRAKGNHR 229 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 229 (254)
+ .|+|++..++|++++++...+|++++++|||||++++.+...+..... .+.. ......+..... ..+++..+
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 232 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLP 232 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHh-cCCCCcCC
Confidence 4 499999999999987788899999999999999999998876542100 0000 000001111111 12345667
Q ss_pred CHHHHHHHHHhCCCCeeeEEEc
Q 025363 230 TEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 230 t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+.+++.++++++||+++++..+
T Consensus 233 s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCEEC
T ss_pred CHHHHHHHHHhCCCEEEEEEec
Confidence 9999999999999999887764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-19 Score=138.88 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=112.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
.+.+++.++ .++. +|||||||+|.++..++++ ++.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 455666663 5555 9999999999999999998 7778 999999 8888777653 4799999999885 55
Q ss_pred C-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc-ccchHhhhhccccCceecCHH
Q 025363 156 A-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL-LEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 156 ~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~ 232 (254)
. . |+|++..++|++++ ...+|++++++|||||++++.+...+............ ......... ......++.+
T Consensus 109 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 184 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFN--RKNISQENVE 184 (219)
T ss_dssp TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHH--HHHSSHHHHH
T ss_pred cccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhh--hhccccCCHH
Confidence 4 3 99999999999954 46899999999999999999875443210000000000 000000000 0112335789
Q ss_pred HHHHHHHhCCCCeeeEEEc
Q 025363 233 EFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~~~~ 251 (254)
+|.++|+++||+.+++...
T Consensus 185 ~~~~~l~~aGf~~v~~~~~ 203 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILG 203 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEec
Confidence 9999999999999887754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=137.36 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=114.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
...+++.+....++.+|||||||+|.++..+++.++. + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 3445555534667889999999999999999999875 7 999999 8888776543 4699999999664 44
Q ss_pred C-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 A-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
. . |+|++..++|+++ ..++|++++++|||||++++.+............ ....... .....+.++
T Consensus 112 ~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~ 178 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEI------EDFWMDA----YPEISVIPT 178 (257)
T ss_dssp TTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHH------HHHHHHH----CTTCCBHHH
T ss_pred CCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHH------HHHHHHh----CCCCCCHHH
Confidence 3 3 9999999999983 4689999999999999999999765433221111 1111111 122468999
Q ss_pred HHHHHHhCCCCeeeEEEcc
Q 025363 234 FKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~ 252 (254)
+.++++++||++++...++
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCeEEEEEECC
Confidence 9999999999999887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-19 Score=140.87 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~- 156 (254)
.+.+.+.+ .+..+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. .+++++.+|+.+. ++.
T Consensus 29 ~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (227)
T 1ve3_A 29 EPLLMKYM---KKRGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 102 (227)
T ss_dssp HHHHHHSC---CSCCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred HHHHHHhc---CCCCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCC
Confidence 34444433 3478999999999999999999876 6 999999 8888877653 6799999999875 443
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.|+|++..++|.+...+..+++++++++|+|||++++.+..
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 39999999977777788899999999999999999998765
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=136.62 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=115.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p 155 (254)
....+++.++ ..++.+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC
Confidence 3445666664 78889999999999999999998865 5 999999 8888776643 5799999999765 44
Q ss_pred C-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 A-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
. . |+|++..++|++++ ...+|++++++|||||++++.+...+.. +........ +.... .......++.++
T Consensus 85 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 156 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPED---PVLDEFVNH--LNRLR-DPSHVRESSLSE 156 (239)
T ss_dssp TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSS---HHHHHHHHH--HHHHH-CTTCCCCCBHHH
T ss_pred CCcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCC---hhHHHHHHH--HHHhc-cccccCCCCHHH
Confidence 3 3 99999999999965 4689999999999999999998876543 111110000 11111 011234578999
Q ss_pred HHHHHHhCCCCeeeEEEc
Q 025363 234 FKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~ 251 (254)
|.++|+++||+++++...
T Consensus 157 ~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 157 WQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCcEEEEEee
Confidence 999999999998876653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=134.64 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC-Cc-cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP-AA-DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p-~~-D~v~~~~vlh~~~~ 171 (254)
..++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++..++.+..+|+.+..+ +. |+|++..++|++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999988 457 999999 8888887765578888899876533 33 99999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC-CCeeeEEE
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG-FPHLRLYR 250 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 250 (254)
++...+|++++++|||||++++.......... +. . ...-..++.++|.++++++| |+++++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----------~~--~---~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGR-----------DK--L---ARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE-----------CT--T---SCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc-----------cc--c---chhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 88899999999999999999997543322100 00 0 00112368999999999999 99998876
Q ss_pred cc
Q 025363 251 VL 252 (254)
Q Consensus 251 ~~ 252 (254)
..
T Consensus 182 ~~ 183 (211)
T 3e23_A 182 SE 183 (211)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=138.36 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=115.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
...+++.++...++.+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR 111 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence 3344555533667899999999999999999998 7778 999999 8888776643 5699999999775 44
Q ss_pred C-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 A-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
. . |+|++..++|+++ ...+|++++++|||||++++.+............ ....... .....+.++
T Consensus 112 ~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~ 178 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEI------NDFWMDA----YPEIDTIPN 178 (267)
T ss_dssp TTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHH------HHHHHHH----CTTCEEHHH
T ss_pred CCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHH------HHHHHHh----CCCCCCHHH
Confidence 3 3 9999999999983 3689999999999999999999875433221110 1111000 123358899
Q ss_pred HHHHHHhCCCCeeeEEEcc
Q 025363 234 FKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~ 252 (254)
+.++++++||+++++..++
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 179 QVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCEEEEEEECC
Confidence 9999999999999988764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-18 Score=139.08 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=85.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc-cEEEecc-ccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA-DAIFMKW-VLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~-D~v~~~~-vlh~~~ 170 (254)
.+..+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. ++++++.+|+.+. .++. |+|++.. ++|+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4568999999999999999998853 6 999999 8888887654 6899999999886 4443 9999998 999986
Q ss_pred H-HHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 171 D-DECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 171 ~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+ ++...+|++++++|||||+|++.+...++
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 4 57789999999999999999997654443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=137.45 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=108.4
Q ss_pred CCCCeEEEecCcc---cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC------------CC
Q 025363 96 KGVKRLVDVGGSA---GDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS------------IP 155 (254)
Q Consensus 96 ~~~~~vlDvG~G~---G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~------------~p 155 (254)
.+..+|||||||+ |.++..+.+.+|+.+ ++++|+ |.|++.+++. ++++++.+|+.+. ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3457999999999 999888888889989 999999 9998877643 6899999999763 22
Q ss_pred --CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 --AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 --~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
..|+|++..+||++++++...+|++++++|+|||+|++.+..... . .... ...+..... ......++.+|
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~~---~~~~~~~~~--~~~~~~~s~~e 226 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQQ---KLARITREN--LGEGWARTPEE 226 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHHH---HHHHHHHHH--HSCCCCBCHHH
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHHH---HHHHHHHhc--CCCCccCCHHH
Confidence 249999999999999878899999999999999999999976532 1 1111 111221111 12345689999
Q ss_pred HHHHHHhCCCCeee
Q 025363 234 FKQLGFFAGFPHLR 247 (254)
Q Consensus 234 ~~~ll~~aGf~~~~ 247 (254)
+.++| +||++++
T Consensus 227 i~~~l--~G~~l~~ 238 (274)
T 2qe6_A 227 IERQF--GDFELVE 238 (274)
T ss_dssp HHHTT--TTCEECT
T ss_pred HHHHh--CCCeEcc
Confidence 99999 5998765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=132.07 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=108.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC-c-cEEEecccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTT 168 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~ 168 (254)
+++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. ++. . |+|++.+++|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 46789999999999999999998 557 999999 8888887664 6899999999875 444 3 99999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
+++. ..+|++++++|+|||++++.+........ .. .+...... ......++.+++.++++++||++++.
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~----~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGYACIAILGPTAKPR---EN----SYPRLYGK--DVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGG---GG----GGGGGGTC--CCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhh---hh----hhhhhccc--cccccCCCHHHHHHHHHHcCCEEEEe
Confidence 8644 68999999999999999998864432211 00 00100000 11234478999999999999999988
Q ss_pred EEc
Q 025363 249 YRV 251 (254)
Q Consensus 249 ~~~ 251 (254)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=134.25 Aligned_cols=153 Identities=8% Similarity=0.042 Sum_probs=113.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DA 159 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~ 159 (254)
..+.+.+.++ ..++.+|||||||+|.++..+++ ++.+ ++++|+ +.+++.++...+++|+.+|+.+. ++. . |+
T Consensus 22 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~ 97 (261)
T 3ege_A 22 IVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDG 97 (261)
T ss_dssp HHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSE
T ss_pred HHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeE
Confidence 3455666663 67789999999999999999997 5677 999999 99999988878999999999775 443 3 99
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
|++.+++|++++ ...++++++++|| ||++++.+...+.... .+.. ..+... .. .......+.+++. +++
T Consensus 98 v~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~~-~~--~~~~~~~~~~~~~-~l~ 166 (261)
T 3ege_A 98 VISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPFL-WE--DALRFLPLDEQIN-LLQ 166 (261)
T ss_dssp EEEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHHH-HH--HHHTSCCHHHHHH-HHH
T ss_pred EEEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHHH-hh--hhhhhCCCHHHHH-HHH
Confidence 999999999954 4689999999999 9999998875432211 1110 001100 00 1112335678888 999
Q ss_pred hCCCCeeeEEEc
Q 025363 240 FAGFPHLRLYRV 251 (254)
Q Consensus 240 ~aGf~~~~~~~~ 251 (254)
++||+.+++..+
T Consensus 167 ~aGF~~v~~~~~ 178 (261)
T 3ege_A 167 ENTKRRVEAIPF 178 (261)
T ss_dssp HHHCSEEEEEEC
T ss_pred HcCCCceeEEEe
Confidence 999999887765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=135.74 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=106.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC-c-cEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA-A-DAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~-~-D~v~~~~vlh~ 168 (254)
.+|||||||+|.++..+++ ++.+ ++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 5999999999999999876 4567 999999 8888776643 3599999999887444 3 99999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
+++++...++++++++|||||+|++.+.........+ ...++.++|.++++++||+++++
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP--------------------PYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS--------------------SCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC--------------------CccCCHHHHHHHHHHcCCeEEEE
Confidence 9988889999999999999999999876543221100 11258899999999999999988
Q ss_pred EEcc
Q 025363 249 YRVL 252 (254)
Q Consensus 249 ~~~~ 252 (254)
..+.
T Consensus 205 ~~~~ 208 (235)
T 3lcc_A 205 EENP 208 (235)
T ss_dssp EECT
T ss_pred EecC
Confidence 7654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=131.71 Aligned_cols=140 Identities=8% Similarity=-0.013 Sum_probs=105.2
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------------CCcEEEeC
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------------------PGVTHIGG 148 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------------~~i~~~~~ 148 (254)
+++.+ ...++.+|||+|||+|..+..++++ +.+ ++++|+ +.|++.+++. .+++++.+
T Consensus 14 ~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~--g~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 14 YWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHH-CCCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC--CCe-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 33444 2567889999999999999999998 457 999999 8898876532 47999999
Q ss_pred CCCCC-CC--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhcccc
Q 025363 149 DMFKS-IP--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA 224 (254)
Q Consensus 149 d~~~~-~p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (254)
|+++. .+ +. |+|++..++|++++++..+++++++++|||||++++.....+.... ..
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~-------------------~~ 150 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-------------------EG 150 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-------------------SS
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc-------------------CC
Confidence 99876 33 23 9999999999999888889999999999999995554433221100 00
Q ss_pred CceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 225 KGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 225 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.....+.+++.+++++ ||++..+...
T Consensus 151 ~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 151 PPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 0112578899999988 9988776543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-18 Score=138.91 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=111.1
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~- 157 (254)
.+++.+....+..+|||||||+|.++..+++.+|. .+ ++++|+ +.+++.+++. .+++++.+|+.+. .++.
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 34444434567899999999999999999999985 77 999999 8888766543 3799999999875 4444
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc-----C---CCCCChhhhhhcccchHhhhhccccCceec
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL-----P---DDSNESQRTRALLEGDIFVMTIYRAKGNHR 229 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (254)
|+|++..++|++++. .+++++++++|||||++++.++.. . +....+.......+..+........+....
T Consensus 91 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 91 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred eEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 999999999999655 589999999999999999998761 1 111100000000011111000001122234
Q ss_pred CHHHHHHHHHhCCCCeeeEE
Q 025363 230 TEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 230 t~~e~~~ll~~aGf~~~~~~ 249 (254)
+..++.++++++||+.+++.
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 56789999999999988763
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=142.11 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=111.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC--------------CCcEEEeCCCCC------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI--------------PGVTHIGGDMFK------ 152 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~--------------~~i~~~~~d~~~------ 152 (254)
..++.+|||||||+|.++..+++.+ |+.+ ++++|+ +.+++.++++ ++++|+.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 3467899999999999999999987 6778 999999 8888877653 589999999987
Q ss_pred -CCCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceec
Q 025363 153 -SIPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHR 229 (254)
Q Consensus 153 -~~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (254)
+++. . |+|++..++|++++ ...+|++++++|||||+|++.+............ . ...... ...+..+
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-----~-~~~~~~--~~~~~~~ 229 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ-----Q-DPILYG--ECLGGAL 229 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHH-----H-CHHHHH--TTCTTCC
T ss_pred CCCCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHh-----h-hHHHhh--cccccCC
Confidence 4443 3 99999999999865 4699999999999999999998776543211110 0 111111 1223457
Q ss_pred CHHHHHHHHHhCCCCeeeEEE
Q 025363 230 TEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 230 t~~e~~~ll~~aGf~~~~~~~ 250 (254)
+.++|.++|+++||+.+++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999887654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=134.26 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=106.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCCCCC-c-cEEEeccccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKSIPA-A-DAIFMKWVLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~~p~-~-D~v~~~~vlh~~~ 170 (254)
.++.+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++.+++|+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 3567899999999999999998865 5 999999 8888777654 2899999999776443 3 9999999999996
Q ss_pred HHHHHHHHHHHH-HhCCCCCEEEEEccccCCCCCChhh---hhhccc--chHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 171 DDECKLIMENCY-KALPAGGKLIACEPVLPDDSNESQR---TRALLE--GDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 171 ~~~~~~il~~~~-~~L~pgG~l~i~d~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
+. .++|++++ ++|||||+|++.++....... ... ...... +.-.... ......++.+++.++++++||+
T Consensus 118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~ 192 (250)
T 2p7i_A 118 DP--VALLKRINDDWLAEGGRLFLVCPNANAVSR-QIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQ 192 (250)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHH-HHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCE
T ss_pred CH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHH-HHHHHcCccccchhccccccc--ccccccCCHHHHHHHHHHCCCe
Confidence 54 68999999 999999999998764321100 000 000000 0000000 1123457999999999999999
Q ss_pred eeeEEEc
Q 025363 245 HLRLYRV 251 (254)
Q Consensus 245 ~~~~~~~ 251 (254)
++++..+
T Consensus 193 ~~~~~~~ 199 (250)
T 2p7i_A 193 VTYRSGI 199 (250)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9987654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=137.65 Aligned_cols=166 Identities=10% Similarity=0.071 Sum_probs=114.9
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCC
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMF 151 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~ 151 (254)
......+++.++ .. ..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.
T Consensus 69 ~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 69 TSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred cHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 344566777664 33 349999999999999999988 467 999999 8888877653 47999999998
Q ss_pred CC-CCCc-cEEEe-ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC----CCh--hh---hh---hcc----
Q 025363 152 KS-IPAA-DAIFM-KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS----NES--QR---TR---ALL---- 212 (254)
Q Consensus 152 ~~-~p~~-D~v~~-~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~----~~~--~~---~~---~~~---- 212 (254)
+. .++. |+|++ ..++|++++++..++|++++++|||||+|++......... ... .. .. ...
T Consensus 144 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 223 (299)
T 3g2m_A 144 AFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLP 223 (299)
T ss_dssp BCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEE
T ss_pred cCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEec
Confidence 86 4444 98886 4778888888889999999999999999999766543210 000 00 00 000
Q ss_pred ---cchHhhhh---------ccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 213 ---EGDIFVMT---------IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 213 ---~~~~~~~~---------~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...+.... .....-+.++.++|.++|+++||+++++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 224 AEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00000000 00001124699999999999999999988764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=134.45 Aligned_cols=158 Identities=16% Similarity=0.085 Sum_probs=109.1
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC-c-c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA-A-D 158 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~-~-D 158 (254)
..+.+.++ ..++.+|||||||+|.++..+++..+. + ++++|+ +.+++.+++. .+++++.+|+.+. ++. . |
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence 34555553 557889999999999999999998654 6 999999 8888777653 6899999999765 443 3 9
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC------------CCCCChhhhhhcccch-----Hhhhhc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP------------DDSNESQRTRALLEGD-----IFVMTI 221 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~------------~~~~~~~~~~~~~~~~-----~~~~~~ 221 (254)
+|++..++|++++ ..++|++++++|||||+|++...... ........ .....++ .....
T Consensus 111 ~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 186 (253)
T 3g5l_A 111 VVLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFLG- 186 (253)
T ss_dssp EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEETT-
T ss_pred EEEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeecc-
Confidence 9999999999954 57999999999999999999743211 00000000 0000000 00000
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
.......+|.++|.++|+++||+++++..
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeec
Confidence 00001224999999999999999998764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=136.29 Aligned_cols=159 Identities=16% Similarity=0.081 Sum_probs=112.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-- 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-- 154 (254)
...++..++ . ++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+..
T Consensus 58 l~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 132 (285)
T 4htf_A 58 LDRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH 132 (285)
T ss_dssp HHHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG
T ss_pred HHHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh
Confidence 334555553 3 3679999999999999999988 567 999999 8888877653 57999999997753
Q ss_pred CC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc------cccCc
Q 025363 155 PA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI------YRAKG 226 (254)
Q Consensus 155 p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 226 (254)
+. . |+|++..++|++++. ..+|++++++|||||++++.+....... ........+....... .....
T Consensus 133 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (285)
T 4htf_A 133 LETPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPD 207 (285)
T ss_dssp CSSCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCS
T ss_pred cCCCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCC
Confidence 33 3 999999999999654 6899999999999999999876432110 0000000000000000 00112
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
..++.+++.++++++||+++++..+..
T Consensus 208 ~~~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 208 YPRDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp CCBCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHCCCceeeeeeEEE
Confidence 446899999999999999998887643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=127.98 Aligned_cols=143 Identities=11% Similarity=0.059 Sum_probs=103.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCC-CC-C-ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IP-A-ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~-~p-~-~D~ 159 (254)
..+..+|||||||+|.++..+++..+..+ ++++|+ +.+++.+++. .+++++.+|+... .+ + .|+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA 105 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCE
Confidence 34578999999999999999999988778 999999 8888877643 2799999998654 32 2 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH----
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK---- 235 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~---- 235 (254)
|++..++|++++++..++|++++++|||||.+++...... .... ..+...... .......++.+++.
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-------~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY-------NVKF-ANLPAGKLR-HKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH-------HHHT-C------------CCSCBCHHHHHHHHH
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc-------chhh-ccccccccc-ccccccccCHHHHHHHHH
Confidence 9999999999988889999999999999997776543210 0000 000000000 01112336888888
Q ss_pred HHHHhCCCCeee
Q 025363 236 QLGFFAGFPHLR 247 (254)
Q Consensus 236 ~ll~~aGf~~~~ 247 (254)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 899999998643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=138.67 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=110.9
Q ss_pred CCCCCeEEEecCcccHHHHHHH-HHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCc-cEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAA-DAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~-~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~-D~v~~~ 163 (254)
..++.+|||||||+|..+..++ ...|+.+ ++++|+ +.+++.++++ ++++++.+|+.+. .++. |+|++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 5678899999999999999986 5678888 999999 8888777643 4599999999876 4443 999999
Q ss_pred cccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhc-----ccchHhhhhccccC--ceecCHHH
Q 025363 164 WVLTTWTD-DECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRAL-----LEGDIFVMTIYRAK--GNHRTEQE 233 (254)
Q Consensus 164 ~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~--~~~~t~~e 233 (254)
.++|++++ +....++++++++|||||+|++.+...+...... +..... ......... .... ...++.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTR-LIQPRWNALRTHAQ 273 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHH-TTCCSCCCCCCHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHH-HHhhhhhccCCHHH
Confidence 99999864 4456799999999999999999887654332110 000000 000000000 0011 12368999
Q ss_pred HHHHHHhCCCCeeeEEE
Q 025363 234 FKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~ 250 (254)
+.++++++||+++++..
T Consensus 274 ~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEc
Confidence 99999999999998875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=129.04 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=103.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCC-CCC--ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IPA--ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~-~p~--~D~ 159 (254)
..+..+|||||||+|.++..+++..+..+ ++++|+ +.+++.+++. .+++++.+|+... .+. .|+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDA 105 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCE
Confidence 34578999999999999999999988788 999999 8888877653 1899999999554 222 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH----
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK---- 235 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~---- 235 (254)
|++..++|++++++..+++++++++|||||.+++.........-. .+...... .......++.+++.
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG--------NLFEGNLR-HRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC--------CT-----G-GGCCTTSBCHHHHHHHHH
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc--------ccCccccc-ccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999999666544321100000 00000000 01112335888888
Q ss_pred HHHHhCCCCeee
Q 025363 236 QLGFFAGFPHLR 247 (254)
Q Consensus 236 ~ll~~aGf~~~~ 247 (254)
++++++||++..
T Consensus 177 ~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 177 KVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHCCcEEEE
Confidence 889999997643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=127.34 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=108.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCC-CCC--ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IPA--ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~-~p~--~D~ 159 (254)
.+++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .++++..+|+.+. ++. .|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 104 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF 104 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence 346789999999999999999998 557 999999 8887766542 2579999999875 444 399
Q ss_pred EEeccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc--c-----------ccC
Q 025363 160 IFMKWVLTTWTD-DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI--Y-----------RAK 225 (254)
Q Consensus 160 v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~ 225 (254)
|++..++|++++ ++...+|++++++|||||++++.+....... +.. .......+..... . ...
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLY-RKRYLHDFPITKEEGSFLARDPETGETEFI 181 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHH-HHHHHHHHHHHCSTTEEEEECTTTCCEEEE
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHH-HHHhhhhccchhhhcceEecccccCCccee
Confidence 999999999975 4566899999999999999999987653321 110 0000000000000 0 000
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
...++.++|.++++++||+++++..
T Consensus 182 ~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 1346999999999999999988764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=132.28 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=110.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCC-c-cEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA-A-DAI 160 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~-~-D~v 160 (254)
...+++.++ ..++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|
T Consensus 22 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 99 (259)
T 2p35_A 22 ARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLL 99 (259)
T ss_dssp HHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEE
Confidence 345666663 66788999999999999999999999889 999999 8888887653 6899999999775433 3 999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccch---Hhh-hh-ccccCceecCHHHHH
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGD---IFV-MT-IYRAKGNHRTEQEFK 235 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~~~t~~e~~ 235 (254)
++..++|++++ ...+|++++++|||||++++........ +.......... ... .. .........+.++|.
T Consensus 100 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T 2p35_A 100 YANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYF 174 (259)
T ss_dssp EEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHH
T ss_pred EEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHH
Confidence 99999999854 5689999999999999999987533211 11000000000 000 00 000012346899999
Q ss_pred HHHHhCCCCee
Q 025363 236 QLGFFAGFPHL 246 (254)
Q Consensus 236 ~ll~~aGf~~~ 246 (254)
++|+++||++.
T Consensus 175 ~~l~~aGf~v~ 185 (259)
T 2p35_A 175 NALSPKSSRVD 185 (259)
T ss_dssp HHHGGGEEEEE
T ss_pred HHHHhcCCceE
Confidence 99999999743
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=138.57 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=104.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------------------------
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------------------------- 140 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------------------------- 140 (254)
.++.+|||||||+|.++..+++.++..+ ++++|+ +.+++.+++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 3578999999999999999999999888 999999 8888766542
Q ss_pred ------------------------------CCcEEEeCCCCCCC------CC--ccEEEeccccccC----CHHHHHHHH
Q 025363 141 ------------------------------PGVTHIGGDMFKSI------PA--ADAIFMKWVLTTW----TDDECKLIM 178 (254)
Q Consensus 141 ------------------------------~~i~~~~~d~~~~~------p~--~D~v~~~~vlh~~----~~~~~~~il 178 (254)
.+|+|+.+|+.... +. .|+|++..+++++ +++...++|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 37999999998653 22 3999999998554 677889999
Q ss_pred HHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh--CCCCeeeEEEc
Q 025363 179 ENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF--AGFPHLRLYRV 251 (254)
Q Consensus 179 ~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 251 (254)
++++++|+|||+|++....+... .......-.+.. .........+++.++|.+ +||+.+++...
T Consensus 204 ~~~~~~LkpGG~lil~~~~~~~y-----~~~~~~~~~~~~----~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQPWSSY-----GKRKTLTETIYK----NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHEEEEEEEEEECCCHHHH-----HTTTTSCHHHHH----HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHhCCCcEEEEecCCchhh-----hhhhcccHHHHh----hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999999854322110 000000000000 001223457899999999 99998877654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=130.10 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=110.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC-c-c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA-A-D 158 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~-~-D 158 (254)
+.+.+.++ ..++.+|||||||+|.++..+++... .+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. . |
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34556563 56788999999999999999998832 26 999999 8888877654 4799999999775 443 3 9
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC--CCCChhhhhh----cccch---------Hhhhhccc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD--DSNESQRTRA----LLEGD---------IFVMTIYR 223 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~--~~~~~~~~~~----~~~~~---------~~~~~~~~ 223 (254)
+|++..++|++++ ...+|++++++|+|||++++....... .....+.... ..... ..... ..
T Consensus 110 ~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 186 (243)
T 3bkw_A 110 LAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA-KG 186 (243)
T ss_dssp EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH-HS
T ss_pred EEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc-Cc
Confidence 9999999999864 568999999999999999997643110 0000000000 00000 00000 00
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.....+|.++|.++|+++||+++++...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1123368999999999999999988754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-17 Score=129.37 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=85.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc-cEEEe-ccccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA-DAIFM-KWVLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~-D~v~~-~~vlh~~~ 170 (254)
.+..+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. ++++++.+|+.+. .+.. |+|++ ..++|++.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcC
Confidence 4678999999999999999999976 6 999999 8888887654 6799999999875 4333 99995 55898875
Q ss_pred -HHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 171 -DDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 171 -~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.++..++|++++++|+|||++++.+...++
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 467889999999999999999998765543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=130.85 Aligned_cols=150 Identities=14% Similarity=0.039 Sum_probs=108.9
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC-------ccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA-------ADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~-------~D~v~ 161 (254)
...++.+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|+
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEE
Confidence 356678999999999999999999987 6 999999 8888777543 5899999999874 221 48999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc-----ccchHhhhhccccCceecCHHHHHH
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL-----LEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
+..++|++++++..++|++++++|||||+|++.+...++. ....... ....+....-.......++.+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3ggd_A 130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI---DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIEL 206 (245)
T ss_dssp EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH---HHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHH
T ss_pred EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc---HHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHH
Confidence 9999999998888999999999999999999998865421 0000000 0000000000001112368999999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
++ +||+++....+
T Consensus 207 ~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 207 YF--PDFEILSQGEG 219 (245)
T ss_dssp HC--TTEEEEEEECC
T ss_pred Hh--CCCEEEecccc
Confidence 99 99999876554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=134.20 Aligned_cols=161 Identities=14% Similarity=0.055 Sum_probs=113.2
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc-c
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA-D 158 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~-D 158 (254)
...+.+++.++ ..++.+|||||||+|.++..+++ ++.+ ++++|+ +.+++.+++. ++++++.+|+.+. .++. |
T Consensus 44 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 44 QYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp SSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcC
Confidence 34555666664 66788999999999999999998 6778 999999 8888877654 6899999999875 4333 9
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh--hccccCceecCHHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM--TIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~e~~~ 236 (254)
+|++..++|++++. ..+|++++++|||||++++........ ..........+..... ......-..++.+++.+
T Consensus 120 ~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (279)
T 3ccf_A 120 AVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEYVN 195 (279)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHH
T ss_pred EEEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHH
Confidence 99999999998654 589999999999999999976543221 0110000000000000 00000113458999999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
+|+++||+++++...
T Consensus 196 ~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 196 ILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHTEEEEEEEEE
T ss_pred HHHHcCCEEEEEEEe
Confidence 999999998876543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=127.13 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=108.0
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCC--ccEEEec
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA--ADAIFMK 163 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~--~D~v~~~ 163 (254)
+++.++ ..++.+|||||||+|.++..+++... + ++++|+ +.+++.+++. +++++..+| .+++. .|+|++.
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 334442 66788999999999999999999874 6 999999 8888877653 789999999 34443 3999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
.++|++++ ...++++++++|||||++++.+.........+ .....++.+++.++++ ||
T Consensus 83 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 83 NSFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP------------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp SCSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS------------------CGGGCCCHHHHHHHTT--TE
T ss_pred cchhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc------------------hHhhhcCHHHHHHHHh--Cc
Confidence 99999964 46899999999999999999987655432111 0112368999999999 99
Q ss_pred CeeeEEEccC
Q 025363 244 PHLRLYRVLD 253 (254)
Q Consensus 244 ~~~~~~~~~~ 253 (254)
++++...+..
T Consensus 141 ~~~~~~~~~~ 150 (170)
T 3i9f_A 141 VVEKRFNPTP 150 (170)
T ss_dssp EEEEEECSST
T ss_pred EEEEccCCCC
Confidence 9998877653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=128.60 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=112.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hH------HHhhCCCC-------CCcEEEeCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PE------VVAEAPSI-------PGVTHIGGD 149 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~------~~~~~~~~-------~~i~~~~~d 149 (254)
...+++.++ ..++.+|||||||+|.++..+++++ |+.+ ++++|+ +. +++.+++. ++++++.+|
T Consensus 32 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 32 RLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 445666664 7788999999999999999999996 6678 999999 54 66655432 579999998
Q ss_pred -CCCC---CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc
Q 025363 150 -MFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 223 (254)
Q Consensus 150 -~~~~---~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
+... ++. .|+|++..++|++++.. .+++.++++++|||++++.+...+........................
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 4332 233 39999999999998764 478888888888999999998776442111000000000000000000
Q ss_pred --cC--ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 224 --AK--GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 224 --~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.. ...++.+++.++++++||+++++..+
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 12468999999999999999887665
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=128.27 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=102.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-c-cEEEeccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-A-DAIFMKWV 165 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-~-D~v~~~~v 165 (254)
..++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. . |+|++..+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence 567889999999999999999987 456 999999 8888776532 6899999999765 444 3 99999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhcccc---CceecCHHHHHHHHHhCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA---KGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aG 242 (254)
+|++++ ...++++++++|||||++++. ...++ .............+.... ... ....++.+++.++++++|
T Consensus 114 l~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G 187 (263)
T 2yqz_A 114 WHLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEE-GFPVERGLHAKRLKEVEEALRRLG 187 (263)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHH-TCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHh-CCCcccccccCCHHHHHHHHHHcC
Confidence 999864 468999999999999999987 21111 111000000001111000 000 112457899999999999
Q ss_pred CCeeeEE
Q 025363 243 FPHLRLY 249 (254)
Q Consensus 243 f~~~~~~ 249 (254)
|+++.+.
T Consensus 188 f~~~~~~ 194 (263)
T 2yqz_A 188 LKPRTRE 194 (263)
T ss_dssp CCCEEEE
T ss_pred CCcceEE
Confidence 9977654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=125.90 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=111.3
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---CCC-
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA- 156 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---~p~- 156 (254)
....+.+++.++ .+..+|||||||+|.++..+++. + .+ ++++|+ +.+++.+++. ..++..+|+.+. ++.
T Consensus 19 ~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 19 NAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp -CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTT
T ss_pred HHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCC
Confidence 334556666663 56789999999999999999988 4 67 999999 8888887764 247888998763 333
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhh-hcccchH---hhhhccccCceecCH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTR-ALLEGDI---FVMTIYRAKGNHRTE 231 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~t~ 231 (254)
. |+|++..++|++++. ..+|++++++|+|||++++..+..... ..... ....... .... ......++.
T Consensus 93 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 165 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD--KTHIRFFTF 165 (230)
T ss_dssp CEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB--TTCCCCCCH
T ss_pred ccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC--cceEEEecH
Confidence 3 999999999998754 589999999999999999987543211 00000 0000000 0000 011244689
Q ss_pred HHHHHHHHhCCCCeeeEEEcc
Q 025363 232 QEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~~~~~ 252 (254)
++|.++++++||+++++..+.
T Consensus 166 ~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 166 NEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEecc
Confidence 999999999999999887653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=123.23 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=109.9
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~ 157 (254)
+.+++.++ ..+..+|||||||+|.++..+++. +.+ ++++|. +.+++.+++. ++++++.+|+.+. .+..
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 34555553 556789999999999999999988 557 999999 8888877643 4799999999775 4333
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|++..++|++++++...++++++++|||||++++.+.........+ ......++.+++.+
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-----------------SCCSCCBCTTHHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-----------------CCCCCccCHHHHHH
Confidence 999999999999877889999999999999999998887654331100 00122357889999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
++++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9986 988876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=120.45 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=107.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-cEE
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-DAI 160 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D~v 160 (254)
..++..+ .+++.+|||||||+|.++..+++. +.+ ++++|. +.+++.+++. ++++++.+|+.+. ++. . |+|
T Consensus 37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence 3455555 356789999999999999999988 457 999999 8888777654 6799999999875 443 3 999
Q ss_pred Eec-cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 161 FMK-WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 161 ~~~-~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
++. .++|++++++...+|++++++|+|||++++..... ..++.+++.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~ 163 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAE 163 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHH
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHH
Confidence 998 89999988888999999999999999999854311 1157788999999
Q ss_pred hCCCCeeeEEEc
Q 025363 240 FAGFPHLRLYRV 251 (254)
Q Consensus 240 ~aGf~~~~~~~~ 251 (254)
++||++++....
T Consensus 164 ~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 164 RVGLELENAFES 175 (195)
T ss_dssp HHTEEEEEEESS
T ss_pred HcCCEEeeeecc
Confidence 999998877543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-17 Score=128.71 Aligned_cols=156 Identities=15% Similarity=0.027 Sum_probs=108.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-----CCC--cc
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-----IPA--AD 158 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-----~p~--~D 158 (254)
.+++.+. ..+..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++..++.+..+|+.+. .+. .|
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444443 445689999999999999999988 557 999999 88998888777888888887654 222 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhh-c-ccchHhhhhccccCceecCHHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRA-L-LEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
+|++..++| .. +...+|++++++|||||+|++.+............... . .+....... .......++.++|.+
T Consensus 119 ~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 194 (227)
T 3e8s_A 119 LICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDW-QPMPWYFRTLASWLN 194 (227)
T ss_dssp EEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCC-CCEEEEECCHHHHHH
T ss_pred EEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCc-ccceEEEecHHHHHH
Confidence 999999999 53 44689999999999999999988755433211000000 0 000000000 000123469999999
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
+|+++||+++++..
T Consensus 195 ~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 195 ALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHTTEEEEEEEC
T ss_pred HHHHcCCeEEEEec
Confidence 99999999998764
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=126.10 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~ 172 (254)
...+|||||||+|.++..|++.+. + ++++|+ +.|++.+++.++|+++.+|+.+. ++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-
Confidence 457899999999999999998853 5 999999 99999999889999999999875 6654 99999999998753
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.+++++++|+|||||+|++.....+
T Consensus 115 --~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 --DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred --HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999876443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=124.87 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=106.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-c-cEEEeccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-A-DAIFMKWV 165 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-~-D~v~~~~v 165 (254)
..+..+|||+|||+|..+..++.. ++.+ ++++|. +.+++.+++. .+++++.+|+.+. ++. . |+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcCh
Confidence 455789999999999985555544 4567 999999 8888877643 5799999999875 443 3 99999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC--hhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
+|+++.++..+++++++++|||||++++.+...++.... ...... .+...... .......++.+++.++++++||
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG--EFLQLERG-EKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT--EEEECC-C-CCEEEEEECHHHHHHTTTTSEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc--cceeccCC-CceeEEecCHHHHHHHHhhcCc
Confidence 999988888999999999999999999998876543210 000000 00000000 0011245699999999999999
Q ss_pred CeeeE
Q 025363 244 PHLRL 248 (254)
Q Consensus 244 ~~~~~ 248 (254)
...+.
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-16 Score=123.71 Aligned_cols=95 Identities=25% Similarity=0.319 Sum_probs=79.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-cEEEecc-cc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA-DAIFMKW-VL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~-D~v~~~~-vl 166 (254)
++..+|||||||+|.++..+++. .+ ++++|+ +.+++.+++. .+++++.+|+.+. .+.. |+|++.. ++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 34689999999999999999887 56 999999 8888877653 5799999999775 4444 9999976 89
Q ss_pred ccC-CHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 TTW-TDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 h~~-~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++ +.++...+|++++++|+|||++++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 887 5677889999999999999999873
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-16 Score=124.73 Aligned_cols=132 Identities=8% Similarity=-0.057 Sum_probs=101.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------------------CCCcEEEeCCCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------------------IPGVTHIGGDMF 151 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------------------~~~i~~~~~d~~ 151 (254)
.++.+|||+|||+|..+..|+++ +.+ ++++|+ +.+++.+++ ..+|+++.+|++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 46789999999999999999987 457 999999 888876632 157999999998
Q ss_pred CC-CC--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCce
Q 025363 152 KS-IP--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGN 227 (254)
Q Consensus 152 ~~-~p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (254)
+. .+ +. |+|+...++|++++++...++++++++|||||++++.....+..... ....
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~-------------------g~~~ 204 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA-------------------GPPF 204 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC-------------------CSSC
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC-------------------CCCC
Confidence 86 32 33 99999999999988888899999999999999997655443221000 0001
Q ss_pred ecCHHHHHHHHHhCCCCeeeEEE
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
..+.+++.+++++ +|+++....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEec
Confidence 1578999999987 598877654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=126.51 Aligned_cols=95 Identities=20% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-cEEEecc-ccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA-DAIFMKW-VLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~-D~v~~~~-vlh 167 (254)
+..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .++. |+|++.. ++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence 5789999999999999999988 456 999999 8888877654 2799999999775 4443 9999998 999
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 168 TWT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 168 ~~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+++ +++..++|++++++|+|||++++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 984 467889999999999999999984
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=126.29 Aligned_cols=143 Identities=13% Similarity=-0.010 Sum_probs=94.5
Q ss_pred CCCCeEEEecCcccHHHHH----HHHHcCCCCeE--EEeec-hHHHhhCCCC-------CCcEE--EeCCCCCC------
Q 025363 96 KGVKRLVDVGGSAGDCLRM----ILQKHRFICEG--INFDL-PEVVAEAPSI-------PGVTH--IGGDMFKS------ 153 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~----l~~~~~~~~~~--~~~D~-~~~~~~~~~~-------~~i~~--~~~d~~~~------ 153 (254)
.++.+|||||||+|.++.. ++.++|+.+ + +++|. ++|++.+++. +++.+ ..++..+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 4567999999999986654 445567774 4 99999 8888866532 34444 45554321
Q ss_pred -CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 154 -IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 154 -~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++. .|+|++.+++|+++|. .++|++++++|||||+|++.+.... ..+... ........-.......++
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SGWDKL---WKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SHHHHH---HHHHGGGSCCCTTCCCCC
T ss_pred ccCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCC----ccHHHH---HHHHHHhccCCCcccCCC
Confidence 123 3999999999999754 6899999999999999999864321 111110 000000000000123468
Q ss_pred HHHHHHHHHhCCCCeeeE
Q 025363 231 EQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~ 248 (254)
.++|.++|+++||+++..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=120.34 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=100.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDDE 173 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~ 173 (254)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+. .+. . |+|++..++|++++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-- 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--
Confidence 789999999999999887654 66788 8888877765 799999998765 443 3 99999999999864
Q ss_pred HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 174 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
...+|++++++|+|||++++.+..... ....... .... ... .......++.++|.++|+++||+++++...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~-~~~~-~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRES----FLGREYE-KNKE-KSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSS----HHHHHHH-HTTT-C-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCcc----HHHHHHH-HHhc-Ccc-hhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 468999999999999999998764321 1110000 0000 000 011234469999999999999999887765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=125.77 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=93.9
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC--------CC
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS--------IP 141 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~--------~~ 141 (254)
.|.+....+.....+.+.... ..++.+|||||||+|..+..+++.+ +..+ ++++|+ +.+++.+++ ..
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~ 89 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDTYK 89 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-CCT
T ss_pred HHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCCCC
Confidence 444444444444444444443 3578899999999999999999987 7778 999999 888887754 36
Q ss_pred CcEEEeCCCCCC-CCC-------c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 142 GVTHIGGDMFKS-IPA-------A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 142 ~i~~~~~d~~~~-~p~-------~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+++|+.+|+.+. .+. . |+|++..++|++ +...++++++++|||||+|++.+..
T Consensus 90 ~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 90 NVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp TEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 899999999875 333 3 999999999998 4578999999999999999995443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-16 Score=129.07 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=107.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C-CC-c-cEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I-PA-A-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~-p~-~-D~v~~ 162 (254)
..++.+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. + +. . |+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence 456789999999999999998776 4447 999999 8888776643 3689999999875 4 33 3 99999
Q ss_pred cccccc--CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC---------CChhh--------hh--hcccchHhhhh-
Q 025363 163 KWVLTT--WTDDECKLIMENCYKALPAGGKLIACEPVLPDDS---------NESQR--------TR--ALLEGDIFVMT- 220 (254)
Q Consensus 163 ~~vlh~--~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~---------~~~~~--------~~--~~~~~~~~~~~- 220 (254)
..++|+ .+.++..++|++++++|||||+|++..+...... ..... .. ......+....
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 219 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDS 219 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTS
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchh
Confidence 999998 5677889999999999999999999775421100 00000 00 00000000000
Q ss_pred ccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 221 IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 221 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
+.......++.+++.++++++||+++++..+.
T Consensus 220 ~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 220 VNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp CSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 00001234589999999999999999887653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=117.10 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=93.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cEEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DAIF 161 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~v~ 161 (254)
.+.+++.+....+..+|||||||+|.++..+. .+ ++++|+.+. ++++..+|+.+. ++. . |+|+
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS--------STTEEESCTTSCSCCTTCEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC--------CceEEEeccccCCCCCCCEeEEE
Confidence 34455555334567899999999999998773 46 999998332 678899998875 443 3 9999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+..++|+ .+...+|++++++|+|||++++.+.... ..+.+++.++++++
T Consensus 121 ~~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 121 FCLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKL 169 (215)
T ss_dssp EESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHT
T ss_pred Eehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHC
Confidence 9999984 3457899999999999999999874210 12778999999999
Q ss_pred CCCeeeEEEc
Q 025363 242 GFPHLRLYRV 251 (254)
Q Consensus 242 Gf~~~~~~~~ 251 (254)
||++++....
T Consensus 170 Gf~~~~~~~~ 179 (215)
T 2zfu_A 170 GFKIVSKDLT 179 (215)
T ss_dssp TEEEEEEECC
T ss_pred CCEEEEEecC
Confidence 9998876544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=113.42 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=86.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP--- 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p--- 155 (254)
..++..++ ..++.+|||||||+|.++..+++..|..+ ++++|. +.+++.++++ ++++++.+|+.+..+
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 44566663 77889999999999999999999998888 999999 8888887653 679999999977643
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..|+|++...++ +..++++++.++|||||++++...
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 249999988776 345899999999999999998543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-15 Score=117.49 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=96.5
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCC----CCCCcEEEeCCCCCC--CC---Cc-cEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAP----SIPGVTHIGGDMFKS--IP---AA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~----~~~~i~~~~~d~~~~--~p---~~-D~v~ 161 (254)
+.+++.+|||+|||+|.++..+++.. |..+ ++++|. ++|++.++ +.+++..+.+|...+ .+ +. |+|+
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEE
Confidence 58899999999999999999999985 7778 999999 88876553 347899999988765 22 22 8877
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+... |. ++...+++++++.|||||++++.......+ .. .... ....+..+.|+++
T Consensus 153 ~d~~-~~---~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~------~p~~-~~~~~ev~~L~~~ 207 (233)
T 4df3_A 153 ADVA-QP---EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT------TEPS-EVYKREIKTLMDG 207 (233)
T ss_dssp ECCC-CT---THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH------TCCC-HHHHHHHHHHHHT
T ss_pred Eecc-CC---hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC------CChH-HHHHHHHHHHHHC
Confidence 5432 22 355689999999999999999865322111 00 0000 1123345678999
Q ss_pred CCCeeeEEEccCC
Q 025363 242 GFPHLRLYRVLDY 254 (254)
Q Consensus 242 Gf~~~~~~~~~~~ 254 (254)
||+.++...+..|
T Consensus 208 GF~l~e~i~L~pf 220 (233)
T 4df3_A 208 GLEIKDVVHLDPF 220 (233)
T ss_dssp TCCEEEEEECTTT
T ss_pred CCEEEEEEccCCC
Confidence 9999998877654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=113.45 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=100.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC--ccEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA--ADAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~--~D~v~~~~vlh 167 (254)
++ +|||||||+|.++..+++. +.+ ++++|. +.+++.+++. .++.+..+|+.+. ++. .|+|++. +.
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 45 9999999999999999987 457 999999 8888877653 3799999999876 443 3999984 34
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+++.++...+|++++++|||||++++.+....... ..... .......++.+++.++++ ||++++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGG-----PKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCC-----SSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCC-----CCcceeecCHHHHHHHhc--CceEEE
Confidence 55777889999999999999999999887543210 00000 000123469999999999 999988
Q ss_pred EEEc
Q 025363 248 LYRV 251 (254)
Q Consensus 248 ~~~~ 251 (254)
+...
T Consensus 168 ~~~~ 171 (202)
T 2kw5_A 168 ANNL 171 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=122.60 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=106.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~- 157 (254)
..+++.++ ..++.+|||||||+|.++..+++. +.+ ++++|. +.+++.+++. .++++..+|+.+. .++.
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34455553 446889999999999999999988 457 999999 8888876653 2799999999876 3333
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+|++..++|+++++....++++++++|+|||++++......+....+ ......++.+++.++
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-----------------LPFSFTFAENELKEY 248 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-----------------SCCSCCBCTTHHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-----------------CCccccCCHHHHHHH
Confidence 999999999999988889999999999999999888766544321110 001123567788888
Q ss_pred HHhCCCCeeeEEE
Q 025363 238 GFFAGFPHLRLYR 250 (254)
Q Consensus 238 l~~aGf~~~~~~~ 250 (254)
++. |+++....
T Consensus 249 ~~~--~~~~~~~~ 259 (286)
T 3m70_A 249 YKD--WEFLEYNE 259 (286)
T ss_dssp TTT--SEEEEEEC
T ss_pred hcC--CEEEEEEc
Confidence 854 87776643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-16 Score=127.02 Aligned_cols=140 Identities=16% Similarity=0.049 Sum_probs=98.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------------------------------- 140 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------------------------------- 140 (254)
..++.+|||||||+|.++..++.... .+ ++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 45678999999999988766554421 25 899999 8888865431
Q ss_pred --CCcE-EEeCCCCCCCC-----C--ccEEEeccccccCC--HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhh
Q 025363 141 --PGVT-HIGGDMFKSIP-----A--ADAIFMKWVLTTWT--DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRT 208 (254)
Q Consensus 141 --~~i~-~~~~d~~~~~p-----~--~D~v~~~~vlh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~ 208 (254)
.+|. ++.+|+.+..| . .|+|++..+||+.. .++..++|++++++|||||+|++.+......
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~------- 203 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS------- 203 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-------
Confidence 1233 88999988421 2 39999999999742 3567889999999999999999987542210
Q ss_pred hhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 209 RALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
....- .......++.+++.++|+++||+++++...
T Consensus 204 ---~~~g~-----~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 ---YMVGK-----REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ---EEETT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---ceeCC-----eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00000 000112358999999999999999887653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-15 Score=131.12 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=108.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC----C--C-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS----I--P- 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~----~--p- 155 (254)
..+.+++.+. ..++.+|||||||+|.++..++++ +.+ ++++|+ +.+++.+++. .+......+... + +
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~-v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVR-HLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCE-EEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCc-EEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 5666777774 778899999999999999999987 346 999999 8888888765 344333222111 1 1
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHH
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
+ .|+|++.+++||++ +...+|++++++|||||++++........ ... ..++. . .......++.+++
T Consensus 170 ~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~~-~~~~~--~--~~~~~~~~s~~~l 236 (416)
T 4e2x_A 170 GPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDI------VAK-TSFDQ--I--FDEHFFLFSATSV 236 (416)
T ss_dssp CCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHH------HHH-TCGGG--C--STTCCEECCHHHH
T ss_pred CCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHh------hhh-cchhh--h--hhhhhhcCCHHHH
Confidence 2 39999999999996 45799999999999999999975533210 000 00110 0 0122345799999
Q ss_pred HHHHHhCCCCeeeEEEcc
Q 025363 235 KQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 235 ~~ll~~aGf~~~~~~~~~ 252 (254)
.++++++||+++++..++
T Consensus 237 ~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 237 QGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEEcc
Confidence 999999999999988765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=124.42 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=103.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C-----------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P----------------------------- 141 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~----------------------------- 141 (254)
..++.+|||||||+|.++..+++..+ .+ ++++|+ +.+++.+++. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 34578999999999999998887755 46 999999 8888776432 1
Q ss_pred ---Cc-EEEeCCCCCC-C-C----Cc-cEEEeccccccCCH--HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhh
Q 025363 142 ---GV-THIGGDMFKS-I-P----AA-DAIFMKWVLTTWTD--DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRT 208 (254)
Q Consensus 142 ---~i-~~~~~d~~~~-~-p----~~-D~v~~~~vlh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~ 208 (254)
++ .++.+|+.+. . + .. |+|++..++|++++ ++...+|++++++|||||+|++.+......
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~------- 204 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY------- 204 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-------
Confidence 17 8999999875 2 2 23 99999999994432 467899999999999999999988532210
Q ss_pred hhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 209 RALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
.... . ........+.+++.++|+++||+++++....
T Consensus 205 ---~~~~----~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ---YMIG----E-QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ---EEET----T-EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ---EEcC----C-ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 0 0001123588999999999999999887643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=126.14 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=96.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-C---------------------------------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-P--------------------------------- 141 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~--------------------------------- 141 (254)
++.+|||||||+|.++ .++...+..+ ++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFED-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSE-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCe-EEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 5789999999999944 3444434557 999999 8888765431 0
Q ss_pred --CcEEEeCCCCCCC-------CC--ccEEEeccccccCCH--HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhh
Q 025363 142 --GVTHIGGDMFKSI-------PA--ADAIFMKWVLTTWTD--DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRT 208 (254)
Q Consensus 142 --~i~~~~~d~~~~~-------p~--~D~v~~~~vlh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~ 208 (254)
.+.++.+|+.+.. +. .|+|++..+||++++ ++..++|++++++|||||+|++.+......
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~------- 221 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------- 221 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-------
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-------
Confidence 1456667887631 22 399999999998543 367899999999999999999986432110
Q ss_pred hhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 209 RALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.... . .......++.++|.++|+++||+++++...
T Consensus 222 ---~~~~----~-~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 ---YLAG----E-ARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ---EEET----T-EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---EEcC----C-eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 0000 0 000112358999999999999999887654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-15 Score=123.55 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=86.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~ 153 (254)
.+.+.+.++ ..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. .++.+..+|+.+.
T Consensus 46 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (293)
T 3thr_A 46 KAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 121 (293)
T ss_dssp HHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence 344444443 4567899999999999999999984 46 999999 8888877531 5788999998763
Q ss_pred ----CCC-c-cEEEec-cccccCCH-----HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 ----IPA-A-DAIFMK-WVLTTWTD-----DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 ----~p~-~-D~v~~~-~vlh~~~~-----~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++. . |+|++. +++|++++ ++..++|++++++|||||+|++...
T Consensus 122 ~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 122 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 233 3 999998 89999988 7789999999999999999998754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=107.77 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=94.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC-c-cEEEeccccccCCHH
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~-~-D~v~~~~vlh~~~~~ 172 (254)
.++.+|||+|||+|.++..++++. + ++++|+ +.+++. .++++++.+|+.++.+. . |+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 346699999999999999999886 6 999999 888877 46899999999987553 3 999998888854433
Q ss_pred -------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCe
Q 025363 173 -------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPH 245 (254)
Q Consensus 173 -------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 245 (254)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcE
Confidence 3467889999999 999999866321 24567889999999998
Q ss_pred eeEEE
Q 025363 246 LRLYR 250 (254)
Q Consensus 246 ~~~~~ 250 (254)
..+..
T Consensus 144 ~~~~~ 148 (170)
T 3q87_B 144 RILKV 148 (170)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=112.74 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=96.9
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC----CCCCCcEEEeCCCCC----C-CCCc-
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA----PSIPGVTHIGGDMFK----S-IPAA- 157 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~----~~~~~i~~~~~d~~~----~-~p~~- 157 (254)
++.+ ...++.+|||+|||+|..+..+++.++..+ ++++|. +.+++.+ +..+++.++.+|+.+ . ++..
T Consensus 67 l~~~-~~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVM-PIKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCC-CCCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred cccc-CCCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence 3444 366788999999999999999999988667 999999 8777543 334789999999987 3 3333
Q ss_pred cEEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 DAIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 D~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|+ |++++ .....+++++++.|||||++++. ..........+ . .....+++.
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~----------~~~~~~~l~- 198 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------P----------KEIFKEQKE- 198 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------H----------HHHHHHHHH-
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------H----------HHhhHHHHH-
Confidence 9988 44433 34467799999999999999996 21111100000 0 011236777
Q ss_pred HHHhCCCCeeeEEEccC
Q 025363 237 LGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~~ 253 (254)
+|+++||+.++...+..
T Consensus 199 ~l~~~Gf~~~~~~~~~~ 215 (230)
T 1fbn_A 199 ILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp HHHHHTEEEEEEEECTT
T ss_pred HHHHCCCEEEEEEccCC
Confidence 89999999988877643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=115.29 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCCeEEEecCcc--cHHHHHHH-HHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC-----C---C-c
Q 025363 97 GVKRLVDVGGSA--GDCLRMIL-QKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI-----P---A-A 157 (254)
Q Consensus 97 ~~~~vlDvG~G~--G~~~~~l~-~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~-----p---~-~ 157 (254)
+..+|||||||+ +..+..++ +..|+.+ ++.+|. |.|++.++.. .+++|+.+|+.+.. | . .
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 457999999997 33445554 4579988 999999 9999988753 36999999998741 1 1 1
Q ss_pred c-----EEEeccccccCCHHH-HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCH
Q 025363 158 D-----AIFMKWVLTTWTDDE-CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTE 231 (254)
Q Consensus 158 D-----~v~~~~vlh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 231 (254)
| +|++..+||++++++ ...+|++++++|+|||+|++.+...+.. +..... ........ ......||.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~~~~--~~~~~~~~--g~p~~~rs~ 229 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQEVGR--VAREYAAR--NMPMRLRTH 229 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHHHHH--HHHHHHHT--TCCCCCCCH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHHHHH--HHHHHHhc--CCCCccCCH
Confidence 3 688999999999865 6899999999999999999998765422 111110 11111111 112355899
Q ss_pred HHHHHHHHhCCCCeee
Q 025363 232 QEFKQLGFFAGFPHLR 247 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~ 247 (254)
+|+.++|. ||++++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999994 998654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=121.88 Aligned_cols=113 Identities=13% Similarity=0.221 Sum_probs=91.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------------~~~i~~~~~ 148 (254)
+..+++.+. ..++.+|||||||+|..+..++...+..+ ++++|+ +.+++.+++ ..+|+|+.+
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 556777774 78899999999999999999999887667 999999 766655542 257999999
Q ss_pred CCCCC-CC----CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC
Q 025363 149 DMFKS-IP----AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 202 (254)
Q Consensus 149 d~~~~-~p----~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 202 (254)
|+++. ++ .+|+|+++.+++ + .+..+.|+++++.|||||+|++.|...++..
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 99886 42 359999987764 2 4567888999999999999999999887653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-15 Score=115.46 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=84.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCCCCC-c-cEEEeccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKSIPA-A-DAIFMKWVLT 167 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~~p~-~-D~v~~~~vlh 167 (254)
..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++..++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KR-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLY 125 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EE-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHH
Confidence 5667899999999999999999885 35 999999 8888776543 5799999999887543 3 9999999999
Q ss_pred cCCH-HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTD-DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++++ ++..++|++++++|||||++++...
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9985 5667899999999999999999764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=112.30 Aligned_cols=142 Identities=8% Similarity=0.022 Sum_probs=94.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhh----CCC------CCCcEEEeCCCCCC-CCCc-cEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAE----APS------IPGVTHIGGDMFKS-IPAA-DAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~----~~~------~~~i~~~~~d~~~~-~p~~-D~v~ 161 (254)
..++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++. +++ .++++++.+|+.+. .+.. |.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 56688999999999999999999999989 999999 876664 222 15899999999875 3332 6665
Q ss_pred ecc---cc--ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 162 MKW---VL--TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 162 ~~~---vl--h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
+.. .+ |++++ ...+|++++++|||||++++......-....+ .+... .........+++..
T Consensus 104 ~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVP---------EVGEH---PEPTPDSADEWLAP 169 (218)
T ss_dssp EESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---------GGTTC---CCCCHHHHHHHHHH
T ss_pred EEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEecccccccccc---------ccccC---CccchHHHHHHHHH
Confidence 322 11 12222 26899999999999999998432211110000 00000 00011223456888
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
+++++||++.++..+
T Consensus 170 ~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 170 RYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCCceeeecc
Confidence 999999999887654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=114.62 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=90.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhC---CCC------CCcEEEeCCCCCCCCC--ccEEEe
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEA---PSI------PGVTHIGGDMFKSIPA--ADAIFM 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~---~~~------~~i~~~~~d~~~~~p~--~D~v~~ 162 (254)
.++.+|||||||+|.++..++++.|+.+ ++++|+ +.|++.+ +++ +++.|+.+|+.+. |. .|.|.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEE
Confidence 4678999999999999999999888888 999998 3454443 443 5799999998765 43 255554
Q ss_pred ccccccCCHH------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 163 KWVLTTWTDD------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 163 ~~vlh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
..+...|+.. ....+|++++++|||||++++...........+.. .. .. . .........+++.+
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~---~~--~~---~--~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIK---KR--GL---P--LLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHH
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhh---hc--CC---C--CCChhhcchHHHHH
Confidence 4444334321 11368999999999999999944332221000000 00 00 0 00001112235999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
+++++||++.++...
T Consensus 171 ~l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 171 ELSNSGFRIDDVKEL 185 (225)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHcCCCeeeeeec
Confidence 999999998887654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-14 Score=114.14 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCeEEEecCcccH----HHHHHHHHcC----CCCeEEEeec-hHHHhhCCCC---------------------------
Q 025363 97 GVKRLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVAEAPSI--------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~----~~~~l~~~~~----~~~~~~~~D~-~~~~~~~~~~--------------------------- 140 (254)
+..+|+|+|||||. .++.+++..+ +.+ +++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 35799999999998 5666667655 357 999999 8898877542
Q ss_pred ----------CCcEEEeCCCCCC-CC--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 141 ----------PGVTHIGGDMFKS-IP--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 141 ----------~~i~~~~~d~~~~-~p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.+|.|..+|+.++ ++ +. |+|+|++++++++++...+++++++++|+|||+|++.
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2689999999985 54 33 9999999999999888899999999999999999883
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=109.34 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=82.4
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C-CcEEEeCCCCCCCC---
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKSIP--- 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~-~i~~~~~d~~~~~p--- 155 (254)
.+++.++ ..++.+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.+++. + ++ ++.+|..+.++
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3455553 67788999999999999999999998888 999999 8888877642 3 78 88899877643
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ .|+|++...+|+ ..++++++++|||||++++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 2 399999999986 4789999999999999998664
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=112.13 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=94.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC-CeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-cEEEeccccccCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWT 170 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~ 170 (254)
++.+|||||||+|.++..+ +. + ++++|. +.+++.+++. ++++++.+|+.+. ++. . |+|++.+++|+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 6789999999999999877 44 6 999999 8888877654 6899999999775 444 3 9999999999986
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
+ ..++|++++++|||||++++.+..... .+.... ......-.. .....+.+|.+++.++++ |
T Consensus 110 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~-~~~~~~~~~-~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 110 D--VERVLLEARRVLRPGGALVVGVLEALS----PWAALY-RRLGEKGVL-PWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp C--HHHHHHHHHHHEEEEEEEEEEEECTTS----HHHHHH-HHHHHTTCT-TGGGCCCCCHHHHHHHHC--S
T ss_pred C--HHHHHHHHHHHcCCCCEEEEEecCCcC----cHHHHH-HHHhhccCc-cccccccCCHHHHHHHhc--C
Confidence 4 468999999999999999998764321 111100 000000000 011234579999999998 7
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-15 Score=120.53 Aligned_cols=134 Identities=14% Similarity=0.060 Sum_probs=91.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CCCc--cEEEe--
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IPAA--DAIFM-- 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p~~--D~v~~-- 162 (254)
.++.+|||||||+|..+..+++..|. + ++++|+ |.+++.+++. .++.++.+|+.+. ++.. |.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence 45789999999999999999887664 6 899999 9999887653 5688888886442 3432 77764
Q ss_pred ---ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 163 ---KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 163 ---~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
...++++ .+...++++++|+|||||+|++.+...... .....++ .-.....+.+...|.
T Consensus 137 ~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~---------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 137 YPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS---------DITIMFEETQVPALL 198 (236)
T ss_dssp CCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS---------CHHHHHHHHTHHHHH
T ss_pred eecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh---------hhhhhhHHHHHHHHH
Confidence 4455555 556789999999999999998865322100 0000000 001122455667788
Q ss_pred hCCCCeeeEE
Q 025363 240 FAGFPHLRLY 249 (254)
Q Consensus 240 ~aGf~~~~~~ 249 (254)
++||++..+.
T Consensus 199 eaGF~~~~i~ 208 (236)
T 3orh_A 199 EAGFRRENIR 208 (236)
T ss_dssp HHTCCGGGEE
T ss_pred HcCCeEEEEE
Confidence 9999976553
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=113.21 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=101.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~ 156 (254)
.+.+++.++ .+..+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ ++++++.+|+++..+ .
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 175 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQ 175 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccC
Confidence 344555542 4567999999999999999999999888 999999 8888877653 479999999988753 3
Q ss_pred c-cEEEecc-------------ccccCCH----------HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc
Q 025363 157 A-DAIFMKW-------------VLTTWTD----------DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL 212 (254)
Q Consensus 157 ~-D~v~~~~-------------vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~ 212 (254)
. |+|++.. ++++.+. +....+++++++.|+|||++++...
T Consensus 176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---------------- 239 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---------------- 239 (276)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----------------
T ss_pred CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------
Confidence 3 9999973 3333221 3457899999999999999988421
Q ss_pred cchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 213 EGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 213 ~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
..+.+++.++++++||+.+++..
T Consensus 240 ---------------~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 240 ---------------WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp ---------------SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred ---------------chHHHHHHHHHHHCCCcEEEEEe
Confidence 02456788999999998776653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=112.10 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=95.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCCc-cEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPAA-DAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~~-D~v~~~~vl 166 (254)
..++.+|||||||+|.++..+++ .+..+ ++++|+ +.+++.++++ .++++..+|+.+..+.. |+|++...+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcH
Confidence 34678999999999999999776 45567 999999 8888877653 34999999998765554 999998877
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
|+ ...++++++++|+|||++++.+... .+.+++.++++++||+.+
T Consensus 136 ~~-----~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 136 EI-----LLDLIPQLDSHLNEDGQVIFSGIDY------------------------------LQLPKIEQALAENSFQID 180 (205)
T ss_dssp HH-----HHHHGGGSGGGEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTEEEE
T ss_pred HH-----HHHHHHHHHHhcCCCCEEEEEecCc------------------------------ccHHHHHHHHHHcCCceE
Confidence 64 4688999999999999999965421 134567889999999988
Q ss_pred eEEEc
Q 025363 247 RLYRV 251 (254)
Q Consensus 247 ~~~~~ 251 (254)
++...
T Consensus 181 ~~~~~ 185 (205)
T 3grz_A 181 LKMRA 185 (205)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 87654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=116.96 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CCC--ccEEEe-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IPA--ADAIFM-K 163 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p~--~D~v~~-~ 163 (254)
.++.+|||||||+|..+..+++..+ .+ ++++|+ +.+++.++++ .+++++.+|+.+. +++ .|+|++ .
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-Ce-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 4578999999999999999966543 36 899999 8888777643 5689999998663 443 399998 5
Q ss_pred cc--cccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 164 WV--LTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 164 ~v--lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+. .+.+.......++++++++|||||+|++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 54 34444455668899999999999999987754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-14 Score=113.98 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCC----CCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFK----SIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~----~~p 155 (254)
..+.+++.++ ..++.+|||||||+|.++..++++ +.+ ++++|+ +.|++.++++ ..+.....++.. ..+
T Consensus 33 ~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~-V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 33 DRENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GAS-VTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA 108 (261)
T ss_dssp HHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT
T ss_pred HHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHHHhccceeeeeecccccccccC
Confidence 4566777774 778899999999999999999987 456 999999 8899887654 122222222221 122
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. .|+|++..++|+++.++...++++++++| |||+|++.-.
T Consensus 109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 2 39999999999999888999999999999 9999998743
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=111.03 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~ 157 (254)
...+++... ..+..+|||+|||+|..+..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .+..
T Consensus 30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 105 (252)
T 1wzn_A 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE 105 (252)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCC
Confidence 344555552 456789999999999999999987 557 999999 8888877643 4799999999875 4444
Q ss_pred -cEEEec-cccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 158 -DAIFMK-WVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 158 -D~v~~~-~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|+|++. ..+++++.++..++|++++++|+|||++++.-
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999986 45677777888999999999999999988743
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=114.34 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=71.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCC---
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP--- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p--- 155 (254)
.+.+++.++...++.+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ .+++++.+|+.+.++
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 96 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERA 96 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhh
Confidence 344455543236788999999999999999999998888 999999 8898888765 168888999887643
Q ss_pred ---C-ccEEEecccccc------CCHHHH------------------HHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 ---A-ADAIFMKWVLTT------WTDDEC------------------KLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ---~-~D~v~~~~vlh~------~~~~~~------------------~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ .|+|++...++. ++++.. ..++++++++|||||++++.+.
T Consensus 97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3 399999544432 222211 6889999999999999665543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-14 Score=116.00 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=80.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCC-----C--
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKS-----I-- 154 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~-----~-- 154 (254)
.+..+|||||||+|..+..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36789999999999999999874 4567 999999 8888776542 2689999999875 2
Q ss_pred CC-c-cEEEeccccccC--CHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 155 PA-A-DAIFMKWVLTTW--TDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 155 p~-~-D~v~~~~vlh~~--~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+. . |+|++..++|+. +.++...+|++++++|||||++++..+.
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 22 3 999999999976 4467789999999999999999987653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=105.27 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C-CcEEEeCCCCCCCC---
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKSIP--- 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~-~i~~~~~d~~~~~p--- 155 (254)
.++..++ ..++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.++++ + +++++.+|+.+.++
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3455553 677889999999999999999988 667 999999 8888877643 3 79999999988532
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
..|+|++...+ +.. +++++.++|||||++++..... .+..++.
T Consensus 122 ~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~ 164 (204)
T 3njr_A 122 LPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLT 164 (204)
T ss_dssp CCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHH
T ss_pred CCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHH
Confidence 34999987644 123 8999999999999999854321 1234566
Q ss_pred HHHHhCCCCeeeEE
Q 025363 236 QLGFFAGFPHLRLY 249 (254)
Q Consensus 236 ~ll~~aGf~~~~~~ 249 (254)
+++++.|+++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 77888887766654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=107.95 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-c-cEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-A-DAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-~-D~v~~~~vl 166 (254)
..+..+|||||||+|.++..+++..+. + ++++|+ +.+++.+++. +++++..+|+.+. ++. . |+|++..++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 356789999999999999999998654 7 999999 8887776543 5899999999875 443 3 999998888
Q ss_pred ccCC-------------HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 167 TTWT-------------DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 167 h~~~-------------~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+++. .++..++|++++++|||||++++.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 7654 4567899999999999999999988643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-13 Score=104.82 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH----HhhCCCCCCcEEEeCCCCCC-----CCCc-cEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV----VAEAPSIPGVTHIGGDMFKS-----IPAA-DAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~----~~~~~~~~~i~~~~~d~~~~-----~p~~-D~v~~~ 163 (254)
.+++.+|||||||+|..+..+++..+..+ ++++|+ +.+ .+.++...++.++.+|+.+. +++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 56788999999999999999999987667 999999 764 34444446799999998763 2333 999986
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+.+. .+...++++++++|||||+|++.
T Consensus 134 -~~~~---~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 134 -IAQK---NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -CCST---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccCh---hHHHHHHHHHHHHhCCCCEEEEE
Confidence 3322 34456799999999999999997
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=122.55 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=85.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC------------CCCcEEEeCCCCCC-CCC--c
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS------------IPGVTHIGGDMFKS-IPA--A 157 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~------------~~~i~~~~~d~~~~-~p~--~ 157 (254)
..++.+|||||||+|.++..+++.. |..+ ++++|+ +.+++.+++ ..+|+|+.+|+.+. .+. .
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sF 797 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDV 797 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCe
Confidence 3467899999999999999999998 4467 999999 888887754 15799999999876 332 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|++..++|++++.....++++++++|||| .+++..+.
T Consensus 798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999999999988889999999999999 77776654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-14 Score=114.27 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=78.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
..+++.++ ..++.+|||+|||+|..+..+++. .|..+ ++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 100 ~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 100 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 35666664 778899999999999999999998 67788 999999 8887765532 4799999999887554
Q ss_pred --ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 --ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++ ++++ ..++|++++++|||||++++...
T Consensus 178 ~~fD~Vi~-----~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 178 QMYDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CCEEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEE-----cCcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 399998 2332 24789999999999999999763
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-14 Score=111.83 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=87.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCC--C-C-c-cEEEecccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSI--P-A-A-DAIFMKWVLTT 168 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~--p-~-~-D~v~~~~vlh~ 168 (254)
.++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+.. + . . |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 46789999999999999999998 457 999999 8888887654 78999999997653 3 3 3 9999862
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
+...+|++++++|||||+|+... ...+.+++.++++++||+..++
T Consensus 120 ----~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ----GPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ----CCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 23478999999999999998110 0123446788888888887765
Q ss_pred EE
Q 025363 249 YR 250 (254)
Q Consensus 249 ~~ 250 (254)
..
T Consensus 165 ~~ 166 (226)
T 3m33_A 165 DH 166 (226)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=103.84 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=94.4
Q ss_pred HHHHHhhcC--CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHH----hhCCCCCCcEEEeCCCCCC---
Q 025363 85 MTSVLEGYN--GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVV----AEAPSIPGVTHIGGDMFKS--- 153 (254)
Q Consensus 85 ~~~i~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~----~~~~~~~~i~~~~~d~~~~--- 153 (254)
...++..++ .+.++.+|||+|||+|..+..+++.. |..+ ++++|. +.++ +.+++..+|.++.+|+..+
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSY 140 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGT
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhh
Confidence 344444443 37789999999999999999999875 5667 999999 7664 3344447899999998764
Q ss_pred --CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 154 --IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 154 --~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
+.+ .|+|++.... ..+...+++.+++.|||||+|++.-..... |. ...-. -.
T Consensus 141 ~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~------t~~~~-e~ 195 (232)
T 3id6_C 141 KSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DV------TKDPK-EI 195 (232)
T ss_dssp TTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC---------------------------CCSS-SS
T ss_pred hccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------cc------CCCHH-HH
Confidence 122 3999886543 233344556777799999999987321110 00 00001 11
Q ss_pred HHHHHHHHHhCCCCeeeEEEccC
Q 025363 231 EQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
.++..+.|+++||++++...+.-
T Consensus 196 ~~~~~~~L~~~gf~~~~~~~l~p 218 (232)
T 3id6_C 196 YKTEVEKLENSNFETIQIINLDP 218 (232)
T ss_dssp TTHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHCCCEEEEEeccCC
Confidence 23455678899999999887643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=106.97 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=94.2
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCC--CCCCC-c-cEEEec
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMF--KSIPA-A-DAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~--~~~p~-~-D~v~~~ 163 (254)
.+++.+|||+||| +|.++..+++.. +.+ ++++|+ +.+++.++++ .+++++.+|+. ..++. . |+|++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 5678899999999 999999999987 567 999999 8888877653 37999999963 34443 3 999988
Q ss_pred cccccCCHH-----------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc
Q 025363 164 WVLTTWTDD-----------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 226 (254)
Q Consensus 164 ~vlh~~~~~-----------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (254)
-.++..++. ....+++++.+.|||||++++.-...
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------------- 182 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK---------------------------- 182 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------
Confidence 666544321 13789999999999999999853210
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
....+++.++++++||++..+....|
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 01245678889999998776655444
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=102.46 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=87.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C--CcEEEeCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P--GVTHIGGDMFKSIP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~--~i~~~~~d~~~~~p 155 (254)
.+.+++.+. ..++.+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. . +++++.+|+.+..+
T Consensus 41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (194)
T 1dus_A 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence 445666664 667889999999999999999988 567 999999 8887776643 3 49999999988754
Q ss_pred C-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 A-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 ~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. . |+|++...+|+ ..+....++++++++|+|||++++....
T Consensus 117 ~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 117 DRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4 3 99999888874 4567789999999999999999997753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=115.39 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=90.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCc-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAA- 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~- 157 (254)
.+.+++.++ ..+..+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ ..+++..+|+++..++.
T Consensus 185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 455666663 44567999999999999999999999888 999999 8888777653 34678899998765444
Q ss_pred cEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|++..++|+ ++.+...+++++++++|||||++++....
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999999986 34566789999999999999999997653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=103.08 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=92.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhh----CCCCCCcEEEeCCCCCC-----CCCc-cEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAE----APSIPGVTHIGGDMFKS-----IPAA-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~----~~~~~~i~~~~~d~~~~-----~p~~-D~v~~ 162 (254)
..++.+|||+|||+|.++..+++.. |..+ ++++|. +.+++. ++..++++++.+|+.+. .++. |+|++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 6678899999999999999999986 5567 999998 755444 33447899999999873 2333 99997
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
... .......++++++++|||||++++. .........+ .......+++.++ +++
T Consensus 150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~-------------------~~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 150 DVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK-------------------EPEQVFREVEREL-SEY- 203 (227)
T ss_dssp CCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS-------------------CHHHHHHHHHHHH-HTT-
T ss_pred CCC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC-------------------ChhhhhHHHHHHH-Hhh-
Confidence 544 2234456699999999999999997 2211110000 0011245677776 777
Q ss_pred CCeeeEEEccC
Q 025363 243 FPHLRLYRVLD 253 (254)
Q Consensus 243 f~~~~~~~~~~ 253 (254)
|++++...+..
T Consensus 204 f~~~~~~~~~~ 214 (227)
T 1g8a_A 204 FEVIERLNLEP 214 (227)
T ss_dssp SEEEEEEECTT
T ss_pred ceeeeEeccCc
Confidence 99988877643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=110.61 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccEEEeccc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADAIFMKWV 165 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~v~~~~v 165 (254)
...++.+|||||||+|.++..++.+.++.+ ++++|+ +++++.+++. .+|+|+.+|+.+.... .|+|++...
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC
Confidence 477899999999999988777777778888 999999 9999988754 6899999999764322 399998654
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. ++..+++++++++|||||+|++.+.
T Consensus 198 ~-----~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 A-----EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp C-----SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred c-----cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 3446899999999999999999763
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=103.21 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=75.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC-ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA-ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~-~D~v~~~ 163 (254)
..++.+|||+|||+|..+..+++. ..+ ++++|+ +.+++.++++ ++++++..|+... .++ .|+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 567889999999999999999988 567 999999 8898887653 6799998776552 233 3999876
Q ss_pred -ccccc------CCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 164 -WVLTT------WTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 164 -~vlh~------~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
..++. ...+....++++++++|||||++++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 23321 02356678899999999999999997653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=110.41 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=99.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~ 154 (254)
....++..++ ..++.+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ ++++++.+|+.+.+
T Consensus 81 ~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 158 (255)
T 3mb5_A 81 DAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI 158 (255)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence 3445667774 788899999999999999999999 77888 999999 8888877653 45999999999776
Q ss_pred CC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHH
Q 025363 155 PA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 155 p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
+. .|+|++. .++ ...++++++++|+|||++++...... ...
T Consensus 159 ~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~ 201 (255)
T 3mb5_A 159 EEENVDHVILD-----LPQ--PERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVM 201 (255)
T ss_dssp CCCSEEEEEEC-----SSC--GGGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHH
T ss_pred CCCCcCEEEEC-----CCC--HHHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHH
Confidence 55 3999872 332 24789999999999999998653210 233
Q ss_pred HHHHHHHhCC--CCeeeEEEc
Q 025363 233 EFKQLGFFAG--FPHLRLYRV 251 (254)
Q Consensus 233 e~~~ll~~aG--f~~~~~~~~ 251 (254)
++.++++++| |..+++..+
T Consensus 202 ~~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 202 RLHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHHcCCCccccEEEEE
Confidence 5667788888 887766543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-14 Score=106.24 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=78.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C-CcEEEeCCCCCC-CCC-ccEEEeccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKS-IPA-ADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~-~i~~~~~d~~~~-~p~-~D~v~~~~v 165 (254)
.+..+|||+|||+|.++..++...|+++ ++++|+ +.|++.++++ . ++++ .|..+. .+. +|+|++..+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 4578999999999999999999999998 999999 8999888754 2 4555 666555 344 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+|++ ++....+.++.+.|+|||.++..+
T Consensus 125 LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 125 LPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999 444566779999999999988877
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=113.95 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=87.2
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~p 155 (254)
+.+++.++ ..+..+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ .+++|..+|+++.++
T Consensus 212 ~~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~ 289 (375)
T 4dcm_A 212 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 289 (375)
T ss_dssp HHHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred HHHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence 34667664 55568999999999999999999999999 999999 8888877753 258889999998865
Q ss_pred C--ccEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A--ADAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~--~D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++.-.+|. ..+....++++++++.|||||+++++.
T Consensus 290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 399999988885 334455689999999999999999965
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=108.85 Aligned_cols=102 Identities=25% Similarity=0.235 Sum_probs=82.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
....+++.++ ..++.+|||||||+|.++..+++..+ .+ ++++|. +.+++.+++. .++++..+|+...++.
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 155 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence 4556667664 77888999999999999999999987 77 999998 8888777653 4699999998555443
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++..+++++.+ ++.+.|+|||++++.-.
T Consensus 156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 399999999998753 67899999999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-13 Score=110.74 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-C----CCc-cEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-I----PAA-DAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~----p~~-D~v~ 161 (254)
+.+..+|||||||+|..+..++...|+.+ ++++|+ +.+++.+++. .+|+++.+|+.+. . ++. |+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 34678999999999999999999888888 999999 8888777642 4699999998653 2 233 9999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+..+ .+...+++.++++|+|||++++.+..... ...+++.+.++++
T Consensus 147 ~~~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~----------------------------~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 147 ARAV------ARLSVLSELCLPLVKKNGLFVALKAASAE----------------------------EELNAGKKAITTL 192 (240)
T ss_dssp EECC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH----------------------------HHHHHHHHHHHHT
T ss_pred Eecc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch----------------------------HHHHHHHHHHHHc
Confidence 8763 22468999999999999999886321100 0124567788899
Q ss_pred CCCeeeEEE
Q 025363 242 GFPHLRLYR 250 (254)
Q Consensus 242 Gf~~~~~~~ 250 (254)
||++.++..
T Consensus 193 g~~~~~~~~ 201 (240)
T 1xdz_A 193 GGELENIHS 201 (240)
T ss_dssp TEEEEEEEE
T ss_pred CCeEeEEEE
Confidence 998877654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=106.27 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHhhcCCCC-CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhh-CCCCCCcEEEe-CCCCC----CCCC
Q 025363 85 MTSVLEGYNGFK-GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAE-APSIPGVTHIG-GDMFK----SIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~-~~~~~~i~~~~-~d~~~----~~p~ 156 (254)
...+++.+. .. ++.+|||||||||.++..+++. +..+ ++++|. +.|++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~ 149 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE 149 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC
Confidence 445666664 43 5679999999999999998887 3446 999999 888876 33335554332 23311 1343
Q ss_pred --ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChh-hhhhcccchHhhhhccccCceecCHHH
Q 025363 157 --ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
.|++++..++|.+ ..+|.+++++|+|||++++.- .|+...... ........|. ....++.++
T Consensus 150 ~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~--------~~~~~~~~~ 214 (291)
T 3hp7_A 150 GLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRES--------SIHEKVLET 214 (291)
T ss_dssp CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCH--------HHHHHHHHH
T ss_pred CCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCH--------HHHHHHHHH
Confidence 3999998888765 578999999999999999862 111110000 0000000000 012246789
Q ss_pred HHHHHHhCCCCeeeEEE
Q 025363 234 FKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~ 250 (254)
+.++++++||++..+..
T Consensus 215 v~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 215 VTAFAVDYGFSVKGLDF 231 (291)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEE
Confidence 99999999999877654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-13 Score=107.02 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=91.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHH----HhhCCCCCCcEEEeCCCCCC--C---CCc-cEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEV----VAEAPSIPGVTHIGGDMFKS--I---PAA-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~----~~~~~~~~~i~~~~~d~~~~--~---p~~-D~v~~ 162 (254)
..++.+|||+|||+|.++..+++.+ |..+ ++++|+ +.+ ++.++...+++++.+|+.+. + +.. |+|++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 6678899999999999999999997 6678 999998 654 44444447899999999874 2 223 99998
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
... ..+....++++++++|||||++++.-........ ... ..+-..+ .++|+++|
T Consensus 154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~----------~~~~~~~-~~~l~~~G 208 (233)
T 2ipx_A 154 DVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDST----------ASA----------EAVFASE-VKKMQQEN 208 (233)
T ss_dssp CCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSS----------SCH----------HHHHHHH-HHTTGGGT
T ss_pred cCC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccC----------CCH----------HHHHHHH-HHHHHHCC
Confidence 544 2344567799999999999999983211000000 000 0011123 58899999
Q ss_pred CCeeeEEEcc
Q 025363 243 FPHLRLYRVL 252 (254)
Q Consensus 243 f~~~~~~~~~ 252 (254)
|++++...+.
T Consensus 209 f~~~~~~~~~ 218 (233)
T 2ipx_A 209 MKPQEQLTLE 218 (233)
T ss_dssp EEEEEEEECT
T ss_pred CceEEEEecC
Confidence 9998876653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-13 Score=111.56 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=92.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-c-cE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-A-DA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~-D~ 159 (254)
.+..+|||||||+|.++..+++..+..+ ++++|+ +.+++.+++ .++++++.+|+.+.. +. . |+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 4568999999999999999998877777 999999 888776653 268999999987652 33 3 99
Q ss_pred EEeccccccCCHHHH--HHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 160 IFMKWVLTTWTDDEC--KLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 160 v~~~~vlh~~~~~~~--~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|++....+.++.... .+++++++++|||||+|++.... . + .. .....++.+.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~---~----~-------~~------------~~~~~~~~~~ 226 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES---I----W-------LD------------LELIEKMSRF 226 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC---T----T-------TC------------HHHHHHHHHH
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC---c----c-------cc------------hHHHHHHHHH
Confidence 999776665443332 58999999999999999986321 0 0 00 0235678889
Q ss_pred HHhCCCCeeeEEEc
Q 025363 238 GFFAGFPHLRLYRV 251 (254)
Q Consensus 238 l~~aGf~~~~~~~~ 251 (254)
++++||..++....
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998876643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-14 Score=114.57 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=94.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCC----CCC----C-ccE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFK----SIP----A-ADA 159 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~----~~p----~-~D~ 159 (254)
+..+|||+|||+|.++..+++++|+.+ ++++|+ +.+++.++++ ++++++.+|+.+ .++ . .|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 567999999999999999999988888 999999 8888877653 469999999643 344 2 399
Q ss_pred EEeccccccCCH-------------HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc
Q 025363 160 IFMKWVLTTWTD-------------DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 226 (254)
Q Consensus 160 v~~~~vlh~~~~-------------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (254)
|++.-.+|.... +....++.+++++|||||.+.+.+...... ......... .. ...+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g~--~~--~~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLRW--YS--CMLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBSC--EE--EEES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceEE--EE--ECCC
Confidence 999866554320 112356788999999999998876543211 000000000 00 1112
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
...+.+++.++++++||+.+++..+
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3345588999999999998887654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-13 Score=109.49 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C--CcEEEeCCCCCCCCC--ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P--GVTHIGGDMFKSIPA--ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~--~i~~~~~d~~~~~p~--~D~v~~~~vlh 167 (254)
.++.+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ . .+++..+|+.+.++. .|+|++....|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 4578999999999999999888755 7 999999 8888777653 1 289999998765433 39999865443
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
....+++++++.|+|||++++.+... .+.+++.++++++||++++
T Consensus 196 -----~~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 -----LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEE
T ss_pred -----HHHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 35689999999999999999965421 1356788999999999988
Q ss_pred EEEc
Q 025363 248 LYRV 251 (254)
Q Consensus 248 ~~~~ 251 (254)
+...
T Consensus 241 ~~~~ 244 (254)
T 2nxc_A 241 EAAE 244 (254)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=110.36 Aligned_cols=112 Identities=14% Similarity=0.260 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC-------CC--------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA-------PS--------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~-------~~--------~~~i~~~~~ 148 (254)
...+++.++ ..++.+|||||||+|.++..+++.++..+ ++++|+ +.+++.+ +. ..+|+++.+
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 455667774 77889999999999999999999887777 999998 7766655 32 257999887
Q ss_pred CCCCC---C----CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 149 DMFKS---I----PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 149 d~~~~---~----p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
|.+.. + ...|+|++.++++. ++....|+++.+.|||||+|++.+...+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred CccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 65432 2 12499998877742 456688999999999999999998776654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-13 Score=104.22 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=81.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--C-CCc-cEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--I-PAA-DAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~-p~~-D~v~ 161 (254)
.+++.+|||+|||+|..+..+++.+ |..+ ++++|+ +.+++.+++. ++++++.+|+.+. . ++. |+|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 5667899999999999999999986 5667 999999 8888877653 5799999998654 2 233 9999
Q ss_pred ecccc-------ccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 162 MKWVL-------TTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 162 ~~~vl-------h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+...+ .....++..++++++.++|||||++++.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 87654 11123456679999999999999999987543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=102.44 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=81.1
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--- 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--- 155 (254)
.+++.+ ...++.+|||+|||+|..+..+++.. .+ ++++|. +.+++.+++. +++.+..+|+.+.++
T Consensus 24 ~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 24 LIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHH-CCCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhc-CCCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 344445 36778899999999999999999887 56 999999 8887776542 579999999876433
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..|+|++..+++++ ..++++++++|+|||++++...
T Consensus 100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence 24999998887653 6889999999999999998653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-13 Score=111.81 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----C--------CcEEEeCCCCCC---------C
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----P--------GVTHIGGDMFKS---------I 154 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~--------~i~~~~~d~~~~---------~ 154 (254)
++.+|||||||+|..+..+++.. ..+ ++++|+ +.+++.|++. . +++|...|+..+ .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 46899999999998777666542 346 999999 9999988754 1 256878877322 2
Q ss_pred CC-c-cEEEecccccc-CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 155 PA-A-DAIFMKWVLTT-WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 155 p~-~-D~v~~~~vlh~-~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+. . |+|++..++|+ ++.++...+|++++++|||||++++..+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33 3 99999999986 4545567999999999999999998765
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=116.64 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=86.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
..+.+++.++ ..++.+|||||||+|.++..+++ .+..+ ++++|+.++++.+++. ++|+++.+|+.+. ++
T Consensus 146 ~~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~ 222 (480)
T 3b3j_A 146 YQRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP 222 (480)
T ss_dssp HHHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred HHHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC
Confidence 4555666663 55678999999999999998887 46667 9999995476665532 6799999999884 55
Q ss_pred Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+. |+|++..+++++.+++....+.++++.|||||++++
T Consensus 223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 54 999998888888777778888899999999999985
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=106.97 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=79.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CCC---ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA---ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p~---~D~ 159 (254)
..+..+|||||||+|..+..+++.+| +.+ ++++|+ +.+++.+++. ++|+++.+|+.+. .+. .|+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 34578999999999999999999998 778 999999 8888777643 4899999998664 222 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|++... ......+++++.++|||||+|++.+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 140 IFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 998543 34456799999999999999998776543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=105.35 Aligned_cols=125 Identities=11% Similarity=0.018 Sum_probs=91.8
Q ss_pred CCC-CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---C-Cc-cE
Q 025363 94 GFK-GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---P-AA-DA 159 (254)
Q Consensus 94 ~~~-~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p-~~-D~ 159 (254)
... ++.+|||+|||+|..+..++++.+. + ++++|+ +.+++.++++ ++++++.+|+.+.. + +. |+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~ 122 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADI 122 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccE
Confidence 356 7889999999999999999998765 7 999999 8888777653 47999999998762 2 33 99
Q ss_pred EEeccccccC------------------CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc
Q 025363 160 IFMKWVLTTW------------------TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 221 (254)
Q Consensus 160 v~~~~vlh~~------------------~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
|++.-.++.. .......+++.+.++|||||++++.-. .
T Consensus 123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~--------------------- 178 (259)
T 3lpm_A 123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P--------------------- 178 (259)
T ss_dssp EEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T---------------------
T ss_pred EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H---------------------
Confidence 9996443321 113456899999999999999998421 1
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
....++.+.+++.||...++..+
T Consensus 179 -------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHHHCCCceEEEEEe
Confidence 12345667777788877766654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-12 Score=101.00 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=93.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---~D~v~~~ 163 (254)
.+++.+|+|||||+|..+..+++..|..+ ++++|. +..++.++++ ++|++..+|.++.++. .|+|++.
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEc
Confidence 34678999999999999999999988888 999999 8888887754 5799999999988552 4988875
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
.+ ..+-...+|..+.+.|+|+|+|++.-. .....++++|.+.||
T Consensus 92 G~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 92 GM----GGRLIARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp EE----CHHHHHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CC----ChHHHHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHCCC
Confidence 54 234467899999999999999887321 123456788999999
Q ss_pred CeeeEE
Q 025363 244 PHLRLY 249 (254)
Q Consensus 244 ~~~~~~ 249 (254)
.+++..
T Consensus 136 ~i~~e~ 141 (225)
T 3kr9_A 136 QIVAES 141 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-13 Score=106.20 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=75.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCCc--cEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPAA--DAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~~--D~v~~~ 163 (254)
+..+|||||||+|.++..+++.+|+.. ++++|. +.+++.++++ .+++++.+|+.+. ++.. |.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 467999999999999999999999999 999999 8888776542 5799999998763 4443 888876
Q ss_pred cccccCCH-HHH------HHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWTD-DEC------KLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~~-~~~------~~il~~~~~~L~pgG~l~i~d 195 (254)
.... |+. ... ..++++++++|||||+|++..
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 4332 221 111 258999999999999998864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=103.72 Aligned_cols=145 Identities=18% Similarity=0.141 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcE--------EEe-CCCCCCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVT--------HIG-GDMFKSI 154 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~--------~~~-~d~~~~~ 154 (254)
..+++.++...++.+|||||||+|.++..+++.. ..+ ++++|+ +.|++.+++. +++. +.. .|+....
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~-V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKL-VYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSE-EEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCE-EEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 3455555422346799999999999999999883 236 999999 8887764432 3332 222 2222111
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhh--hcccchHhhhhccccCceecCHH
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTR--ALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
+ |.+.+..++..+ ..+|++++++|||||++++.- .+.... .+... .....+. .....+.+
T Consensus 104 ~--d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~-~~~~~~~~G~~~d~--------~~~~~~~~ 165 (232)
T 3opn_A 104 P--SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEA-GREQVGKNGIIRDP--------KVHQMTIE 165 (232)
T ss_dssp C--SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHS-CHHHHC-CCCCCCH--------HHHHHHHH
T ss_pred C--CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Cccccc-CHHHhCcCCeecCc--------chhHHHHH
Confidence 2 444444444433 578999999999999999852 110000 00000 0000000 01124788
Q ss_pred HHHHHHHhCCCCeeeEEE
Q 025363 233 EFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~~~ 250 (254)
++.++++++||++..+..
T Consensus 166 ~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEE
Confidence 999999999999887754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=98.41 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=78.9
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC--
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-- 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-- 156 (254)
+.+++.++ ..++.+|||+|||+|.++..+++ +..+ ++++|. +.+++.+++. ++++++.+|+.+.++.
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE 100 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCC
Confidence 34455553 66778999999999999999998 6677 999999 8888777653 5799999999876553
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++..+ + ....++++++++ |||++++.+.
T Consensus 101 ~D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 101 FNKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp CSEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEES
T ss_pred CcEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEec
Confidence 499999887 2 235789999998 9999999663
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-13 Score=109.41 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=77.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-----C-ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-----A-ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-----~-~D~v~ 161 (254)
..++.+|||||||+|..+..++..+|+.+ ++++|. +.+++.++++ .+|+++.+|+.+..+ + .|+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 35678999999999999999999999999 999999 8888777653 469999999866421 3 39999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.+- ....+++.+.+.|||||++++...
T Consensus 157 s~a~~------~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 157 ARAVA------PLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EESSC------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ECCcC------CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87542 235789999999999999998653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=105.19 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=88.2
Q ss_pred HHHHHhcCCch----hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC------
Q 025363 73 MRKAMSGVSVP----FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI------ 140 (254)
Q Consensus 73 ~~~~m~~~~~~----~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~------ 140 (254)
|...+...... ....+++.++ ..++.+|||+|||+|.++..+++. .|..+ ++++|. +.+++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~g 146 (258)
T 2pwy_A 69 YLLHMKRSATPTYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAERNVRAFWQ 146 (258)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCC
T ss_pred HhhcCccccccccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcC
Confidence 44445443332 2345777774 788899999999999999999998 56778 999998 8887766542
Q ss_pred -CCcEEEeCCCCCC-CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 141 -PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 141 -~~i~~~~~d~~~~-~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+++++..+|+.+. ++. .|+|++. +++ ...++++++++|+|||++++...
T Consensus 147 ~~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 147 VENVRFHLGKLEEAELEEAAYDGVALD-----LME--PWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCCEEEEESCGGGCCCCTTCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCEEEEECchhhcCCCCCCcCEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeC
Confidence 5799999999876 654 3999972 332 24789999999999999999764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=103.11 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=84.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH--cCCCCeEEEeec-hHHHhhCCCC---C-------C----------
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVAEAPSI---P-------G---------- 142 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~--~~~~~~~~~~D~-~~~~~~~~~~---~-------~---------- 142 (254)
+.+++.+. ..+..+|||+|||+|.++..+++. .+..+ ++++|+ +.+++.++.+ . +
T Consensus 41 ~~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (250)
T 1o9g_A 41 QRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER 118 (250)
T ss_dssp HHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence 33444442 335679999999999999999998 67777 999999 8888877632 2 2
Q ss_pred ---------------cE-------------EEeCCCCCCC------CC--ccEEEeccccccCC-------HHHHHHHHH
Q 025363 143 ---------------VT-------------HIGGDMFKSI------PA--ADAIFMKWVLTTWT-------DDECKLIME 179 (254)
Q Consensus 143 ---------------i~-------------~~~~d~~~~~------p~--~D~v~~~~vlh~~~-------~~~~~~il~ 179 (254)
++ |+.+|+++.. +. .|+|++...++... .+....+++
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~ 198 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 198 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence 67 9999998864 43 39999977665433 256779999
Q ss_pred HHHHhCCCCCEEEEEccc
Q 025363 180 NCYKALPAGGKLIACEPV 197 (254)
Q Consensus 180 ~~~~~L~pgG~l~i~d~~ 197 (254)
+++++|+|||+|++.+..
T Consensus 199 ~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 199 SLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHSCTTCEEEEEESS
T ss_pred HHHHhcCCCcEEEEeCcc
Confidence 999999999999986544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-12 Score=106.93 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~ 172 (254)
+..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++...-.++.+|+.+. ++. . |+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 6789999999999999999987 457 999999 88888776542223888998765 444 3 999998876666333
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
...+|++++++|||||++++....
T Consensus 131 -~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 -KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 679999999999999999987654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=96.05 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=82.2
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC---------CCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~---------~p~ 156 (254)
.+++.+....++.+|||+|||+|.++..+++.+ ++.+ ++++|..++++. .++++..+|+.+. ++.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECcccccc----CcEEEEEcccccchhhhhhhccCCC
Confidence 344444335677899999999999999999995 6678 999999434322 6899999999875 343
Q ss_pred --ccEEEeccccccCCHHH---------HHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 --ADAIFMKWVLTTWTDDE---------CKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~---------~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++...+|...... ...+++++.++|+|||++++.....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 39999988887654321 1588999999999999999876543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=101.29 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC-c-cEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA-A-DAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~-~-D~v~~~~ 164 (254)
++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ .++.++.+|+.+. ++. . |.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 467899999999999999999999999 999999 8888776542 5799999998763 343 2 8887654
Q ss_pred ccccCCHH-------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTDD-------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
... |... ....+|++++++|||||+|++..
T Consensus 117 ~~p-~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDP-WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCC-CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCC-CcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 322 2110 02578999999999999998864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-12 Score=99.15 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC--ccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA--ADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~--~D~v~~~~ 164 (254)
++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ +++.++.+|+.+. ++. .|+|++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 467899999999999999999999988 999999 8888877653 5899999999863 333 39999876
Q ss_pred ccccCCHH------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTDD------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
........ ....++++++++|+|||.|++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 54311100 12479999999999999998854
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=100.76 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=82.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~ 156 (254)
...+++.++ ..++.+|||||||+|..+..+++. ..+ ++++|+ +.+++.++++ ++++++.+|+.+..+ .
T Consensus 66 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 66 VARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 445566664 778899999999999999999998 456 999999 8888777643 579999999988643 2
Q ss_pred --ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 157 --ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.|+|++..++|++++ ++++.|||||+|++.-..
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 399999999998864 578999999999986543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=95.91 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=77.8
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC--CCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCC----------
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR--FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSI---------- 154 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~---------- 154 (254)
++.+.+..+.++.+|||+|||+|.++..++++++ +.+ ++++|+.++. ..++++++.+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCCC----CCTTCEEEECCTTTTSSCCC------
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCccC----CCCCceEEEccccchhhhhhcccccc
Confidence 3455553356778999999999999999999988 678 9999994431 2367999999997653
Q ss_pred ----------------CC-c-cEEEeccccccCC----HHH-----HHHHHHHHHHhCCCCCEEEEEc
Q 025363 155 ----------------PA-A-DAIFMKWVLTTWT----DDE-----CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 155 ----------------p~-~-D~v~~~~vlh~~~----~~~-----~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. . |+|++...+|... +.. ..+++++++++|||||++++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 33 3 9999987776421 111 1358999999999999998844
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-12 Score=99.00 Aligned_cols=118 Identities=15% Similarity=0.032 Sum_probs=95.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-C--ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-A--ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-~--~D~v~~~ 163 (254)
.+++.+|+|||||+|.++..+++..|..+ ++++|+ +.+++.++++ ++|++..+|.++.++ . .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 45678999999999999999999988778 999999 8888887754 579999999998844 2 4998876
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
.+. .+-...+|....+.|+++|+|++.-. ...++++++|.+.||
T Consensus 98 GmG----g~lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 98 GMG----GRLIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EEC----HHHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CCc----hHHHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHHHHHHHCCC
Confidence 543 35577899999999999999887321 124567889999999
Q ss_pred CeeeEE
Q 025363 244 PHLRLY 249 (254)
Q Consensus 244 ~~~~~~ 249 (254)
.+++..
T Consensus 142 ~i~~E~ 147 (230)
T 3lec_A 142 EIVAED 147 (230)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=107.18 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
...++..++ ..++.+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+.++
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 178 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 178 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc
Confidence 445677774 788899999999999999999999 57788 999998 8888776643 479999999987755
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. .|+|++. .+ +...+++++.++|+|||+|++.+.
T Consensus 179 ~~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 179 EKDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CCSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred CCccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 3999972 22 224789999999999999999763
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=98.50 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-C---CC-c-cEEEecc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-I---PA-A-DAIFMKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~---p~-~-D~v~~~~ 164 (254)
..+++.+|||||||. . . +|. +.|++.+++. .+++++.+|+.+. . +. . |+|++..
T Consensus 9 g~~~g~~vL~~~~g~--------------v-~--vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS--------------S-P--VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TCCTTSEEEEEECTT--------------S-C--HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCCEEEEecCCc--------------e-e--eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 467889999999985 1 2 677 7788777653 3699999999765 3 44 3 9999999
Q ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 165 VLTTW-TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 165 vlh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
++|++ ++. .++|++++++|||||+|++.+........ ....++.++|.++|+++||
T Consensus 72 ~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 72 VPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVDN---------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp STTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSCS---------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhhhcccCH--HHHHHHHHHHCCCCEEEEEEccccccccc---------------------ccccCCHHHHHHHHHHCCC
Confidence 99998 543 68999999999999999996554321100 0122578999999999999
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=100.56 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p- 155 (254)
...+++.+ ...++.+|||||||+|..+..+++.. |+.+ ++++|. +.+++.+++. +++++..+|+....+
T Consensus 66 ~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 66 VGMMCELL-DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHT-TCCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHhh-CCCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 34556666 36778899999999999999999988 5567 999999 8888777653 569999999866644
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. .|+|++..++|+++ ++++++|||||++++...
T Consensus 144 ~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 2 39999999999875 378999999999998754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=98.34 Aligned_cols=100 Identities=10% Similarity=-0.005 Sum_probs=80.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---C-CC-ccEEEec
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---I-PA-ADAIFMK 163 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~-p~-~D~v~~~ 163 (254)
.++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+. . ++ .|+|++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 45789999999999999988775 4456 999999 8888887754 4799999998775 2 23 3999998
Q ss_pred cccccCCHHHHHHHHHHHHH--hCCCCCEEEEEcccc
Q 025363 164 WVLTTWTDDECKLIMENCYK--ALPAGGKLIACEPVL 198 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~d~~~ 198 (254)
..+|. ..++..++++++.+ +|+|||++++.....
T Consensus 121 ~p~~~-~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 121 PPYNV-DSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCTTS-CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCc-chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87764 34677899999999 999999999976544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=102.98 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CC-----C-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IP-----A-A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p-----~-~ 157 (254)
.+..+|||||||+|..+..+++.++ +.+ ++.+|+ +.+++.++++ ++|+++.+|+.+. .+ + .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3578999999999999999999875 677 999999 8888887653 4799999997542 22 2 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++....+++ ....++++.+ +.|||||+|++.+...+
T Consensus 136 D~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 136 DMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp SEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred EEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence 999998877765 3345678888 99999999998776643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=100.18 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=75.8
Q ss_pred CCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-----CCC--ccEEEecc
Q 025363 98 VKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-----IPA--ADAIFMKW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-----~p~--~D~v~~~~ 164 (254)
..+|||||||+|..+..+++. .|+.+ ++++|+ +.+++.++.. ++|+++.+|+.+. .+. .|+|++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 579999999999999999998 67888 999999 8888777542 6899999999873 233 39988755
Q ss_pred ccccCCHHHHHHHHHHHHH-hCCCCCEEEEEcc
Q 025363 165 VLTTWTDDECKLIMENCYK-ALPAGGKLIACEP 196 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~-~L~pgG~l~i~d~ 196 (254)
. |. +...+|+++.+ .|||||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 34678999997 9999999999764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-12 Score=109.38 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~ 157 (254)
+.+.+.+. ..++.+|||||||+|.++..++++ +..+ ++++|..++++.+++. ++|+++.+|+.+. .++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 44555553 556789999999999999998886 4457 9999984466555432 6799999999875 5554
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|+|++..+++++..+.....+.++++.|||||++++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999998888887777778889999999999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=101.53 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=75.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-c-cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-A-DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~-D~v~~~~vlh 167 (254)
++.+|||+|||+|..+..+++.+|+.+ ++++|. +.+++.++.. .++++..+|+.+..+. . |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~ 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C
Confidence 467999999999999999999999888 999999 8887776542 4599999999876543 3 99997543 3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ ...++++++++|+|||++++..
T Consensus 143 ~-----~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 S-----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp S-----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred C-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3589999999999999999864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=103.71 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=80.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC----Cc-cEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP----AA-DAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p----~~-D~v~ 161 (254)
..+..+|||||||+|..+..+++..|+.+ ++++|+ +.+++.+++. ++|+++.+|+.+..+ .. |+|+
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 34578999999999999999999888888 999999 8888877653 489999999987644 33 9999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+.... .....+++++.+.|||||+|++.+....
T Consensus 148 ~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 148 IDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp EETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 75433 3346799999999999999988665543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=103.47 Aligned_cols=121 Identities=15% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
.+++.+|||+|||+|.++..+++..+. + ++++|+ +.+++.++++ ++++++.+|+.+..+. .|+|++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~ 200 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECC
Confidence 346789999999999999999999766 7 999999 8888877643 4699999999887443 39999854
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
... ...+++++.++|+|||++++.+...... ......+++.+.++++||+
T Consensus 201 p~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~------------------------~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKL------------------------MPREPFETFKRITKEYGYD 250 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGG------------------------TTTTTHHHHHHHHHHTTCE
T ss_pred chh------HHHHHHHHHHHCCCCeEEEEEEeecccc------------------------ccccHHHHHHHHHHHcCCe
Confidence 422 2578999999999999999987643110 0012456778899999998
Q ss_pred eee
Q 025363 245 HLR 247 (254)
Q Consensus 245 ~~~ 247 (254)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 655
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=98.19 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=93.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-C--ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-A--ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-~--~D~v~~~ 163 (254)
.+++.+|+|||||+|.+++.+++..|..+ ++++|+ +.+++.++++ ++|++..+|.++.++ . .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 35678999999999999999999988778 999999 8888887754 579999999998854 2 4998875
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 243 (254)
.+ ..+-...+|.+..+.|+++++|++.-. .....++++|.+.||
T Consensus 98 gm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 98 GM----GGTLIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp EE----CHHHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHHTE
T ss_pred CC----chHHHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHHHHHHHCCC
Confidence 44 335577899999999999999888431 124467788999999
Q ss_pred CeeeEE
Q 025363 244 PHLRLY 249 (254)
Q Consensus 244 ~~~~~~ 249 (254)
.+++..
T Consensus 142 ~i~~E~ 147 (244)
T 3gnl_A 142 LITSEA 147 (244)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=101.46 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=79.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-------C-c
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-------A-A 157 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-------~-~ 157 (254)
..+..+|||||||+|..+..+++.+| +.+ ++++|+ +.+++.++++ ++++++.+|+.+..+ . .
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 34578999999999999999999998 678 999999 8888776542 479999999876422 2 4
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++.... .....+++++.++|+|||.|++.+...+
T Consensus 135 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 135 DFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp SEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred CEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 999976542 3446899999999999999888776554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-12 Score=100.06 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC------------CCCCcEEEeCCCCCC----CCCc-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP------------SIPGVTHIGGDMFKS----IPAA- 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~------------~~~~i~~~~~d~~~~----~p~~- 157 (254)
.+..+|||||||+|.++..+++.+|+.. ++++|+ +.+++.++ ...+|.++.+|+.+. ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4567899999999999999999999988 999999 88876442 226799999999873 3333
Q ss_pred -cEEEeccccccCCHH---H----HHHHHHHHHHhCCCCCEEEEEc
Q 025363 158 -DAIFMKWVLTTWTDD---E----CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~---~----~~~il~~~~~~L~pgG~l~i~d 195 (254)
|.|++...-. |... . ...+|++++++|||||+|++..
T Consensus 124 ~D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 8887643321 1110 0 1379999999999999998863
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-12 Score=99.05 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCCCC--C-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKSIP--A- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~~p--~- 156 (254)
...+++.+. ..++.+|||||||+|.++..+++.. .+ ++++|. +.+++.+++. .+++++.+|+.+..+ .
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 445666663 6778899999999999999999986 56 999998 8888777653 279999999987533 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++..++|++.+ ++.++|+|||++++...
T Consensus 135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence 399999999998853 58899999999999864
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=102.08 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=79.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-----ccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-----ADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-----~D~v~~~~ 164 (254)
++.+|||+| |+|.++..+++..++.+ ++++|+ +.+++.++++ .+|+++.+|+.+.+|. .|+|++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 568999999 99999999999888778 999999 8998887754 3799999999885442 39999987
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.++.. ....++++++++|||||++++.+..
T Consensus 250 p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 77643 3578999999999999976555543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=103.69 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p- 155 (254)
...+++.++ ..++.+|||||||+|.++..+++..+ +.+ ++++|+ +++++.++++ ++++++.+|+.+..+
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 445666664 77889999999999999999999987 477 999999 8888777643 469999999987533
Q ss_pred -C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 -A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 -~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. .|+|++..++|++. +++.+.|||||++++....
T Consensus 142 ~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp GCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 2 39999999999875 4678899999999997543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-12 Score=105.86 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=78.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCc------ccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CC-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGS------AGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP- 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G------~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p- 155 (254)
+.++..+. .+..+||||||| +|..+..++++ +|+.+ ++++|+ +.+.. ..++|+|+.+|+.+. +.
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSHV---DELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGGG---CBTTEEEEECCTTCHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHhh---cCCCcEEEEecccccchhh
Confidence 34444442 346899999999 77777777766 58888 999999 77632 337899999999874 33
Q ss_pred ------C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 ------A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 ------~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+ .|+|++. ..|++ .+..+.|++++++|||||++++.|..
T Consensus 281 ~l~~~d~sFDlVisd-gsH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 281 RIARRYGPFDIVIDD-GSHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHCCEEEEEEC-SCCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhcccCCccEEEEC-Ccccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 3 3999986 45655 45678999999999999999998876
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=102.37 Aligned_cols=125 Identities=15% Similarity=0.095 Sum_probs=87.6
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCc
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGV 143 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i 143 (254)
.|..+..........-+...++ ..++.+|||+|||+|..+..+++..+ ..+ ++++|+ +.+++.++++ .++
T Consensus 94 ~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~~~v 171 (315)
T 1ixk_A 94 EFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNV 171 (315)
T ss_dssp HHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSE
T ss_pred hHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCeE
Confidence 3444333333333333445553 67788999999999999999999875 467 999999 8888776653 479
Q ss_pred EEEeCCCCCC--CCC-ccEEEec------ccccc-------CCHHHH-------HHHHHHHHHhCCCCCEEEEEcccc
Q 025363 144 THIGGDMFKS--IPA-ADAIFMK------WVLTT-------WTDDEC-------KLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 144 ~~~~~d~~~~--~p~-~D~v~~~------~vlh~-------~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.++.+|+.+. .+. .|+|++. .+++. |+.++. .++|+++.+.|||||+|++.....
T Consensus 172 ~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 172 ILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9999998765 233 3999973 23332 332221 589999999999999999976544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=101.19 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC--------CC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS--------IP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~--------~p 155 (254)
..+..+|||+|||+|..+..+++++|+.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 55678999999999999999999999888 999999 8777665432 2699999999876 22
Q ss_pred C--ccEEEecccccc----------------CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A--ADAIFMKWVLTT----------------WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~--~D~v~~~~vlh~----------------~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++.-.++. ........+++.+.++|||||++++.-
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 399999633321 112235689999999999999998853
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-12 Score=101.56 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---C--CC-ccEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---I--PA-ADAI 160 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~--p~-~D~v 160 (254)
..+..+|||||||+|..+..+++.+|+.+ ++++|. +.+++.+++. ++++++.+|+.+. . +. .|+|
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 34577999999999999999999998888 999999 8888777643 4799999999874 2 23 3999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++....+ ....+++++.++|+|||+|++.+....
T Consensus 131 ~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 131 FIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp EEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred EECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 9877654 346889999999999999999876543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-12 Score=102.18 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A-A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~-~ 157 (254)
.+..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.+++. ++++++.+|+.+..+ . .
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 3467999999999999999999988 677 999999 8888776643 569999999866421 3 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++... ......+++++.++|||||+|++.+...+
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99996543 23456899999999999999999877654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-12 Score=95.32 Aligned_cols=110 Identities=8% Similarity=0.044 Sum_probs=81.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--- 153 (254)
.+.+++.+....+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence 3344444422456789999999999999999987 5567 999999 8888877643 3699999999774
Q ss_pred CCC-ccEEEeccccccCCHHHHHHHHHHHH--HhCCCCCEEEEEccccC
Q 025363 154 IPA-ADAIFMKWVLTTWTDDECKLIMENCY--KALPAGGKLIACEPVLP 199 (254)
Q Consensus 154 ~p~-~D~v~~~~vlh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~~~~ 199 (254)
.+. .|+|++...++. ....++++.+. ++|+|||++++......
T Consensus 97 ~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 97 LTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp BCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 233 399999776642 34456777776 99999999998765443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=103.12 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=78.2
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CC-C
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IP-A 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~ 156 (254)
+.+.+... ..++.+|||||||+|.++..++++ +..+ ++++|..++++.+++. ++|+++.+|+.+. +| +
T Consensus 54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 44555443 566889999999999999999887 3446 9999994477766542 6899999999875 55 3
Q ss_pred c-cEEEecc---ccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 157 A-DAIFMKW---VLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 157 ~-D~v~~~~---vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
. |+|++.. .+++ ......+|++++++|||||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 3 9999866 3433 2456789999999999999987
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=104.94 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=80.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC-C-C-ccEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI-P-A-ADAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~-p-~-~D~v~~~~vlh 167 (254)
++.+|||+|||+|.++..+++. +.+ ++++|. +.+++.++++ .+++++.+|+.+.. + + .|+|++...+|
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 5679999999999999999988 457 999999 8888877654 25899999998874 3 2 39999999988
Q ss_pred c---CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 T---WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~---~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ ...+...++++++++.|||||++++..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 6 334677899999999999999999864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=100.37 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=75.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-Cc---cEEEec-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-AA---DAIFMK- 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-~~---D~v~~~- 163 (254)
+..+|||+|||+|..+..+++. |+.+ ++++|+ +.+++.++++ ++++|+.+|+++..+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 4679999999999999999999 8889 999999 8888877653 369999999998643 46 999985
Q ss_pred -----------cccccCCHH------HHHHHHHHHH-HhCCCCCEEEE
Q 025363 164 -----------WVLTTWTDD------ECKLIMENCY-KALPAGGKLIA 193 (254)
Q Consensus 164 -----------~vlh~~~~~------~~~~il~~~~-~~L~pgG~l~i 193 (254)
.+. +.+.. +...+++++. +.|+|||+|++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 22211 1227899999 99999999987
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=105.25 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=75.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCC-c-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPA-A-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~-~-D~v~~~~ 164 (254)
..++.+|||||||+|.++..++++ +..+ ++++|..++++.+++. ++|+++.+|+.+. +|. . |+|++..
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 345789999999999999999988 4457 9999995577666542 5699999999886 563 3 9999876
Q ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 VLTTW-TDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 vlh~~-~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+.+.+ .......+++++.++|||||+++.
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 54433 224567899999999999999874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.21 E-value=9.3e-12 Score=100.40 Aligned_cols=98 Identities=11% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC--------------CCCcEEEeCCCCCCCC----
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS--------------IPGVTHIGGDMFKSIP---- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~--------------~~~i~~~~~d~~~~~p---- 155 (254)
.+++.+|||||||+|.++..+++.+|+.. ++++|+ +.+++.+++ ..++.++.+|+++.++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 34678999999999999999999999888 999998 777765432 2579999999987432
Q ss_pred Cc--cEEEeccccccCCHHH-------HHHHHHHHHHhCCCCCEEEEE
Q 025363 156 AA--DAIFMKWVLTTWTDDE-------CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 156 ~~--D~v~~~~vlh~~~~~~-------~~~il~~~~~~L~pgG~l~i~ 194 (254)
.. |.|++...- -|.... ...+++++.++|+|||+|++.
T Consensus 126 ~~~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 126 KGQLSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TTCEEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 22 666642110 111000 037999999999999999985
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=99.93 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-cEEEeccccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~ 170 (254)
.++.+|||||||+|.++..+++..|+.+ ++++|+ +.+++.+++. +++.+..+|+.+. ++. . |+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~--- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC---
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh---
Confidence 4678999999999999999999988888 999999 8888877654 6799999998764 443 3 9999866532
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.+++++++|||||++++.++..
T Consensus 160 ------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 ------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ------CHHHHHHHEEEEEEEEEEEECT
T ss_pred ------hHHHHHHhcCCCcEEEEEEcCH
Confidence 4789999999999999987643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-12 Score=102.62 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC--------CC-cc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI--------PA-AD 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~--------p~-~D 158 (254)
+..+|||||||+|..+..+++.+| +.+ ++.+|+ +.+++.++++ ++|+++.+|+.+.+ ++ .|
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 467999999999999999999986 677 999999 8777666543 58999999997642 23 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+|++... ......+++++.++|||||.|++.+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9988654 234567899999999999999998776543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=106.02 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCCc-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~- 157 (254)
.+.+.. ...++.+|||||||+|.++..++++. ..+ ++++|...+++.+++. ++|+++.+|+.+. +++.
T Consensus 54 ~i~~~~-~~~~~~~VLDlGcGtG~ls~~la~~g-~~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 54 AVFQNK-HHFEGKTVLDVGTGSGILAIWSAQAG-ARK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHTTT-TTTTTCEEEEESCTTTHHHHHHHHTT-CSE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHhcc-ccCCCCEEEEeccCcCHHHHHHHhcC-CCE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 344444 35678899999999999999999883 236 9999987666655432 5699999999876 5544
Q ss_pred cEEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|++..+.|.... .....+++++.+.|||||.+++.+..
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 99999766665432 34678999999999999999876544
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-12 Score=103.29 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC-C-ccEEEeccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-A-ADAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p-~-~D~v~~~~v 165 (254)
..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ +|++++.+|..+. .+ + .|+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 35999999999999999999999998 999999 8888877642 6899999998764 23 3 399998644
Q ss_pred cccCCHHH--HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 166 LTTWTDDE--CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 166 lh~~~~~~--~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+...... ..+++++++++|+|||.|++.-.
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 43322111 25899999999999999988654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=94.66 Aligned_cols=100 Identities=7% Similarity=-0.040 Sum_probs=75.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC------CCc-cE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PAA-DA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~------p~~-D~ 159 (254)
..++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++.+ ++++++.+|+.+.. ++. |+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR-GMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 346789999999999999998874 4557 999999 8888877653 46999999997742 233 99
Q ss_pred EEeccccccCCHHHHHHHHHHH--HHhCCCCCEEEEEccccC
Q 025363 160 IFMKWVLTTWTDDECKLIMENC--YKALPAGGKLIACEPVLP 199 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~--~~~L~pgG~l~i~d~~~~ 199 (254)
|++...++.... ..+++.+ .++|+|||++++......
T Consensus 120 i~~~~~~~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 120 VLLDPPYAKQEI---VSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EEECCCGGGCCH---HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECCCCCchhH---HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 999877653333 3455566 888999999998765443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=98.35 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC---C-CCc-cEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS---I-PAA-DAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~---~-p~~-D~v~ 161 (254)
+..+|||||||+|..+..+++.+| +.+ ++.+|. +.+++.++++ ++|+++.+|+.+. + ++. |+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 345999999999999999999876 677 999999 8888777642 3799999998764 2 233 9999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+..... ....+++++.+.|||||.|++.+..+.
T Consensus 135 ~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~~ 167 (221)
T 3dr5_A 135 GQVSPM-----DLKALVDAAWPLLRRGGALVLADALLD 167 (221)
T ss_dssp ECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred EcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 865433 345789999999999999999666543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=99.40 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC----------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------- 155 (254)
..+..+|||||||+|..+..+++.+| ..+ ++++|. +.+++.+++. ++++++.+|+.+..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34577999999999999999999987 567 999999 8887776643 459999999865311
Q ss_pred ---------C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 ---------A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 ---------~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. .|+|++.... +....+++++.++|+|||+|++.+...+
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred ccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 3 3999987543 3446889999999999999999775543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=91.30 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=75.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC---------CCeEEEeechHHHhhCCCCCCcEEE-eCCCCCC-C--
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF---------ICEGINFDLPEVVAEAPSIPGVTHI-GGDMFKS-I-- 154 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~---------~~~~~~~D~~~~~~~~~~~~~i~~~-~~d~~~~-~-- 154 (254)
+.+.+..+.++.+|||||||+|.++..++++++. .+ ++++|+.++ ...+++++. .+|+.+. .
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 3344433567889999999999999999999765 67 999998442 112578999 9998764 1
Q ss_pred ------CC--ccEEEecccccc---C-CHHH-----HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 155 ------PA--ADAIFMKWVLTT---W-TDDE-----CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 155 ------p~--~D~v~~~~vlh~---~-~~~~-----~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+. .|+|++...+|. + .+.. ...++++++++|||||+|++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 22 399998554432 1 1111 14789999999999999998765
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=93.33 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=75.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCC-----------
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSI----------- 154 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~----------- 154 (254)
.++.+.+.-++++.+|||+|||+|.++..++++ ..+ ++++|+.++ ...++++++.+|+.+..
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 345555644567899999999999999999988 567 999998432 12368999999998752
Q ss_pred ---CCccEEEeccccc---cCC------HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 155 ---PAADAIFMKWVLT---TWT------DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 155 ---p~~D~v~~~~vlh---~~~------~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...|+|++..... .+. .+.+..+++.+.++|||||+|++..+
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2249999843221 111 12246789999999999999987554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=99.14 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=78.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---C------CC-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---I------PA- 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~------p~- 156 (254)
.+..+|||||||+|..+..+++.+| +.+ ++.+|+ +.+++.+++. ++|+++.+|+.+. + ++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 3467999999999999999999987 677 999999 8888776643 4799999998764 2 23
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.|+|++.... .....+++++.++|||||.|++.+..+.
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 194 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTGG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCcC
Confidence 3999986432 3346889999999999999988765543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=95.16 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=72.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCC----------------CCcEEEeCCCCCC---
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSI----------------PGVTHIGGDMFKS--- 153 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~----------------~~i~~~~~d~~~~--- 153 (254)
..++.+|||||||+|.++..+++.. ..+ ++++|+ +.+++.++.+ +++++...|..+.
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 3467899999999999999888763 336 999998 5666654321 2688886665543
Q ss_pred C-----CC-ccEEEeccccccCCHHHHHHHHHHHHHhCC---C--CCEEEEE
Q 025363 154 I-----PA-ADAIFMKWVLTTWTDDECKLIMENCYKALP---A--GGKLIAC 194 (254)
Q Consensus 154 ~-----p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~---p--gG~l~i~ 194 (254)
+ +. .|+|++..++++. +....+++.++++|+ | ||++++.
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 22 3999999999875 456789999999999 9 9987763
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-12 Score=98.09 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=77.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--C-ccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--A-ADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--~-~D~v~~~~ 164 (254)
+..+|||||||+|..+..+++..| +.+ ++++|+ +.+++.++++ ++++++.+|..+..+ . .|+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 467999999999999999999988 677 999999 8888877643 479999999876422 2 59998763
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.. .....++++++++|||||+|++.+....
T Consensus 135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 DV-----FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TT-----SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred Ch-----hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22 3346889999999999999998776543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=98.53 Aligned_cols=131 Identities=10% Similarity=-0.035 Sum_probs=99.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCC-C-ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP-A-ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p-~-~D~v~~~~vlh 167 (254)
.+..+|||||||.|-++..++...|..+ ++++|+ +.+++.++.+ .+.++...|+....| . +|++++.-++|
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence 4477999999999999999999999999 999999 8888887754 457889999988744 3 49999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
++.+++....+ ++.++|+|+|.++..+.-.=..++ ..+ .+.-.+.|.+.+.+.|..+.+
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~gm------------~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KGM------------FQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CH------------HHHHHHHHHHHHHHHTCCEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cch------------hhHHHHHHHHHHHhcCCceee
Confidence 99777666777 999999999998887651111100 000 112356788889989986544
Q ss_pred E
Q 025363 248 L 248 (254)
Q Consensus 248 ~ 248 (254)
+
T Consensus 269 ~ 269 (281)
T 3lcv_B 269 L 269 (281)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-11 Score=95.59 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHcCC------CCeEEEeec-hHHHhhCCCC-----------CCcEEEe
Q 025363 87 SVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVAEAPSI-----------PGVTHIG 147 (254)
Q Consensus 87 ~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~~~------~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~ 147 (254)
.+++.+. ...++.+|||||||+|..+..+++..+. .+ ++++|. +.+++.+++. .+++++.
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3444442 2567789999999999999999987652 57 999998 8888776642 4799999
Q ss_pred CCCCCCCCC---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 148 GDMFKSIPA---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 148 ~d~~~~~p~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+|..+.++. .|+|++...++++. +++.+.|||||+|++.-.
T Consensus 152 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 152 GDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 999876543 39999999998764 678999999999998643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=95.92 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=69.9
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-----hHHHhhCC--CC--CCcEEEeC-CCCCCCCC-ccEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-----PEVVAEAP--SI--PGVTHIGG-DMFKSIPA-ADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-----~~~~~~~~--~~--~~i~~~~~-d~~~~~p~-~D~v~~ 162 (254)
.++++.+|||||||+|.++..++++ .+ ++++|. +.+++... .. ++|.++.+ |+.+..++ .|+|++
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s 154 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC 154 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence 3567889999999999999999987 36 888887 43333222 11 56999999 88765333 499999
Q ss_pred ccccc--cC-CHHH-HHHHHHHHHHhCCCCCEEEEE
Q 025363 163 KWVLT--TW-TDDE-CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh--~~-~~~~-~~~il~~~~~~L~pgG~l~i~ 194 (254)
...++ ++ .+.. ...+|+.++++|||||.+++.
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 76653 11 1221 226899999999999988874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=98.22 Aligned_cols=111 Identities=13% Similarity=0.003 Sum_probs=85.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~ 154 (254)
++..++... .+.++.+|||+|||+|.++..++... |+.+ ++++|+ +.+++.++++ .+|+++.+|+.+. .
T Consensus 191 la~~l~~~~-~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 191 LAQALLRLA-DARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHT-TCCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred HHHHHHHHh-CCCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 455566666 48889999999999999999999988 8888 999999 8888887754 3799999999875 3
Q ss_pred C-Cc-cEEEeccccccC-C-HH----HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 155 P-AA-DAIFMKWVLTTW-T-DD----ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 155 p-~~-D~v~~~~vlh~~-~-~~----~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ .. |+|++.-..+.. . .. ....+++++++.|+|||++++...
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 23 999995443321 1 11 126899999999999999998643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=93.88 Aligned_cols=105 Identities=11% Similarity=-0.000 Sum_probs=74.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC--C------CcEEE--eCCCCCCCCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI--P------GVTHI--GGDMFKSIPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~--~------~i~~~--~~d~~~~~p~ 156 (254)
.+.+.. .+.++.+|||||||+|.++..+++. .+ ++++|+.++...+++. . ++.++ .+|+.+..+.
T Consensus 65 ~i~~~~-~~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 65 WMEERG-YVELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHT-SCCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHcC-CCCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 344443 3677889999999999999998887 57 9999994464333222 2 68999 8999764333
Q ss_pred -ccEEEeccccccCCH---HH--HHHHHHHHHHhCCCCC--EEEEEccc
Q 025363 157 -ADAIFMKWVLTTWTD---DE--CKLIMENCYKALPAGG--KLIACEPV 197 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~---~~--~~~il~~~~~~L~pgG--~l~i~d~~ 197 (254)
.|+|++... +.... +. ...+|+.++++||||| .+++..+.
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 399999766 33221 11 2248999999999999 88885543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=101.16 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CC-Cc-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IP-AA-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~~-D~v~~~~ 164 (254)
..++.+|||||||+|.++..++++ +..+ ++++|..++++.+++. ++|+++.+|+.+. +| +. |+|++..
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeC
Confidence 345779999999999999998887 4446 9999985566655432 5799999999876 55 33 9999875
Q ss_pred ccccCC-HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 VLTTWT-DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 vlh~~~-~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+.+.+. ......+++++++.|||||+++.
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred chhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 544332 23456899999999999999873
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=96.10 Aligned_cols=97 Identities=9% Similarity=0.000 Sum_probs=75.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC-----CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI-----PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~-----p~-~D~v~ 161 (254)
++.+|||+|||+|.++..++++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+.. .. .|+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 467999999999999999887743 46 999999 8888877653 47999999986642 13 59999
Q ss_pred eccccccCCHHHHHHHHHHH--HHhCCCCCEEEEEcccc
Q 025363 162 MKWVLTTWTDDECKLIMENC--YKALPAGGKLIACEPVL 198 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~--~~~L~pgG~l~i~d~~~ 198 (254)
+...+| . ....++++.+ .++|+|||++++.....
T Consensus 131 ~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 131 LDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 987765 3 3456788888 56799999999876543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=94.83 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=74.2
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC--C------CcEEE--eCCCCCCCCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI--P------GVTHI--GGDMFKSIPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~--~------~i~~~--~~d~~~~~p~ 156 (254)
.+.+.. .+.++.+|||||||+|.++..++++ .+ ++++|+.++...+++. . ++.++ .+|+.+..+.
T Consensus 73 ~i~~~~-~~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 147 (276)
T 2wa2_A 73 WIDERG-GVELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF 147 (276)
T ss_dssp HHHHTT-SCCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred HHHHcC-CCCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence 344443 3667889999999999999999987 47 9999994364433322 2 68999 8998764333
Q ss_pred -ccEEEeccccccCCH----HH-HHHHHHHHHHhCCCCC--EEEEEccc
Q 025363 157 -ADAIFMKWVLTTWTD----DE-CKLIMENCYKALPAGG--KLIACEPV 197 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~----~~-~~~il~~~~~~L~pgG--~l~i~d~~ 197 (254)
.|+|++... +.... .. ...+|+.+.++||||| .+++..+.
T Consensus 148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 399999766 33221 11 2248999999999999 88885443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=92.81 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=80.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-C
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-P 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-p 155 (254)
...++...+ ..++.+|||+|||+|.++..+++. ..+ ++++|. +.+++.+++. +++++..+|+.+.. +
T Consensus 80 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 80 SFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence 345666663 778899999999999999999998 567 999998 8887776642 57999999998875 5
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. .|+|++. .+ +...+++++.++|+|||++++...
T Consensus 156 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 156 EGIFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TTCBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCcccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 3999972 22 234789999999999999999775
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-11 Score=91.59 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=72.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----C-CcEEEeCCCCCCCC-------CccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIP-------AADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~-~i~~~~~d~~~~~p-------~~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++..+ . ++++|. +.+++.++++ . +++++.+|+.+..+ ..|+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--E-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--E-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--e-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 577999999999999999999855 4 899999 8888877653 2 79999999877422 24999998
Q ss_pred cccccCCHHHHHHHHHHHH--HhCCCCCEEEEEcccc
Q 025363 164 WVLTTWTDDECKLIMENCY--KALPAGGKLIACEPVL 198 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~~~ 198 (254)
..+| -..+ ++++.+. ++|+|||++++.....
T Consensus 118 ~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7776 2223 3455555 9999999998866543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=92.18 Aligned_cols=93 Identities=20% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCCCC-C--cc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIP-A--AD 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~~p-~--~D 158 (254)
..++.+|||||||+|..+..+++.. +..+ ++++|+ +.+++.+++. .+++++.+|+.+..+ . .|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 5678899999999999999999986 5567 999999 8888776532 479999999876532 2 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+|++...++++ ++++.+.|||||+|++...
T Consensus 154 ~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVV--------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSC--------CHHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHH--------HHHHHHhcCCCcEEEEEEe
Confidence 99998888765 3578999999999999754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-11 Score=96.81 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=77.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CC-----C-cc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IP-----A-AD 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p-----~-~D 158 (254)
+..+|||||||+|..+..+++.+| +.+ ++.+|. +.+++.+++. ++|+++.+|+.+. ++ . .|
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 467999999999999999999987 667 999999 8888777643 4799999997553 21 3 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+|++.... .....+++++.++|+|||.|++.+..+.
T Consensus 151 ~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 99976542 3456889999999999999999776553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-11 Score=96.30 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=77.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---C------CCc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---I------PAA 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~------p~~ 157 (254)
.+..+|||||||+|..+..+++..| +.+ ++.+|. +.+++.+++. ++|+++.+|..+. + ++.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 3467999999999999999999987 677 999999 8888776542 4799999998764 2 233
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|+|++... ......+++++.+.|+|||.|++.+...
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99997532 2445789999999999999998866544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-11 Score=96.13 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A- 156 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~- 156 (254)
..+..+|||||||+|..+..+++.++ +.+ ++++|. +.+++.+++. .+++++.+|+.+..+ .
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 34567999999999999999999987 667 999999 8887776542 589999999865421 3
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++... ......+++++.++|+|||.+++.+...
T Consensus 146 ~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 146 FDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred ccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 399998543 2344688999999999999999977654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=92.34 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=76.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-----CCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCCC---
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-----RFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSI--- 154 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-----~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~~--- 154 (254)
..++.+|||||||+|..+..+++.. |..+ ++++|. +.+++.+++. .+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 5667899999999999999999986 4567 999999 8887776542 47999999998754
Q ss_pred -CC---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 155 -PA---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 155 -p~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+. .|+|++...++++ ++++.+.|||||++++.-.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 22 3999999988864 4688999999999998654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=95.07 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=81.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC---------CCCcEEEeCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS---------IPGVTHIGGDMFKS 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~---------~~~i~~~~~d~~~~ 153 (254)
...++..++ ..++.+|||+|||+|.++..+++.. |..+ ++++|. +.+++.+++ .++++++.+|+.+.
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 445677774 7888999999999999999999964 6778 999999 888776653 24799999999876
Q ss_pred -CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 -IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 -~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++. .|+|++. .++ ...+++++.++|+|||++++...
T Consensus 166 ~~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVLD-----MLA--PWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeC
Confidence 443 3999982 221 23789999999999999999765
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-11 Score=97.38 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC----------------CCCCcEEEeCCCCCCC--CC-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP----------------SIPGVTHIGGDMFKSI--PA- 156 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~----------------~~~~i~~~~~d~~~~~--p~- 156 (254)
...+|||||||+|..+..+++. +..+ ++++|+ +.+++.++ ..++++++.+|..+.+ ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4679999999999999999998 7777 999999 88876643 2367999999986542 33
Q ss_pred ccEEEeccccccCCHHH--HHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ADAIFMKWVLTTWTDDE--CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++....+..+... ..+++++++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 39999865543222122 2678999999999999998863
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-11 Score=98.22 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v 160 (254)
.+..+|||||||+|..+..+++..+..+ ++++|+ +.+++.+++ .++++++.+|+.+.. ++ .|+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3568999999999999999998877778 999999 888776543 268999999987642 33 3999
Q ss_pred EeccccccCCHHHH--HHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDDEC--KLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~~~--~~il~~~~~~L~pgG~l~i~d 195 (254)
++....+..+.... .+++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 98544332222222 589999999999999999863
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=96.89 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=80.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----------------CCcEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----------------PGVTH 145 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----------------~~i~~ 145 (254)
...++..++ ..++.+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ .++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 445666664 7788999999999999999999984 6678 999999 8877766542 47999
Q ss_pred EeCCCCCC---CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 146 IGGDMFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 146 ~~~d~~~~---~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
..+|+.+. ++. .|+|++... .. ..+++++.++|+|||+|++....
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~-~~------~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDML-NP------HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp EESCTTCCC-------EEEEEECSS-ST------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred EECChHHcccccCCCCeeEEEECCC-CH------HHHHHHHHHhcCCCcEEEEEeCC
Confidence 99999875 233 399998432 21 23789999999999999987653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-12 Score=102.90 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=75.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~vl 166 (254)
++.+|||+|||+|..+..+++.. .+ ++++|+ +.+++.++.+ ++++++.+|+.+..+. .|+|++...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 57899999999999999999874 66 999999 8888877653 4799999999776433 3999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
|+..+. ...+.+++++|+|||.+++
T Consensus 155 ~~~~~~--~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 155 GGPDYA--TAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp SSGGGG--GSSSBCTTTSCSSCHHHHH
T ss_pred CCcchh--hhHHHHHHhhcCCcceeHH
Confidence 876543 3367789999999998554
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=96.04 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=77.2
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
+.+.+++.++ ..++.+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. ++++++.+|+.+. +
T Consensus 16 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 16 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KK-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 4556777774 6778899999999999999999985 36 999999 8887765532 4799999999875 6
Q ss_pred CCccEEEeccccccCCHHHHHHHHH--------------HH--HHhCCCCCEEE
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIME--------------NC--YKALPAGGKLI 192 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~--------------~~--~~~L~pgG~l~ 192 (254)
+..|+|+++... +|+.+....+|. ++ +++++|||+++
T Consensus 92 ~~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 PFFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 656998885444 455555555553 22 46899999653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=97.28 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCCc-cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAA-DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~-D~v~~~~vlh 167 (254)
++++|||||||+|.++...+++. ..+ ++++|..++++.+++. ++|+++.+|+.+. +|+. |+|++-..-+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 46799999999999988777653 235 9999985566555431 6899999999886 7765 9999743322
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TWT-DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~~-~~~~~~il~~~~~~L~pgG~l~i 193 (254)
... ......++....+.|||||+++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 221 23467888889999999998764
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-11 Score=97.79 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=76.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------CCCcEEEeCCCCCCC---CC-ccEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~~~i~~~~~d~~~~~---p~-~D~v 160 (254)
...+|||||||+|..+..+++..+..+ ++++|+ +.+++.+++ .++++++.+|+.+.+ ++ .|+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 457999999999999999999877777 999999 888776542 258999999987642 33 3999
Q ss_pred Eecccccc---CCHHH--HHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTT---WTDDE--CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~---~~~~~--~~~il~~~~~~L~pgG~l~i~d 195 (254)
++....+. -+... ..+++++++++|+|||.|++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99766543 11111 3688999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-11 Score=96.52 Aligned_cols=98 Identities=22% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
...+|||||||+|.++..+++..+..+ ++++|+ +.+++.+++ .+|++++.+|..+.+ ++ .|+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 467999999999999999998766677 999999 888876653 268999999987642 23 39999
Q ss_pred eccccccCCHHH--HHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDE--CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~d 195 (254)
+....+..+... ..+++++++++|+|||.+++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 854433222110 2578999999999999998863
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-11 Score=99.08 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~---~p~--~D~ 159 (254)
....+|||||||+|..+..+++..|..+ ++++|+ +.+++.+++ .++++++.+|+.+. .+. .|+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4568999999999999999999877778 999999 888877653 25899999998764 232 399
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++....+.-..+. ...++++++++|+|||+|++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99854321111111 368999999999999999985
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=94.69 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=79.7
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-C-----
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-I----- 154 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~----- 154 (254)
...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|. +.+++.++++ .+++++.+|+.+. .
T Consensus 76 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 76 PIVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHT
T ss_pred HHHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhc
Confidence 34443 667889999999999999999998876 67 999999 8877766543 4799999998764 2
Q ss_pred CC-ccEEEec------ccccc---CCHH-------HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 155 PA-ADAIFMK------WVLTT---WTDD-------ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 155 p~-~D~v~~~------~vlh~---~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+. .|+|++. .+++. |+.+ ...++|+++.+.|||||+|++......
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 33 3999975 22221 2221 236899999999999999999776554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=97.75 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
+..+|||||||+|..+..+++..|..+ ++++|+ +.+++.+++ .++++++.+|+.+.. ++ .|+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 457999999999999999998877778 999999 888876543 257999999987642 33 39999
Q ss_pred eccccccCCH-HHH--HHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTD-DEC--KLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~-~~~--~~il~~~~~~L~pgG~l~i~d 195 (254)
+...-+ +.. ... .+++++++++|+|||.+++..
T Consensus 195 ~d~~~p-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDP-IGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCS-SSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 854322 221 111 689999999999999999853
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.4e-11 Score=97.76 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
...+|||||||+|..+..+++..|..+ ++++|+ +.+++.+++ .++++++.+|+.+.+ ++ .|+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 457999999999999999998877778 999999 888876543 257999999987642 23 39999
Q ss_pred eccccccCCHH-HH--HHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDD-EC--KLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~-~~--~~il~~~~~~L~pgG~l~i~d 195 (254)
+...-+ +.+. .. .+++++++++|+|||.|++..
T Consensus 187 ~d~~~~-~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCC-CCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 854332 3222 21 689999999999999999864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-11 Score=97.43 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v 160 (254)
....+|||||||+|..+..+++..+..+ ++++|+ +.+++.+++ .++++++.+|..+.+ ++ .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 4568999999999999999999877778 999999 888876653 268999999987642 23 3999
Q ss_pred EeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++....+..+.. ...+++++++++|+|||.|++..
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 985543321111 13578999999999999999865
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-10 Score=96.87 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=83.7
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p 155 (254)
-+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .++.++.+|+.+. ++
T Consensus 250 l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~ 327 (450)
T 2yxl_A 250 VASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIG 327 (450)
T ss_dssp HHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSC
T ss_pred HHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhc
Confidence 3445553 677889999999999999999999876 67 999999 7777665542 4799999998765 33
Q ss_pred -C-ccEEEe------ccccccCCHH-------HH-------HHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 -A-ADAIFM------KWVLTTWTDD-------EC-------KLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 -~-~D~v~~------~~vlh~~~~~-------~~-------~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. .|+|++ ..+++..++. +. .++|+++.+.|||||+|++.+....
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3 399996 3344443321 11 5789999999999999999877554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-10 Score=95.76 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=79.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC-ccEEEeccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-ADAIFMKWV 165 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~-~D~v~~~~v 165 (254)
..++.+|||+|||+|.++..+++..+..+ ++++|+ +.+++.++++ .++.++.+|+.+. .+. .|+|++...
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 56788999999999999999999988778 999999 8888877653 5689999999876 212 399998655
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. ...++++++.+.|+|||.+++.....
T Consensus 196 ~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 3 33568999999999999999877654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=90.79 Aligned_cols=97 Identities=7% Similarity=-0.028 Sum_probs=74.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC--C-C-ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI--P-A-ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~--p-~-~D~v~~~~v 165 (254)
++.+|||+|||+|.++..++++.. .+ ++++|+ +.+++.++++ .+++++.+|+.+.. + . .|+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 467999999999999999887743 36 999999 8888877653 47999999987642 2 2 399999777
Q ss_pred cccCCHHHHHHHHHHHHH--hCCCCCEEEEEcccc
Q 025363 166 LTTWTDDECKLIMENCYK--ALPAGGKLIACEPVL 198 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~--~L~pgG~l~i~d~~~ 198 (254)
+| . .....+++.+.+ +|+|||++++.....
T Consensus 132 ~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 132 FR-R--GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CC-C--CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 65 2 234567788866 499999998866543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-10 Score=87.10 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCCc-cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPAA-DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~~-D~v~~~~vlh~~~~ 171 (254)
..++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+ +|.. |+|++...+|++.+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence 345789999999999999999887 4446 999999 8888877654 379999999976 4444 99999999998876
Q ss_pred HHHHHHHHHHHHhC
Q 025363 172 DECKLIMENCYKAL 185 (254)
Q Consensus 172 ~~~~~il~~~~~~L 185 (254)
....++++++.+.+
T Consensus 126 ~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 126 HSDRAFIDKAFETS 139 (200)
T ss_dssp --CHHHHHHHHHHE
T ss_pred chhHHHHHHHHHhc
Confidence 55568899999998
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=91.42 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCCCCccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIPAADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~p~~D~v~~~~v 165 (254)
...+|||||||+|..+..+++. + .+ ++.+|+ +.+++.+++. +|++++.+|..+.....|+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 4579999999999999999988 6 77 999999 8999888753 479999999876552249999852
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
++. ..++++++++|+|||.+++.
T Consensus 148 ----~dp--~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 ----EPD--IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ----CCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred ----CCh--HHHHHHHHHhcCCCcEEEEE
Confidence 222 24899999999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-10 Score=98.74 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=87.8
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCc
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGV 143 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i 143 (254)
.|..+..........-+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ . |
T Consensus 77 ~~~~G~~~vQd~ss~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v 153 (464)
T 3m6w_A 77 FFYAGLYYIQEPSAQAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-L 153 (464)
T ss_dssp HHHTTSEEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-C
T ss_pred HHhCCeEEEECHHHHHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-E
Confidence 3444433333333333445553 667899999999999999999999865 57 999999 8888777653 4 8
Q ss_pred EEEeCCCCCC---CCCc-cEEEe-------------ccccccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccC
Q 025363 144 THIGGDMFKS---IPAA-DAIFM-------------KWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 144 ~~~~~d~~~~---~p~~-D~v~~-------------~~vlh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.++.+|+.+. .++. |+|++ ..+...|+.++. .++|+++.+.|||||+|++....+.
T Consensus 154 ~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 154 AVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 8999987654 2333 99995 222233443333 6799999999999999998766543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-10 Score=89.26 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=78.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-~D~v~~~~vlh 167 (254)
.+..+|||||||+|-++..+. +..+ ++++|+ +.+++.++.. .+.++...|.... .|. +|++++.-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567899999999999999887 7778 999999 8888877654 5678899999887 444 49999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++.+.+....+ ++.+.|+|++.++..+
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98766655556 8889999998877766
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=95.24 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
...+|||||||+|..+..+++..+..+ ++++|+ +.+++.+++ .++++++.+|+.+.. ++ .|+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 357999999999999999998877778 999999 888776543 268999999986642 23 39999
Q ss_pred eccccccCCHH---HHHHHHHHHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTDD---ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+...-+..... ...+++++++++|+|||.|++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 74322201110 1258899999999999999985
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=88.16 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=67.3
Q ss_pred CCCCCCeEEEecC------cccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCCCCcEE-EeCCCCCC-CCCc-cEEEe
Q 025363 94 GFKGVKRLVDVGG------SAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSIPGVTH-IGGDMFKS-IPAA-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~------G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~~~i~~-~~~d~~~~-~p~~-D~v~~ 162 (254)
..+++.+|||+|| |+|. ..+++..+ +.+ ++++|+ +. + +++++ +.+|+.+. ++.. |+|++
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvs 129 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIIS 129 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC-C------CCCEEEEECccccCCccCcccEEEE
Confidence 3677889999999 4477 44566666 577 999999 55 1 47899 99999875 4443 99998
Q ss_pred cccccc---C------CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTT---W------TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~---~------~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
....+. + ..+....+++.++++|||||+|++..+
T Consensus 130 n~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 130 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 533211 0 012345899999999999999998643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=89.95 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=73.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------C-CcEEEeCCCCCCC------CC-ccEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------P-GVTHIGGDMFKSI------PA-ADAI 160 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~-~i~~~~~d~~~~~------p~-~D~v 160 (254)
++.+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ + +++++.+|+++.. .. .|+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 46799999999999999999864 37 999999 8888877653 2 5999999998753 22 4999
Q ss_pred Eeccc---------cccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 161 FMKWV---------LTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 161 ~~~~v---------lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.-- +.++ .+....+++++.++|+|||.+++...
T Consensus 230 i~dPP~~~~~~~~~~~~~-~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp EECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCccccCCchHHHHHH-HHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 98321 1111 24567899999999999999777554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-09 Score=81.78 Aligned_cols=89 Identities=13% Similarity=0.017 Sum_probs=70.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----C-CcEEEeCCCCCCCCCccEEEecccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIPAADAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~-~i~~~~~d~~~~~p~~D~v~~~~vlh~ 168 (254)
..++.+|||+|||+|.++..+++..+ .+ ++++|+ +.+++.++.+ . +++++.+|+.+.....|+|++.-.+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcc
Confidence 34578999999999999999998733 36 999999 8888777653 1 799999999764223499999888887
Q ss_pred CCHHHHHHHHHHHHHhC
Q 025363 169 WTDDECKLIMENCYKAL 185 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L 185 (254)
+.......+++++.+.+
T Consensus 125 ~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS 141 (207)
T ss_dssp SSTTTTHHHHHHHHHHC
T ss_pred ccCCchHHHHHHHHHhc
Confidence 76555567899999998
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-09 Score=90.53 Aligned_cols=104 Identities=12% Similarity=-0.034 Sum_probs=75.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
+..++... +.++.+|||+|||+|.++..+++..+..+ ++++|+ +.+++.++.+ ++|+++.+|+.+. .+
T Consensus 207 a~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 207 ANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY 283 (373)
T ss_dssp HHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred HHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence 33344433 56788999999999999999999987667 999999 8888887754 4799999999876 44
Q ss_pred -Cc-cEEEeccccccCC-----HHH-HHHHHHHHHHhCCCCCEEEE
Q 025363 156 -AA-DAIFMKWVLTTWT-----DDE-CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 -~~-D~v~~~~vlh~~~-----~~~-~~~il~~~~~~L~pgG~l~i 193 (254)
+. |+|++.-.++... .++ -.++++.++++| ||++++
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~ 327 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVF 327 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEE
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEE
Confidence 33 9999965433211 112 267889999988 555554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=91.83 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=79.2
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC--ccE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADA 159 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~--~D~ 159 (254)
+++.+++.++ ..+..+|||+|||+|.++..+++++ +..+ ++++|+ +.+++.+ .+++++.+|+++..+. .|+
T Consensus 27 l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 27 VVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCE
Confidence 3444555553 3446699999999999999999987 5667 999999 7777666 6799999999887443 399
Q ss_pred EEeccccc----------cCCHHHH-----------------HHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVLT----------TWTDDEC-----------------KLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vlh----------~~~~~~~-----------------~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.--.. ++.++.. ..+++++.+.|+|||++++.-+
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 99942111 1222221 2679999999999999988654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=90.56 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=72.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p 155 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++ ..+ ++++|+ +.+++.+++. ++++++.+|+.+. .+
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 4566677664 677889999999999999999987 346 999999 8887766542 5799999999876 44
Q ss_pred CccEEEeccccccCCHHHHHHHH---------------HHHHHhCCCCC
Q 025363 156 AADAIFMKWVLTTWTDDECKLIM---------------ENCYKALPAGG 189 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il---------------~~~~~~L~pgG 189 (254)
..|+|++.-. ++|+.+....++ +.+.++++|+|
T Consensus 106 ~~D~Vv~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 106 KFDVCTANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cCCEEEEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 4599988544 446666666666 44678888876
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-10 Score=97.40 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=86.5
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCc
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGV 143 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i 143 (254)
.|..+.-........-+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .+|
T Consensus 81 ~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~nv 158 (456)
T 3m4x_A 81 LHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSNA 158 (456)
T ss_dssp HHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSSE
T ss_pred HHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 3444433333333334455553 677899999999999999999998764 57 999999 8777766543 568
Q ss_pred EEEeCCCCCC---CCCc-cEEEecc------cccc-------CCHHH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 144 THIGGDMFKS---IPAA-DAIFMKW------VLTT-------WTDDE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 144 ~~~~~d~~~~---~p~~-D~v~~~~------vlh~-------~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.++.+|..+. .++. |+|++.- +++. |+.++ ..++|+++.+.|||||+|+.....+.
T Consensus 159 ~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 159 IVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 8998887653 2333 9998722 2221 22111 13789999999999999998765543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-09 Score=93.15 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=81.1
Q ss_pred hhcCCCC--CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC
Q 025363 90 EGYNGFK--GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA 156 (254)
Q Consensus 90 ~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~ 156 (254)
..++ .. ++.+|||+|||+|..+..+++..+ ... ++++|+ +.+++.++++ .+|.++.+|+.+. .+.
T Consensus 109 ~~L~-~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 109 AALF-ADGNAPQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHT-TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTT
T ss_pred HHhC-cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccc
Confidence 4443 44 788999999999999999999875 467 999999 8887766543 5799999998764 233
Q ss_pred c-cEEEec-------------cccccCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 A-DAIFMK-------------WVLTTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~-D~v~~~-------------~vlh~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. |+|++. .+...|+.++ -.++|+++.++|||||+|++......
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 3 999971 1223455433 24789999999999999999776554
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=86.21 Aligned_cols=105 Identities=9% Similarity=0.152 Sum_probs=74.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~- 156 (254)
..+.+++..+ ..++.+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence 4566777774 6778899999999999999999986 56 999999 8887766542 6899999999875 553
Q ss_pred ccEEEeccccccCCHHHHHHHH--------------HHHHHhCCCCCEEE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIM--------------ENCYKALPAGGKLI 192 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il--------------~~~~~~L~pgG~l~ 192 (254)
.+..++.+.-++++..-...++ +.+.++++|+|++.
T Consensus 94 ~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 94 QSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred CCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 3445555544445443333443 33677777777543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-10 Score=102.49 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=80.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC-C-ccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-A-ADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p-~-~D~v~~~~ 164 (254)
...+|||||||+|.++..+++. +.+ ++++|. +.+++.|+.. .+|+|..+++.+. .+ + .|+|++..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 4579999999999999999998 667 999999 8888776532 3589999998653 22 3 39999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+|||+++.+...-+.++.+.|+++|+.++......+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998776555566788888888887777665543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-10 Score=89.63 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=79.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~- 156 (254)
..+.+++.++ ..++.+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 17 ~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccC
Confidence 4556677774 6778899999999999999999985 56 999999 8888887764 5799999999875 443
Q ss_pred ccEEEeccccccCCHHHHHHHH--------------HHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIM--------------ENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il--------------~~~~~~L~pgG~l~i~d~ 196 (254)
...+++.+.-++.+......++ +.+.++|+|||++.+...
T Consensus 93 ~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 93 QRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred CCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 2334444443344444444443 668999999998877543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-09 Score=91.21 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC-----CCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCC-C-ccEEEe
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF-----ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP-A-ADAIFM 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~-----~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p-~-~D~v~~ 162 (254)
.+..+|||+|||+|.++..+++..+. .+ ++++|+ +.+++.++.+ .++.+..+|.++..+ . .|+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 35689999999999999999998764 56 899999 8877766543 368999999988743 3 399999
Q ss_pred ccccccCCHHHH----------------HHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWTDDEC----------------KLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~~~~~----------------~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.-.++.++.++. ..+++++.+.|+|||++++.-+
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 877766654332 2689999999999999888653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-09 Score=86.35 Aligned_cols=120 Identities=15% Similarity=0.028 Sum_probs=88.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
.+++.+|||+|||+|.++..++++. ..+ ++++|+ |..++.++++ ++|++..+|..+..+. +|.|++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence 4578899999999999999998873 457 999999 8887776653 6799999999876544 39988754
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
.- .+...|..+.++|||||.|.+.+....+.. .....+.+.++.++.|++
T Consensus 201 p~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~------------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 201 VV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCE
T ss_pred CC------cHHHHHHHHHHHcCCCCEEEEEeeeccccc------------------------chhHHHHHHHHHHHcCCc
Confidence 32 224678888999999999888765432210 012345677788888987
Q ss_pred ee
Q 025363 245 HL 246 (254)
Q Consensus 245 ~~ 246 (254)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-09 Score=92.16 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CC-C-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP-A- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p-~- 156 (254)
+...++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ -++.++.+|+.+. ++ .
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCC
Confidence 445553 66788999999999999999999998878 999998 7776665543 3588999999775 23 2
Q ss_pred ccEEEe------ccccccCCH-------HHH-------HHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFM------KWVLTTWTD-------DEC-------KLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~------~~vlh~~~~-------~~~-------~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.|+|++ ..+++.-++ ++. .++|+++.+.|||||+|++.+..+.
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 399986 234443322 122 4889999999999999999876553
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.8e-08 Score=81.01 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=91.9
Q ss_pred CCeEEEecCcccHHHHHH--------HHHc-------CCCCeEEEeechHH--------HhhCCC----------C--CC
Q 025363 98 VKRLVDVGGSAGDCLRMI--------LQKH-------RFICEGINFDLPEV--------VAEAPS----------I--PG 142 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l--------~~~~-------~~~~~~~~~D~~~~--------~~~~~~----------~--~~ 142 (254)
..+|+|+|||+|..+..+ .+++ |..+ ++.-|+|.- +...++ . ++
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 578999999999988876 3333 5666 788788532 122111 0 11
Q ss_pred --cEEEeCCCCCC-CCCc--cEEEeccccccCCH------------------------------------HHHHHHHHHH
Q 025363 143 --VTHIGGDMFKS-IPAA--DAIFMKWVLTTWTD------------------------------------DECKLIMENC 181 (254)
Q Consensus 143 --i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~------------------------------------~~~~~il~~~ 181 (254)
+.-+.++|... +|.. |+|+.+.+||-.++ .+-..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466777776 6764 99999999996551 1344579999
Q ss_pred HHhCCCCCEEEEEccccCCCCCCh-------h-hhhhcccchHhhhhc--------cccCceecCHHHHHHHHH-hCCCC
Q 025363 182 YKALPAGGKLIACEPVLPDDSNES-------Q-RTRALLEGDIFVMTI--------YRAKGNHRTEQEFKQLGF-FAGFP 244 (254)
Q Consensus 182 ~~~L~pgG~l~i~d~~~~~~~~~~-------~-~~~~~~~~~~~~~~~--------~~~~~~~~t~~e~~~ll~-~aGf~ 244 (254)
++.|+|||++++.-....+..... + ......+.++....+ ....-..++.+|++++++ ++||+
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 999999999998766544321000 0 000000111100000 000012368999999998 59999
Q ss_pred eeeEEE
Q 025363 245 HLRLYR 250 (254)
Q Consensus 245 ~~~~~~ 250 (254)
+..+..
T Consensus 292 I~~le~ 297 (374)
T 3b5i_A 292 IDKLVV 297 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=84.68 Aligned_cols=111 Identities=5% Similarity=-0.097 Sum_probs=81.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--------------------------------------CCeE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEG 125 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--------------------------------------~~~~ 125 (254)
++..++... .|.++..|||.+||+|.++++.+....+ .+ +
T Consensus 189 lAa~ll~l~-~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V 266 (393)
T 3k0b_A 189 MAAALVLLT-SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-I 266 (393)
T ss_dssp HHHHHHHHS-CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-E
T ss_pred HHHHHHHHh-CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-E
Confidence 455566666 4888999999999999999988876443 56 9
Q ss_pred EEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC-ccEEEeccc--cccCCHHHHHHHHHHHHHhCCC--CCEE
Q 025363 126 INFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA-ADAIFMKWV--LTTWTDDECKLIMENCYKALPA--GGKL 191 (254)
Q Consensus 126 ~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~-~D~v~~~~v--lh~~~~~~~~~il~~~~~~L~p--gG~l 191 (254)
+++|+ +.+++.++.+ ++|+++.+|+.+. .+. .|+|++.-- ...-..++...+.+.+.+.||+ ||++
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 346 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSV 346 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEE
Confidence 99999 8898887753 4699999999886 333 399999733 3221224556677777777765 8988
Q ss_pred EEEcc
Q 025363 192 IACEP 196 (254)
Q Consensus 192 ~i~d~ 196 (254)
++...
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-09 Score=89.45 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=75.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC------CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~------p~-~D~v~ 161 (254)
++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+++.. +. .|+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 6789999999999999999987 3346 999999 8888777653 27999999987752 22 39999
Q ss_pred eccccccCCH-------HHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 162 MKWVLTTWTD-------DECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 162 ~~~vlh~~~~-------~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+.-.....+. .....++.++.+.|+|||.|++....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 8432211111 45678999999999999999887653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-09 Score=89.13 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC------CCc-cEEEe
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI------PAA-DAIFM 162 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~------p~~-D~v~~ 162 (254)
++.+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ .+++++.+|+++.. +.. |+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 6789999999999999999988 456 999999 8888877653 35899999997752 223 99998
Q ss_pred ccccccCC-------HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWT-------DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~-------~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.--....+ .+...++++++.+.|+|||.|++...
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43221111 14456899999999999999998765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=81.12 Aligned_cols=112 Identities=9% Similarity=-0.054 Sum_probs=84.9
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--------------------------------------CCe
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--------------------------------------ICE 124 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--------------------------------------~~~ 124 (254)
.++..++... .|.++..++|.+||+|.++++.+....+ .+
T Consensus 181 ~LAaall~l~-~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~- 258 (384)
T 3ldg_A 181 NMAAAIILLS-NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD- 258 (384)
T ss_dssp HHHHHHHHHT-TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-
T ss_pred HHHHHHHHHh-CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-
Confidence 3455666666 4888999999999999999998876443 56
Q ss_pred EEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC-ccEEEeccc--cccCCHHHHHHHHHHHHHhCCC--CCE
Q 025363 125 GINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA-ADAIFMKWV--LTTWTDDECKLIMENCYKALPA--GGK 190 (254)
Q Consensus 125 ~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~-~D~v~~~~v--lh~~~~~~~~~il~~~~~~L~p--gG~ 190 (254)
++++|+ +.+++.++.+ ++|+++.+|+.+. .+. .|+|++.-- ...-..++...+.+.+.+.||+ ||+
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 999999 8888887754 4699999999886 333 399999633 3322346677888888888876 998
Q ss_pred EEEEcc
Q 025363 191 LIACEP 196 (254)
Q Consensus 191 l~i~d~ 196 (254)
+++...
T Consensus 339 ~~iit~ 344 (384)
T 3ldg_A 339 QFILTN 344 (384)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-09 Score=89.55 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=73.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C--CcEEEeCCCCCCCC------C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P--GVTHIGGDMFKSIP------A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~--~i~~~~~d~~~~~p------~-~D~ 159 (254)
.++.+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ . +++|+.+|+++.++ . .|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 457899999999999999999863 235 999999 8888877653 2 89999999977422 2 399
Q ss_pred EEecccc-----ccCC--HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVL-----TTWT--DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vl-----h~~~--~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.-.. .... .+...++++.+.+.|+|||.|++...
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9983222 1111 23455688999999999999988653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=85.40 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=73.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.++.+|||+|||+|.++.. ++ ...+ ++++|+ +.+++.++++ ++++++.+|+++.....|+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH-
Confidence 4678999999999999999 76 3556 999999 8888777653 47999999998766334999984321
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
....+++.+.++|+|||.|++.+...
T Consensus 269 -----~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 -----FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp -----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 12378999999999999999977643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.5e-08 Score=83.31 Aligned_cols=111 Identities=14% Similarity=-0.007 Sum_probs=83.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--------------------------------------CCeE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEG 125 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--------------------------------------~~~~ 125 (254)
++..++... .|.++.+|||.+||+|.++++.+....+ .+ +
T Consensus 183 lAa~ll~~~-~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V 260 (385)
T 3ldu_A 183 LAAGLIYLT-PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-I 260 (385)
T ss_dssp HHHHHHHTS-CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-E
T ss_pred HHHHHHHhh-CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-E
Confidence 455566666 4888999999999999999998876432 56 9
Q ss_pred EEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-CC-ccEEEecccccc-CC-HHHHHHHHHHHHHhCCC--CCEE
Q 025363 126 INFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-PA-ADAIFMKWVLTT-WT-DDECKLIMENCYKALPA--GGKL 191 (254)
Q Consensus 126 ~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-p~-~D~v~~~~vlh~-~~-~~~~~~il~~~~~~L~p--gG~l 191 (254)
+++|+ +.+++.++.+ .+|+|..+|+.+.. +. .|+|++.--... +. .++...+.+++.+.||+ |+.+
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 99999 8899888764 36999999998863 33 399999544321 22 34567788888888876 8888
Q ss_pred EEEcc
Q 025363 192 IACEP 196 (254)
Q Consensus 192 ~i~d~ 196 (254)
++...
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-08 Score=84.04 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=73.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC---CC-ccEEEeccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI---PA-ADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~---p~-~D~v~~~~v 165 (254)
+++.+|||+|||+|.++..+++. +.. ++++|+ +.+++.++++ -...+..+|+++.+ +. .|+|++.-.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 45889999999999999999987 556 999999 8888887754 12357789987752 23 499998433
Q ss_pred cccCC-------HHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 166 LTTWT-------DDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 166 lh~~~-------~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
....+ ...-.++++.+.++|+|||+|++....
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 21111 123457899999999999999976654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-08 Score=87.01 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=81.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-------------CCCCeEEEeec-hHHHhhCCCC------C--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-------------RFICEGINFDL-PEVVAEAPSI------P-- 141 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------~~~~~~~~~D~-~~~~~~~~~~------~-- 141 (254)
+++.+++... ..+..+|+|.|||+|.++..+++.. +..+ ++++|+ +.+++.++.+ .
T Consensus 159 v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~ 236 (445)
T 2okc_A 159 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTD 236 (445)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcC
Confidence 3445666663 5567899999999999999988764 3467 999999 8777766432 2
Q ss_pred CcEEEeCCCCCCCC-C-ccEEEeccccccCCHH---------------HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 142 GVTHIGGDMFKSIP-A-ADAIFMKWVLTTWTDD---------------ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 142 ~i~~~~~d~~~~~p-~-~D~v~~~~vlh~~~~~---------------~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.+..+|.+...+ . .|+|++.-.++..... ....+++++.+.|+|||+++++-+
T Consensus 237 ~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 237 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 67899999988633 2 4999997655542111 124789999999999999987653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-08 Score=85.14 Aligned_cols=98 Identities=19% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------C-CcEEEeCCCCCCCC------C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------P-GVTHIGGDMFKSIP------A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~-~i~~~~~d~~~~~p------~-~D~ 159 (254)
.++.+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ . +++++.+|+++..+ . .|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 357899999999999999999874 346 999999 8888776643 2 68999999977532 2 399
Q ss_pred EEecccc--------ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVL--------TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vl--------h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.-.. +.. .....+++.++.+.|+|||.|++...
T Consensus 297 Ii~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGA-CRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EEECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9985321 111 14567899999999999999988653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=76.65 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=63.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~- 156 (254)
+.+.+++..+ ..++.+|||||||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 4566777774 777889999999999999999998 346 999999 8888776653 6899999999985 555
Q ss_pred -ccEEEeccccc
Q 025363 157 -ADAIFMKWVLT 167 (254)
Q Consensus 157 -~D~v~~~~vlh 167 (254)
.|+|+++...+
T Consensus 114 ~fD~Iv~NlPy~ 125 (295)
T 3gru_A 114 DFNKVVANLPYQ 125 (295)
T ss_dssp CCSEEEEECCGG
T ss_pred CccEEEEeCccc
Confidence 39988765443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=78.03 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCeEEEecCcccHHHHHHHHH-----------------cCCCCeEEEeech-----------H-HHhhC----CCCCCcE
Q 025363 98 VKRLVDVGGSAGDCLRMILQK-----------------HRFICEGINFDLP-----------E-VVAEA----PSIPGVT 144 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~-----------------~~~~~~~~~~D~~-----------~-~~~~~----~~~~~i~ 144 (254)
..+|+|+||++|..+..+... .|..+ ++.-|+| + +.+.. ....+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence 688999999999999887776 35556 7777877 1 11111 0111223
Q ss_pred E---EeCCCCCC-CCCc--cEEEeccccccCCHH-------------------------HH------------HHHHHHH
Q 025363 145 H---IGGDMFKS-IPAA--DAIFMKWVLTTWTDD-------------------------EC------------KLIMENC 181 (254)
Q Consensus 145 ~---~~~d~~~~-~p~~--D~v~~~~vlh~~~~~-------------------------~~------------~~il~~~ 181 (254)
| +.++|... +|.. |+|+.+.+||-.++. .+ ..+|+..
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 55677666 6765 999999999944321 11 1237888
Q ss_pred HHhCCCCCEEEEEccccCCC--CCChhhhhhcccchHhhhhc--------cccCceecCHHHHHHHHHhCC-CCeeeEE
Q 025363 182 YKALPAGGKLIACEPVLPDD--SNESQRTRALLEGDIFVMTI--------YRAKGNHRTEQEFKQLGFFAG-FPHLRLY 249 (254)
Q Consensus 182 ~~~L~pgG~l~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~ 249 (254)
++.|+|||++++.-....+. ...........+.++....+ ....-..++.+|++++++++| |++..+.
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999999999876554432 10000001111111111100 000112368999999999985 7776654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.2e-08 Score=88.28 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC---CC-ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI---PA-ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~---p~-~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++.. ..+ ++.+|+ +.+++.++++ .+++++.+|+++.+ .. .|+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 47899999999999999988753 235 899999 8888877653 37999999998752 23 3999984
Q ss_pred cccc--------cCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 164 WVLT--------TWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 164 ~vlh--------~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
--.. .+. .....++++.+.++|+|||+|++...
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3211 111 24567899999999999999997554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.6e-07 Score=75.42 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=88.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHH----------------cCCCCeEEEeechH-HHh----hCCC---CCC---cEEEeC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQK----------------HRFICEGINFDLPE-VVA----EAPS---IPG---VTHIGG 148 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~----------------~~~~~~~~~~D~~~-~~~----~~~~---~~~---i~~~~~ 148 (254)
+...+|+|+||++|..+..+... .|..+ ++.-|+|. ... .... ..+ +.-+.+
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~-v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE-EEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence 34578999999999866544433 34455 77778852 111 1111 012 233567
Q ss_pred CCCCC-CCCc--cEEEeccccccCCH-------------------------------HHHHHHHHHHHHhCCCCCEEEEE
Q 025363 149 DMFKS-IPAA--DAIFMKWVLTTWTD-------------------------------DECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 149 d~~~~-~p~~--D~v~~~~vlh~~~~-------------------------------~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+|... +|.. |+++.+.+||-.++ .+-..+|+..++.|+|||++++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 78776 7765 99999999995432 12345699999999999999886
Q ss_pred ccccCCCCC-C-----hhhhhhcccchHhhhhcc--------ccCceecCHHHHHHHHHhCCC-CeeeEE
Q 025363 195 EPVLPDDSN-E-----SQRTRALLEGDIFVMTIY--------RAKGNHRTEQEFKQLGFFAGF-PHLRLY 249 (254)
Q Consensus 195 d~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~--------~~~~~~~t~~e~~~ll~~aGf-~~~~~~ 249 (254)
-....+... . -+......+.++....+. ...-..++.+|+++++++.|. ++..+.
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 554433210 0 011011111111111100 001123589999999999965 665543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-07 Score=73.23 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=63.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-CCCc--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPAA-- 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~p~~-- 157 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++ +..+ ++++|+ +.+++.+++. .+++++.+|+.+. +++.
T Consensus 19 i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 95 (249)
T 3ftd_A 19 VLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGK 95 (249)
T ss_dssp HHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCS
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccC
Confidence 4556777774 677889999999999999999987 3456 999999 8888877664 5789999999875 4431
Q ss_pred cEEEeccccccCC
Q 025363 158 DAIFMKWVLTTWT 170 (254)
Q Consensus 158 D~v~~~~vlh~~~ 170 (254)
+.+++.+.-++.+
T Consensus 96 ~~~vv~NlPy~i~ 108 (249)
T 3ftd_A 96 ELKVVGNLPYNVA 108 (249)
T ss_dssp SEEEEEECCTTTH
T ss_pred CcEEEEECchhcc
Confidence 4555555555443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=81.31 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-- 155 (254)
.+.+++.++ ..+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++.+ .+++|+.+|+.+.++
T Consensus 275 ~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~ 350 (433)
T 1uwv_A 275 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 (433)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh
Confidence 344555553 566789999999999999999988 456 999999 8888877653 479999999988532
Q ss_pred ----C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 ----A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ----~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
. .|+|++.---.. +.++++.+.+ ++|++.+++
T Consensus 351 ~~~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 351 PWAKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp GGGTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEE
T ss_pred hhhcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEE
Confidence 1 399998432221 2245555554 688877766
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-07 Score=74.42 Aligned_cols=91 Identities=9% Similarity=0.005 Sum_probs=65.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~-- 156 (254)
+.+.+++..+ ..++ +|||||||+|.++..++++. .+ ++++|+ +.+++.+++. .+++++.+|+.+. +++
T Consensus 35 i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~ 109 (271)
T 3fut_A 35 HLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVP 109 (271)
T ss_dssp HHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSC
T ss_pred HHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhcc
Confidence 3455666664 6777 99999999999999999985 56 999998 8887766543 5799999999875 543
Q ss_pred c-cEEEeccccccCCHHHHHHHHHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMEN 180 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~ 180 (254)
. |.|+. +.-++++.+-..++|..
T Consensus 110 ~~~~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 110 QGSLLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp TTEEEEE-EECSSCCHHHHHHHHHH
T ss_pred CccEEEe-cCcccccHHHHHHHhcC
Confidence 2 66554 44445565545555544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-07 Score=78.06 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=68.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~v~~~~vlh 167 (254)
.++.+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ . ++|+.+|+.+..+. .|+|++.-.-.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 35679999999999999999987 346 999999 8888887654 3 89999999887554 49999854322
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
... ..+++.++ .|+|||.+++.
T Consensus 365 g~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CSC----HHHHHHHH-HHCCSEEEEEE
T ss_pred chH----HHHHHHHH-hcCCCcEEEEE
Confidence 221 23555554 48999998885
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=76.90 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=74.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------CCCcEEEeCCCCCCCCC----ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIPA----ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~~~i~~~~~d~~~~~p~----~D~ 159 (254)
+..++||-||+|.|..+.++++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+.+.. .|+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4568999999999999999998766666 999999 888876653 27999999999987432 299
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++-.. .-.... -...+++.|+++|+|||.++..-
T Consensus 161 Ii~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 161 IISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 987322 111100 12478999999999999998753
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-07 Score=84.59 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=79.0
Q ss_pred ccccccCchHHHHHHHHHhcCCchhHHHHHhhcC---CCCCCCeEEEecCcccHHHHHHHHHcC----CCCeEEEeechH
Q 025363 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYN---GFKGVKRLVDVGGSAGDCLRMILQKHR----FICEGINFDLPE 132 (254)
Q Consensus 60 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~~D~~~ 132 (254)
||-+++|+-.-..|.+++.. .+.+..+ .......|+|||||+|-++...+++.. +++ +.+++..+
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp 395 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNP 395 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCH
Confidence 66677788776777776643 1222221 123346799999999999555555432 235 78888733
Q ss_pred HHhhCCCC-------CCcEEEeCCCCCC-CCCc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 133 VVAEAPSI-------PGVTHIGGDMFKS-IPAA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 133 ~~~~~~~~-------~~i~~~~~d~~~~-~p~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
+...+++. ++|+++.+|+.+- +|+. |+||.-..=...-.|....+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 43333321 7899999999986 7875 99997332111111333467888889999999753
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-07 Score=73.98 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=62.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~- 156 (254)
+.+.+++..+ ..++.+|||||||+|.++. +. +.+..+ ++++|+ +.+++.+++. ++++++.+|+.+. +++
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 4556677664 6778899999999999999 54 555656 899999 8888887664 4799999999874 332
Q ss_pred -----ccEEEeccccccCCHHHHHHHH
Q 025363 157 -----ADAIFMKWVLTTWTDDECKLIM 178 (254)
Q Consensus 157 -----~D~v~~~~vlh~~~~~~~~~il 178 (254)
.+.+++.+.-.+.+.+-..+++
T Consensus 85 ~~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred hcccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444544444433333333
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=70.04 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeech-HHHhhCCCC----CCcEEEeCCCCC-CCCC--c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVAEAPSI----PGVTHIGGDMFK-SIPA--A 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~-~~~~~~~~~----~~i~~~~~d~~~-~~p~--~ 157 (254)
.++.+.. .+++..+|||+|||+|.++..++++.+-.. +.++|+. .+....... .++.....++.. .++. .
T Consensus 64 ~ei~ek~-~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~-v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERG-YVKLEGRVIDLGCGRGGWCYYAAAQKEVSG-VKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTT-SSCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhC-CCCCCCEEEEecCCCCHHHHHHHHhcCCCc-ceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 3455554 477888999999999999998887754434 5556652 221111111 134444444322 2333 3
Q ss_pred cEEEeccccc---cCCHH-HHHHHHHHHHHhCCCC-CEEEE
Q 025363 158 DAIFMKWVLT---TWTDD-ECKLIMENCYKALPAG-GKLIA 193 (254)
Q Consensus 158 D~v~~~~vlh---~~~~~-~~~~il~~~~~~L~pg-G~l~i 193 (254)
|+|++....+ .+-|. ....+|+.+.+.|+|| |.+++
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999876555 12222 2335689999999999 99888
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=76.41 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=55.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~ 153 (254)
.+.+++..+ ..++.+|||||||+|.++..++++.+. .+ ++++|+ +.+++.+++. .+++++.+|+.+.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 455666664 677889999999999999999998765 67 899999 8888877654 6899999999875
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=71.93 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=102.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------------------------CCCcEEEeC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------------------------IPGVTHIGG 148 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------------------------~~~i~~~~~ 148 (254)
.+...|+.+|||.......+...+++++ ++-+|.|++++.-++ .+++.++..
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 3568999999999999999998888877 888898887654321 157899999
Q ss_pred CCCCC-C--------C--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH
Q 025363 149 DMFKS-I--------P--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI 216 (254)
Q Consensus 149 d~~~~-~--------p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~ 216 (254)
|+.+. . + .. .++++-.+|..++.+++.++++.+.+.. |+|.+++.|.+.+..+...........+.-
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~ 253 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKE 253 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhc
Confidence 99873 2 1 22 7888999999999999999999999987 788888889877632221111100000000
Q ss_pred hhhhccccC-ceecCHHHHHHHHHhCCCC
Q 025363 217 FVMTIYRAK-GNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 217 ~~~~~~~~~-~~~~t~~e~~~ll~~aGf~ 244 (254)
. ......+ ....+.++..+.|+++||+
T Consensus 254 ~-rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 S-RNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp H-HCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred c-cCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 0000111 1235889999999999997
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.7e-07 Score=72.18 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS 153 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~ 153 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+.
T Consensus 17 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 17 VLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 4556677774 7778899999999999999999885 46 999999 8888776543 6899999999885
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.9e-07 Score=73.14 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=62.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~ 154 (254)
+.+.+++.++ ..++.+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++ .+++++.+|+.+. +
T Consensus 14 Ll~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 14 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 91 (301)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 4556666664 67788999999999999999999998778 999999 8888877643 5899999998653 1
Q ss_pred C-----CccEEEecc
Q 025363 155 P-----AADAIFMKW 164 (254)
Q Consensus 155 p-----~~D~v~~~~ 164 (254)
+ ..|.|++.-
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 1 238888643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=78.09 Aligned_cols=111 Identities=12% Similarity=-0.009 Sum_probs=77.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc------------------------------------------CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH------------------------------------------RF 121 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------~~ 121 (254)
++..++... .|.++..|+|.+||+|.++++.+... +.
T Consensus 178 LAa~ll~~~-~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRS-GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHT-TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhh-CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 455566666 48888999999999999999877652 23
Q ss_pred CCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC----CccEEEec--cccccCCHHHHHHHHHHHHHh--
Q 025363 122 ICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP----AADAIFMK--WVLTTWTDDECKLIMENCYKA-- 184 (254)
Q Consensus 122 ~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p----~~D~v~~~--~vlh~~~~~~~~~il~~~~~~-- 184 (254)
.+ ++++|+ +.+++.++.+ +.|+|..+|+.+. .| ..|+|+++ +-...-..++...+.+.+.+.
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 257 SH-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CC-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred cc-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 57 999999 8898887754 4589999999875 23 23999986 322222234445555555444
Q ss_pred -CCCCCEEEEEcc
Q 025363 185 -LPAGGKLIACEP 196 (254)
Q Consensus 185 -L~pgG~l~i~d~ 196 (254)
+.|||++++...
T Consensus 336 ~~~~g~~~~ilt~ 348 (703)
T 3v97_A 336 NQFGGWNLSLFSA 348 (703)
T ss_dssp HHCTTCEEEEEES
T ss_pred hhCCCCeEEEEeC
Confidence 458999988743
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-06 Score=69.91 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=73.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC----
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---- 155 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---- 155 (254)
++..++ ..++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+|+++.+|+.+..+
T Consensus 94 ~~~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 94 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc
Confidence 344443 6678899999999999999999986 4567 999999 8777766543 579999999876421
Q ss_pred -C-ccEEEec------ccccc---------CCHHH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 -A-ADAIFMK------WVLTT---------WTDDE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 -~-~D~v~~~------~vlh~---------~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. .|.|++. .++.. |+.++ -.++|+++.+.++ ||+|+.....+.
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 1 3998861 12221 11111 1357888888886 999888665543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=77.89 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=77.4
Q ss_pred ccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-------------CCCCeEE
Q 025363 60 YSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-------------RFICEGI 126 (254)
Q Consensus 60 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------~~~~~~~ 126 (254)
||-+.+|+..-..|.+++... +.+.++.-.....|||||||+|.++...+++. ...+ ++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-Vy 450 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-LY 450 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-EE
T ss_pred HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-EE
Confidence 555667777666777766542 11222111235689999999999975443332 1235 88
Q ss_pred Eeec-hHHHhhCCC------CCCcEEEeCCCCCC-C------CC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEE
Q 025363 127 NFDL-PEVVAEAPS------IPGVTHIGGDMFKS-I------PA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKL 191 (254)
Q Consensus 127 ~~D~-~~~~~~~~~------~~~i~~~~~d~~~~-~------p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l 191 (254)
+++. |......+. .++|+++.+|+.+- . |+ .|+|+.-..=.....+-....|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8887 543322221 16799999999876 6 55 49999755422112233456778888999999975
Q ss_pred E
Q 025363 192 I 192 (254)
Q Consensus 192 ~ 192 (254)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=68.62 Aligned_cols=99 Identities=9% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-h-------HHHhhCCCC-------CCcEEEeCCCCCC---CC-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-P-------EVVAEAPSI-------PGVTHIGGDMFKS---IP- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~-------~~~~~~~~~-------~~i~~~~~d~~~~---~p- 155 (254)
..++.+|||+|||+|..+..+++. +.+ ++++|+ + .+++.++.+ ++|+++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 445689999999999999999986 467 999999 8 777777653 4699999999764 23
Q ss_pred --C-ccEEEeccccccCC------------------HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 --A-ADAIFMKWVLTTWT------------------DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 --~-~D~v~~~~vlh~~~------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|+|++.-.+++-. +.+...+++.+.++.+ .++++-.+..
T Consensus 158 ~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred cCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 3 49999865444321 1234556667777764 3666655443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-06 Score=68.04 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=68.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCC-cEEEeC-CCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPG-VTHIGG-DMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~-i~~~~~-d~~~~~p~- 156 (254)
..++.+.+ .+.+..+|||+|||+|.++...++..+-.. ++++|+ ..+...... ..+ +.+... |+....+.
T Consensus 79 L~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 45566777 488889999999999999999887765545 777777 332212111 112 233322 43322233
Q ss_pred ccEEEeccccc----cCCHHHHHHHHHHHHHhCCCC--CEEEEE
Q 025363 157 ADAIFMKWVLT----TWTDDECKLIMENCYKALPAG--GKLIAC 194 (254)
Q Consensus 157 ~D~v~~~~vlh----~~~~~~~~~il~~~~~~L~pg--G~l~i~ 194 (254)
.|+|++-...+ .........+|+-+.+.|+|| |.+++-
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 49999866655 111122335788889999999 998873
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-06 Score=72.69 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=67.7
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC---C
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI---P 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~---p 155 (254)
..+++..+ .. +.+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ ++++|+.+|+.+.. +
T Consensus 204 ~~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~ 278 (369)
T 3bt7_A 204 EWALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 278 (369)
T ss_dssp HHHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred HHHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence 33444443 33 4689999999999999988753 35 999999 8888877653 57999999986542 1
Q ss_pred ----------------CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 ----------------AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ----------------~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..|+|++.---. .+.+++.+.|+|+|+++++..
T Consensus 279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 279 GVREFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp SCCCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred hccccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 239988732211 123456666778999888654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-06 Score=73.17 Aligned_cols=92 Identities=9% Similarity=-0.090 Sum_probs=70.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------------------CCcEEEeCCCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------------PGVTHIGGDMFKSI 154 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------------~~i~~~~~d~~~~~ 154 (254)
++.+|||+|||+|..+..++++.+..+ ++.+|+ +..++.++++ .+++++.+|+.+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 367999999999999999999988778 999999 7776655532 13888999986642
Q ss_pred ---CC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 155 ---PA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 155 ---p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. .|+|++.- .. ....++..+.+.|+|||.|++.-
T Consensus 126 ~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 33 39988632 22 12478999999999999877753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-06 Score=74.97 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=76.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC------------------CCCeEEEeec-hHHHhhCCCC----
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR------------------FICEGINFDL-PEVVAEAPSI---- 140 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~------------------~~~~~~~~D~-~~~~~~~~~~---- 140 (254)
+++.+++..+ ..++.+|+|.+||+|.++..+.+... ... ++++|+ +.+.+.++.+
T Consensus 157 iv~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 157 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHh
Confidence 3444566664 55678999999999999998887632 236 899998 7776655431
Q ss_pred --CC-----cEEEeCCCCCCC--C--CccEEEeccccccCC------------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 --PG-----VTHIGGDMFKSI--P--AADAIFMKWVLTTWT------------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 --~~-----i~~~~~d~~~~~--p--~~D~v~~~~vlh~~~------------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.. +.+..+|.+... + ..|+|+++--+.... ...-..++.++.+.|+|||++.++-
T Consensus 235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 32 788999988752 2 249999864443211 1122478999999999999988864
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=65.06 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=68.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCC-Cc--cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP-AA--DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p-~~--D~v~~~~vlh~~~~ 171 (254)
++++.++||+||++|.++..++++ +.+ ++++|..++.......++|+++.+|.++..| .. |+|++-.+.+ .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence 467899999999999999999988 567 9999985554444445899999999999844 33 9998866653 3
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 172 DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.....++.+.......++.++....
T Consensus 283 ~~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 283 AKVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HHhHHHHHHHHhccccceEEEEEEe
Confidence 4444555554444444555554443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-06 Score=75.18 Aligned_cols=93 Identities=11% Similarity=-0.023 Sum_probs=70.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC-------CC-cEEEeCCCCCCC----CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-------PG-VTHIGGDMFKSI----PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-------~~-i~~~~~d~~~~~----p~-~D~v 160 (254)
.++.+|||++||+|..+..++++.++ .+ ++.+|+ +..++.++++ ++ ++++.+|.++.. +. .|+|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~-V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V 129 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEK-AYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYV 129 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence 34689999999999999999998655 35 899999 8777776653 34 899999986543 22 3999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++.- .. ....+++.+.+.|+|||.|++.-
T Consensus 130 ~lDP-~g-----~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 130 DLDP-FG-----TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECC-Cc-----CHHHHHHHHHHHhCCCCEEEEEe
Confidence 8854 21 11368899999999999877754
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=59.31 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeechHHHhhCC-----------------------------CCCCcEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDLPEVVAEAP-----------------------------SIPGVTHI 146 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~-----------------------------~~~~i~~~ 146 (254)
+...|+-+|||.-.....+... .++++ .+-+|.|++++.-+ ...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~-~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSE-EEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCe-EEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999999999998875 35667 88889888766321 12578899
Q ss_pred eCCCCCC--C---------C-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhccc
Q 025363 147 GGDMFKS--I---------P-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLE 213 (254)
Q Consensus 147 ~~d~~~~--~---------p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~ 213 (254)
..|+.+. + + .. -++++-.+|..++.+++..+|+.+.+... +|.+++.|...+.. +. ...+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d---~f-g~~M~- 242 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD---RF-GQIMI- 242 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS---HH-HHHHH-
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC---HH-HHHHH-
Confidence 9999762 2 1 12 57888889999999999999999999875 56666778875533 11 11100
Q ss_pred chHhhhhccccC-ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 214 GDIFVMTIYRAK-GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 214 ~~~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
-.+......+.+ ....+.++..+.|+++||+.+++.++
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 001000000011 12347888999999999998777654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-05 Score=61.17 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----C-CCcEEEeC-CCCCCCCC-cc
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----I-PGVTHIGG-DMFKSIPA-AD 158 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~-~~i~~~~~-d~~~~~p~-~D 158 (254)
++.+. .-+.++.+|||+||++|.++..+++..+-.. ++++|+ ..+...... . +-+.+..+ |++...+. .|
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 33444 3467889999999999999999998755445 677777 222111110 0 11333333 44332333 49
Q ss_pred EEEeccccc----cCCHHHHHHHHHHHHHhCCCC-CEEEEE
Q 025363 159 AIFMKWVLT----TWTDDECKLIMENCYKALPAG-GKLIAC 194 (254)
Q Consensus 159 ~v~~~~vlh----~~~~~~~~~il~~~~~~L~pg-G~l~i~ 194 (254)
+|++.-.-+ .........+|+-+.+.|+|| |.+++-
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 999855544 111112245688889999999 998874
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1e-05 Score=68.34 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------------CCcEEEeCCCCCCCC------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------------PGVTHIGGDMFKSIP------ 155 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------------~~i~~~~~d~~~~~p------ 155 (254)
+.++||=||+|.|..+.++++. |..+ ++.+|+ |.+++.+++. +|++++.+|..+.+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4679999999999999999975 4456 999999 8888776531 568999999876531
Q ss_pred -CccEEEeccccc-------cCC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 156 -AADAIFMKWVLT-------TWT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 156 -~~D~v~~~~vlh-------~~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
..|+|++--.-. ..+ ..-..++++.++++|+|||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 139998742110 000 112357899999999999998774
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=67.60 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=67.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC---CCCeEEEeec-hHHHhhC--C----C------CCCcEEEeCCCCCC--CC-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR---FICEGINFDL-PEVVAEA--P----S------IPGVTHIGGDMFKS--IP- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~---~~~~~~~~D~-~~~~~~~--~----~------~~~i~~~~~d~~~~--~p- 155 (254)
+.++.+|+|.|||+|.++..+++..+ ..+ ++++|+ +.+++.+ + . .....+...|+.+. .+
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence 34578999999999999999999876 346 899998 7666555 1 1 02235666666653 12
Q ss_pred -CccEEEecccc--ccCCHHH-------------------------HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 -AADAIFMKWVL--TTWTDDE-------------------------CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 -~~D~v~~~~vl--h~~~~~~-------------------------~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..|+|+++=-. ....+.. ...+++++.+.|+|||++.++-+
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 23999984333 1111111 23478889999999999887543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=57.52 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=73.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHH-Hh-----hCCCCCCcEEEeC-CCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VA-----EAPSIPGVTHIGG-DMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~-~~-----~~~~~~~i~~~~~-d~~~~~p~- 156 (254)
...+.+.+ .+.+..+|||+||++|.++...+....-.+ +.++|+... .+ +..-.+.|+|..+ |++.-.|.
T Consensus 67 L~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 45677777 588899999999999999998888765556 899998322 11 1111277999999 97655443
Q ss_pred ccEEEeccccccCC---HH-HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTTWT---DD-ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~~~---~~-~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.|+++|--.=..=+ ++ ...++|+-+.+.|++ |-+++ ....+
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~p 189 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNP 189 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCC
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccC
Confidence 49998843322111 11 223477777899998 67666 43333
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=71.28 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=71.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC---------------CCCeEEEeec-hHHHhhCCCC-------
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR---------------FICEGINFDL-PEVVAEAPSI------- 140 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~---------------~~~~~~~~D~-~~~~~~~~~~------- 140 (254)
+++-+++.+. ..+ .+|+|.+||+|.++..+++... ... +.++|+ +.+...++.+
T Consensus 233 Vv~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~ 309 (544)
T 3khk_A 233 IVTLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGID 309 (544)
T ss_dssp HHHHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3455556554 333 3999999999999988765432 345 899998 7776665532
Q ss_pred CCcEEEeCCCCCC--CCC--ccEEEeccccc--cCCHH-------------------------HHHHHHHHHHHhCCCCC
Q 025363 141 PGVTHIGGDMFKS--IPA--ADAIFMKWVLT--TWTDD-------------------------ECKLIMENCYKALPAGG 189 (254)
Q Consensus 141 ~~i~~~~~d~~~~--~p~--~D~v~~~~vlh--~~~~~-------------------------~~~~il~~~~~~L~pgG 189 (254)
.++.+..+|.+.. .+. .|+|+++=-+. .|..+ .-..+++++.+.|+|||
T Consensus 310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 389 (544)
T 3khk_A 310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG 389 (544)
T ss_dssp CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence 3355578888765 222 39999843322 23211 11258999999999999
Q ss_pred EEEEEc
Q 025363 190 KLIACE 195 (254)
Q Consensus 190 ~l~i~d 195 (254)
++.++-
T Consensus 390 r~aiVl 395 (544)
T 3khk_A 390 SMALLL 395 (544)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 987753
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0001 Score=58.55 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH--cCCCC-eEEEeechHHHhhCCCC-CCc---EEEeC-CCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK--HRFIC-EGINFDLPEVVAEAPSI-PGV---THIGG-DMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~--~~~~~-~~~~~D~~~~~~~~~~~-~~i---~~~~~-d~~~~~p~ 156 (254)
..+|-+.+ -++++.+|||+||+.|.++...++. ..... ++++.|+ ++ ...... ..+ .|..+ |+++..+.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~-~P~~~~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE-EPMLMQSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC-CCCCCCSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc-CCCcccCCCceEEEeeccCCccCCCCC
Confidence 44566666 5889999999999999999998876 21111 0234442 11 111111 344 45557 99875443
Q ss_pred -ccEEEeccccc--cCCHHH--HHHHHHHHHHhCCCCC-EEEE
Q 025363 157 -ADAIFMKWVLT--TWTDDE--CKLIMENCYKALPAGG-KLIA 193 (254)
Q Consensus 157 -~D~v~~~~vlh--~~~~~~--~~~il~~~~~~L~pgG-~l~i 193 (254)
.|+|++-..=. ++.-++ ...+|.-+.+.|+||| .+++
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 59999733221 111111 2236777779999999 7777
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=63.94 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=62.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHH-------cCC-----CCeEEEeec-h---HHHhhC-----------C----------
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQK-------HRF-----ICEGINFDL-P---EVVAEA-----------P---------- 138 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~-------~~~-----~~~~~~~D~-~---~~~~~~-----------~---------- 138 (254)
.+..+|||||+|+|..+..+++. .|+ +. ++.++. | +.+..+ +
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 34679999999999999887765 564 45 788886 5 222211 0
Q ss_pred --------C--CCCcEEEeCCCCCC---CCC-----ccEEEecc-ccc----cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 139 --------S--IPGVTHIGGDMFKS---IPA-----ADAIFMKW-VLT----TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 139 --------~--~~~i~~~~~d~~~~---~p~-----~D~v~~~~-vlh----~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
. ..++++..+|+.+. .+. .|+|++-- .-. .|. .++|+.++++|+|||+|+.
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEEEEEEEE
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCCCcEEEE
Confidence 1 13467888998664 222 39988732 111 132 4789999999999999875
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.8e-05 Score=54.75 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=57.2
Q ss_pred CCCCeEEEecCccc-HHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC----CccEEEeccccccC
Q 025363 96 KGVKRLVDVGGSAG-DCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADAIFMKWVLTTW 169 (254)
Q Consensus 96 ~~~~~vlDvG~G~G-~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p----~~D~v~~~~vlh~~ 169 (254)
.+..+|||||||+| ..+..|++. .+.. +++.|+ |..++ ++..|+|++.. .+|+|...+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 44679999999999 588888764 2566 899997 55432 89999999843 359997654
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.+....+-++++.. |.-++|.-.
T Consensus 98 PP~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CCTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 3445555556666654 556666433
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=55.14 Aligned_cols=88 Identities=6% Similarity=-0.072 Sum_probs=59.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------CCCcEEEeCCCCCC-------------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------IPGVTHIGGDMFKS------------- 153 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------~~~i~~~~~d~~~~------------- 153 (254)
+..+|||||+| ..+..+++ .++.+ ++.+|. ++..+.+++ ..+|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~-VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKH-VTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCE-EEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 46799999984 56666665 44667 888887 766665543 24799999996542
Q ss_pred -----------CC--C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 -----------IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 -----------~p--~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+ . .|+|++-.-. ....+..+.+.|+|||.|++ |.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~-DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLF-DD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEE-TT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEE-eC
Confidence 12 2 3999985421 12556667799999999855 44
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.56 E-value=2e-05 Score=63.46 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=57.7
Q ss_pred HHHHHhhcCCCCCC--CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH-------HhhCCC-------C-CCcEEE
Q 025363 85 MTSVLEGYNGFKGV--KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV-------VAEAPS-------I-PGVTHI 146 (254)
Q Consensus 85 ~~~i~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~-------~~~~~~-------~-~~i~~~ 146 (254)
.+.+.+... ..++ .+|||++||+|..+..++++ +.+ ++.+|. +.+ ++.++. . .+++++
T Consensus 75 ~e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 75 GEAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp GSHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred HHHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 445556663 5566 89999999999999999998 557 999999 643 333221 1 469999
Q ss_pred eCCCCCCC---CC-ccEEEecccccc
Q 025363 147 GGDMFKSI---PA-ADAIFMKWVLTT 168 (254)
Q Consensus 147 ~~d~~~~~---p~-~D~v~~~~vlh~ 168 (254)
.+|..+.+ ++ .|+|++.-.++.
T Consensus 151 ~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 151 HASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp ESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred ECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 99987642 33 399999766654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.8e-05 Score=64.74 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=51.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC-----CccEEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-----AADAIF 161 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p-----~~D~v~ 161 (254)
.++.+|||+|||+|..+..+++. ..+ ++++|. +.+++.++.+ .+++++.+|+.+.++ ..|+|+
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 34789999999999999998877 356 999999 8888776543 469999999987522 249999
Q ss_pred e
Q 025363 162 M 162 (254)
Q Consensus 162 ~ 162 (254)
+
T Consensus 169 l 169 (410)
T 3ll7_A 169 V 169 (410)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00044 Score=55.95 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHH-Hhh---CCC--CCCcEEEeC-CCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VAE---APS--IPGVTHIGG-DMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~-~~~---~~~--~~~i~~~~~-d~~~~~p~- 156 (254)
...+.+.+ .+.+..+|||+||++|.++...+....-.. +.++|+... .+. .+. .+-|.|..+ |++.-.|.
T Consensus 83 L~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 83 LRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 45566666 478888999999999999998877765446 899997222 110 011 144888888 87655444
Q ss_pred ccEEEeccccccCC---HH-HHHHHHHHHHHhCCCC-CEEEE
Q 025363 157 ADAIFMKWVLTTWT---DD-ECKLIMENCYKALPAG-GKLIA 193 (254)
Q Consensus 157 ~D~v~~~~vlh~~~---~~-~~~~il~~~~~~L~pg-G~l~i 193 (254)
.|+|++--.=-.=+ ++ ...++|+-+.+.|++| |-+++
T Consensus 161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 49988744311111 11 1234777778999988 87776
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00023 Score=63.40 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC---CCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC-CC---C--cc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR---FICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS-IP---A--AD 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~---~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~-~p---~--~D 158 (254)
+..+|+|.+||+|.++..+++... ... +.++|+ +.+...++.+ .++.+..+|.+.. .| . .|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 567999999999999999988853 456 899998 7766655432 3578899999875 22 2 39
Q ss_pred EEEecccc-ccCCHH--------------------HHHHHHHHHHHhCC-CCCEEEEEc
Q 025363 159 AIFMKWVL-TTWTDD--------------------ECKLIMENCYKALP-AGGKLIACE 195 (254)
Q Consensus 159 ~v~~~~vl-h~~~~~--------------------~~~~il~~~~~~L~-pgG~l~i~d 195 (254)
+|+++=-+ ..|... .--.++.++.+.|+ |||++.++-
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 99974211 112100 01248999999999 999987754
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=56.84 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHc-----CCCCeEEEeec-hHH--------------------------HhhCCC-----
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKH-----RFICEGINFDL-PEV--------------------------VAEAPS----- 139 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~-----~~~~~~~~~D~-~~~--------------------------~~~~~~----- 139 (254)
...+|||+|+..|..+..+++.. ++.+ ++.+|. +.+ .+.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 46799999999999998887765 4667 888884 211 111111
Q ss_pred ---CCCcEEEeCCCCCCCCC----c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 140 ---IPGVTHIGGDMFKSIPA----A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 140 ---~~~i~~~~~d~~~~~p~----~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.++|+++.||+.+.+|. . |+|++-.-. .+.....|+.+...|+|||.+++-|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 16899999999776442 2 788775422 1345688999999999999887744
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00023 Score=60.03 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=77.3
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------CCCcEEEeCCCCCC--
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------IPGVTHIGGDMFKS-- 153 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------~~~i~~~~~d~~~~-- 153 (254)
+..++ ..++.+|||+.+|.|.=+..+++..++.. +++.|. +.-+...++ ..++.+...|....
T Consensus 141 ~~~L~-~~pg~~VLD~CAaPGGKT~~la~~~~~~~-l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 141 VLALG-LQPGDIVLDLCAAPGGKTLALLQTGCCRN-LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHHC-CCTTEEEEESSCTTCHHHHHHHHTTCEEE-EEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHHhC-CCCCCEEEEecCCccHHHHHHHHhcCCCc-EEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 34443 67889999999999999999998876666 888897 543332221 14678888887553
Q ss_pred -CCCc-cEEEe----cc-----------ccccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCCCCC
Q 025363 154 -IPAA-DAIFM----KW-----------VLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDDSN 203 (254)
Q Consensus 154 -~p~~-D~v~~----~~-----------vlh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 203 (254)
.++. |.|++ +. +...|..++. .++|+++.+.|||||+|+.....+...++
T Consensus 219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN 292 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN 292 (359)
T ss_dssp HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence 2333 88885 21 1223333332 36899999999999999988877765443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00032 Score=56.76 Aligned_cols=65 Identities=26% Similarity=0.296 Sum_probs=53.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~ 152 (254)
+.+.+++.+. ..++..+||.+||.|..+..++++ +.+ ++++|. |.+++.+++. +|+.++.+||.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 4677888884 788899999999999999999998 667 999999 8887655322 589999988854
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=76.20 Aligned_cols=141 Identities=16% Similarity=0.049 Sum_probs=65.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC-----CCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC---CCC-ccEEEe
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF-----ICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS---IPA-ADAIFM 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~-----~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~---~p~-~D~v~~ 162 (254)
.+..+|||||+|+|..+..+++.... .+ .+..|. +...+.+++. -.++....|..++ .+. +|+|++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~-yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLD-YTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEE-EEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccce-EEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEE
Confidence 45789999999999988877776542 13 566777 6666666654 1233322233222 122 499999
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
.++||.- .+..+.|++++++|||||+|++.+........ . ...+++.. . .......+.++|.++|+++|
T Consensus 1318 ~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g-~----~~~~~~~~-~---r~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1318 NCALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHPLG-E----MVGFLTSP-E---QGGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp ECC----------------------CCEEEEEEC-----------------------------------CTTTTSSTTTT
T ss_pred ccccccc--ccHHHHHHHHHHhcCCCcEEEEEecccccccc-c----cccccccc-c---ccCCcccCHHHHHHHHHhCC
Confidence 9999953 44567899999999999999998754210000 0 00000000 0 00112246678888899999
Q ss_pred CCeeeE
Q 025363 243 FPHLRL 248 (254)
Q Consensus 243 f~~~~~ 248 (254)
|+.++.
T Consensus 1387 f~~~~~ 1392 (2512)
T 2vz8_A 1387 LHLVAL 1392 (2512)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00064 Score=56.23 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=73.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCCC----------Cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSIP----------AA 157 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~p----------~~ 157 (254)
...||++|||--..+..+. .| +++ ++-+|.|.+++..++ ..+..++..|+.+.+. ..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~--~~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLD--WPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp CCEEEEETCTTCCHHHHSC--CCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCeEEEeCCCCCchhhhcc--CCCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 4579999999988866654 24 356 888898988765432 2578899999986411 11
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
=++++-.+|+.+++++...+++.+.+.+.||+.|++-.
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 46778899999999999999999999999999877744
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0029 Score=58.15 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=100.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC--------CCCeEEEeechHHHhhCCCC----------------------------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR--------FICEGINFDLPEVVAEAPSI---------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~--------~~~~~~~~D~~~~~~~~~~~---------------------------- 140 (254)
+...|+-+|||.-.....|...++ +++ ++-+|.|++++.-++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~-~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVS-FIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEE-EEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCE-EEECccHHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 467899999999999999988755 556 7778888776532110
Q ss_pred --CCcEEEeCCCCCC--C----------C-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC
Q 025363 141 --PGVTHIGGDMFKS--I----------P-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE 204 (254)
Q Consensus 141 --~~i~~~~~d~~~~--~----------p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~ 204 (254)
++..++..|+.+. + . .. -++++-.+|..++.+++.++|+.+.+ + |+|.+++.|...+..+..
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC
Confidence 3788999999873 1 1 12 46778889999999999999999986 4 688888888876643222
Q ss_pred hhhhhhcccchHhhhhccccC-ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 205 SQRTRALLEGDIFVMTIYRAK-GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+.. +.+. -.+......+.+ ....+.++..+.|+++||+.+....+
T Consensus 264 ~f~-~~m~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 PFS-KQML-AHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HHH-HHHH-HHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred hHH-HHHH-HHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 211 1110 011100000000 12247899999999999997766543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0022 Score=53.21 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=55.1
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCC
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMF 151 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~ 151 (254)
.+.+++++.+. ..++..+||..+|.|..+..++++. |+.+ ++++|. |.+++.++.. .|+.++.++|.
T Consensus 44 VLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 44 VLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp TTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred ccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 35778888884 7889999999999999999999985 6778 999999 8888877432 57777777764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0023 Score=53.72 Aligned_cols=67 Identities=6% Similarity=-0.008 Sum_probs=48.1
Q ss_pred hHHHHHhhcCCCC------CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC---CCCCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFK------GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP---SIPGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~------~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~---~~~~i~~~~~d~~~ 152 (254)
+++.|++... .. ++..|||||.|.|.++..|+++....+ ++++++ +..++..+ ..++++++.+|+++
T Consensus 40 i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 40 VYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 4555666653 33 357899999999999999998754445 888887 54444332 24789999999965
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0028 Score=51.27 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=59.1
Q ss_pred CCCCCeEEEecC------cccHHHHHHHHHcCC-CCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCC-ccEEEecc-
Q 025363 95 FKGVKRLVDVGG------SAGDCLRMILQKHRF-ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-ADAIFMKW- 164 (254)
Q Consensus 95 ~~~~~~vlDvG~------G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~-~D~v~~~~- 164 (254)
.+.+.+|||+|+ ..|.+ .+.+..|. .. ++.+|+-++... .. .++.||+.+. ... .|+|+.-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~-VVavDL~~~~sd----a~-~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTL-LVDSDLNDFVSD----AD-STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCE-EEEEESSCCBCS----SS-EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcE-EEEeeCcccccC----CC-eEEEccccccccCCCCCEEEecCC
Confidence 456899999996 66773 23334665 57 899998444322 12 4588997654 223 39988621
Q ss_pred --ccccC------CHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 165 --VLTTW------TDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 165 --vlh~~------~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.--+. +..-++.++.=+.+.|+|||.+++-
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 11111 1124678888899999999999884
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.041 Score=48.86 Aligned_cols=110 Identities=9% Similarity=-0.006 Sum_probs=69.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-------------CCCeEEEeec-hHHHhhCCCC------CCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-------------FICEGINFDL-PEVVAEAPSI------PGV 143 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-------------~~~~~~~~D~-~~~~~~~~~~------~~i 143 (254)
+++-+++.++ ..++.+|+|-+||+|.++....+... ... ..++|+ +.+...++-+ ..-
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~-i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS-IFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC-EEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh-hhhhhccHHHHHHHHHHHHhcCCccc
Confidence 4455666664 55677999999999999988765421 235 788888 6655544421 334
Q ss_pred EEEeCCCCCC-C----C--CccEEEecccccc-CCH-------------HHHHHHHHHHHHhCC-------CCCEEEEEc
Q 025363 144 THIGGDMFKS-I----P--AADAIFMKWVLTT-WTD-------------DECKLIMENCYKALP-------AGGKLIACE 195 (254)
Q Consensus 144 ~~~~~d~~~~-~----p--~~D~v~~~~vlh~-~~~-------------~~~~~il~~~~~~L~-------pgG~l~i~d 195 (254)
.+..+|.+.. . + ..|+|+.+=-+-. +.. +.....+..+.+.|| |||++.++-
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 5667787653 1 1 1399998544421 111 112356788888886 699888764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0092 Score=48.87 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=39.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS 139 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~ 139 (254)
+++.+++.+. .++..|||++||+|.++..+++. +.+ ++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~-~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRR-ALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHH
Confidence 4556666652 56789999999999999998876 346 999999 888777654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.033 Score=45.63 Aligned_cols=92 Identities=25% Similarity=0.293 Sum_probs=53.3
Q ss_pred CCCeEEEecCcccHHHHHH----HHHcCCCC-eEEEeechHHHhhC------------------CC--CCC--cEEEeCC
Q 025363 97 GVKRLVDVGGSAGDCLRMI----LQKHRFIC-EGINFDLPEVVAEA------------------PS--IPG--VTHIGGD 149 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l----~~~~~~~~-~~~~~D~~~~~~~~------------------~~--~~~--i~~~~~d 149 (254)
+.-+|+|+|=|+|...... .+..|+.+ ..+.++.. .+... .. ..+ +++.-||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3568999999999865433 34466655 13444421 01000 00 033 3466788
Q ss_pred CCCCC---CC--ccEEEecccc-----ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 150 MFKSI---PA--ADAIFMKWVL-----TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 150 ~~~~~---p~--~D~v~~~~vl-----h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+.+.+ +. .|++++--.- ..|+ ..++++++++++|||.|+-
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCCCcEEEE
Confidence 76543 32 3888873211 1243 4789999999999998753
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.089 Score=38.30 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechH-HHhhCCCCCCcEEEeCCCCCCCCC------cc--EEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVAEAPSIPGVTHIGGDMFKSIPA------AD--AIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~d~~~~~p~------~D--~v~~~~vlh~ 168 (254)
..-|||+|=|+|..=..+.+.+|+-. +.++|..- .-.... -+.=.++.||+.+.+|. .. ++..-.-.|+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~-I~vfDR~~~~hp~~~-P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~ 118 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGRE-IYVFERAVASHPDST-PPEAQLILGDIRETLPATLERFGATASLVHADLGGHN 118 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSC-EEEEESSCCCCGGGC-CCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSC
T ss_pred CCceEEecCCCChhHHHHHHhCCCCc-EEEEEeeeccCCCCC-CchHheecccHHHHHHHHHHhcCCceEEEEeecCCCC
Confidence 46799999999999999999999999 99999521 111111 13345778888766432 13 3333333343
Q ss_pred CCHHHHH----HHHHHHHHhCCCCCEEEEEccc
Q 025363 169 WTDDECK----LIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 169 ~~~~~~~----~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.++.. .+-.-+..+|.|||.++.....
T Consensus 119 --~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 119 --REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp --HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred --cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 22222 3334456678899998886665
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.079 Score=42.29 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=63.9
Q ss_pred CCeEEEecCcccHHHHHHHHH-------cCCCCeEEEeec----hHH------------------------Hhh------
Q 025363 98 VKRLVDVGGSAGDCLRMILQK-------HRFICEGINFDL----PEV------------------------VAE------ 136 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~-------~~~~~~~~~~D~----~~~------------------------~~~------ 136 (254)
...|+|+|+-.|..+..+++. .++-+ +.++|. |+. +..
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~-v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRR-IVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCC-EEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCE-EEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 568999999999988886542 34556 999992 211 000
Q ss_pred -CCC----CCCcEEEeCCCCCCCC-------C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 137 -APS----IPGVTHIGGDMFKSIP-------A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 137 -~~~----~~~i~~~~~d~~~~~p-------~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+. .++|+++.|++.+.+| . .|++++-.=. .+.....++.+...|+|||.+++-|.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 001 1679999999977643 2 2777764421 24456789999999999999988664
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.61 Score=38.29 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCeEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC-CCCCccEEEeccccccCCHHH
Q 025363 98 VKRLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK-SIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 98 ~~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~-~~p~~D~v~~~~vlh~~~~~~ 173 (254)
..+|.=||+|. +.++..+.+.....+ ++++|. ++.++.+.+..-+.-...|..+ ...++|+|++.- +...
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~-V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~ 106 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRT 106 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHH
Confidence 36888898773 334444555433226 899998 6666655443222222334433 344469988753 3345
Q ss_pred HHHHHHHHHHhCCCCCEEE
Q 025363 174 CKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~ 192 (254)
..++++++...++||..++
T Consensus 107 ~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 107 FREIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHhhccCCCcEEE
Confidence 5678899999999987544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.27 Score=39.22 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=38.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP 138 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~ 138 (254)
+++.+++.+ -.++..|||..||+|..+.+..+. +-+ ++++|+ +..++.++
T Consensus 201 l~~~~i~~~--~~~~~~vlD~f~GsGtt~~~a~~~--gr~-~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRAS--SNPNDLVLDCFMGSGTTAIVAKKL--GRN-FIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHH--CCTTCEEEESSCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHc--CCe-EEEEeCCHHHHHHHH
Confidence 466667666 256789999999999999998876 445 999999 77666554
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.4 Score=40.64 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-------CCCCeEEEeechH
Q 025363 66 IPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-------RFICEGINFDLPE 132 (254)
Q Consensus 66 ~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------~~~~~~~~~D~~~ 132 (254)
.|+....|.+.+..+ +....+.. ..+...+|+|+|+|+|.++..+++.. ..++ ++.++...
T Consensus 54 apeis~~FGe~la~~----~~~~w~~~-g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLW----SASVWKAA-DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHH----HHHHHHHT-TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCH
T ss_pred CCchHHHHHHHHHHH----HHHHHHHc-CCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCH
Confidence 366666666655542 22222333 23445689999999999999998763 2335 78888833
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=89.30 E-value=0.54 Score=40.17 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCCCCeEEEecCcccHHHHHHH-HHcCC-CCeEEEeec-hHHHhhCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMIL-QKHRF-ICEGINFDL-PEVVAEAP 138 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~-~~~~~-~~~~~~~D~-~~~~~~~~ 138 (254)
.+++..++|||++.|.++..++ +..+. .+ ++.++. |...+..+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~~~L~ 269 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINLQTLQ 269 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHH
Confidence 3678899999999999999988 56665 57 999998 76655443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=89.23 E-value=2.2 Score=35.38 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=58.3
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC------CCCCC----CC-ccEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD------MFKSI----PA-ADAI 160 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d------~~~~~----p~-~D~v 160 (254)
...++.+||-+|+|. |.++..+++.....+ +++.|. ++-.+.+++..--.++..+ +.+.+ +. .|+|
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 367788999999875 889999998864326 888886 6555554433111222211 11111 12 3887
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+-.-. . ...++...++|+|||++++.-.
T Consensus 247 id~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 247 IECTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred EECCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 74321 1 2457788899999999998654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.66 E-value=0.66 Score=37.41 Aligned_cols=97 Identities=15% Similarity=-0.006 Sum_probs=67.5
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC----CCC---ccEEEeccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS----IPA---ADAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~----~p~---~D~v~~~~v 165 (254)
...+||+=+|||.++.+.++. .-+ ++.+|. +...+..+++ .+++++..|.++. .|. .|+|++-=-
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~-~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDR-LYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSE-EEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCe-EEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 557899999999999999984 445 899998 7776666654 6799999997663 132 399998444
Q ss_pred cccCCHHHHHHHHHHHHHh--CCCCCEEEEEccccC
Q 025363 166 LTTWTDDECKLIMENCYKA--LPAGGKLIACEPVLP 199 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~--L~pgG~l~i~d~~~~ 199 (254)
...- .+..++++.+.+. +.|+|.+++-=++..
T Consensus 169 Ye~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 169 YERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CCST--THHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 4321 2445666666653 458888888655443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.62 E-value=1.1 Score=37.42 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=59.2
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCC----CCCc-cEEEec
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKS----IPAA-DAIFMK 163 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~----~p~~-D~v~~~ 163 (254)
...++.+||-+|+|. |..+..+++.....+ ++++|. ++-.+.+++..--.++.. |+.+. .+.. |+|+-.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEEC
Confidence 467789999999876 889999998864335 788886 655555443211112221 11111 1113 877643
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-. . ...++.+.++|+|||++++.-..
T Consensus 266 ~g-----~---~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 266 TG-----S---PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp SC-----C---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred CC-----C---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 22 1 24678899999999999887543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=88.40 E-value=2.5 Score=33.78 Aligned_cols=88 Identities=13% Similarity=-0.034 Sum_probs=51.1
Q ss_pred CeEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 99 KRLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 99 ~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
.+|.=||+|. +.++..+.+..++.+ ++++|. ++..+.+.+...+.....|..+....+|+|++.- ++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYK-IVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHH
Confidence 5788888874 334444555544556 888998 6555443322211112233322234459988743 445557
Q ss_pred HHHHHHHHh-CCCCCEEE
Q 025363 176 LIMENCYKA-LPAGGKLI 192 (254)
Q Consensus 176 ~il~~~~~~-L~pgG~l~ 192 (254)
.+++++... ++|+..++
T Consensus 81 ~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 81 DFIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHHTSCCCTTCEEE
T ss_pred HHHHHHHhcCCCCCCEEE
Confidence 888888888 88876544
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=88.07 E-value=2.2 Score=35.98 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=59.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC----C-------CCccEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS----I-------PAADAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~----~-------p~~D~v~~~~v 165 (254)
.+++|+-||.|.++..+.++. .+.+.++|. +...+..+.+ +...++.+|+.+. + +..|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999999884 442457888 6655544433 5677888888654 1 12388887554
Q ss_pred cccCC--------HHHHHHHHH---HHHHhCCCCCEEEEEcccc
Q 025363 166 LTTWT--------DDECKLIME---NCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 166 lh~~~--------~~~~~~il~---~~~~~L~pgG~l~i~d~~~ 198 (254)
-..|+ |+. ..++. ++.+.++| +++++|.+.
T Consensus 81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCTTC-------CHHH-HHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC--CEEEEecch
Confidence 33333 222 22333 33344567 567777654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.19 E-value=1.1 Score=33.57 Aligned_cols=91 Identities=11% Similarity=-0.025 Sum_probs=56.3
Q ss_pred CCCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---------CC-Cc-cE
Q 025363 94 GFKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---------IP-AA-DA 159 (254)
Q Consensus 94 ~~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---------~p-~~-D~ 159 (254)
...++.+||.+| +|.|..+..+++.. +.+ +++.|. ++..+.+++...-... |..+. .. .. |+
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMI-GAR-IYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEe--eCCcHHHHHHHHHHhCCCCCeE
Confidence 367788999999 46788888877765 457 888887 5555444332111111 22111 11 12 77
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
++..- .. ..++.+.+.|+|||++++.-..
T Consensus 111 vi~~~-----g~----~~~~~~~~~l~~~G~~v~~g~~ 139 (198)
T 1pqw_A 111 VLNSL-----AG----EAIQRGVQILAPGGRFIELGKK 139 (198)
T ss_dssp EEECC-----CT----HHHHHHHHTEEEEEEEEECSCG
T ss_pred EEECC-----ch----HHHHHHHHHhccCCEEEEEcCC
Confidence 77432 11 3578889999999999986543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.61 E-value=1.7 Score=36.77 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=63.5
Q ss_pred hhcCCCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CC-CCCC----CC--c
Q 025363 90 EGYNGFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DM-FKSI----PA--A 157 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~-~~~~----p~--~ 157 (254)
+.. ...++.+||-+|+|. |.++..+++.....+ ++++|. ++-++.+++.. ..++.. |+ .+.+ +. .
T Consensus 179 ~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 179 VSA-GVKPGSHVYIAGAGPVGRCAAAGARLLGAAC-VIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp HHT-TCCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred HHc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCC
Confidence 444 477889999999876 889999998864336 899986 66666665542 233322 11 1111 12 3
Q ss_pred cEEEeccccccC-C-H----HHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTTW-T-D----DECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~~-~-~----~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|+-.-.-... . + ......++.+.++|+|||++++.-..
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 888753321100 0 0 00113578889999999999876543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=1.2 Score=36.81 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=59.0
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCCC----CCccEEEecc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKSI----PAADAIFMKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~~----p~~D~v~~~~ 164 (254)
...++.+||-+|+| .|..+..+++.. +.+ +++.|. ++-.+.+++..--..+.. |+.+.+ +..|+++-..
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-GLR-VAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 46788899999976 499999999987 457 999987 666555544321112211 111101 1237766432
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. . ...++.+.++|+|+|++++.-.
T Consensus 241 g----~----~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 241 V----S----PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp C----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred C----C----HHHHHHHHHHhccCCEEEEeCC
Confidence 1 1 2567888999999999988654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=1.9 Score=36.08 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE---eCCCCC-------CCCCc-cEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI---GGDMFK-------SIPAA-DAI 160 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~---~~d~~~-------~~p~~-D~v 160 (254)
...++.+||-+|+|. |.++..+++.....+ +++.|. ++-.+.+++..--..+ ..|+.+ ..+.. |+|
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATT-VILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 467788999998764 888899998864336 888887 5555444432111111 111111 11123 887
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+-.-. . ...++.+.++|+|||++++.-...
T Consensus 258 id~~G-----~---~~~~~~~~~~l~~~G~vv~~G~~~ 287 (370)
T 4ej6_A 258 IECAG-----V---AETVKQSTRLAKAGGTVVILGVLP 287 (370)
T ss_dssp EECSC-----C---HHHHHHHHHHEEEEEEEEECSCCC
T ss_pred EECCC-----C---HHHHHHHHHHhccCCEEEEEeccC
Confidence 75321 1 246788899999999999876543
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=4.6 Score=32.61 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=48.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC----CeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI----CEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 171 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~----~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~ 171 (254)
++..|+=||||.|.....|.+.+|+. + -+++|. |.. ......+ ++.+....+ +
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ik-WvLiDPap~~-~~l~~~~----------------NV~li~~fv----d 117 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIK-WMLIDGRHHD-PILNGLR----------------DVTLVTRFV----D 117 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCE-EEEEESSCCC-GGGTTCT----------------TEEEEECCC----C
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeE-EEEEcCCcch-hhhcCCC----------------cEEEEeccC----C
Confidence 45699999999999999999998864 4 566663 110 0011112 444443332 2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+. -+++.++.+.....|+|.|.....
T Consensus 118 e~---dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 118 EE---YLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp HH---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred HH---HHHHHHHhccCCCEEEEEEecCCC
Confidence 32 245666666777899998886653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=85.81 E-value=1.2 Score=36.81 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=58.0
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCc-cEEEeccccccCC
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAA-DAIFMKWVLTTWT 170 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~-D~v~~~~vlh~~~ 170 (254)
...++.+||-+|+|. |.++..+++.. +.+ +++.+. ++-.+.+++..--.++ .|. +.+... |+|+-.-.-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g~~--- 245 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAE-VSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIPTH--- 245 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-TCE-EEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCCSC---
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCCcH---
Confidence 367888999999865 88899999876 457 888886 5544444433211222 221 122223 8887432211
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..++.+.+.|+|+|++++.-.
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEECCC
T ss_pred -----HHHHHHHHHHhcCCEEEEECC
Confidence 246788899999999998754
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.61 E-value=3.8 Score=32.59 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=49.1
Q ss_pred eEEEecCcc-cHH-HHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC-CccEEEeccccccCCHHHHH
Q 025363 100 RLVDVGGSA-GDC-LRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 100 ~vlDvG~G~-G~~-~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p-~~D~v~~~~vlh~~~~~~~~ 175 (254)
+|.=||+|. |.. +..+.+.....+ ++++|. ++..+.+++..-......|..+... .+|+|++. .+.....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 577788763 332 333333321226 888998 6555544332211111223322244 56998874 3455667
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 025363 176 LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~i 193 (254)
.+++++...++|+..++.
T Consensus 77 ~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 888899899998875544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.22 E-value=2.9 Score=34.83 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC--CCCCC---C-CCc-cEEEecccc
Q 025363 97 GVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG--DMFKS---I-PAA-DAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~--d~~~~---~-p~~-D~v~~~~vl 166 (254)
++.+||=+| |+.|.++..+++...+.+ +++.+. ++-.+.+++..--.++.. |+.+. . +.. |+|+-.-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~-Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~-- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLT-VIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT-- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSE-EEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC--
Confidence 678899988 567999999999866778 999988 655555443321111111 11111 1 123 7776422
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. ....++.+.++|+|+|++++..
T Consensus 248 ---g---~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 248 ---H---TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ---C---HHHHHHHHHHHSCTTCEEEECS
T ss_pred ---C---chhhHHHHHHHhcCCCEEEEEC
Confidence 1 1256788999999999999874
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.11 E-value=7.1 Score=28.61 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--------CCCccEEEeccccc
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--------IPAADAIFMKWVLT 167 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--------~p~~D~v~~~~vlh 167 (254)
+.+|+=+|+|. |......+.+..+.+ ++++|. ++..+.++. ..+.++.+|..+. ...+|+|+..--
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~-- 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP-- 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS--
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC--
Confidence 45788888752 333333333321456 889998 665555443 3466677777542 123488776321
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+++....++. ..+.+.|+++++..
T Consensus 115 --~~~~~~~~~~-~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 115 --HHQGNQTALE-QLQRRNYKGQIAAI 138 (183)
T ss_dssp --SHHHHHHHHH-HHHHTTCCSEEEEE
T ss_pred --ChHHHHHHHH-HHHHHCCCCEEEEE
Confidence 2344444444 45556778877763
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.01 E-value=7 Score=32.17 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=57.7
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe----CCCCCCC----C----C-cc
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG----GDMFKSI----P----A-AD 158 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~----~d~~~~~----p----~-~D 158 (254)
...++.+||-+|+|. |..+..+++.. +.+ +++.|. ++-.+.+++..--..+. .|+.+.+ + . .|
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCC
Confidence 367788999999764 88888888876 567 888886 65555544331111221 1111111 1 2 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+|+-.-. . ...++...++|+|+|++++.-.
T Consensus 243 ~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 243 VTIDCSG-----N---EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEEECSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEECCC-----C---HHHHHHHHHHHhcCCEEEEEec
Confidence 8774321 1 2357788899999999998754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.75 E-value=3.8 Score=34.21 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=62.2
Q ss_pred HhhcCCCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC-----CCCCC----CCC-
Q 025363 89 LEGYNGFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG-----DMFKS----IPA- 156 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~-----d~~~~----~p~- 156 (254)
.+.. ..+++.+||=+|+| .|.++..+++.....+ ++++|. ++-++.+++..--.++.. |+.+. .+.
T Consensus 186 ~~~~-~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 186 WNTA-KVEPGSNVAIFGLGTVGLAVAEGAKTAGASR-IIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp HTTT-CCCTTCCEEEECCSHHHHHHHHHHHHHTCSC-EEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred Hhhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCC
Confidence 3444 47788899999976 5888999998874447 899986 666666655422122211 11110 112
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCC-CEEEEEccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAG-GKLIACEPV 197 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pg-G~l~i~d~~ 197 (254)
.|+|+-.-. . ...++.+.++|+|| |++++.-..
T Consensus 264 ~D~vid~~g-----~---~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 264 VDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp BSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCEEEECCC-----C---HHHHHHHHHHhhccCCEEEEEccc
Confidence 388775321 1 24678899999997 999987653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=83.86 E-value=1.6 Score=36.20 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=47.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCC----C--CccEEEeccccccC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSI----P--AADAIFMKWVLTTW 169 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~----p--~~D~v~~~~vlh~~ 169 (254)
..+++|+-||.|.++..+.++.-..+.+..+|. +..++..+.+ +...++.+|+.+.. + ..|+++..---..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 358999999999999999988422232677788 6666555443 45567788886642 2 24998886543333
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=83.73 E-value=9.7 Score=27.08 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=51.5
Q ss_pred CCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-------CCCccEEEecccc
Q 025363 96 KGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-------IPAADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-------~p~~D~v~~~~vl 166 (254)
.+..+|+=+|+|. |......+... +.+ ++++|. ++..+.++....+.++.+|..+. ...+|+|+..--
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~-V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~- 93 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHS-VVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN- 93 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS-
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCe-EEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC-
Confidence 3467899998753 44444444443 456 889998 77666665223466677776442 122488776432
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+......+..+.+.+.|..+++.
T Consensus 94 ----~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 94 ----DDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ----CHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ----CcHHHHHHHHHHHHHCCCCeEEE
Confidence 23333444445555566666555
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=1.4 Score=36.43 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC--CCCCC----CC-c-cEEEecc
Q 025363 95 FKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD--MFKSI----PA-A-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d--~~~~~----p~-~-D~v~~~~ 164 (254)
..++.+||-+|+|. |.++..+++.....+ ++++|. ++-.+.+++..--.++..+ +.+.+ +. . |+|+-.-
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~-Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAAR-VIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCE-EEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence 56788999998764 889999999876677 999987 6655555543211222211 11111 11 2 7777422
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. . ...++.+.++|+|+|++++.-..
T Consensus 248 G-----~---~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 248 G-----A---QSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp C-----C---HHHHHHHHHHEEEEEEEEECSCC
T ss_pred C-----C---HHHHHHHHHHHhcCCEEEEECCC
Confidence 1 1 24678899999999999987643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=4.8 Score=34.28 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEecccccc
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~ 168 (254)
..+|+=+|+|. |......+... +.. ++++|. ++.++.++. ..+.++.||..+. + ..+|++++.--
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g~~-vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~--- 77 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-GVK-MVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAID--- 77 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCC-EEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCS---
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCC---
Confidence 35688888763 44444444432 567 999998 777776654 4577888999875 2 23587766331
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+++.... +-...+.+.|..++++-
T Consensus 78 -~~~~n~~-i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 78 -DPQTNLQ-LTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp -SHHHHHH-HHHHHHHHCTTCEEEEE
T ss_pred -ChHHHHH-HHHHHHHhCCCCeEEEE
Confidence 2344444 44455556788777663
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.69 E-value=4.8 Score=33.87 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=60.9
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC----CC----C-Cc-cEEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK----SI----P-AA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~----~~----p-~~-D~v~ 161 (254)
..+++.+||-+|+|. |.++.++++.....+ +++.|. ++-++.+++.. .+.+..+-.+ .+ + .. |+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~-Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAV-VIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCe-EEEEcCCHHHHHHHHHcC-CcEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 477888999999764 889999999874335 888887 66555554432 2332211111 11 1 23 8887
Q ss_pred ecccc----------ccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 162 MKWVL----------TTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 162 ~~~vl----------h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-.-.- |+-. ....++.+.++|++||++++.-..
T Consensus 260 d~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~G~~ 302 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEA---PATVLNSLMQVTRVAGKIGIPGLY 302 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBC---TTHHHHHHHHHEEEEEEEEECSCC
T ss_pred ECCCCcccccccccccccc---hHHHHHHHHHHHhcCCEEEEeccc
Confidence 53321 1111 124678889999999999886543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=81.91 E-value=9.5 Score=26.63 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEecccccc
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~ 168 (254)
..+|+=+|+|. |......+... +.. ++++|. ++.++.+++ ..+.++.+|..++ + ..+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~-v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIP-LVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCC-EEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 35788888863 44444444332 457 999998 777666554 4678888998765 2 22488776321
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++.....+.. ..+.+.|+.+++.
T Consensus 81 -~~~~n~~~~~-~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGEIVA-SARAKNPDIEIIA 103 (140)
T ss_dssp -CHHHHHHHHH-HHHHHCSSSEEEE
T ss_pred -ChHHHHHHHH-HHHHHCCCCeEEE
Confidence 2334444444 4455677777665
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.87 E-value=9.3 Score=28.97 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=51.8
Q ss_pred eEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEeccccccC
Q 025363 100 RLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTTW 169 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~~ 169 (254)
+|+=+|+ |..+..+++.. .+.. ++++|. ++.++...+...+.++.+|..+. + ..+|++++.-
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----- 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYG-VVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT----- 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----
Confidence 5666775 55555555543 2557 899998 66665533324678899998775 2 2358887632
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+++....++....+.+.|..+++.
T Consensus 74 ~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 223334455555566666777655
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=81.60 E-value=6.6 Score=32.48 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=59.2
Q ss_pred hhcCCCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEe-----CCCCCC----C-C
Q 025363 90 EGYNGFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIG-----GDMFKS----I-P 155 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~-----~d~~~~----~-p 155 (254)
+.. ...++.+||=+|+|. |.++.++++....-+ +++.|. ++-.+.+++. .-+.+.. .|+.+. . +
T Consensus 173 ~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 173 QRA-GVRLGDPVLICGAGPIGLITMLCAKAAGACP-LVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp HHH-TCCTTCCEEEECCSHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred HHc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 444 477888999998764 889999998875445 777876 5544443322 1222221 111111 1 2
Q ss_pred Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.. |+|+-.-. . ...++.+.++|+|||++++.-.
T Consensus 251 ~g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 251 IEPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEcc
Confidence 23 88775321 1 2457888899999999998754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=80.84 E-value=8.8 Score=31.45 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC-CC--------CCc-cEEE
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK-SI--------PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~-~~--------p~~-D~v~ 161 (254)
.. ++.+||-+|+| .|..+..+++.....+ +++.+. ++-.+.+++. --.++ |..+ ++ +.. |+|+
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~-Vi~~~~~~~~~~~~~~l-a~~v~--~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGP-ILVSDPNPYRLAFARPY-ADRLV--NPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHTTCCS-EEEECSCHHHHGGGTTT-CSEEE--CTTTSCHHHHHHHHHSSCEEEEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHh-HHhcc--CcCccCHHHHHHHhcCCCCCEEE
Confidence 36 78899999964 5888888888763327 999987 6666666553 21222 2211 11 123 7776
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
-.-. . ...++...++|+|+|++++.-.
T Consensus 237 d~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 237 EFSG-----N---EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp ECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred ECCC-----C---HHHHHHHHHHHhcCCEEEEEec
Confidence 4321 1 2457888899999999988654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=80.55 E-value=1.3 Score=36.66 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=60.3
Q ss_pred hhcCCCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC----CCC-c-c
Q 025363 90 EGYNGFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS----IPA-A-D 158 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~----~p~-~-D 158 (254)
+.. ...++.+||-+|+|. |.++..+++.....+ ++++|. ++-.+.+++..--.++. .|+.+. .+. . |
T Consensus 160 ~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 160 ELA-NIKLGDTVCVIGIGPVGLMSVAGANHLGAGR-IFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp HHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSS-EEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred Hhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcE-EEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 444 477888999999764 888888888764337 888987 65555544321111221 121111 112 2 8
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+|+-.-.- ...++.+.++|+|||++++.-..
T Consensus 238 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 238 KVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEECSSC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEEECCCC--------hHHHHHHHHHHhcCCEEEEeccc
Confidence 87742211 14578888999999999987643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.38 E-value=1.5 Score=36.65 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=56.3
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCCC-CCccEEEeccccc
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKSI-PAADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~~-p~~D~v~~~~vlh 167 (254)
..+++.+||-+|+|. |..+..+++.. +.+ +++.+. ++-.+.+++..--.++.. |+.+.. ...|+|+-.-.-
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~- 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAH-VVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA- 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC-
Confidence 367788999999874 88888888876 567 888886 554444433211111111 111111 123887753221
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...++.+.++|+|+|++++.-.
T Consensus 268 -------~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 -------PHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -------CCCHHHHHTTEEEEEEEEECCC
T ss_pred -------HHHHHHHHHHhccCCEEEEecc
Confidence 1235677889999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 254 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 7e-57 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-55 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-50 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-22 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-20 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 179 bits (456), Expect = 7e-57
Identities = 83/230 (36%), Positives = 132/230 (57%), Gaps = 3/230 (1%)
Query: 21 APYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80
A + AL+ +W +A++D I+ F VHG Y + GK +MN + K+M V
Sbjct: 5 ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 64
Query: 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI 140
M +LE Y GF+G+ LVDVGG +G L +I+ K+ I GINFDLP+V+ AP +
Sbjct: 65 CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPL 123
Query: 141 PGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200
G+ H+GGDMF S+P DA+ +K V W+D++C + NC+KAL GK+I E +LP+
Sbjct: 124 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183
Query: 201 DSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250
+ N S+ ++ + D + + RTE+++++L +GF ++
Sbjct: 184 EPNTSEESKLVSTLDNLMFITVGGR--ERTEKQYEKLSKLSGFSKFQVAC 231
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 176 bits (446), Expect = 2e-55
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 7/240 (2%)
Query: 18 LSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAM 77
L AP V L + + K I + + F G + + K PE N AM
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 78 SGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEA 137
+ S ++ + F G++ +VDVGG G ++I + + I FD P+VV
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENL 119
Query: 138 PSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALP---AGGKLIAC 194
+T++GGDMF SIP ADA+ +K++L WTD +C I++ C +A+ GK+
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179
Query: 195 EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254
+ V+ +E+Q T+ L D+ + + G R E+E+K+L AGF H ++ + +
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKISPLTGF 236
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 162 bits (411), Expect = 4e-50
Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 3/235 (1%)
Query: 17 GLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKA 76
G+S + L + LM W + A+LD I PF K +G A+ Y+G P N + K
Sbjct: 2 GVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 77 MSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAE 136
MS S M +LE Y GF+G+K LVDVGG G + I+ K+ I +GINFDLP V+ +
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIED 119
Query: 137 APSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196
APS PGV H+GGDMF SIP ADA+FMKW+ W+D+ C ++NCY+ALP GK+I E
Sbjct: 120 APSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179
Query: 197 VLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251
+LP + S T+ ++ D +M + G RT++EF+ L AGF +++
Sbjct: 180 ILPVAPDSSLATKGVVHID-VIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 90.8 bits (224), Expect = 1e-22
Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 14/210 (6%)
Query: 50 PFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAG 109
+ +G P + + MS + + Y+ + V+ ++DVGG G
Sbjct: 35 AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNG 93
Query: 110 DCLRMILQKHRFICEGINFDLPEVVAEA--------PSIPGVTHIGGDMFKSIPAADAIF 161
L I + + G +L A + G AD +
Sbjct: 94 GMLAAIALRAPHL-RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVL 152
Query: 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 221
+ +VL W+D++ I+ C +AL GG+L+ + + + LL D+ ++T
Sbjct: 153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL--DLRMLTF 210
Query: 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251
+ RT E L AG
Sbjct: 211 MGGR--VRTRDEVVDLAGSAGLALASERTS 238
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 85.1 bits (209), Expect = 2e-20
Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 15/210 (7%)
Query: 50 PFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAG 109
+ ++G+P Y P++ ++ + Y+ + V+ ++DVGG G
Sbjct: 34 TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKG 92
Query: 110 DCLRMILQKHRFICEGINFDLPEVVAEAPS--------IPGVTHIGGDMFKSIPAADAIF 161
I ++ + ++ V A S G ADAI
Sbjct: 93 GFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 151
Query: 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 221
+ +VL W D + I+ C +AL GG+++ E +++ +++ L D+ ++
Sbjct: 152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTEL---DLRMLVF 208
Query: 222 YRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251
RT +++ L AG + ++
Sbjct: 209 LGGA--LRTREKWDGLAASAGLVVEEVRQL 236
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.85 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.82 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.75 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.74 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.73 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.72 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.7 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.65 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.64 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.54 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.52 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.49 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.49 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.46 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.44 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.44 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.43 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.39 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.38 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.38 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.35 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.31 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.29 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.26 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.18 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.11 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.06 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.05 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.03 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.01 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.01 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.9 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.62 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.58 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.57 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.56 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.48 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.46 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.39 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.38 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.36 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.34 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.34 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.31 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.3 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.29 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.25 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.25 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.21 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.2 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.15 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.1 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.08 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.07 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.05 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.02 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.96 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.91 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.9 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.88 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.76 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.69 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.49 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.28 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.11 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.11 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.78 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.69 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.68 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.26 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.24 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.98 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.88 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.37 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.34 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.15 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.7 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.69 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.55 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.27 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.08 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.88 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.68 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.61 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.86 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.89 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.89 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 90.8 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.78 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.45 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.58 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.49 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 88.57 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 87.85 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.14 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.06 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.71 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 86.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.54 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.44 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.75 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.72 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.43 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.83 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.49 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 80.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 80.19 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.1e-48 Score=311.47 Aligned_cols=230 Identities=37% Similarity=0.688 Sum_probs=199.0
Q ss_pred ChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCC
Q 025363 19 SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGV 98 (254)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~ 98 (254)
++++++.+++++..+.+|.+|.+++++|++++|+.++|.++|||+.++|+..+.|+++|...+....+.+++.++.|++.
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~ 82 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 82 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 78999999999999999999999999987688999999999999999999999999999998888899999999657889
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHH
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 178 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il 178 (254)
.+|||||||+|.++..+++++|+++ ++++|+|++++.+...+||+++.+|+++++|.+|+|+++++||+|+|+++.++|
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCe-EEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 9999999999999999999999999 999999999998888899999999999999988999999999999999999999
Q ss_pred HHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 179 ENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 179 ~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
++++++|+|||+|+|.|.+.++.+..+........+|+.|+. ..+|++||.+||.++|++|||+.+++...
T Consensus 162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~--~~~g~ert~~e~~~ll~~AGF~~v~v~~~ 232 (244)
T d1fp1d2 162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQVACR 232 (244)
T ss_dssp HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh--hCCCcCCCHHHHHHHHHHcCCCceEEEec
Confidence 999999999999999999998776555444455677888886 66899999999999999999999998654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.6e-47 Score=306.10 Aligned_cols=234 Identities=41% Similarity=0.737 Sum_probs=212.2
Q ss_pred CCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCC
Q 025363 17 GLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFK 96 (254)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~ 96 (254)
+.|+++++++..++.++++|.+|.+++|+|+ ++|+.++|.++|+|+.++|+..+.|+++|...+......+++.++.++
T Consensus 2 ~~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~ 80 (243)
T d1kyza2 2 GVSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFE 80 (243)
T ss_dssp SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred CCcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccccc
Confidence 4689999999888889999999999999998 899999999999999999999999999999988888889999996346
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+..+|||||||+|.++..+++++|+++ ++++|+|++++.++..+|++++.+|+++++|.+|+|++++++|+|+++++..
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~ 159 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIK-GINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK 159 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCe-EEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence 678999999999999999999999999 9999999999998888999999999999999899999999999999999999
Q ss_pred HHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 177 IMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 177 il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
+|++++++|+|||+++|.|...++....+........+|+.|+. +..+|++||.+||++++++|||+.+++.+.++
T Consensus 160 iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~-~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~ 235 (243)
T d1kyza2 160 FLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLA-HNPGGKERTQKEFEDLAKGAGFQGFKVHCNAF 235 (243)
T ss_dssp HHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHH-HCSSCCCEEHHHHHHHHHHHCCSCEEEEEEET
T ss_pred HHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHh-hCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999999999999999988765544333344567888887 55689999999999999999999999987654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.3e-45 Score=296.31 Aligned_cols=232 Identities=30% Similarity=0.478 Sum_probs=206.6
Q ss_pred ChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCC
Q 025363 19 SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGV 98 (254)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~ 98 (254)
|+++++++..++..+.+|..|.+++++|.+++|+.++|+++|+|+.++|+..+.|+++|...+......+.+....++..
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 68899999999999999999999999987689999999999999999999999999999988877666665542136778
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHH
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 178 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il 178 (254)
.+|||||||+|.++..+++++|+++ ++++|+|++++.+...+||+++.+|+++++|.+|+|+++++||+|+|+++.++|
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCe-EEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 8999999999999999999999999 999999999999988899999999999998888999999999999999999999
Q ss_pred HHHHHhCCCC---CEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 179 ENCYKALPAG---GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 179 ~~~~~~L~pg---G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
++++++|+|| |+++|.|.+.++....+........+++.|+. .+|++||.+||+++|++|||+.+++.++.|+
T Consensus 161 ~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~---~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~ 236 (244)
T d1fp2a2 161 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLTGF 236 (244)
T ss_dssp HHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred HHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh---CCCcCCCHHHHHHHHHHcCCceEEEEECCCC
Confidence 9999999998 89999999998775544433333456777764 4799999999999999999999999998774
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.3e-42 Score=281.63 Aligned_cols=229 Identities=20% Similarity=0.270 Sum_probs=196.4
Q ss_pred CCChHHHHHHhcChhH-HhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCC
Q 025363 17 GLSYAPYVLQHHQDAL-MSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGF 95 (254)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~ 95 (254)
|.++++|+.+...... ..+|.+|.+++|+|. ++++..+|.++|+|+.++|+..+.|+++|...+....+.+++.+| |
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~ 79 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W 79 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-C
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-C
Confidence 5689999876533322 347999999999998 889999999999999999999999999999999989999999996 9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCCCCC-ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~~p~-~D~v~~~~vlh 167 (254)
++..+|||||||+|.++..+++++|+++ ++++|+|++++.+++. +|++++.+|+++++|. +|+|++.++||
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~-~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcE-EEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence 9999999999999999999999999999 9999998888766532 7899999999988776 49999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+|+++++.++|++++++|||||+|+|.|...++.....+ .....+|+.|+. ..+|++||.+||++++++|||++++
T Consensus 159 ~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~--~~~~~~d~~ml~--~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR--FFSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------H--HHHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccH--HHHHHHHHHHHh--hCCCccCCHHHHHHHHHHCCCceeE
Confidence 999999999999999999999999999987665433222 223456888886 5689999999999999999999999
Q ss_pred EEEcc
Q 025363 248 LYRVL 252 (254)
Q Consensus 248 ~~~~~ 252 (254)
+.++.
T Consensus 235 ~~~~~ 239 (256)
T d1qzza2 235 ERTSG 239 (256)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=3e-41 Score=273.53 Aligned_cols=226 Identities=20% Similarity=0.336 Sum_probs=192.9
Q ss_pred ChHHHHHHhc-ChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCCC
Q 025363 19 SYAPYVLQHH-QDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKG 97 (254)
Q Consensus 19 ~~~~~~~~~~-~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~ 97 (254)
.++.|..+.. -.....+|.+|++++|+|+ ++++.++|+++|+|+.++|+..+.|+.+|...+....+.+++.++ |++
T Consensus 3 ~~r~~~~~~~~~~~~~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 80 (253)
T d1tw3a2 3 AQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTN 80 (253)
T ss_dssp CHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTT
T ss_pred chhhhhCHHHHHhhccccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-Ccc
Confidence 4556654321 1123458999999999998 889999999999999999999999999999999999999999996 999
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCCCCC-ccEEEeccccccC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 169 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~ 169 (254)
..+|||||||+|.++..+++++|+++ ++++|+|++++.+++. .||+++.+|++++.|. +|+|++.++||+|
T Consensus 81 ~~~VLDvGcG~G~~~~~la~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~ 159 (253)
T d1tw3a2 81 VRHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNW 159 (253)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEeCCCCCHHHHHHHHhcceeE-EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccC
Confidence 99999999999999999999999999 9999998887766542 7899999999988665 4999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
+++++.++|++++++|||||+|+|.|...++..... .....+|+.|+. ..+|++||.+||.++++++||++++++
T Consensus 160 ~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~--~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 160 PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcch---hHHHHhhHHHHh--hCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999998765442221 122356777776 568999999999999999999999988
Q ss_pred Ecc
Q 025363 250 RVL 252 (254)
Q Consensus 250 ~~~ 252 (254)
.++
T Consensus 235 ~~~ 237 (253)
T d1tw3a2 235 QLP 237 (253)
T ss_dssp EEE
T ss_pred ECC
Confidence 764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=3.4e-21 Score=152.16 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=112.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~D~v~~~ 163 (254)
.+++.+|||||||+|..+..+++.. |+.+ ++++|+ ++|++.+++. .++.+..+|+.+. .+..|++++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence 4678899999999999999999874 7888 999999 9999988752 5678888888765 3345999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhcccc-------------CceecC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA-------------KGNHRT 230 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~t 230 (254)
.++|+++.++..++|++++++|||||++++.|...+..+..... .......+.... ... .-...+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRAN-GYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHT-TGGGSTTHHHHHHHHHHCCCCC
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHc-CCCHHHHHHHHHHhhcccCCCC
Confidence 99999998888999999999999999999999887654221000 000000100000 000 012358
Q ss_pred HHHHHHHHHhCCCCeeeEE
Q 025363 231 EQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~ 249 (254)
.+++.++|+++||+.+++.
T Consensus 194 ~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCceEEe
Confidence 8999999999999987753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.85 E-value=2.6e-21 Score=153.22 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=114.1
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~ 157 (254)
.++++.. ..+++.+|||||||+|.++..++++.+ + ++++|+ +++++.+++. ++++|+.+|+.+. ++..
T Consensus 5 ~~ll~~~-~l~~~~rVLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHH-TCCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhc-CCCCcCEEEEecccCcHHHHHHHHhCC--E-EEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 4566666 489999999999999999999998853 5 999999 8888876542 7899999999875 5543
Q ss_pred --cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh-hhhccccCceecCHHHH
Q 025363 158 --DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF-VMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 158 --D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~ 234 (254)
|+|++.+++|++++. .++|++++++|||||+|++.+...+... .... ..+.. ... .....+.++.++|
T Consensus 81 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 151 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---AFDV---FYNYVEKER-DYSHHRAWKKSDW 151 (231)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---HHHH---HHHHHHHHH-CTTCCCCCBHHHH
T ss_pred ccccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCH---HHHH---HHHHHHhhc-ccCcccCCCHHHH
Confidence 999999999999654 5889999999999999999998766431 1111 11110 010 0112345688999
Q ss_pred HHHHHhCCCCeeeEEE
Q 025363 235 KQLGFFAGFPHLRLYR 250 (254)
Q Consensus 235 ~~ll~~aGf~~~~~~~ 250 (254)
.++|+++||+++++..
T Consensus 152 ~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 152 LKMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
Confidence 9999999999877653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.84 E-value=2.5e-21 Score=158.07 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=119.2
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS 153 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~ 153 (254)
..++..+.... .++++.+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++|+.+|+.+.
T Consensus 53 ~~~~~~l~~~~-~l~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 53 EWLASELAMTG-VLQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhc-CCCCCCEEEEeCCCCcHHHhhhhccC-CcE-EEEEeccchhhhhhhcccccccccccccccccccccc
Confidence 33556666666 48899999999999999999999876 567 999999 8888777653 6899999999876
Q ss_pred -CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 154 -IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 154 -~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++.. |+|++..++||+++. .++|++++++|||||+|++.+....+........ ...+... .....+
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~s 198 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ---PILDRIK------LHDMGS 198 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGH---HHHHHHT------CSSCCC
T ss_pred cccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHH---HHHHHhc------cCCCCC
Confidence 5543 999999999999754 5899999999999999999998876543211111 0111111 112347
Q ss_pred HHHHHHHHHhCCCCeeeEEEc
Q 025363 231 EQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.+++.++++++||+.+.+...
T Consensus 199 ~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 199 LGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHcCCceEEEEEC
Confidence 899999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=8.6e-21 Score=152.37 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=117.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC-c
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-A 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-~ 157 (254)
...+++.++ ..+..+|||||||+|.++..++..+.+ . ++++|. +.+++.+++. ++++|..+|+.+. ++. .
T Consensus 82 s~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-T-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-E-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-e-EEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 345667774 677889999999999999999887654 5 889999 8898887643 5689999999776 443 3
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|++..++||+++++..++|++++++|+|||+++|.|........ ..+. ......||.++|++
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~------~d~~~~rs~~~~~~ 223 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK------EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET------TTTEEEBCHHHHHH
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc------cCCceeCCHHHHHH
Confidence 9999999999999999999999999999999999999876543211 1111 11234579999999
Q ss_pred HHHhCCCCeeeEEEc
Q 025363 237 LGFFAGFPHLRLYRV 251 (254)
Q Consensus 237 ll~~aGf~~~~~~~~ 251 (254)
+++++||++++...-
T Consensus 224 l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 224 LFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHTCCEEEEEEC
T ss_pred HHHHcCCEEEEEEee
Confidence 999999999887653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.6e-21 Score=151.75 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC-c-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-A-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~-~-D~v~~~~ 164 (254)
..+..+|||||||+|..+..+++..+. + ++++|+ +.|++.+++. .+++|+++|+.+. ++. . |+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-E-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-E-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-E-EEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999998877653 6 899999 9999877653 4679999999875 443 3 9999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
++|++++++..++|++++++|||||++++.+...++.. .++. ......++.++|.++++++||+
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~------~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD------VDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET------TTTEEEEBHHHHHHHHHHTTCC
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc------CCceeeCCHHHHHHHHHHcCCE
Confidence 99999998888999999999999999999988765431 1110 1223457999999999999999
Q ss_pred eeeEEEccC
Q 025363 245 HLRLYRVLD 253 (254)
Q Consensus 245 ~~~~~~~~~ 253 (254)
+++.....|
T Consensus 200 ii~~~~q~~ 208 (222)
T d2ex4a1 200 LLAEERQEN 208 (222)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEeCC
Confidence 998876544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=1.4e-20 Score=149.42 Aligned_cols=152 Identities=14% Similarity=0.207 Sum_probs=115.1
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~- 157 (254)
-+++..+ ++++.+|||||||+|.++..++++.+ + ++++|+ +.|++.+++. +++.++.+|+.+. +++.
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~-v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--e-EEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3566674 99999999999999999999998863 5 999999 8888877643 6799999999875 5554
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
|+|++.+++|++++ ..++|++++++|||||++++.+...+.. +........ +.... .....+..+..+|..
T Consensus 83 fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~ 154 (234)
T d1xxla_ 83 FDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPED---PVLDEFVNH--LNRLR-DPSHVRESSLSEWQA 154 (234)
T ss_dssp EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSS---HHHHHHHHH--HHHHH-CTTCCCCCBHHHHHH
T ss_pred cceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCC---HHHHHHHHH--HHhhC-CCcccccCCHHHHHH
Confidence 99999999999865 4699999999999999999998876543 111111000 11111 012245568999999
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
+++++||.+.++..
T Consensus 155 ~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 155 MFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHTTEEEEEEEE
T ss_pred HHHHCCCceeEEEE
Confidence 99999998766543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.9e-20 Score=147.86 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=116.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+.+.+ .+.++.+|||||||+|..+..++++++ ++ ++++|+ +.+++.+++. ++|+|+.+|+.+..++
T Consensus 22 ~~~l~~~~-~l~pg~~VLDiGCG~G~~~~~la~~~~-~~-v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 22 YATLGRVL-RMKPGTRILDLGSGSGEMLCTWARDHG-IT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHHHHHT-CCCTTCEEEEETCTTCHHHHHHHHHTC-CE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHhcC-CE-EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 45566777 489999999999999999999998875 68 999999 8888776542 6799999999887554
Q ss_pred -c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHH
Q 025363 157 -A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 157 -~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
. |+|++..++|++++. .++|++++++|||||++++.+......+....... .... .......+..++
T Consensus 99 ~~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~ 167 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ---ACGV------SSTSDFLTLPGL 167 (245)
T ss_dssp SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH---TTTC------SCGGGSCCHHHH
T ss_pred CceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHH---Hhcc------CCCcccCCHHHH
Confidence 3 999999999999754 68999999999999999999887655432111111 0000 111234688999
Q ss_pred HHHHHhCCCCeeeEEE
Q 025363 235 KQLGFFAGFPHLRLYR 250 (254)
Q Consensus 235 ~~ll~~aGf~~~~~~~ 250 (254)
.+.++++||+++....
T Consensus 168 ~~~~~~aG~~~v~~~~ 183 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVL 183 (245)
T ss_dssp HHHHHTTTBCCCEEEE
T ss_pred HHHHHHcCCEEEEEEe
Confidence 9999999999887543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.7e-18 Score=134.62 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=101.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~ 172 (254)
+..+|||||||+|.++..+. + ++++|+ +.+++.+++ .++.++.+|+.+. .++ . |+|++.++||++++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~-~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d- 106 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------I-KIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDD- 106 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------C-CEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC-
T ss_pred CCCeEEEECCCCcccccccc------e-EEEEeCChhhcccccc-cccccccccccccccccccccccccccccccccc-
Confidence 45689999999999887762 4 678899 999988876 4799999999775 444 3 99999999999975
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
..++|++++++|+|||++++.++..... ........... .. .......+|.+++.++|+++||+++++...
T Consensus 107 -~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~~-~~--~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~ 177 (208)
T d1vlma_ 107 -PERALKEAYRILKKGGYLIVGIVDRESF----LGREYEKNKEK-SV--FYKNARFFSTEELMDLMRKAGFEEFKVVQT 177 (208)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTTC--C--CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -cccchhhhhhcCCCCceEEEEecCCcch----hHHhhhhcccc-cc--ccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence 4689999999999999999988644321 00000000000 00 012234579999999999999998887653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=6.2e-18 Score=137.07 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=120.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+++.+. .+++.+|||||||.|.++..++++++ ++ ++++|+ ++.++.+++. .++.+...|..+ ++.
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~-v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~ 116 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 116 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-ee-EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hcc
Confidence 566888884 99999999999999999999888874 58 999999 7777665432 567777777643 344
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC----hh-hhhhcccchHhhhhccccCceecC
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE----SQ-RTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
.|.|++..+++|++++....+|++++++|||||++++.+....+.... .. ........++..-. ..++|.-.+
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~ky-ifPgg~lPS 195 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPS 195 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhh-ccCCCcccc
Confidence 499999999999998888899999999999999999988665432110 00 00001112222211 246677789
Q ss_pred HHHHHHHHHhCCCCeeeEEEc
Q 025363 231 EQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~ 251 (254)
.+++.+.++++||++.++..+
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred hHhhhhhHHhhccccceeeec
Confidence 999999999999999988765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=2.1e-17 Score=133.97 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=121.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------CCCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------~~~i~~~~~d~~~~~p 155 (254)
..+.+++.+. .+++.+|||||||.|..+..+++.+ +++ ++++++ ++.++.+++ .+++++..+|+.+...
T Consensus 50 k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~-v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (285)
T d1kpga_ 50 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE 126 (285)
T ss_dssp HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCC
T ss_pred HHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-Ccc-eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccc
Confidence 4566888884 9999999999999999999999998 478 999998 665554433 1789999999854322
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-----ChhhhhhcccchHhhhhccccCceecC
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
..|.|++...+.|+....-..++++++++|||||++++.+.....+.. .+.........++..-. ..++|.-.+
T Consensus 127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ky-iFpgg~lPs 205 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPS 205 (285)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHH-hccCCCCCC
Confidence 349999999999988776678999999999999999998887543210 00000011111221111 246677789
Q ss_pred HHHHHHHHHhCCCCeeeEEEc
Q 025363 231 EQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~~~ 251 (254)
..++..+++++||++.++..+
T Consensus 206 l~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhHHHHHHHhchhhcccccc
Confidence 999999999999999988765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=8.1e-18 Score=132.43 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=107.0
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCCC--CC-c-cEEEecc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKSI--PA-A-DAIFMKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~~--p~-~-D~v~~~~ 164 (254)
+.+++.+|||+|||+|.++..+++..|+.+ ++++|+ |.+++.++. .+++..+.+|...+. .. . |++++.+
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~ 149 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE 149 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec
Confidence 488999999999999999999999999888 999999 888776543 477888888887762 22 2 7777777
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
.+|++ ++...+++++++.|||||++++.+.........++ ....+++.+.|+++||+
T Consensus 150 ~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~---------------------~~~~~e~~~~L~~aGF~ 206 (230)
T d1g8sa_ 150 DVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP---------------------KEIFKEQKEILEAGGFK 206 (230)
T ss_dssp CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH---------------------HHHHHHHHHHHHHHTEE
T ss_pred cccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH---------------------HHHHHHHHHHHHHcCCE
Confidence 77776 45678899999999999999998765443321111 12346788999999999
Q ss_pred eeeEEEccCC
Q 025363 245 HLRLYRVLDY 254 (254)
Q Consensus 245 ~~~~~~~~~~ 254 (254)
+++...+.+|
T Consensus 207 ive~idL~py 216 (230)
T d1g8sa_ 207 IVDEVDIEPF 216 (230)
T ss_dssp EEEEEECTTT
T ss_pred EEEEecCCCC
Confidence 9999887655
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.72 E-value=8e-18 Score=136.86 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=88.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~- 157 (254)
.+++......+..+|||||||+|..+..+++.+|. .+ ++++|+ +.+++.+++. .+++|+.+|+.+. +++.
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCE-EEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 34433323566789999999999999999998874 66 999999 8888877643 3689999999875 4544
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|++.+++|++++. ..+|++++++|||||++++.|+.
T Consensus 96 D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 96 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECC
T ss_pred eEEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999999764 58999999999999999998864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.71 E-value=6.8e-18 Score=132.95 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=103.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-CCCc-cEEEeccccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPAA-DAIFMKWVLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~p~~-D~v~~~~vlh~~~ 170 (254)
..+.+|||||||+|.++..++++. .+ ++++|+ +++++.++.. .++.++.+|+.+. .++. |+|++.++|||++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--ND-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SC-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--Ce-EEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 346789999999999999998874 46 999999 8898888653 5799999998766 4444 9999999999996
Q ss_pred HHHHHHHHHHHH-HhCCCCCEEEEEccccCCCCCChhhhhh--------cccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 171 DDECKLIMENCY-KALPAGGKLIACEPVLPDDSNESQRTRA--------LLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 171 ~~~~~~il~~~~-~~L~pgG~l~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+. .++|++++ ++|+|||++++.-+..... +.... ...+.-.-.. ...-+.++.+++.++++++
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~ 167 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGRLFLVCPNANAV----SRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRA 167 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCH----HHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHT
T ss_pred CH--HHHHHHHHHHhcCCCceEEEEeCCcccH----HHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHC
Confidence 54 68899998 7899999999975432211 00000 0000000000 1122346899999999999
Q ss_pred CCCeeeEEEc
Q 025363 242 GFPHLRLYRV 251 (254)
Q Consensus 242 Gf~~~~~~~~ 251 (254)
||++++...+
T Consensus 168 Gf~i~~~~~~ 177 (225)
T d2p7ia1 168 GLQVTYRSGI 177 (225)
T ss_dssp TCEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9998886543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=4.8e-17 Score=132.21 Aligned_cols=165 Identities=14% Similarity=0.138 Sum_probs=120.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
..+.+++.+ ..+++.+|||||||.|.++..++++++ ++ ++++++ ++.++.+++. .++.+...|+...-.
T Consensus 49 k~~~~~~~l-~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~-v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 125 (291)
T d1kpia_ 49 KRKLALDKL-NLEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE 125 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred HHHHHHHhc-CCCCCCEEEEecCcchHHHHHHHHhcC-cc-eeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence 356678888 499999999999999999999999985 57 999998 6665544332 678888888643222
Q ss_pred CccEEEeccccccCCH-------HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhh-----hhhcccchHhhhhccc
Q 025363 156 AADAIFMKWVLTTWTD-------DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR-----TRALLEGDIFVMTIYR 223 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~-------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (254)
..|.|++...+.|+++ +.-..++++++++|||||++++.....++....... .......++..-. ..
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky-iF 204 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE-IF 204 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH-TC
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH-hc
Confidence 2499999999988875 345789999999999999999998887643110000 0000111221111 24
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
++|.-.+..++...++++||++.++..+.
T Consensus 205 pgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 205 PGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHhhhcccccccceeeecc
Confidence 67777899999999999999999888764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=2.4e-17 Score=129.36 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=88.4
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-c-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-A- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-~- 157 (254)
.++..+ .++..+|||||||+|.++..+++. +.+ ++++|+ +.|++.+++. ..+.++.+|+.+. ++. .
T Consensus 29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~-v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f 103 (226)
T d1ve3a1 29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF 103 (226)
T ss_dssp HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcc-cccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence 344443 456789999999999999999986 456 999999 8999887643 5688999999875 454 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+|++..++|++++.+..++|+++.++|||||++++....
T Consensus 104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999999999999888899999999999999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=8.9e-17 Score=123.95 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=88.7
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~- 157 (254)
.++... .+....+|||||||+|..+..++++. .+ ++++|+ +.+++.++.. +++.+...|+.+. .++.
T Consensus 21 ~~~~~~-~~~~~grvLDiGcG~G~~~~~la~~g--~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f 96 (198)
T d2i6ga1 21 DVLAAA-KVVAPGRTLDLGCGNGRNSLYLAANG--YD-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY 96 (198)
T ss_dssp HHHHHH-TTSCSCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred HHHHHc-ccCCCCcEEEECCCCCHHHHHHHHHh--hh-hccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence 344444 24445699999999999999999984 46 999999 8888866532 6789999999886 4444
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|+|++..++|++++++..++|++++++|+|||++++.....
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999999998888999999999999999999977653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=2.1e-16 Score=126.08 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~ 157 (254)
...+...+. ..+..+|||||||+|..+..++++. .. ++++|+ +.|++.+++. .++++..+|+.+. +++.
T Consensus 30 ~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~-v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~ 105 (251)
T d1wzna1 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE 105 (251)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eE-EEEEeeccccccccccccccccccchheehhhhhcccccc
Confidence 444555663 6777899999999999999999874 46 999999 8999988754 4799999999775 5554
Q ss_pred -cEEEec-cccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 158 -DAIFMK-WVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 158 -D~v~~~-~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|+|++. .++++++.++..++|++++++|||||++++..
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 998885 68888888888999999999999999998843
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.64 E-value=6.5e-16 Score=118.52 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=89.4
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------------CCcEEEeCC
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------------------PGVTHIGGD 149 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------------~~i~~~~~d 149 (254)
...+ ..+++.+|||+|||+|..+..|+++ +.+ ++++|+ +.+++.+++. ..+.|..+|
T Consensus 13 ~~~l-~~~~~~rvLd~GCG~G~~a~~la~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 13 WSSL-NVVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHH-CCCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHc-CCCCCCEEEEecCcCCHHHHHHHHc--CCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 3344 4788999999999999999999998 567 999999 8899887642 346888899
Q ss_pred CCCCCCC---c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 150 MFKSIPA---A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 150 ~~~~~p~---~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+++..+. . |+|+.+.++|++++++....+++++++|||||++++......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 9876332 2 999999999999998899999999999999999988766543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.61 E-value=9.9e-16 Score=122.37 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C-CC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I-PA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~-p~- 156 (254)
+++.+ .+++.+|||||||+|..+..+++... .+ ++++|+ +.+++.|+++ .++.|..+|+... + ++
T Consensus 17 lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~-~~-v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 17 LIRLY--TKRGDSVLDLGCGKGGDLLKYERAGI-GE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHH--CCTTCEEEEETCTTTTTHHHHHHHTC-SE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHh--CCCcCEEEEecccCcHHHHHHHHcCC-Ce-EEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 44555 46678999999999999999988743 35 899999 8898887532 4699999999765 3 33
Q ss_pred c-cEEEeccccccC--CHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 A-DAIFMKWVLTTW--TDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ~-D~v~~~~vlh~~--~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. |+|++..++|++ +.++..++|++++++|||||++++.
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 3 999999999986 4467889999999999999999875
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=1.2e-15 Score=118.22 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=80.1
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--c-cEEEecc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA--A-DAIFMKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~--~-D~v~~~~ 164 (254)
+.+++.+|||+|||+|..+..+++..|+.+ ++++|+ |.+++.+++. +++.++.+|...+ .+. . ++.++.+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~-V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCe-EEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 488999999999999999999999999888 999999 9888877543 7899999998775 322 1 2323333
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.++++ .+...+++++++.|||||++++.+..
T Consensus 132 ~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 132 DIAQK--NQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp CCCST--THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccCh--hhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 44444 34568999999999999999997653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.4e-15 Score=116.88 Aligned_cols=130 Identities=10% Similarity=-0.035 Sum_probs=100.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------------------CCCcEEEeCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------------------IPGVTHIGGDM 150 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------------------~~~i~~~~~d~ 150 (254)
..++.+|||+|||+|..+..|+++ +.+ ++++|+ +.+++.+++ ..++++..+|+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 567889999999999999999987 567 999999 888875431 14789999999
Q ss_pred CCCC--CC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-ChhhhhhcccchHhhhhccccC
Q 025363 151 FKSI--PA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 151 ~~~~--p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
++.. +. . |+|+...++|++++++...++++++++|||||++++.....+.... .++
T Consensus 120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp------------------- 180 (229)
T d2bzga1 120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPP------------------- 180 (229)
T ss_dssp GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSS-------------------
T ss_pred hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCC-------------------
Confidence 8762 22 2 9999999999999999999999999999999998887766543211 110
Q ss_pred ceecCHHHHHHHHHhCCCCeeeE
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
...+.+|+.+++.. +|.+..+
T Consensus 181 -~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 -FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp -CCCCHHHHHHHHTT-TEEEEEE
T ss_pred -CCCCHHHHHHHhcC-CCEEEEE
Confidence 11377888888854 5665443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=2.2e-15 Score=119.82 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-cEEEec-cccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA-DAIFMK-WVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~-D~v~~~-~vlh 167 (254)
+..+|||||||+|.++..++++.. + ++++|+ +.|++.++++ .+++++.+|+.+. +++. |+|++. ++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~-v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--N-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--E-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--c-cEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 457999999999999999999854 5 999999 9999887653 5799999999876 4444 998864 6776
Q ss_pred cC-CHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TW-TDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~-~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++ +.++..++|+++++.|||||.|++
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 65 567888999999999999999886
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=9.5e-15 Score=118.33 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=97.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH----cCCCC-eEEEeec-hHHHhhCCCC-------CCcEE--EeC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK----HRFIC-EGINFDL-PEVVAEAPSI-------PGVTH--IGG 148 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~~~~~-~~~~~D~-~~~~~~~~~~-------~~i~~--~~~ 148 (254)
....++..+...++..+|||||||+|.++..++++ +++.. .++++|+ +.+++.+++. ..+.+ ...
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 34455555533455668999999999998877664 44432 1688998 8888776432 33433 333
Q ss_pred CCC-------CCCC-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh-h
Q 025363 149 DMF-------KSIP-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF-V 218 (254)
Q Consensus 149 d~~-------~~~p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~-~ 218 (254)
++. ...+ +. |+|++.+++|++++. .++|++++++|+|||.|++....... .+.. . ...+. .
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~~----~~~~-l--~~~~~~~ 177 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----GWDK-L--WKKYGSR 177 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----HHHH-H--HHHHGGG
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCcc----hHHH-H--HHHHHHh
Confidence 331 1222 23 999999999999654 68999999999999999987653211 1110 0 00110 0
Q ss_pred hhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 219 MTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 219 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
.. .......++.++|.++|++.||+...
T Consensus 178 ~~-~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 178 FP-QDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp SC-CCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred cC-CCcccccCCHHHHHHHHHHCCCceEE
Confidence 00 01123446889999999999998543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=4.3e-15 Score=117.70 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC-c-cEEEe-ccccccC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA-A-DAIFM-KWVLTTW 169 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~-~-D~v~~-~~vlh~~ 169 (254)
..++.+|||||||+|.++..+++. +.+ ++++|+ +.+++.++++....++.+|+.+- ++. . |+|++ ..++|++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred cCCCCEEEEECCCCchhccccccc--ceE-EEEeecccccccccccccccccccccccccccccccccceeeecchhhhh
Confidence 446779999999999999999876 457 999999 99999888764445778888765 544 3 99997 5789998
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++. .++|++++++|||||.+++..+
T Consensus 117 ~d~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 117 ENK--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp SCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence 765 5799999999999999998653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=9.8e-15 Score=117.52 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=79.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc--cEEEeccccccCC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWT 170 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~ 170 (254)
.+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. +++.|..+|+.+. ++++ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCE-EEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 4577999999999999999999999999 999999 8888887654 7899999999875 5553 99999888876
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+++++|+|||||+|++..+.
T Consensus 160 -------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 -------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp -------HHHHHHHEEEEEEEEEEEEC
T ss_pred -------HHHHHHHhCCCcEEEEEeeC
Confidence 46789999999999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-15 Score=121.31 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=94.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CC----------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PG---------------------------- 142 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~---------------------------- 142 (254)
..++.+|||||||+|.++..++... ... ++++|+ +.+++.+++. ..
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~-v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCc-EEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 3467899999999999887666553 225 899999 8888876532 00
Q ss_pred ----c-EEEeCCCCC-----CCCC-c-cEEEeccccccCC--HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhh
Q 025363 143 ----V-THIGGDMFK-----SIPA-A-DAIFMKWVLTTWT--DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRT 208 (254)
Q Consensus 143 ----i-~~~~~d~~~-----~~p~-~-D~v~~~~vlh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~ 208 (254)
+ .....+... +.+. . |+|++..++|+++ .++...++++++++|||||++++.+........
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~----- 201 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM----- 201 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-----
Confidence 0 111111111 1233 2 9999999999865 356789999999999999999998865332100
Q ss_pred hhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 209 RALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
..+. ......++.++++++|++|||+++++...
T Consensus 202 ----~~~~------~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 202 ----VGKR------EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ----ETTE------EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----eccc------cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0000 01122368999999999999999887544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=4.7e-15 Score=117.92 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=91.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC--ccEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA--ADAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~--~D~v~~~~vl 166 (254)
..++.+|||+|||+|.++..+++. +.+ ++++|+ +.+++.++++ -++++..+|+.+..+. .|+|+++...
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~-V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGK-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCE-EEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccc
Confidence 356889999999999999988765 457 999999 8899888753 3577888888765543 3999886443
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
....+++++++++|||||+|++.+... ...+++.+.++++||+.+
T Consensus 195 -----~~l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 195 -----ELHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEE
T ss_pred -----ccHHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCCEEE
Confidence 345688999999999999999865421 123567788999999988
Q ss_pred eEEE
Q 025363 247 RLYR 250 (254)
Q Consensus 247 ~~~~ 250 (254)
+...
T Consensus 240 ~~~~ 243 (254)
T d2nxca1 240 EEAA 243 (254)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.49 E-value=4.2e-14 Score=108.31 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=84.1
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCCC-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p~- 156 (254)
-+++.++ ..+..+|||+|||+|.++..+++.++. ++++|+ +.+++.++++ .++++..+|+++.+++
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 3556664 677899999999999999999988764 788898 8887777642 4689999999887554
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++...+|.. .+...++++++.+.|+|||++++..
T Consensus 119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 3999998888764 4556789999999999999988743
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-14 Score=116.57 Aligned_cols=138 Identities=14% Similarity=0.053 Sum_probs=94.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CC--------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PG-------------------------- 142 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~-------------------------- 142 (254)
...+.+|||||||+|.++...+..... + ++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~-v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-D-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-E-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-e-EEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 446789999999999877554444332 5 999999 8888866531 00
Q ss_pred -----cEEEeCCCCCCC--------CC-ccEEEeccccccCC--HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChh
Q 025363 143 -----VTHIGGDMFKSI--------PA-ADAIFMKWVLTTWT--DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ 206 (254)
Q Consensus 143 -----i~~~~~d~~~~~--------p~-~D~v~~~~vlh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~ 206 (254)
-.....|+.++. +. .|+|++..+||+.+ .++..++|++++++|||||.|++.+......
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~----- 204 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW----- 204 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-----
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc-----
Confidence 122334554431 11 39999999999875 3467899999999999999999988653221
Q ss_pred hhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 207 RTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
....... ......+.++++++|+++||++++..
T Consensus 205 -----~~~~~~~-----~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 205 -----YLAGEAR-----LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -----EEETTEE-----EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----cccCCcc-----cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0000000 01123699999999999999988754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.1e-14 Score=114.65 Aligned_cols=134 Identities=14% Similarity=0.071 Sum_probs=89.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CCCc--cEEE---
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IPAA--DAIF--- 161 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p~~--D~v~--- 161 (254)
.++.+|||||||+|..+..++++.+ .+ ++++|+ |.+++.+++. .++.++.+|+... ++.. |.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~-v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-Ce-EEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence 4578999999999999999988754 36 899999 8898887653 4567777765432 4432 6665
Q ss_pred --eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 162 --MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 162 --~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
....++++ .+...++++++++|||||+|++.+...... ...... ........+.+...+.
T Consensus 130 ~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~~---------~~~~~~~~~~~~~~l~ 191 (229)
T d1zx0a1 130 YPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKY---------SDITIMFEETQVPALL 191 (229)
T ss_dssp CCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTC---------SCHHHHHHHHTHHHHH
T ss_pred cccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhhh---------hhcchhhhhHHHHHHH
Confidence 46666666 455789999999999999998754321100 000000 0011112345667788
Q ss_pred hCCCCeeeEE
Q 025363 240 FAGFPHLRLY 249 (254)
Q Consensus 240 ~aGf~~~~~~ 249 (254)
++||+..++.
T Consensus 192 ~agF~~~~i~ 201 (229)
T d1zx0a1 192 EAGFRRENIR 201 (229)
T ss_dssp HTTCCGGGEE
T ss_pred HCCCeeEEEE
Confidence 8999876654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.44 E-value=5.2e-14 Score=111.34 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC------
Q 025363 73 MRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI------ 140 (254)
Q Consensus 73 ~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~------ 140 (254)
|...|...+..+ +..++...+ ..++.+|||+|||+|.++..+++. .|..+ ++.+|. +++++.++++
T Consensus 58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~-V~~vD~~e~~~~~A~~n~~~~~~ 135 (250)
T d1yb2a1 58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYD 135 (250)
T ss_dssp HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSC
T ss_pred HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhcC
Confidence 445565555543 344677774 899999999999999999999997 46778 999999 8888877643
Q ss_pred -CCcEEEeCCCCCCCCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 141 -PGVTHIGGDMFKSIPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 141 -~~i~~~~~d~~~~~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.++++..+|+.+.+++. |+|++. .++. ..+|++++++|||||+|++..+
T Consensus 136 ~~nv~~~~~Di~~~~~~~~fD~V~ld-----~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 136 IGNVRTSRSDIADFISDQMYDAVIAD-----IPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CTTEEEECSCTTTCCCSCCEEEEEEC-----CSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred CCceEEEEeeeecccccceeeeeeec-----CCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 68999999998876653 998862 2222 3679999999999999998543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.4e-13 Score=113.66 Aligned_cols=112 Identities=13% Similarity=0.231 Sum_probs=90.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------------CCCcEEEe
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------------IPGVTHIG 147 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------------~~~i~~~~ 147 (254)
....+++.+. .+++.+|||||||+|..+..+++.++..+ ++++|+ +.+++.++. ..+|+|+.
T Consensus 139 ~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~-~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 139 LVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSE-EEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 3566788884 88999999999999999999999998878 999999 877766542 25799999
Q ss_pred CCCCCC-CC----CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 148 GDMFKS-IP----AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 148 ~d~~~~-~p----~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+|+.+. .. .+|+|++.+..| + ++..+.|+++.+.|||||++++.+...+.
T Consensus 217 gd~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 217 GDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp CCTTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred CcccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 999875 32 248888866554 3 56678999999999999999998876554
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=3.8e-13 Score=104.98 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCC--CCC--c--cEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS--IPA--A--DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~--~p~--~--D~v~ 161 (254)
+.+++.+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++. ..++..+..|...+ .+. . |+|+
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence 58899999999999999999999986 6778 999999 888776643 36678888887654 221 2 5554
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
. .+++. ++...+++++++.|||||+++++..........++ +....+..++ .+.
T Consensus 149 ~--d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~---------------------~~v~~~v~~l-~~~ 202 (227)
T d1g8aa_ 149 E--DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP---------------------EQVFREVERE-LSE 202 (227)
T ss_dssp E--CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH---------------------HHHHHHHHHH-HHT
T ss_pred E--Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH---------------------HHHHHHHHHH-HHc
Confidence 4 33333 45678999999999999999987543322211000 0111233444 467
Q ss_pred CCCeeeEEEccCC
Q 025363 242 GFPHLRLYRVLDY 254 (254)
Q Consensus 242 Gf~~~~~~~~~~~ 254 (254)
||++++...+.+|
T Consensus 203 gf~iie~i~L~p~ 215 (227)
T d1g8aa_ 203 YFEVIERLNLEPY 215 (227)
T ss_dssp TSEEEEEEECTTT
T ss_pred CCEEEEEEcCCCC
Confidence 9999998887654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.39 E-value=1.3e-13 Score=104.78 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=81.3
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC--
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP-- 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p-- 155 (254)
.++..+ ...++.+|||||||+|.++..+++..+ + ++++|. +.+++.++++ ++|+++.+|+.+. .+
T Consensus 24 ~il~~l-~~~~g~~VLDiGcGsG~~s~~lA~~~~--~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 24 LIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRVR--R-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHH-CCCTTCEEEEESCTTSHHHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhc-CCCCCCEEEEEECCeEcccccccccce--E-EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 345555 478899999999999999999988753 5 999999 8998888763 6899999998765 33
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..|+|++....+++ ..+++.+.+.|||||++++...
T Consensus 100 ~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 24999988766643 4789999999999999988543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=2.7e-13 Score=105.13 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=82.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p- 155 (254)
...+++.++ .+++.+|||||||+|..+..+++.. +..+ ++.+|. +++++.++.+ .++.++.+|..+..+
T Consensus 64 ~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~-V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCc-EEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence 445677784 8999999999999999999999886 5667 999998 8888887753 688899999877643
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. .|+|++..++++.++ ++.+.|||||+|++.
T Consensus 142 ~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred ccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 2 399999999998764 456789999999884
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=3.7e-13 Score=103.47 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=76.5
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCCc--cEEEeccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAA--DAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~~--D~v~~~~v 165 (254)
...|||||||+|.++..+++.+|+.. ++++|+ +.++..+... .+|.++.+|+... ++.. |.|++.+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~-~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCc-EEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 45799999999999999999999999 999998 7777665432 6899999998653 4443 88888776
Q ss_pred cccCCHHH------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDDE------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~~------~~~il~~~~~~L~pgG~l~i~d 195 (254)
........ ...+|+.++++|||||.|++..
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 65432221 1479999999999999998853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=2.3e-13 Score=108.83 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=91.1
Q ss_pred CchHHHHHHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC
Q 025363 66 IPEMNGLMRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS 139 (254)
Q Consensus 66 ~~~~~~~~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~ 139 (254)
.|.... |...|...+..+ +..++..++ ..++.+|||+|||+|.++..+++.. |+.+ ++.+|. +++++.+++
T Consensus 70 ~p~~~d-~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~-V~~vD~~~~~~~~A~~ 146 (266)
T d1o54a_ 70 IPSLID-EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAES 146 (266)
T ss_dssp CCCHHH-HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHH
T ss_pred CCCHHH-HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Confidence 344433 445665555533 445788885 9999999999999999999999985 6788 999999 888888875
Q ss_pred C-------CCcEEEeCCCCCCCCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 140 I-------PGVTHIGGDMFKSIPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 140 ~-------~~i~~~~~d~~~~~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ .++.+..+|+...++.. |.|++ +.++. .++|++++++|||||+|++..+
T Consensus 147 ~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 147 NLTKWGLIERVTIKVRDISEGFDEKDVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp HHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred HHHHhccccCcEEEeccccccccccceeeeEe-----cCCCH--HHHHHHHHhhcCCCCEEEEEeC
Confidence 3 57888888876665442 77654 45433 4789999999999999998543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=1e-12 Score=110.50 Aligned_cols=113 Identities=15% Similarity=0.259 Sum_probs=87.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------------CCcEE-E
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------PGVTH-I 146 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------~~i~~-~ 146 (254)
.+..+++.++ ..++.+|||||||.|..+..+++.++..+ ++++|+ +.+++.+++. ..+.+ .
T Consensus 204 ~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~-v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 204 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 4667888884 89999999999999999999999998778 999999 8888877542 22333 3
Q ss_pred eCCCCCC------CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 147 GGDMFKS------IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 147 ~~d~~~~------~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.+++++. ++.+|+|++.+.+| . ++..+.|+++.+.|||||+|++.+...+..
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred eechhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 5566543 23358888876544 2 567899999999999999999988766543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=2.1e-13 Score=108.47 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=93.2
Q ss_pred HHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC------
Q 025363 73 MRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI------ 140 (254)
Q Consensus 73 ~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~------ 140 (254)
|-..|...+..+ +..++..++ .+++.+|||+|||+|.++..|++. .|+.+ ++.+|. +++++.++++
T Consensus 69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~-V~~~d~~~~~~~~Ar~n~~~~~~ 146 (264)
T d1i9ga_ 69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYG 146 (264)
T ss_dssp HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHHT
T ss_pred HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcE-EEEecCCHHHHHHHHHhhhhhcc
Confidence 445666666543 455778885 999999999999999999999998 57888 999999 8888887652
Q ss_pred ---CCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 141 ---PGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 141 ---~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.++.++.+|+.+. +++. |.|++ |+++. .+++.+++++|||||++++..+..
T Consensus 147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 147 QPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp SCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCCceEEEEecccccccccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 6899999999876 6653 99886 34433 478999999999999999866543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=3.5e-13 Score=109.61 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CC--Cc-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IP--AA- 157 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p--~~- 157 (254)
..+..+|||||||+|..+..|+++ +.+ ++++|+ +.|++.+++. .+..+...|+... .| +.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~-v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCe-eeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence 445679999999999999999987 467 999999 9999877542 2345566666432 22 23
Q ss_pred cEEEe-ccccccCCH-----HHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 DAIFM-KWVLTTWTD-----DECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 D~v~~-~~vlh~~~~-----~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|+|++ ..+++++++ ++...+|++++++|||||+|++.
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 87775 568887754 46788999999999999998884
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.7e-12 Score=101.22 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=92.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-c-cEEEecc--
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-A-DAIFMKW-- 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~-D~v~~~~-- 164 (254)
....+|||+|||+|..+..++..+|+.+ ++++|. +..++.++++ .+|+|+.+|+++.++. . |+|+++-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~-v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcce-eeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchh
Confidence 4567899999999999999999999999 999999 8888887764 5799999999998665 3 9999842
Q ss_pred c-----------ccc------CCH----HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc
Q 025363 165 V-----------LTT------WTD----DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 223 (254)
Q Consensus 165 v-----------lh~------~~~----~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
+ +.+ ... .-..++++++.+.|+|||.+++ |...
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~------------------------- 239 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW------------------------- 239 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS-------------------------
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc-------------------------
Confidence 1 111 000 2345789999999999999887 3210
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeE
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
...+.+.++++++||+.+++
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCE
T ss_pred -----hHHHHHHHHHHHCCCCeEEE
Confidence 12345678899999986654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.29 E-value=6.7e-12 Score=96.28 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=73.8
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCCc--cEEEeccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAA--DAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~~--D~v~~~~v 165 (254)
...|||||||+|.++..+++.+|+.. ++++|+ +.++..+.+. ++|.+..+|+.+- ++.. |.|++.+.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~-~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCc-eEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 45799999999999999999999999 999998 7777665432 7899999998653 4543 88776543
Q ss_pred cccCCHHH-------HHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDE-------CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~-------~~~il~~~~~~L~pgG~l~i~ 194 (254)
-. |+... ...+|+.++++|||||.|.+.
T Consensus 111 dP-w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 111 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cc-ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 32 33221 147899999999999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.1e-12 Score=99.06 Aligned_cols=100 Identities=22% Similarity=0.149 Sum_probs=79.4
Q ss_pred HHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCC
Q 025363 86 TSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMF 151 (254)
Q Consensus 86 ~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~ 151 (254)
..+++.+. ..+++.+|||||||+|..+..+++.. |..+ ++.+|. +++++.++++ .++.++.+|..
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~-V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCce-EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 44556552 36789999999999999999998864 5667 999998 8888877542 57899999988
Q ss_pred CCCC-Cc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 152 KSIP-AA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 152 ~~~p-~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
...+ .+ |+|++..++++.++ .+.+.|||||+|++.
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred cccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 7643 33 99999999987753 467889999999984
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.18 E-value=1.8e-11 Score=95.01 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=77.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCCCCC---c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA---A 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~~p~---~ 157 (254)
..+++.++ .+++.+|||||||+|..+..+++.. .+ ++.+|. +++.+.+++ ..++.++.+|.....++ .
T Consensus 60 a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cc-cccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhH
Confidence 44677775 8999999999999999999888874 35 888898 777776654 37899999998776443 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|+|++...+++.++ .+.+.|||||+|++.
T Consensus 136 D~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 99999888887753 456789999999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.3e-11 Score=100.91 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=91.3
Q ss_pred CchHHHHHHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC
Q 025363 66 IPEMNGLMRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS 139 (254)
Q Consensus 66 ~~~~~~~~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~ 139 (254)
.|.. ..|...|...+..+ +..|+..++ ..++.+|||+|||+|.++..|++.. |+.+ ++.+|. +++++.+++
T Consensus 65 ~Pt~-~d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~-V~t~E~~~~~~~~A~~ 141 (324)
T d2b25a1 65 RPAL-EDYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKK 141 (324)
T ss_dssp CCCH-HHHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHH
T ss_pred CCCH-HHHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcE-EEEecCCHHHHHHHHH
Confidence 3443 34556676666643 445788885 9999999999999999999999984 7778 999999 888877653
Q ss_pred C-----------------CCcEEEeCCCCCC---CCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 140 I-----------------PGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 140 ~-----------------~~i~~~~~d~~~~---~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+ .++.+..+|+.+. ++. .|.|++ ++++. ..+|.+++++|||||+|++.-+.
T Consensus 142 n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 142 NYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp HHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred HHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCC
Confidence 1 5799999998765 233 288876 33322 35799999999999999986544
Q ss_pred c
Q 025363 198 L 198 (254)
Q Consensus 198 ~ 198 (254)
+
T Consensus 215 i 215 (324)
T d2b25a1 215 I 215 (324)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=8.9e-11 Score=89.27 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=74.3
Q ss_pred CCCCeEEEecCcccHHH----HHHHHHcC----CCCeEEEeec-hHHHhhCCCC--------------------------
Q 025363 96 KGVKRLVDVGGSAGDCL----RMILQKHR----FICEGINFDL-PEVVAEAPSI-------------------------- 140 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~----~~l~~~~~----~~~~~~~~D~-~~~~~~~~~~-------------------------- 140 (254)
.+..+|+++|||+|.-+ +.+.+... ..+ +++.|+ +.+++.++..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~-I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceE-EEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 34679999999999954 33343322 335 788898 8888766521
Q ss_pred -----------CCcEEEeCCCCCC-C-C-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 -----------PGVTHIGGDMFKS-I-P-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 -----------~~i~~~~~d~~~~-~-p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
..+.+...+.... . + .. |+|+|+++|+.++++...+++++++++|+|||.|++..
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 2356666777665 2 2 23 99999999999999999999999999999999998853
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=6.4e-11 Score=97.04 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC-------CCCcEEEeCCCCCC-CCC-c-cEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-A-DAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~-------~~~i~~~~~d~~~~-~p~-~-D~v~~~~vl 166 (254)
++.+|||||||+|.++..++++.+ .+ ++++|..++...+++ .++|.++.+|+.+. .+. . |+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~-V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CE-EEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 478999999999999998888643 35 889998333222221 27799999999886 553 3 999887666
Q ss_pred ccCCH-HHHHHHHHHHHHhCCCCCEEEE
Q 025363 167 TTWTD-DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 167 h~~~~-~~~~~il~~~~~~L~pgG~l~i 193 (254)
+.... .....++..+.+.|||||+++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65433 3567899999999999999863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.05 E-value=1.3e-10 Score=89.50 Aligned_cols=99 Identities=27% Similarity=0.264 Sum_probs=79.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~- 156 (254)
...+++.++ .+++.+|||||||+|..+.-+++... .+ ++.+|. +++.+.+++. .++.++.+|..+..+.
T Consensus 67 ~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 67 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ce-eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 456777885 89999999999999999998887653 56 888888 7777777643 7899999999886443
Q ss_pred c--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 A--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+ |.|++...+...++ .+.+.|+|||+|++.
T Consensus 144 ~pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred CcceeEEeecccccCCH--------HHHHhcCCCCEEEEE
Confidence 3 99999998887754 355679999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=8.8e-11 Score=96.68 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC-------CCCcEEEeCCCCCC-CCC-c-cEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-A-DAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~-------~~~i~~~~~d~~~~-~p~-~-D~v~~~~vl 166 (254)
++.+|||||||+|.++..++++.. .+ ++++|..++...+++ ..+|.++.+|+.+. +|. . |+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~-V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CE-EEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 478999999999999988877643 35 899998545444432 26899999999876 554 3 999987666
Q ss_pred ccCCH-HHHHHHHHHHHHhCCCCCEEE
Q 025363 167 TTWTD-DECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 167 h~~~~-~~~~~il~~~~~~L~pgG~l~ 192 (254)
+.... .....++..+.+.|||||+++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 65433 346678999999999999875
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.6e-10 Score=93.13 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=73.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC------CCCCcEEEeCCCCCC-CCC-c-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKS-IPA-A-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~------~~~~i~~~~~d~~~~-~p~-~-D~v~~~~ 164 (254)
..++++|||||||+|.++..++++.+ .+ ++++|. +.+....+ ...+|.++.+|+.+. .+. . |+|++..
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~-V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 110 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CE-EEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence 44578999999999999999888754 35 999998 54432211 127899999999886 553 3 9999877
Q ss_pred ccccCCHH-HHHHHHHHHHHhCCCCCEEEE
Q 025363 165 VLTTWTDD-ECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 vlh~~~~~-~~~~il~~~~~~L~pgG~l~i 193 (254)
..|....+ ....++....+.|||||+++-
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 77765444 456778888899999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=3e-10 Score=88.05 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=78.1
Q ss_pred HHHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHc------CCCCeEEEeec-hHHHhhCCCC-----------CCcEE
Q 025363 85 MTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKH------RFICEGINFDL-PEVVAEAPSI-----------PGVTH 145 (254)
Q Consensus 85 ~~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~------~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~ 145 (254)
...+++.+. ..+++.+|||||||+|..+.-+++.. +..+ ++.+|. +++.+.++++ .+|.+
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~-V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccE-EEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 344566652 37789999999999999998888764 2346 899998 8887777542 58999
Q ss_pred EeCCCCCCCC-C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 146 IGGDMFKSIP-A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 146 ~~~d~~~~~p-~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
..+|..+..+ . .|.|++...+...++ .+.+.|||||+|++.
T Consensus 146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred EecccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9999987643 3 399999999887753 467899999999884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=2e-10 Score=86.87 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=87.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC----
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---- 153 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---- 153 (254)
+.+++++.+. ..++..+||++||+|..+..+++++|+.+ ++++|. +++++.+++. .|+.++.++|.+.
T Consensus 11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~-vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCe-EEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 4667788884 78889999999999999999999999999 999999 9999887653 6899999998652
Q ss_pred --CCC--ccEEEecccccc----C---CHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 154 --IPA--ADAIFMKWVLTT----W---TDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 154 --~p~--~D~v~~~~vlh~----~---~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.+. .|.|++-..+.. . .-....+.|..+.++|+|||++++..+..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 122 287776433210 0 11345688999999999999999987654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=6.8e-10 Score=88.05 Aligned_cols=120 Identities=15% Similarity=0.024 Sum_probs=88.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
.+++.+|||+|||+|.++..++++ +..+ ++++|+ |..++.++++ ++|++..+|+.+..+. +|.|++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~-V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~ 182 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 182 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcE-EEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC
Confidence 457899999999999999999987 4457 999999 8887776643 6799999999887554 49988753
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
.- ....+|..+.+.|+|||.|.+.+....+. ......+.+.++.+..|++
T Consensus 183 p~------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~------------------------~~~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 183 VV------RTHEFIPKALSIAKDGAIIHYHNTVPEKL------------------------MPREPFETFKRITKEYGYD 232 (260)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG------------------------TTTTTHHHHHHHHHHTTCE
T ss_pred CC------chHHHHHHHHhhcCCCCEEEEEecccccc------------------------chhhHHHHHHHHHHHcCCc
Confidence 32 22467888899999999987765532211 0112345567788888987
Q ss_pred ee
Q 025363 245 HL 246 (254)
Q Consensus 245 ~~ 246 (254)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 53
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=8.6e-09 Score=79.21 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---------ccE
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---------ADA 159 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---------~D~ 159 (254)
..+|||||||+|..+..++++.+ +.+ ++.+|. +++.+.++.. ++|+++.||..+.+|. .|+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~-v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccE-EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 67999999999999999999875 567 999998 8777776543 6799999998765321 288
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|++-+ ..........+.++.+.|||||.+++-+..++
T Consensus 136 ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~ 172 (214)
T d2cl5a1 136 VFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLADNVIVP 172 (214)
T ss_dssp EEECS---CGGGHHHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred eeecc---cccccccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence 88752 11112233457777889999997666444443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.58 E-value=2.3e-08 Score=72.60 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---CC-ccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---PA-ADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p~-~D~v~~~~ 164 (254)
.+.+|||+|||+|.++.+.+.+... + ++.+|. +.+++.+++. ++++++.+|..+.+ .. .|+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~-v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-A-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-E-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-e-eeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 5789999999999999998887543 6 999998 7777655432 67999999987652 22 39998843
Q ss_pred ccccCCHHHHHHHHHHHHH--hCCCCCEEEEE
Q 025363 165 VLTTWTDDECKLIMENCYK--ALPAGGKLIAC 194 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~ 194 (254)
-.. ......++..+.+ .|+|||.+++.
T Consensus 92 Py~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 PYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 221 2444566776654 58999998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.3e-08 Score=76.95 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=75.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC--------CC-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI--------PA-A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~--------p~-~ 157 (254)
.+.++|||||+|+|..+..+++..| +.+ ++.+|. ++..+.+++. ++++++.||+.+.+ +. .
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~-i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCce-EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 3478999999999999999999987 567 899998 7776666542 78999999986642 22 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++.+ ..+.-...++.+.+.|+|||.+++-+..+.
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 8888843 223446778999999999999988766554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=2.3e-08 Score=81.70 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=74.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC------CC-ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PA-ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~------p~-~D~ 159 (254)
.+++.+|||++||+|.++..+++... .+ ++.+|+ +..++.++++ ++++++.+|+++.. .. .|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~-V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~ 220 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI 220 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cE-EEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence 46789999999999999999887743 36 999999 8888877653 57899999988752 12 399
Q ss_pred EEecc---ccccCCHH----HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKW---VLTTWTDD----ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~---vlh~~~~~----~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.- ..+.-... .-.+++..+.++|+|||.|+.+..
T Consensus 221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99832 22211111 234588899999999999998764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.7e-07 Score=72.35 Aligned_cols=72 Identities=8% Similarity=-0.051 Sum_probs=56.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-------CC--cc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-------PA--AD 158 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-------p~--~D 158 (254)
.+..++||+|||+|..+..+++++|+++ ++++|+ +..++.++++ .++.+...+..+.+ .+ .|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~-~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCcc-ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 4457999999999999999999999999 999999 8888887754 67888775544431 12 39
Q ss_pred EEEecccccc
Q 025363 159 AIFMKWVLTT 168 (254)
Q Consensus 159 ~v~~~~vlh~ 168 (254)
+|+++=-.+.
T Consensus 139 ~ivsNPPY~~ 148 (250)
T d2h00a1 139 FCMCNPPFFA 148 (250)
T ss_dssp EEEECCCCC-
T ss_pred EEEecCcccc
Confidence 9999777664
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=2.3e-08 Score=81.03 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------CCCcEEEeCCCCCCC---CC-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI---PA-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~~~i~~~~~d~~~~~---p~-~D~ 159 (254)
+..++||.||+|.|..+..+++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+.+ +. .|+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcce-EEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 4568999999999999999998877777 999999 888876653 278999999998862 33 399
Q ss_pred EEeccc--cccCCH-H--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWV--LTTWTD-D--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~v--lh~~~~-~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++-.. ...-.. . -..++++.|++.|+|||.+++.-
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 996321 111000 0 12578999999999999988743
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.46 E-value=6.2e-08 Score=73.08 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCCccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPAADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~~D~v~~~~v 165 (254)
.+.+|||+|||+|.++..++...+ .+ ++++|. +.+++.++++ .+++++.+|+.+.....|+|+++=-
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~-V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ES-VTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SE-EEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-Cc-ccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence 378999999999999988777643 36 999999 8888877765 7899999998653333499998643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=6.6e-08 Score=78.66 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---C---CC-ccEEEe
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---I---PA-ADAIFM 162 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~---p~-~D~v~~ 162 (254)
.+.+|||++||+|.++..+++. ..+ ++.+|. +.+++.++++ .+++++.+|.++. . .+ .|+|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCc-EEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999998764 346 999999 8888887754 5789999998764 1 12 399997
Q ss_pred ccccccCC-------HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWT-------DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~-------~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.---..-+ -..-.++++.+.++|+|||.|+.+..
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32111000 12234689999999999999988654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.38 E-value=9.8e-08 Score=73.66 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---------C-c
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------A-A 157 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------~-~ 157 (254)
+.++|||||+++|..+..+++..| +.+ ++.+|. ++..+.+++. ++|+++.+|+.+.++ . .
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~-v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcE-EEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 478999999999999999999987 567 888998 7666665542 689999999976532 1 3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++-. ........++.+.+.|+|||.+++-+..+.
T Consensus 138 D~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~~ 174 (227)
T d1susa1 138 DFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLWN 174 (227)
T ss_dssp SEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred eEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 9999843 223456889999999999999888666543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=2e-07 Score=73.70 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=53.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC----ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA----ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~----~D~v~~~ 163 (254)
+..+++|+|||+|..+..++ ++|+.+ ++++|. +..++.++++ .++.+..+|+++..+. .|+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~-v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccce-eeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 35689999999999999987 578999 999999 8888877753 5788999999887442 3999884
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=9.4e-08 Score=76.52 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v 160 (254)
+...+||-||+|.|..+..+++..+..+ ++++|+ |.+++.+++. +|++++.+|..+.+ +. .|+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 3468999999999999999998776667 999999 8888877642 79999999998763 22 3999
Q ss_pred EeccccccCCHHH---HHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDDE---CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~~---~~~il~~~~~~L~pgG~l~i~d 195 (254)
++-..-..-.... ..++++.+++.|+|||.+++.-
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 9742211100000 2578999999999999988753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.34 E-value=3.4e-07 Score=71.39 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=68.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~ 157 (254)
.++.+++..+ ..++.+|||||||+|.++..|++... + ++++|. +.+++.+++. ++++++.+|+.+. ++..
T Consensus 17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~-v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--Q-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--E-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--c-eeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence 5677888884 88899999999999999999999843 5 888998 6676666653 6799999999986 6654
Q ss_pred -cEEEeccccccCCHHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLI 177 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~i 177 (254)
+..++.+.=.+++.+-..++
T Consensus 93 ~~~~vv~NLPY~Ist~il~~~ 113 (245)
T d1yuba_ 93 QRYKIVGNIPYHLSTQIIKKV 113 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHHH
T ss_pred eeeeEeeeeehhhhHHHHHHH
Confidence 56566666667775433333
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.31 E-value=1.5e-07 Score=74.95 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=71.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------------CCCcEEEeCCCCCCC--CC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------------IPGVTHIGGDMFKSI--PA 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------------~~~i~~~~~d~~~~~--p~ 156 (254)
.+..+||-||+|.|..+..+++ ++..+ ++++|+ |.+++.+++ .+|++++.+|..+.+ ..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCce-EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 4568999999999999999986 45557 999999 888877642 378999999987653 22
Q ss_pred -ccEEEeccccccCCHHH---HHHHHHHHHHhCCCCCEEEEE
Q 025363 157 -ADAIFMKWVLTTWTDDE---CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~---~~~il~~~~~~L~pgG~l~i~ 194 (254)
.|+|++-.. ...+... ..++++.|++.|+|||.+++.
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 399987332 2222111 257899999999999998774
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=3.2e-07 Score=73.73 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC------C-cc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP------A-AD 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p------~-~D 158 (254)
...+.+|||+.||+|.++..+++. +.+ ++.+|. +..++.++++ .+++|+.+|+++.+. . .|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD 206 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD 206 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCe-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence 445789999999999999998876 567 999999 8888877653 469999999987631 2 39
Q ss_pred EEEec---cccc----cCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 159 AIFMK---WVLT----TWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 159 ~v~~~---~vlh----~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+|++- ..-. .|. .+....+++.++++|+|||.+++...
T Consensus 207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 99982 1111 122 23345677889999999997776554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.29 E-value=6.7e-07 Score=69.28 Aligned_cols=92 Identities=7% Similarity=0.155 Sum_probs=66.9
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC----CCCCcEEEeCCCCCC-CCC
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP----SIPGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~----~~~~i~~~~~d~~~~-~p~ 156 (254)
.+++.+++..+ ..++.+|||||||+|.++..|++... + ++++++ +.+.+..+ ..++++++.+|+.+. ++.
T Consensus 8 ~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~-v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--F-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--E-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--c-eEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 35677888884 88899999999999999999999854 4 888887 66655443 337899999999986 555
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCY 182 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~ 182 (254)
. ...+..+.=++.+ ..++.++.
T Consensus 84 ~~~~~vv~NLPYnIs----s~il~~ll 106 (235)
T d1qama_ 84 NQSYKIFGNIPYNIS----TDIIRKIV 106 (235)
T ss_dssp SCCCEEEEECCGGGH----HHHHHHHH
T ss_pred cccceeeeeehhhhh----HHHHHHHH
Confidence 4 5555555544443 34555554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=1.6e-07 Score=74.53 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=73.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v 160 (254)
....+||-||+|.|..+..+++..+..+ ++++|+ |++++.+++ .+|++++.+|..+.+ ++ .|+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~-i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcce-EEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 4568999999999999999998766667 999999 888877653 279999999987752 23 3999
Q ss_pred Eeccc------cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMKWV------LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~~v------lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
++-.. .+-+ ..++++.+++.|+|||.++..
T Consensus 153 i~D~~~p~~~~~~L~----t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLF----TKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EESCSSCCSCCCCCS----TTHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcchhhc----cHHHHHHHHhhcCCCceEEEe
Confidence 86421 1112 247899999999999998875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.25 E-value=3.2e-07 Score=74.34 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC------CC-cc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI------PA-AD 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~------p~-~D 158 (254)
..++.+|||+.||+|.++...+... ... ++.+|+ +..++.++++ .+++++.+|+++.+ .. .|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~-V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD 219 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD 219 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-Cce-EEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence 4568899999999999998876642 235 889998 7676665532 57899999998753 12 29
Q ss_pred EEEec--------cccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 159 AIFMK--------WVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 159 ~v~~~--------~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+|++- .-++.. ..+-.++++.+.++|+|||.|+++..
T Consensus 220 ~Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 220 IIIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99982 111111 12345799999999999999988553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.5e-07 Score=73.81 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~~---p~-~D~v 160 (254)
+..++||-||+|.|..+..+++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+.+ ++ .|+|
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~-v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcce-eeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 4568999999999999999997766667 999999 888887764 279999999987762 23 3999
Q ss_pred EeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++-. .+..... -..++++.|++.|+|||.+++.-
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 9742 2211111 12367999999999999988753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=1.3e-06 Score=65.97 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=51.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~D~v~~~~vl 166 (254)
.+.+|||+|||+|.++..++.+.+ .+ ++++|+ +.+++.++++ .++++..+|..+.....|+|++.--.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~-v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CE-EEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 467999999999999998876643 46 999999 7777766643 56788888886543335999985443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.20 E-value=3e-07 Score=73.94 Aligned_cols=98 Identities=21% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAI 160 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v 160 (254)
+...+||-||+|.|..+..+++..+-.+ ++.+|+ +.+++.+++. +|++++.+|..+.+ +. .|+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~-v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcce-EEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 4467999999999999999998766556 999999 8888876541 78999999988763 23 3999
Q ss_pred EeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 161 FMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 161 ~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++-.. ...... -..++++.+++.|+|||.++..-
T Consensus 184 I~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 184 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 97322 111111 13578999999999999988853
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.18 E-value=5.1e-07 Score=72.16 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=74.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------CCCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~~~i~~~~~d~~~~---~p~--~D~ 159 (254)
+...+||=||+|.|..+.++++..|-.+ ++.+|+ |++++.+++ .+|++++.+|..+. .++ .|+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhccccee-eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 4567999999999999999998766566 999999 888887764 28999999998765 233 399
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++-.. .-.... -..++++.+++.|+|||.+++.-
T Consensus 158 Ii~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 158 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 997322 111111 12578999999999999998854
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=3e-07 Score=67.82 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=59.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CC-C-ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IP-A-ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p-~-~D~v~ 161 (254)
...+.+|||+|||+|.++.+.+.+ +.+ ++.+|. +.+++.++++ .++.....|.+.. .. + .|+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cch-hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence 456789999999999999998887 456 888999 8888777653 3444444443322 12 2 39999
Q ss_pred eccccccCCH-HHHHHHHHHHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTD-DECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+.=-.+ ... +....+++ ...|+|||.+++.
T Consensus 116 ~DPPY~-~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 116 MAPPYA-MDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp ECCCTT-SCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred Eccccc-cCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 842222 111 22223332 3578999987764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.2e-05 Score=59.31 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=74.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--------C
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------P 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~--------p 155 (254)
.+|.+.|.-++++.+|||+||++|.++..+.+..+. .. ++++|+..+ ...+.+.++.+|+.+. . .
T Consensus 11 ~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~-v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccce-EEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 346666655678899999999999999999987654 55 899997332 2337789999999774 1 1
Q ss_pred C--ccEEEeccccccCC----HH-----HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A--ADAIFMKWVLTTWT----DD-----ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~----~~-----~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. .|+|++-.....-. |+ -+...+.-+.+.|+|||.+++=-+
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 1 39988755443211 11 133567778889999999887443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.08 E-value=1.3e-05 Score=61.55 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=63.9
Q ss_pred CCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhC-CCCCCcEEEeCCCCCC--C---CC--ccEEEecc
Q 025363 98 VKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEA-PSIPGVTHIGGDMFKS--I---PA--ADAIFMKW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~-~~~~~i~~~~~d~~~~--~---p~--~D~v~~~~ 164 (254)
..+|||||++.|..+..+++. .++.+ ++.+|+ +...... ...++|+++.+|..+. + .. .|+|++-.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~k-I~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCce-EEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 568999999999877765543 35677 899998 4433222 1238999999998654 2 22 28877744
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. |.. +....-+ .....|+|||+++|-|..
T Consensus 160 ~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 160 A-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp S-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred C-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 3 653 3223334 467899999999997753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.07 E-value=9.1e-06 Score=61.90 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC-Cc-cEEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP-AA-DAIF 161 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p-~~-D~v~ 161 (254)
++-+++... ..++.+|||.|||+|.++..+.++.+....+.++|+ +.....+ .+..+..+|++...+ .. |+++
T Consensus 8 ~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii 83 (223)
T d2ih2a1 8 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLIL 83 (223)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEE
T ss_pred HHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceec
Confidence 344555553 567789999999999999999888765433888898 4433222 345677788877633 23 8888
Q ss_pred eccccccCC--H-------H------------------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWT--D-------D------------------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~--~-------~------------------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
..-...... . . -...++.++.+.|+|||+++++-
T Consensus 84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 754432110 0 0 12356788899999999987754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1e-06 Score=65.67 Aligned_cols=92 Identities=7% Similarity=-0.016 Sum_probs=66.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---C-ccEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---A-ADAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---~-~D~v~~~~vl 166 (254)
+.+|||++||+|.++.+.+.+... . ++.+|. +..++.++++ .++.++..|+++.+. . .|+|++-=-.
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~-v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-G-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-e-eEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 679999999999999999988543 5 899998 7777655542 578889999876522 2 3999995433
Q ss_pred ccCCHHHHHHHHHHHHH--hCCCCCEEEEE
Q 025363 167 TTWTDDECKLIMENCYK--ALPAGGKLIAC 194 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~--~L~pgG~l~i~ 194 (254)
.. ....+++..+.+ .|+|+|.+++.
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 22 223456666655 58999987774
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=2.8e-06 Score=64.22 Aligned_cols=92 Identities=11% Similarity=0.064 Sum_probs=71.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hH---HHhhCC---CCCCcEEEeCCCCCCCCC--ccEEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PE---VVAEAP---SIPGVTHIGGDMFKSIPA--ADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~---~~~~~~---~~~~i~~~~~d~~~~~p~--~D~v~~~~vlh~ 168 (254)
..+|+|||+|.|.-+..++-.+|+.+ ++.+|. .. .++.+. ...+++++.....+..+. .|+|+++.+-
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~-~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred CCceeeeeccCCceeeehhhhcccce-EEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 56999999999999999999999999 999996 32 222211 126899999888776443 4998887763
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
....+++-+...++++|++++.-.
T Consensus 143 ----~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 143 ----SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEECC
Confidence 235788999999999999998753
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.96 E-value=1e-05 Score=59.90 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=80.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC---CC--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS---IP-- 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~---~p-- 155 (254)
+.+++++.+. ..++..++|..+|.|..+..++++ +.+ ++++|. |+++..++.. +++.++.+++.+- ++
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~-viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCc-EEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 4567777774 788899999999999999999997 457 999999 8887766543 7899999887653 11
Q ss_pred --C-ccEEEecccc-----ccCCH--HHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 --A-ADAIFMKWVL-----TTWTD--DECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 --~-~D~v~~~~vl-----h~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+ .|.|++-.-+ .+-.. ......|......|+|||++++..+.
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 1 2777763322 11100 13445789999999999999987763
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.91 E-value=3.5e-05 Score=59.01 Aligned_cols=107 Identities=11% Similarity=-0.038 Sum_probs=67.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeech-HH--HhhCCC-C--CCcEEEeCCCCCCCC-C-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EV--VAEAPS-I--PGVTHIGGDMFKSIP-A- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~-~~--~~~~~~-~--~~i~~~~~d~~~~~p-~- 156 (254)
...+.+.+ .+.+..+|+|+|||.|.++..++.+.+... +.++++. .- ...... . +-+++...+.....+ .
T Consensus 55 l~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~-V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~ 132 (257)
T d2p41a1 55 LRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 132 (257)
T ss_dssp HHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCc-eeEEEecCccccCCccccccccccccchhhhhHHhcCCCc
Confidence 34566666 488889999999999999999988865545 6666651 10 000001 1 335666665555533 3
Q ss_pred ccEEEeccccccCC----HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 157 ADAIFMKWVLTTWT----DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 ~D~v~~~~vlh~~~----~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.|+|++--.-+.-+ .....++|+-+.+.|+|||.+++
T Consensus 133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 49999864332111 12234678888899999998776
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.90 E-value=2.6e-06 Score=63.27 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=67.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-----CC--ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-----PA--ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-----p~--~D~ 159 (254)
...+.+|||+.||+|.++.+.+.+... . ++.+|. +.+++.++++ .++++..+|+++.+ .. .|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~-~-v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl 116 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMD-K-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 116 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCEEEEcccccccccceeeecchh-H-HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence 345789999999999999999988532 4 888998 7777666543 57999999987642 11 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHH--hCCCCCEEEE
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYK--ALPAGGKLIA 193 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~--~L~pgG~l~i 193 (254)
|++-=-.. ......+|..+.+ .|+|+|.+++
T Consensus 117 IflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 117 VLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 99843222 1234566777755 6899997665
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.88 E-value=7.4e-06 Score=66.48 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-----CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC--ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-----RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA--ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-----~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~--~D~v~ 161 (254)
..++.+|+|.+||+|.++..+.++. +... ++++|+ +.++..++.. ....+..+|.+...+. .|+|+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~-~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVI 193 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccce-EEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence 4567899999999999999987653 3335 788998 7776655432 5677788888776443 39999
Q ss_pred ecccccc-CCHHH---------------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTT-WTDDE---------------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~-~~~~~---------------~~~il~~~~~~L~pgG~l~i~d 195 (254)
+.--+.. +.++. -..++.++.+.|+|||+++++-
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 8644321 11111 1236999999999999877643
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=7.4e-05 Score=58.80 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=64.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----C---CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----I---PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~---~~i~~~~~d~~~~-~ 154 (254)
.++.|++..+ ..++..|||||+|.|.++..|+++.. + +++++. +.+++..++ . .+++++.+|+.+. +
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~-v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--c-EEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 5667788774 77888999999999999999999864 4 777777 555444332 1 5799999999987 5
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHh
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKA 184 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~ 184 (254)
|..+.|+.+- |..-...++.++...
T Consensus 85 ~~~~~vV~NL-----PY~Iss~il~~~~~~ 109 (278)
T d1zq9a1 85 PFFDTCVANL-----PYQISSPFVFKLLLH 109 (278)
T ss_dssp CCCSEEEEEC-----CGGGHHHHHHHHHHC
T ss_pred hhhhhhhcch-----HHHHHHHHHHHHHhh
Confidence 6556655432 223334566665544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1.4e-05 Score=62.19 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=53.3
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS 153 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~ 153 (254)
.+++.+++... ..++..|||||||+|.++..|++... + ++++++ +.+++..+.. ++++++.+|+.+.
T Consensus 8 ~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~-v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 8 FVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--Q-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--C-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--c-eEEEEeccchhHHHHHHhhhccchhHHhhhhhhh
Confidence 35667888874 77889999999999999999998854 5 888888 6666554432 7899999999874
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.49 E-value=3.3e-05 Score=59.43 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=69.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hH---HHhhCCC---CCCcEEEeCCCCCC-----CCC-ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PE---VVAEAPS---IPGVTHIGGDMFKS-----IPA-ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~---~~~~~~~---~~~i~~~~~d~~~~-----~p~-~D~v~ 161 (254)
++...+++|||+|.|.-+.-++=.+|+.+ ++.+|. .. .+..+.. ..++.++...+.+. ..+ .|+|+
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~-v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCcc-ceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEE
Confidence 44567999999999999999999999999 999996 32 2222211 25677776655332 122 39999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.+- ....+++-+...+++||++++...
T Consensus 147 sRAva------~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 147 ARAVA------RLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp EECCS------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred Ehhhh------CHHHHHHHHhhhcccCCEEEEECC
Confidence 98654 235789999999999999988653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.28 E-value=0.006 Score=49.23 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCCCeEEEecCcccHHH-------HH-HHHH--------cCCCCeEEEeechH-----HHhhCCCC----CC--cEEEeC
Q 025363 96 KGVKRLVDVGGSAGDCL-------RM-ILQK--------HRFICEGINFDLPE-----VVAEAPSI----PG--VTHIGG 148 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~-------~~-l~~~--------~~~~~~~~~~D~~~-----~~~~~~~~----~~--i~~~~~ 148 (254)
....+|.|+||.+|..+ +. +.++ -|..+ +..=|+|. +....... ++ +.-+.|
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~q-vf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpG 128 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEE-EEeCCCCcchHHHHHHhccccccCCCCeEEEecCC
Confidence 34578999999999866 22 2222 13334 66667763 12222111 22 445789
Q ss_pred CCCCC-CCCc--cEEEeccccccCCH-------------------------------HHHHHHHHHHHHhCCCCCEEEEE
Q 025363 149 DMFKS-IPAA--DAIFMKWVLTTWTD-------------------------------DECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 149 d~~~~-~p~~--D~v~~~~vlh~~~~-------------------------------~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+|... +|.. +++++++.+|-++. ++-..+|+.=++-|+|||++++.
T Consensus 129 SFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred chhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99998 7875 99999999986541 13335888888899999999997
Q ss_pred ccccCC
Q 025363 195 EPVLPD 200 (254)
Q Consensus 195 d~~~~~ 200 (254)
-...++
T Consensus 209 ~~gr~~ 214 (359)
T d1m6ex_ 209 ILGRRS 214 (359)
T ss_dssp EEECSS
T ss_pred EeccCC
Confidence 766544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.11 E-value=0.00025 Score=59.34 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-------------CCeEEEeec-hHHHhhCCC--------CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-------------ICEGINFDL-PEVVAEAPS--------IP 141 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-------------~~~~~~~D~-~~~~~~~~~--------~~ 141 (254)
+++-+++.++ ..+..+|+|-+||+|.++....++... .. ..++|. +.+...++. ..
T Consensus 150 Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~-l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 150 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhh-hhhhhccHHHHHHHHhhhhhcCCccc
Confidence 4556667764 566789999999999999988776421 24 677887 555444331 14
Q ss_pred CcEEEeCCCCCCCCC--ccEEEecccccc--CC-------------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 142 GVTHIGGDMFKSIPA--ADAIFMKWVLTT--WT-------------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 142 ~i~~~~~d~~~~~p~--~D~v~~~~vlh~--~~-------------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
......+|.+...+. .|+|++.=-+.. +. ...-..++.++.+.|+|||+++++-
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 566778888876443 399998544421 10 0112468999999999999887753
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0006 Score=55.50 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-- 155 (254)
.+.+.+..+ ..+..+|+|+-||+|.++..|+++.. + ++++|. ++.++.++.+ .+++|+.+|..+.++
T Consensus 201 ~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~-V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 201 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--S-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhc-cCCCceEEEecccccccchhcccccc--E-EEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence 344445453 66788999999999999999998753 4 899998 8887777653 689999999887632
Q ss_pred ----Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 ----AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ----~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.. |+|++-=-= ..+.++++.+.+. +|.-.++|
T Consensus 277 ~~~~~~~d~vilDPPR-----~G~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 277 PWAKNGFDKVLLDPAR-----AGAAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp GGGTTCCSEEEECCCT-----TCCHHHHHHHHHH-CCSEEEEE
T ss_pred hhhhccCceEEeCCCC-----ccHHHHHHHHHHc-CCCEEEEE
Confidence 12 888872111 1122345555554 55544444
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.00 E-value=0.00031 Score=51.67 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=61.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC------CCccEEEe
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI------PAADAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~------p~~D~v~~ 162 (254)
+.+|||+-||||.++.+.+.+... . ++.+|. ...+...+++ ....+...|.++.. +..|+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~-v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-K-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecce-e-eEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 679999999999999999988532 4 888897 6555444332 34666666654421 11399998
Q ss_pred ccccccCCHHHHHHHHHHHHH--hCCCCCEEEEE
Q 025363 163 KWVLTTWTDDECKLIMENCYK--ALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~ 194 (254)
-=-... ....++|..+.+ .|+++|.+++-
T Consensus 122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 433221 234567777765 68999977763
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.78 E-value=0.0018 Score=51.61 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC--CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS--IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~--~p~- 156 (254)
.+..++ ..++.+|||+.+|.|.=+..++.... ... ++..|. +.-+...+.. .++.+...|.... ...
T Consensus 108 ~~~~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~-i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~ 185 (313)
T d1ixka_ 108 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 185 (313)
T ss_dssp HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred hhhccc-CCccceeeecccchhhhhHhhhhhcccccc-eeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 445553 67789999999999999999988765 445 788887 5544443321 5566666666543 222
Q ss_pred ccEEEe-------------ccccccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 157 ADAIFM-------------KWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 157 ~D~v~~-------------~~vlh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.|.|++ ..+...+..++. .++|+++.+.|||||+|+.+...+..
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 377776 111222333332 35889999999999999988766543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.69 E-value=0.002 Score=50.88 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=71.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCCC----------Cc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSIP----------AA 157 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~p----------~~ 157 (254)
+...|+.+|||--.-...+ ...++++ ++-+|.|++++.-++ ..+..++..|+.++++ ..
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~-~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCce-EEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 4567888999998887665 3345667 888898988763221 2456778888876521 12
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-++++-.++..++.+++.++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4677788899999999999999999999999998773
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0012 Score=51.93 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~- 156 (254)
++..++ ..++.+|||+.+|.|.=+..+++...+.+ +++.|. +.-+...+.. ..+.....|.... .+.
T Consensus 94 ~~~~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~~~-i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 94 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred cccccC-ccccceeEeccCccccchhhhhhhhhhhh-hhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccccc
Confidence 344553 67789999999999999999999877777 899997 4333322221 3344444443322 122
Q ss_pred ccEEEe------cccc-------ccCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 157 ADAIFM------KWVL-------TTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 157 ~D~v~~------~~vl-------h~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.|.|++ ..++ ..|+..+ -.++|+++.+.|||||+|+.+...+...
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 236 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 236 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence 388776 2222 2333322 2368999999999999999887766533
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.26 E-value=0.0021 Score=51.40 Aligned_cols=55 Identities=7% Similarity=-0.097 Sum_probs=41.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC---CCCCCcEEEeCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA---PSIPGVTHIGGDMFK 152 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~---~~~~~i~~~~~d~~~ 152 (254)
...+|||||+|.|.++..|+++...-+ +++++. +...+.. ...++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998753235 888887 4443333 234789999999874
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0075 Score=48.15 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------------------------CCCcEEEeCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------------------------IPGVTHIGGD 149 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------------------------~~~i~~~~~d 149 (254)
+...|+-+|||.-.....+.+.+++++ .+-+|.|++++.-+. .++..++..|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~-~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcE-EEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 356899999999999999998889888 888999887763210 1568888899
Q ss_pred CCCC--C---------CCc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 150 MFKS--I---------PAA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 150 ~~~~--~---------p~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+.+. . ++. -++++-.+|..++++++.++++.+.+..+ +|.+++.|.+.+.
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~ 236 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGS 236 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCC
Confidence 8764 1 111 47888899999999999999999999885 6778888988654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.98 E-value=0.018 Score=40.95 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred eEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEeccccccCCHHHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+|+=||||. +.++..|.+..+..+ ++++|. ++.++.+++...+.....+.... ....|+|++.- +.....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~-I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~ 76 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 76 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeE-EEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhh
Confidence 577899983 445666666666777 999998 88887776654443333333222 22359988743 556788
Q ss_pred HHHHHHHHhCCCCCEEE
Q 025363 176 LIMENCYKALPAGGKLI 192 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~ 192 (254)
++++++...++++..+.
T Consensus 77 ~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 77 EIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhcccccccccc
Confidence 99999999999886544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.88 E-value=0.0067 Score=44.65 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=67.1
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC---------CCc-cEEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI---------PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~---------p~~-D~v~ 161 (254)
..+++.+||-+|||. |..+..+++.....+ +++.|. ++-++.+++..- ....-...+++ +.+ |+++
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~-Vi~~d~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAV-VIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcccc-eeeecccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 478899999999987 667788888776667 899998 777777766422 22211111111 223 8877
Q ss_pred ecccc------c-cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 162 MKWVL------T-TWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 162 ~~~vl------h-~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
-.--. | ..........++.+.++++|||++++.-...++
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 43211 1 011112246899999999999999998765443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.37 E-value=0.074 Score=37.98 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=62.8
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC---------CCc-cEEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI---------PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~---------p~~-D~v~ 161 (254)
..+++.+|+=+|||. |..+..+++.....+ +++.|. ++-++.+++..--.++...-.+.. +.+ |+++
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~-Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASR-IIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCce-eeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 477889999999986 889999999886556 888888 666666665433333321111110 223 8877
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCC-CEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAG-GKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pg-G~l~i~d~ 196 (254)
-.-- ....+....+.++|| |++++.-.
T Consensus 104 e~~G--------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 104 DCAG--------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp ESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred Eecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence 4322 135688999999996 99998764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.026 Score=44.18 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC---C-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI---P- 155 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~---p- 155 (254)
.+..++ ..++.+|||+++|.|.=+..+++... ... ++++|. +.-+...+++ .++.+...|+.... +
T Consensus 86 ~~~~L~-~~~g~~vLD~cAapGgKt~~la~l~~~~~~-i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~ 163 (293)
T d2b9ea1 86 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 163 (293)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred cccccC-CCccceEEecccchhhHHHHHHHHhcCCce-EeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccc
Confidence 334443 56788999999999999998887754 455 889998 5544444332 66888888876531 1
Q ss_pred --CccEEEecc------ccc---------cCCH---HHH----HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 156 --AADAIFMKW------VLT---------TWTD---DEC----KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 156 --~~D~v~~~~------vlh---------~~~~---~~~----~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
..|.|++-- ++. .+++ ... .++|+++. .++|||+|+-....+..
T Consensus 164 ~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 164 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred cceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 127777621 110 1111 111 23555555 47999998887765543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.15 E-value=0.048 Score=38.45 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=55.9
Q ss_pred CeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 99 KRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 99 ~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
++|.=||+| .+.++..|.++ +.+ ++++|. ++..+.+++...+... .+..+...++|+|++. .++....
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~-V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIila-----vp~~~~~ 71 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHY-LIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLC-----TPIQLIL 71 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEEC-----SCHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCchHHHHHHHhhcccee-eeeccccccccccccc-----CcHhhhh
Confidence 356677776 44455555554 456 899998 7777766554333222 2222335566998863 3567788
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 025363 176 LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~i 193 (254)
++++++...++|+..++-
T Consensus 72 ~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhhcccccceee
Confidence 999999999998875543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.012 Score=50.19 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC----C--------------CCeEEEeec-hHHHhhCCCC---
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR----F--------------ICEGINFDL-PEVVAEAPSI--- 140 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~----~--------------~~~~~~~D~-~~~~~~~~~~--- 140 (254)
.+++-+++.++ ..++.+|+|-+||+|.++....+... . .. ..++|. +.+...++..
T Consensus 151 ~Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 151 PLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp HHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHT
T ss_pred chhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhh-hhhhccCHHHHHHHHHHHHh
Confidence 34556666664 55678999999999999988766431 1 13 678887 6554433211
Q ss_pred --------CCcEEEeCCCCCC--C--CCccEEEecccccc-C-C----------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 --------PGVTHIGGDMFKS--I--PAADAIFMKWVLTT-W-T----------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 --------~~i~~~~~d~~~~--~--p~~D~v~~~~vlh~-~-~----------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
..-.+..++.+.. . +..|+|+++=-+-. + . ...-..++.++.+.|+|||++.++-
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 1223445555543 1 22488887443311 0 0 0112358999999999999988763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.70 E-value=0.081 Score=37.87 Aligned_cols=96 Identities=15% Similarity=-0.031 Sum_probs=60.6
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC-------C-CCc-cE
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS-------I-PAA-DA 159 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~-------~-p~~-D~ 159 (254)
..+++.+||-+|+| .|.++..+++.....+ +++.|. ++-++.+++..--.++. .|..+. . +.+ |+
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAEN-VIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCCEEEEECCCccchhheeccccccccc-ccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceE
Confidence 36778999999987 5888889998875336 889997 76666665542212221 111100 0 223 88
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|+-.-.- ...++...++|+|||++++.-...
T Consensus 104 vid~vG~--------~~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 104 ILEATGD--------SRALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp EEECSSC--------TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred EeecCCc--------hhHHHHHHHHhcCCCEEEEEeecC
Confidence 7742211 245778889999999998876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.013 Score=41.80 Aligned_cols=94 Identities=17% Similarity=0.056 Sum_probs=58.0
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC-CCCC---CCCCc-cEEEec-cc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG-DMFK---SIPAA-DAIFMK-WV 165 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~-d~~~---~~p~~-D~v~~~-~v 165 (254)
..+++.+|+-+|+| .|.++..+++.. +++ ++++|. ++-++.+++..--.++.. +-.+ ...+. |+++.. ..
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAE-TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCE-EEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc-ccc-ccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 47788999999987 778888888775 578 999997 665665554321122221 1111 12233 876653 22
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+.. .+....++|+|+|++++.-.
T Consensus 102 ~~~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 102 LTDI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp STTC-------CTTTGGGGEEEEEEEEECCC
T ss_pred Cccc-------hHHHHHHHhhccceEEEecc
Confidence 2211 13467788999999998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.12 Score=36.54 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=61.4
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC----------CCC-ccEE
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS----------IPA-ADAI 160 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~----------~p~-~D~v 160 (254)
..+++.+|+=+|+| .|..+..+++.....+ +++.|. +.-++.+++..--.+...+-.+. .+. .|++
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~-Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCce-EEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence 46778899999986 4566666777665446 899998 77777666542222222211111 122 2887
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+-.-.- ...++...+.++|||++++.-...
T Consensus 102 id~~G~--------~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 102 IECTGA--------EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EECSCC--------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred EeccCC--------chhHHHHHHHhcCCCEEEEEecCC
Confidence 753321 356889999999999999977543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.27 E-value=0.058 Score=38.14 Aligned_cols=95 Identities=21% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCCCeEEEecC--cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--------CCCc-cEEE
Q 025363 94 GFKGVKRLVDVGG--SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--------IPAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~--G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--------~p~~-D~v~ 161 (254)
..+++.+|+=+|| +.|..+..+++.....+ +++.|. ++-.+.+++..--.++..+-.+. .+.. |+++
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~-V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeeccccccccc-ccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence 3778889999995 46777888888876667 888887 65555544321112222221111 1223 7777
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-...- ...++...++++|||++++.-..
T Consensus 103 d~~g~--------~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 103 DLNNS--------EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp ESCCC--------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred ccccc--------chHHHhhhhhcccCCEEEEeccc
Confidence 53221 35677888999999999988643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.093 Score=37.21 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=60.5
Q ss_pred HHhhcCCCCCCCeEEEecC--cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCCC-----CC
Q 025363 88 VLEGYNGFKGVKRLVDVGG--SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKSI-----PA 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~--G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~~-----p~ 156 (254)
+.+.. ..+++.+||-.|+ |.|..+..+++.. +++ +++.+. ++-.+.+++..--.++. .|+.+.+ +.
T Consensus 20 l~~~~-~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~-vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 20 LIHSA-CVKAGESVLVHGASGGVGLAACQIARAY-GLK-ILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp HHTTS-CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTT
T ss_pred HHHHh-CCCCCCEEEEEecccccccccccccccc-Ccc-cccccccccccccccccCcccccccccccHHHHhhhhhccC
Confidence 33444 4778899999985 6888899999886 467 777765 65555555432222221 2221111 22
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. |+|+-.. . ...++...++|+|+|+++..-
T Consensus 97 g~d~v~d~~------g---~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEML------A---NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEESC------H---HHHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecc------c---HHHHHHHHhccCCCCEEEEEe
Confidence 3 8777522 1 246788899999999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.93 E-value=0.032 Score=39.96 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=61.1
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCC----CC-Cc-cEEEe
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKS----IP-AA-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~----~p-~~-D~v~~ 162 (254)
..+++.+|+=+|||. |..+..+++.....+ +++.|. ++-++.+++..-..++.. +..+. .. .+ |+|+-
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~-Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGR-IIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSC-EEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccc-cccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEE
Confidence 477888999899886 888999998765456 899998 665666554322222211 11111 11 22 88765
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.-.- ...+++..++++|+|++++.-..
T Consensus 103 ~~g~--------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 103 AGGG--------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp CSSC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred ccCC--------HHHHHHHHHHHhcCCEEEEEeec
Confidence 3321 24567888999999999997643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.88 E-value=0.27 Score=34.43 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=60.9
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCC-CcEEEeCCCCCC-----------CCCc-c
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIP-GVTHIGGDMFKS-----------IPAA-D 158 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~-~i~~~~~d~~~~-----------~p~~-D 158 (254)
..+++.+|+-+|+| .|..+..+++.. +.+ ++++|. ++-++.+++.. ...+..-+..++ .+.. |
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~-vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhh-ccc-ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 46778899999977 677888888776 468 999998 77666665542 222221111111 1222 7
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+|+-.-. ....++.+.++++|+|++++.-..
T Consensus 101 ~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 101 VTIDCSG--------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEEECSC--------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeeecCC--------ChHHHHHHHHHHhcCCceEEEecC
Confidence 7764221 125678888999999999987643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.68 E-value=0.078 Score=37.71 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHhhcCCCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCC---CC----CCCc-
Q 025363 88 VLEGYNGFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMF---KS----IPAA- 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~---~~----~p~~- 157 (254)
+.+.. ..+++.+|+=+||| .|..+..+++...... +++.|. +.-++.+++..-..++..+-. +. .+..
T Consensus 20 ~~~~~-~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~-v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 20 CINAL-KVTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp HHTTT-CCCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HHHhh-CCCCCCEEEEeCCCHHHhhhhhcccccccce-eeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 34444 47788999999986 4567777887775545 777887 666666555432333332211 11 1223
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+|+-.-. ....++.+.+.++|+|++++.-.
T Consensus 98 D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 98 NFALESTG--------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEECSC--------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEEcCC--------cHHHHHHHHhcccCceEEEEEee
Confidence 87774321 13567888999999999998654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.61 E-value=0.19 Score=35.46 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCC--CCC-----CCCc-cEEEecc
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDM--FKS-----IPAA-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~--~~~-----~p~~-D~v~~~~ 164 (254)
.+++.+||=+|+| .|..+..+++...... +++.|. ++-++.+++.....++..+- .+. -+.. |+|+-..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~-vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPAT-VIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCE-EEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcc-cccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 5678889999976 5566677887776656 888888 66566655543333433221 000 0222 7766432
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. . ...++...+.|+|||++++.-.
T Consensus 109 g-----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 109 G-----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp C-----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred C-----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 2 1 2467888999999999998763
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.41 E-value=0.019 Score=46.59 Aligned_cols=92 Identities=9% Similarity=-0.098 Sum_probs=65.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------------------CCcEEEeCCCCCC--
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------------PGVTHIGGDMFKS-- 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------------~~i~~~~~d~~~~-- 153 (254)
..+|||..||+|..++..+...+..+ ++..|+ +..++.++++ ..+.+...|....
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~-V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCE-EEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 67999999999999998888776556 889999 8777766543 1244455554322
Q ss_pred -CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 -IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 -~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
... .|+|.+-- + ..+..+|..+.++++.||.|.+.-+
T Consensus 125 ~~~~~fDvIDiDP----f--Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----F--GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence 122 28887733 1 2235789999999999999998643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.86 E-value=0.12 Score=36.18 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=57.9
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC-------CCccEEEecc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI-------PAADAIFMKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~-------p~~D~v~~~~ 164 (254)
..+++.+|+=+|+| .|..+..+++.. +.+ ++++|. ++-++.+++..--.++..+-.+.. +..|.++...
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~-Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAM-GLH-VAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHc-CCc-cceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 36778888889976 677777788776 467 999998 766666665433333322211111 1123333321
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. . ...++...+.|+|||++++.-
T Consensus 102 ~----~----~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 102 V----S----NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp S----C----HHHHHHHHTTEEEEEEEEECC
T ss_pred c----c----chHHHHHHHHhcCCcEEEEEE
Confidence 1 1 245788899999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.89 E-value=0.9 Score=31.85 Aligned_cols=96 Identities=9% Similarity=-0.124 Sum_probs=59.4
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC------CCCc-cEEE
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS------IPAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~------~p~~-D~v~ 161 (254)
..+++.+|+=+||| .|..+..+++.....+ +++.|. ++-++.+++..-..++. .|.... .+.. |+++
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~-Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASR-IIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCce-eeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 47788999999986 5667777888776667 899998 77677776653333332 221100 1223 7776
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCC-CCEEEEEcccc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPA-GGKLIACEPVL 198 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~p-gG~l~i~d~~~ 198 (254)
-.-.- ...+......+++ +|++++.-...
T Consensus 103 d~~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 103 ECAGR--------IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp ECSCC--------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred EcCCC--------chHHHHHHHHHHHhcCceEEEEEec
Confidence 53221 2456666766655 69998876543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.23 E-value=0.27 Score=34.18 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=54.8
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC--------CCccEEEec
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI--------PAADAIFMK 163 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~--------p~~D~v~~~ 163 (254)
..+++.+||=.|+|+ |..+..+++. .+.+ +++.+. ++-++.+++..--.+... -.++. ++.|.++..
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~-v~~~~~~~~r~~~~k~~Ga~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKA-MGLN-VVAVDIGDEKLELAKELGADLVVNP-LKEDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHH-TTCE-EEEECSCHHHHHHHHHTTCSEEECT-TTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCCEEEEeecccchhhhhHHHhc-CCCe-EeccCCCHHHhhhhhhcCcceeccc-ccchhhhhcccccCCCceEEee
Confidence 467788998898764 5555556665 4557 888887 666655554322222211 11111 122444332
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+ . ...+....++|+|+|++++.-.
T Consensus 101 ~~----~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 101 AV----S----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SC----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred cC----C----HHHHHHHHHHhccCCceEeccc
Confidence 21 1 2568899999999999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.31 Score=34.09 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=56.4
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CC--C-ccEEEeccccc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP--A-ADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p--~-~D~v~~~~vlh 167 (254)
..+++.+|+=+|+| .|.++..+++.. +++ .+++|. ++-.+.+++...-.++..+-... .. . .|+++-.-.-
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~-~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~- 103 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAH-VVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA- 103 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcc-ccc-chhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec-
Confidence 47788999889875 588888888886 566 777776 55444444332222222111111 11 1 3877753221
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...++...+.++|+|++++.-.
T Consensus 104 -------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 -------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -------CCCHHHHHTTEEEEEEEEECCC
T ss_pred -------chhHHHHHHHHhcCCEEEEecc
Confidence 1235677889999999998754
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=90.80 E-value=0.17 Score=40.58 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=38.8
Q ss_pred cCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-------CCeEEEeec
Q 025363 65 KIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-------ICEGINFDL 130 (254)
Q Consensus 65 ~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-------~~~~~~~D~ 130 (254)
..|+....|...++. ....+.+... .++..+|||+|+|+|.++..+++.... ++ .+.++.
T Consensus 52 Tsp~is~~Fg~~ia~----~~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~-~~~vE~ 118 (365)
T d1zkda1 52 TSPEISQMFGELLGL----WSASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEI 118 (365)
T ss_dssp SHHHHCHHHHHHHHH----HHHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECC
T ss_pred CCCchHHHHHHHHHH----HHHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccce-EEEecc
Confidence 346665666665543 2333444442 445678999999999999988876432 23 566776
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.78 E-value=0.02 Score=40.70 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=63.2
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCC--C-CCCccEEEeccccccC
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFK--S-IPAADAIFMKWVLTTW 169 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~--~-~p~~D~v~~~~vlh~~ 169 (254)
+..+|+=||+| .|..++..+... +.. ++++|. ++.++..+.. .++++...+-.. . +.++|+||..-.+--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~-V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG- 107 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQ-VQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG- 107 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT-
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC-
Confidence 46899999999 566677777776 567 999998 7766655432 445554432211 1 344699987544321
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.....-+-++..+.||||. +|+|...+..
T Consensus 108 -~~aP~lIt~~mv~~Mk~GS--VIVDvaidqG 136 (168)
T d1pjca1 108 -RRAPILVPASLVEQMRTGS--VIVDVAVDQG 136 (168)
T ss_dssp -SSCCCCBCHHHHTTSCTTC--EEEETTCTTC
T ss_pred -cccCeeecHHHHhhcCCCc--EEEEeecCCC
Confidence 1222345678899999999 5567766544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.45 E-value=1.3 Score=30.93 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC-CCCCCC--------CCc-cEEE
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG-DMFKSI--------PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~-d~~~~~--------p~~-D~v~ 161 (254)
..+++.+||=+|+| .|..+..+++.....+ +++.|. ++-.+.+++.....++.. +-.+.. +.+ |+++
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~-Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAAR-IIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCce-EEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 47888999999875 5557777777776667 899998 666666655433333221 111111 223 8887
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCC-CEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAG-GKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pg-G~l~i~d 195 (254)
-..... ..++.....+++| |.+++.-
T Consensus 104 d~~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 104 EVIGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp ECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred ecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence 644332 4466777788887 5555543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.58 E-value=1.2 Score=30.90 Aligned_cols=94 Identities=16% Similarity=0.025 Sum_probs=58.1
Q ss_pred CCCCCCeEEEecC-cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCC-CC--------CCCc-cEEE
Q 025363 94 GFKGVKRLVDVGG-SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMF-KS--------IPAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~-G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~-~~--------~p~~-D~v~ 161 (254)
..+++.+||=+|| |.|..+..+++...... +++.|. ++-.+.+++..--.++..+-. ++ .+.. |+|+
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~-vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASR-IIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhcCc-eEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 4778889988876 46778888888876556 788887 655655554322222221111 11 1223 8887
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
-.-.- ...++.+...+++||.+++.-.
T Consensus 104 d~~G~--------~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 104 ECIGN--------VKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp ECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred ecCCC--------HHHHHHHHHhhcCCceeEEEEe
Confidence 63321 2567888999999987765543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.49 E-value=0.2 Score=35.40 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=51.1
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcE------EEeCCCCCCCCCccEEEecc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVT------HIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~------~~~~d~~~~~p~~D~v~~~~ 164 (254)
++|.=||+|.-..+.+..-.-.+.. ++++|. ++-.+..+.. +... ....|..+.++++|+|++.-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 5778889886544433222223557 999998 6655544321 1111 11222211134569988742
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+......++++++..|+++..+++
T Consensus 81 -----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 81 -----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp -----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred -----chhHHHHHHHHhhhccCCCCEEEE
Confidence 233457899999999999886654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=88.57 E-value=0.11 Score=39.38 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHhhcCCCCCC--CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-------CC--------CCcEEEe
Q 025363 86 TSVLEGYNGFKGV--KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-------SI--------PGVTHIG 147 (254)
Q Consensus 86 ~~i~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-------~~--------~~i~~~~ 147 (254)
+.+.++. ..+.+ .+|||.=||.|.-+..++.. +.+ ++.++. |.+....+ .. .|++++.
T Consensus 76 ~~l~kA~-gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 76 EAVAKAV-GIKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp SHHHHHT-TCBTTBCCCEEETTCTTCHHHHHHHHH--TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hHHHHHh-cCCCCCCCEEEECCCcccHHHHHHHhC--CCE-EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 3455666 35444 48999999999999999988 467 999997 54322211 11 4789999
Q ss_pred CCCCCCCC---C-ccEEEecccc
Q 025363 148 GDMFKSIP---A-ADAIFMKWVL 166 (254)
Q Consensus 148 ~d~~~~~p---~-~D~v~~~~vl 166 (254)
+|..+.+. + .|+|++-=.+
T Consensus 152 ~Ds~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCC
T ss_pred CcHHHHHhccCCCCCEEEECCCC
Confidence 99766432 2 2888874444
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=87.85 E-value=0.98 Score=27.97 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=41.6
Q ss_pred eEEEec-CcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 100 RLVDVG-GSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 100 ~vlDvG-~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
+|-=|| ||+|-.+.+..-+..+.. +++.|. .+..+..++ ..+++..+.-.+.+.+.|+|+.+..+-
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~~~~~t~~L~~-~Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGND-VYGSNIEETERTAYLRK-LGIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHH-TTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCCCChhHHHHHH-CCCeEEeeecccccCCCCEEEEecCcC
Confidence 444455 678876665444445677 899997 355554443 447766554333355569999988875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.14 E-value=0.77 Score=30.35 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=52.1
Q ss_pred CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEeccccccCCHHHHHHH
Q 025363 106 GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTTWTDDECKLI 177 (254)
Q Consensus 106 ~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~~~~~~~~~i 177 (254)
||.|..+..+++.+.+-. ++++|. ++..+.... ..+.++.||..++ + ..++.+++.. . +|.+...+
T Consensus 6 ~G~g~~g~~l~~~L~~~~-i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSE-VFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHC 79 (129)
T ss_dssp ESCCHHHHHHHHTSCGGG-EEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCC-CEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHH
Confidence 567888999999887666 777887 655555433 5788999999876 2 2346665422 1 34555444
Q ss_pred HHHHHHhCCCCCEEEE
Q 025363 178 MENCYKALPAGGKLIA 193 (254)
Q Consensus 178 l~~~~~~L~pgG~l~i 193 (254)
...+ +.+.|..+++.
T Consensus 80 ~~~~-r~~~~~~~iia 94 (129)
T d2fy8a1 80 ILGI-RKIDESVRIIA 94 (129)
T ss_dssp HHHH-HHHCSSSCEEE
T ss_pred HHHH-HHHCCCceEEE
Confidence 4444 45678876655
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.06 E-value=3.1 Score=28.61 Aligned_cols=91 Identities=14% Similarity=-0.001 Sum_probs=53.1
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC---------CCc-cEEE
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI---------PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~---------p~~-D~v~ 161 (254)
..+++.+|+=+|+|. |..+..+++...... +++.|. ++-++.+++..--.++..+-.++. +.. |+|+
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~-Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKR-IIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhch-heeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence 478889999999877 555555666665556 898998 766666665533333321111111 122 8876
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
-.-.- ...+....+.+++||.+++
T Consensus 104 d~~G~--------~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 104 ECVGN--------VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp ECSCC--------HHHHHHHHHTBCTTTCEEE
T ss_pred eecCC--------HHHHHHHHHHhhCCCccee
Confidence 53321 2446677777766644444
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.71 E-value=1.2 Score=28.01 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCCCCCeEEEec-CcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 94 GFKGVKRLVDVG-GSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG-~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.....++|.=|| ||+|-.+.+..-+--+.+ +++.|. ....+...+ ..+.+..++..+.++..|+|+.+..+-
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCcC
Confidence 345567788887 677766633222222556 888886 333333333 457776666544466669999888764
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.70 E-value=1.2 Score=30.56 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhh-CCC--------CCCcEEEeCCCCCCCCCccEEEeccc
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAE-APS--------IPGVTHIGGDMFKSIPAADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~-~~~--------~~~i~~~~~d~~~~~p~~D~v~~~~v 165 (254)
|..+|.=||+|. |.....++...+-.+ .+++|. ++..+. +.+ ..+..+...+-.+...++|+|+....
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~e-l~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCe-EEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 356888889873 333333444444335 888997 433221 111 13444444444444556698887655
Q ss_pred cccCC------------HHHHHHHHHHHHHhCC---CCCEEEEE
Q 025363 166 LTTWT------------DDECKLIMENCYKALP---AGGKLIAC 194 (254)
Q Consensus 166 lh~~~------------~~~~~~il~~~~~~L~---pgG~l~i~ 194 (254)
....+ -....++++++.+.++ |++.+++.
T Consensus 81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv 124 (150)
T d1t2da1 81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 124 (150)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 43322 1234456666655554 88987773
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.54 E-value=2.7 Score=27.50 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=49.1
Q ss_pred eEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEeccccccC
Q 025363 100 RLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTTW 169 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~~ 169 (254)
+++=+|+ |.++..+++.+ -+.+ ++++|. ++.++.++.. ....+.+|..++ + .++|.+++.-.
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~---- 73 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIG---- 73 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcC----
Confidence 3455555 55555555543 2456 899998 8888887764 456677888766 2 22476655321
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++.+...+...+++.+ |..+++.
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~iia 96 (134)
T d2hmva1 74 ANIQASTLTTLLLKEL-DIPNIWV 96 (134)
T ss_dssp SCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred chHHhHHHHHHHHHHc-CCCcEEe
Confidence 1234444455555544 5556654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.44 E-value=2.6 Score=29.39 Aligned_cols=99 Identities=14% Similarity=-0.034 Sum_probs=58.5
Q ss_pred HhhcCCCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC------CCCc
Q 025363 89 LEGYNGFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS------IPAA 157 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~------~p~~ 157 (254)
.+.- ..+++.+|+=+|+| .|..+..+++.....+ ++++|. ++-++.+++..--.++. .|.... .+.+
T Consensus 22 ~~~~-~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~-Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 22 VKTG-KVKPGSTCVVFGLGGVGLSVIMGCKSAGASR-IIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp HTTS-CCCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHhh-CCCCCCEEEEECCCchhHHHHHHHHHcCCce-EEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 3444 47788999999976 5667777777776567 999998 87777776652222221 111101 1223
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhC-CCCCEEEEEccc
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKAL-PAGGKLIACEPV 197 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L-~pgG~l~i~d~~ 197 (254)
|+++-...- ...++.....+ +++|++++.-..
T Consensus 100 ~d~vi~~~g~--------~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 100 VGYTFEVIGH--------LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp CCEEEECSCC--------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred ceEEEEeCCc--------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 776653321 13344444445 556999887643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.25 E-value=1.2 Score=31.54 Aligned_cols=149 Identities=7% Similarity=-0.062 Sum_probs=80.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFKS 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~~ 153 (254)
-.+|.=||+|+=..+.+.+-...+.+ ++++|. ++.++.+.+. .++... +..+.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~ 80 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT--LSYGD 80 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE--SSSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc--ccccc
Confidence 45788888875444443333344778 999998 7665544321 234332 22233
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh--------hccc--
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM--------TIYR-- 223 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-- 223 (254)
+.++|+|+- .+..++ +.-.++++++-+.++|+-.|......++-..-........+.+.++.+ ....
T Consensus 81 ~~~adlViE-av~E~l--~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~ 157 (186)
T d1wdka3 81 FGNVDLVVE-AVVENP--KVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRG 157 (186)
T ss_dssp GGGCSEEEE-CCCSCH--HHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEEC
T ss_pred ccccceeee-eecchH--HHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCC
Confidence 445688886 444443 455689999999999998877755444321000000000011111110 0000
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
......+.+...+++++.|...+.+.+.|
T Consensus 158 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~P 186 (186)
T d1wdka3 158 EKSSDLAVATTVAYAKKMGKNPIVVNDCP 186 (186)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 01112245677888899999888776543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.75 E-value=0.63 Score=30.96 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=52.4
Q ss_pred eEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEeccccccC
Q 025363 100 RLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTTW 169 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~~ 169 (254)
+|+=+|+ |..+..+++.+ .+.. ++++|. |+.++.+.+...+.++.||..+. + ..+|.++..-
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t----- 73 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 73 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCC-cceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----
Confidence 5666665 66666666554 2456 899998 87776655434678899999876 2 2247777621
Q ss_pred CHHHHHHHHHHHHHhCCCCCEE
Q 025363 170 TDDECKLIMENCYKALPAGGKL 191 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l 191 (254)
++++...+.....+.+.+.-.+
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEE
T ss_pred CcHHHHHHHHHHHHHcCCceEE
Confidence 2233334556666778777443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.72 E-value=1.1 Score=31.37 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=58.6
Q ss_pred HHhhcCCCCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCCC-----CC
Q 025363 88 VLEGYNGFKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKSI-----PA 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~~-----p~ 156 (254)
+.+.. ..+++.+||=.| +|.|..+.++++.. +.+ +++.+. ++-.+.+++...-..+. .|+.+.+ +.
T Consensus 17 l~~~~-~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~-vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 17 LCEVG-RLSPGERVLIHSATGGVGMAAVSIAKMI-GAR-IYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGY 93 (183)
T ss_dssp HHTTS-CCCTTCEEEETTTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTC
T ss_pred HHHHh-CCCCCCEEEEECCCCCcccccchhhccc-ccc-ceeeecccccccccccccccccccCCccCHHHHHHHHhCCC
Confidence 33444 477788999877 46788999999876 456 666654 55555555542222222 1121111 22
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ |+|+-... .+.++.+.++|+|+|+++..-
T Consensus 94 g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 94 GVDVVLNSLA---------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CEEEEEECCC---------THHHHHHHHTEEEEEEEEECS
T ss_pred CEEEEEeccc---------chHHHHHHHHhcCCCEEEEEc
Confidence 3 88875332 135678889999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.43 E-value=1.2 Score=31.46 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=55.4
Q ss_pred CCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE--eCCCCCC----CCCc-cEEEecc
Q 025363 95 FKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI--GGDMFKS----IPAA-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~--~~d~~~~----~p~~-D~v~~~~ 164 (254)
..++.+||=-| ||-|.++.++++.. +++ ++.... ++-.+.+++..--..+ ..+..+. -+.. |+|+-.-
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~-Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYT-VEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCC-EEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCc-eEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 55677888887 57888999999886 566 766654 4433333332111111 1111111 1223 8766422
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
- ...+.+..++|+|||+++++-.....
T Consensus 107 -g--------g~~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 107 -G--------GRTLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp -T--------TTTHHHHHHTEEEEEEEEECSCCSSS
T ss_pred -C--------chhHHHHHHHhCCCceEEEeecccCc
Confidence 1 13478899999999999998776443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.83 E-value=0.18 Score=35.91 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred CCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCCCCC-c-cEEEeccccc
Q 025363 96 KGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKSIPA-A-DAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~~p~-~-D~v~~~~vlh 167 (254)
++..+||=.| ||.|..+.++++.. +++ +++... ++-.+.+++..--.++. .+..+.+.. . |.++ ..
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~-Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vv-D~--- 103 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQ-VVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAI-DT--- 103 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCC-EEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEE-ES---
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCC-eEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeE-EE---
Confidence 3445677665 46788999999886 667 887765 55444444321112222 222222222 2 6653 12
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.. ...+.+..+.|+++|+++++-...
T Consensus 104 -Vg----g~~~~~~l~~l~~~Griv~~G~~~ 129 (177)
T d1o89a2 104 -VG----DKVLAKVLAQMNYGGCVAACGLAG 129 (177)
T ss_dssp -SC----HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred -cc----hHHHHHHHHHhccccceEeecccC
Confidence 22 246889999999999999976543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.49 E-value=2.1 Score=29.69 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=60.0
Q ss_pred HHhhcCCCCCCCeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE---eCCCCCCC-----CC
Q 025363 88 VLEGYNGFKGVKRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI---GGDMFKSI-----PA 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~---~~d~~~~~-----p~ 156 (254)
+.+.. ..+++.+||=.|+| .|..+.++++.. +++ +++.+. ++-.+.+++..--.++ ..|+.+.+ +.
T Consensus 20 l~~~~-~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~-Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 20 LRKTY-EIKPDEQFLFHAAAGGVGLIACQWAKAL-GAK-LIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp HHTTS-CCCTTCEEEESSTTBHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTC
T ss_pred HHHHh-CCCCCCEEEEEccccccchHHHHHHHHh-CCe-EeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCC
Confidence 34444 37788899888654 688899998876 467 888877 6555554443211222 22222211 22
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. |+|+-.-. . +.+....+.++|+|++++.-....
T Consensus 97 g~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~g~~~~ 131 (179)
T d1qora2 97 KVRVVYDSVG-----R----DTWERSLDCLQRRGLMVSFGNSSG 131 (179)
T ss_dssp CEEEEEECSC-----G----GGHHHHHHTEEEEEEEEECCCTTC
T ss_pred CeEEEEeCcc-----H----HHHHHHHHHHhcCCeeeecccccC
Confidence 3 76654221 1 246788899999999887654443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=80.44 E-value=3.8 Score=28.42 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=59.7
Q ss_pred HHhhcCCCCCCCeEEEecC--cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC---CCCC-----CCC
Q 025363 88 VLEGYNGFKGVKRLVDVGG--SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD---MFKS-----IPA 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~--G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d---~~~~-----~p~ 156 (254)
+.+.. ..+++.+||=.|+ |.|..+.++++.. +++ +++.+. ++-.+..+....-..+..+ ..+. .+.
T Consensus 21 l~~~~-~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~-vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 21 LLEVC-GVKGGETVLVSAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp HHTTT-CCCSSCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTT
T ss_pred HHHHh-CCCCCCEEEEEeCCCchhHHHHHHHHcc-CCE-EEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcC
Confidence 33444 4788899997775 3677888888887 467 888875 5555544443222222211 1111 122
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ |+|+-.- . .+.+++..++|+|+|++++.-.
T Consensus 98 Gvd~v~D~v-----G----~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 98 GYDCYFDNV-----G----GEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp CEEEEEESS-----C----HHHHHHHGGGEEEEEEEEECCC
T ss_pred CCceeEEec-----C----chhhhhhhhhccCCCeEEeecc
Confidence 3 7766421 2 2467899999999999998754
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| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.19 E-value=0.4 Score=34.24 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEE----------e-------CCCCCC--
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHI----------G-------GDMFKS-- 153 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~----------~-------~d~~~~-- 153 (254)
+..+|+=||+|. |..+...+... +.. ++++|. +..++..+.. ..+++. . .++...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~-V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAV-VMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCE-EEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 467999999995 55666666665 567 999997 6555554432 111110 0 011111
Q ss_pred ------CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 154 ------IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 154 ------~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+.++|+||..-.+-.- ....-+-++..+.||||+ +|+|...+..
T Consensus 106 ~~l~~~l~~aDlVI~talipG~--~aP~lit~~mv~~Mk~GS--VIVDvaidqG 155 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGK--PAPVLITEEMVTKMKPGS--VIIDLAVEAG 155 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTS--CCCCCSCHHHHTTSCTTC--EEEETTGGGT
T ss_pred HHHHHHHHhhhhheeeeecCCc--ccceeehHHHHHhcCCCc--EEEEEeecCC
Confidence 2345998875544321 112235578889999999 4556655433
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