Citrus Sinensis ID: 025365

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----

MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ

ccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHccccccEEEcccEEEEcccccccccEEEEEEEcccccEEEcccccccccccEEEEEEEEcccccEEEEEEcccccccccccccEEEcccccccccEEEccccEEEcEEEEEEcccccEEcccccHHHHHHHHHHHHHcccHHHHccccccccEEcccHHHHHHHHHHHHccccccccc

ccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccEEEEEEcccEEEEccccccccEEEEEEEEccccEEEEcccccccccccccEEEEEEccccccEEEEEEcccccccccccEEEEEcccccEEEEEEccccHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccc

MRSGVPNFCAVALALNdlgykavgirldsgdlaylSCEARKFFRTIekefgvpdfekmSITASNDLNEETLDALNKqghevdafgIGTYLVTCYAQAALGCVFKLVeinkqpriklsedvskvsipckkrsyrlygkegyplvdimtgenepppkvgerilcrhpfneskrayvvPQKVEELLKcywpgssdkrredlptlKDTRERCIKQLEQMrpdhmrrlnptpykvsvSAKLYDFIHFLwlneapvgelq

MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEkefgvpdfEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKqpriklsedvskvsipckkrsyrlygkegypLVDIMTGENEPPPKVGERILCrhpfneskrayvvpqkvEELLkcywpgssdkrredlptlkdTRERCIKQleqmrpdhmrrlnptPYKVSVSAKLYDFIHFLWLNEAPVGELQ

*****PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITA*******TLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTG*******VGERILCRHPFNESKRAYVVPQKVEELLKCYWP**************************************PYKVSVSAKLYDFIHFLWLNE*******

MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIK*********IPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNE*******

*RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPV****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		254	2.2.26 [Sep-21-2011]
Q9VQX4		555	Nicotinate phosphoribosyl	no	no	0.984	0.450	0.615	5e-90
Q55G10		589	Nicotinate phosphoribosyl	yes	no	0.992	0.427	0.536	4e-79
Q95XX1		562	Nicotinate phosphoribosyl	yes	no	0.984	0.444	0.542	7e-76
Q6XQN6		538	Nicotinate phosphoribosyl	yes	no	0.960	0.453	0.417	2e-48
Q6XQN1		538	Nicotinate phosphoribosyl	yes	no	0.933	0.440	0.422	6e-46
Q8CC86		538	Nicotinate phosphoribosyl	yes	no	0.940	0.444	0.421	8e-46
A5PK51		538	Nicotinate phosphoribosyl	yes	no	0.929	0.438	0.426	7e-45
Q6P3H4		546	Nicotinate phosphoribosyl	yes	no	0.929	0.432	0.389	8e-44
O32090		490	Nicotinate phosphoribosyl	yes	no	0.519	0.269	0.423	4e-21
O53770		463	Nicotinate phosphoribosyl	yes	no	0.685	0.375	0.291	7e-08

>sp\|Q9VQX4\|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2	Back alignment and function desciption

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 155/252 (61%), Positives = 194/252 (76%), Gaps = 2/252 (0%)

Query: 2   RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSIT 61
           RSG+ NF AVALALNDLGY A+GIR+DSGDLAYLSC AR+ F  + + F VP F K++I 
Sbjct: 305 RSGLLNFSAVALALNDLGYHALGIRIDSGDLAYLSCLARETFEKVAERFKVPWFNKLTIV 364

Query: 62  ASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVS 121
           ASND+NE+T+ +LN+QGH++D FGIGT+LVTC  Q ALGCV+KLVEIN QPRIKLS+DV 
Sbjct: 365 ASNDINEDTILSLNEQGHKIDCFGIGTHLVTCQRQPALGCVYKLVEINGQPRIKLSQDVE 424

Query: 122 KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEE 181
           KV++P  K +YRLY  +G+ L+D++   +EPPP VG+++LCRHPF ESKRAYV+P  VE 
Sbjct: 425 KVTMPGNKNAYRLYSADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYVIPSHVES 484

Query: 182 LLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIH 241
           L K YW   S K  + LPTL+  RE+    L+ +R DH R LNPTPYKV+VS  LY+FIH
Sbjct: 485 LYKVYW--KSGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYKVAVSDNLYNFIH 542

Query: 242 FLWLNEAPVGEL 253
            LWL  AP+GEL
Sbjct: 543 DLWLQNAPIGEL 554

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1

>sp\|Q55G10\|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1	Back alignment and function description

>sp\|Q95XX1\|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3	Back alignment and function description

>sp\|Q6XQN6\|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2	Back alignment and function description

>sp\|Q6XQN1\|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1	Back alignment and function description

>sp\|Q8CC86\|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1	Back alignment and function description

>sp\|A5PK51\|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2	Back alignment and function description

>sp\|Q6P3H4\|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2	Back alignment and function description

>sp\|O32090\|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1	Back alignment and function description

>sp\|O53770\|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium tuberculosis GN=pncB2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		254
224081698		559	predicted protein [Populus trichocarpa]	1.0	0.454	0.944	1e-140
224094304		559	predicted protein [Populus trichocarpa]	1.0	0.454	0.929	1e-139
255565240		561	nicotinate phosphoribosyltransferase, pu	1.0	0.452	0.925	1e-136
356511877		557	PREDICTED: nicotinate phosphoribosyltran	1.0	0.456	0.897	1e-135
225438748		561	PREDICTED: nicotinate phosphoribosyltran	1.0	0.452	0.901	1e-133
296082406		524	unnamed protein product [Vitis vinifera]	1.0	0.484	0.901	1e-133
343172724		559	nicotinate phosphoribosyltransferase, pa	1.0	0.454	0.877	1e-132
449463957		561	PREDICTED: nicotinate phosphoribosyltran	1.0	0.452	0.897	1e-132
449527307		555	PREDICTED: nicotinate phosphoribosyltran	1.0	0.457	0.897	1e-132
356563622		561	PREDICTED: nicotinate phosphoribosyltran	1.0	0.452	0.885	1e-132

>gi\|224081698\|ref\|XP_002306477.1\| predicted protein [Populus trichocarpa] gi\|222855926\|gb\|EEE93473.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/254 (94%), Positives = 245/254 (96%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           MRSG+PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR IEKEFGVP F KMSI
Sbjct: 306 MRSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRAIEKEFGVPGFGKMSI 365

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
           TASNDLNEETLDALNKQGHEVDA+GIGTYLVTCYAQAALGCVFKLVEIN QPRIKLSEDV
Sbjct: 366 TASNDLNEETLDALNKQGHEVDAYGIGTYLVTCYAQAALGCVFKLVEINNQPRIKLSEDV 425

Query: 121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
           SKVSIPCKKRSYRLYG+EGYPLVDIMTGENEP PKVGERILCRHPFNESKRAYVVPQ+VE
Sbjct: 426 SKVSIPCKKRSYRLYGREGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQQVE 485

Query: 181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFI 240
           ELLKCYWPGSSDK REDLP LKD R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLYDFI
Sbjct: 486 ELLKCYWPGSSDKPREDLPPLKDIRDRCIKQLEIMRPDHMRRLNPTPYKVSVSAKLYDFI 545

Query: 241 HFLWLNEAPVGELQ 254
           HFLWLNEAPVGELQ
Sbjct: 546 HFLWLNEAPVGELQ 559

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224094304\|ref\|XP_002310133.1\| predicted protein [Populus trichocarpa] gi\|222853036\|gb\|EEE90583.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255565240\|ref\|XP_002523612.1\| nicotinate phosphoribosyltransferase, putative [Ricinus communis] gi\|223537174\|gb\|EEF38807.1\| nicotinate phosphoribosyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356511877\|ref\|XP_003524648.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max]	Back alignment and taxonomy information

>gi\|225438748\|ref\|XP_002282786.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296082406\|emb\|CBI21411.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|343172724\|gb\|AEL99065.1\| nicotinate phosphoribosyltransferase, partial [Silene latifolia]	Back alignment and taxonomy information

>gi\|449463957\|ref\|XP_004149696.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449527307\|ref\|XP_004170653.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356563622\|ref\|XP_003550060.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		254
TAIR\|locus:2046872		557	NAPRT2 "nicotinate phosphoribo	1.0	0.456	0.877	1.1e-121
TAIR\|locus:2115095		559	NAPRT1 "nicotinate phosphoribo	0.996	0.452	0.865	1.8e-119
FB\|FBgn0031589		555	CG3714 [Drosophila melanogaste	0.984	0.450	0.615	4.5e-82
DICTYBASE\|DDB_G0268472		589	naprt "nicotinate phosphoribos	0.992	0.427	0.536	3.2e-72
WB\|WBGene00021882		562	Y54G2A.17 [Caenorhabditis eleg	0.984	0.444	0.542	9.9e-71
UNIPROTKB\|Q95XX1		562	Y54G2A.17 "Nicotinate phosphor	0.984	0.444	0.542	9.9e-71
UNIPROTKB\|F1NA80		383	NAPRT1 "Uncharacterized protei	0.925	0.613	0.421	6.9e-47
UNIPROTKB\|F1NY99		539	NAPRT1 "Uncharacterized protei	0.925	0.435	0.421	6.9e-47
UNIPROTKB\|A5PK51		538	NAPRT1 "Nicotinate phosphoribo	0.913	0.431	0.438	4.4e-45
UNIPROTKB\|Q6XQN6		538	NAPRT1 "Nicotinate phosphoribo	0.960	0.453	0.417	7.1e-45

TAIR\|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 223/254 (87%), Positives = 238/254 (93%)

Query:     1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
             M+SG+PNFCAVALALND GYKA+GIRLDSGDLAYLS EAR FF T+E+E  VP F KM +
Sbjct:   304 MKSGIPNFCAVALALNDFGYKALGIRLDSGDLAYLSREARNFFCTVERELKVPGFGKMVV 363

Query:    61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
             TASNDLNEET+DALNKQGHEVDAFGIGTYLVTCY+QAALGCVFKLVEIN QPRIKLSEDV
Sbjct:   364 TASNDLNEETIDALNKQGHEVDAFGIGTYLVTCYSQAALGCVFKLVEINNQPRIKLSEDV 423

Query:   121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
             +KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGER+LCRHPFNESKRAYVVPQ+VE
Sbjct:   424 TKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQRVE 483

Query:   181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFI 240
             ELLKCYW GS+D+ RE LP LK+ R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLYDFI
Sbjct:   484 ELLKCYWRGSADEAREVLPPLKEIRDRCIKQLENMRPDHMRRLNPTPYKVSVSAKLYDFI 543

Query:   241 HFLWLNEAPVGELQ 254
             HFLWLNEAPVGELQ
Sbjct:   544 HFLWLNEAPVGELQ 557

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

TAIR\|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NA80 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NY99 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PK51 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6XQN6 NAPRT1 "Nicotinate phosphoribosyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
4th Layer	2.4.2.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V0531	nicotinate phosphoribosyltransferase (EC-2.4.2.11) (559 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_VIII0550	nicotinate-nucleotide diphosphorylase (carboxylating) (EC-2.4.2.19) (329 aa)	•	•	•	0.941
	gw1.XIII.983.1	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)	•	•	•	0.912
	gw1.70.673.1	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)	•	•	•	0.912
	fgenesh4_pm.C_scaffold_308000002	nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)	•	•	•	0.911
	grail3.0151001701	hypothetical protein (395 aa)		•		0.899
	grail3.0006001701	hypothetical protein (247 aa)		•		0.899
	fgenesh4_pg.C_scaffold_145000062	hypothetical protein (414 aa)		•		0.899
	eugene3.00440120	hypothetical protein (390 aa)		•		0.899
	estExt_fgenesh4_pm.C_970013	SubName- Full=Putative uncharacterized protein; (386 aa)		•		0.899
	gw1.VII.325.1	6,7-dimethyl-8-ribityllumazine synthase (180 aa)			•	0.449

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		254
PLN02885		545	PLN02885, PLN02885, nicotinate phosphoribosyltrans	0.0
PRK09243		464	PRK09243, PRK09243, nicotinate phosphoribosyltrans	2e-60
TIGR01513		443	TIGR01513, NAPRTase_put, putative nicotinate phosp	1e-55
cd01570		327	cd01570, NAPRTase_A, Nicotinate phosphoribosyltran	2e-50
pfam04095		245	pfam04095, NAPRTase, Nicotinate phosphoribosyltran	1e-31
PRK12484		443	PRK12484, PRK12484, nicotinate phosphoribosyltrans	1e-29
cd01567		343	cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt	4e-26
COG1488		405	COG1488, PncB, Nicotinic acid phosphoribosyltransf	1e-22
cd00516		281	cd00516, PRTase_typeII, Phosphoribosyltransferase	1e-14
cd01401		377	cd01401, PncB_like, Nicotinate phosphoribosyltrans	1e-04
PRK05321		400	PRK05321, PRK05321, nicotinate phosphoribosyltrans	1e-04
cd01571		302	cd01571, NAPRTase_B, Nicotinate phosphoribosyltran	2e-04

>gnl\|CDD\|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase	Back alignment and domain information

 Score =  576 bits (1486), Expect = 0.0
 Identities = 227/254 (89%), Positives = 242/254 (95%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           M+SG+PNFCAVALALNDLGYKAVGIRLDSGDLAYLS EARKFFRTIE+E GVP F KMSI
Sbjct: 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSI 351

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
           TASND+NEETLDALNKQGHE+DAFGIGT+LVTCYAQ ALGCV+KLVEIN QPRIKLSEDV
Sbjct: 352 TASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDV 411

Query: 121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
            KV+IPCKKR YRLYGKEGYPLVD+MTGENEPPPKVGERILCRHPFNESKRAYVVPQ+VE
Sbjct: 412 EKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVE 471

Query: 181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFI 240
           ELLKCYW GSS K RE+LP+LK+ RERC+KQLE+MRPDHMRRLNPTPYKVSVSAKLYDFI
Sbjct: 472 ELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVSAKLYDFI 531

Query: 241 HFLWLNEAPVGELQ 254
           HFLWLNEAPVGELQ
Sbjct: 532 HFLWLNEAPVGELQ 545

Length = 545

>gnl\|CDD\|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase	Back alignment and domain information

>gnl\|CDD\|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A	Back alignment and domain information

>gnl\|CDD\|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase (NAPRTase) family	Back alignment and domain information

>gnl\|CDD\|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family	Back alignment and domain information

>gnl\|CDD\|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD	Back alignment and domain information

>gnl\|CDD\|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB	Back alignment and domain information

>gnl\|CDD\|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		254
PLN02885		545	nicotinate phosphoribosyltransferase	100.0
PRK09243		464	nicotinate phosphoribosyltransferase; Validated	100.0
TIGR01513		443	NAPRTase_put putative nicotinate phosphoribosyltra	100.0
PRK12484		443	nicotinate phosphoribosyltransferase; Provisional	100.0
PRK09198		463	putative nicotinate phosphoribosyltransferase; Pro	100.0
PHA02594		470	nadV nicotinamide phosphoribosyl transferase; Prov	100.0
COG1488		405	PncB Nicotinic acid phosphoribosyltransferase [Coe	100.0
KOG2511		420	consensus Nicotinic acid phosphoribosyltransferase	99.97
cd01401		377	PncB_like Nicotinate phosphoribosyltransferase (NA	99.97
PRK05321		400	nicotinate phosphoribosyltransferase; Provisional	99.96
TIGR01514		394	NAPRTase nicotinate phosphoribosyltransferase. Thi	99.96
PF04095		245	NAPRTase: Nicotinate phosphoribosyltransferase (NA	99.96
cd01569		407	PBEF_like pre-B-cell colony-enhancing factor (PBEF	99.94
cd01570		327	NAPRTase_A Nicotinate phosphoribosyltransferase (N	99.93
PRK07188		352	nicotinate phosphoribosyltransferase; Provisional	99.91
cd01567		343	NAPRTase_PncB Nicotinate phosphoribosyltransferase	99.83
PRK08662		343	nicotinate phosphoribosyltransferase; Reviewed	99.76
cd01571		302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	99.69
cd00516		281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	99.26
PF01729		169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.09
PRK05848		273	nicotinate-nucleotide pyrophosphorylase; Provision	97.33
PRK08385		278	nicotinate-nucleotide pyrophosphorylase; Provision	97.3
PRK07896		289	nicotinate-nucleotide pyrophosphorylase; Provision	96.97
cd01573		272	modD_like ModD; Quinolinate phosphoribosyl transfe	96.67
PRK07428		288	nicotinate-nucleotide pyrophosphorylase; Provision	96.33
PRK09016		296	quinolinate phosphoribosyltransferase; Validated	95.78
PRK05742		277	nicotinate-nucleotide pyrophosphorylase; Provision	95.61
TIGR00078		265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	95.2
PRK06106		281	nicotinate-nucleotide pyrophosphorylase; Provision	94.64
cd01568		269	QPRTase_NadC Quinolinate phosphoribosyl transferas	94.3
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	93.24
PRK06552		213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.78
PRK06096		284	molybdenum transport protein ModD; Provisional	92.22
TIGR00640		132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	91.57
cd01572		268	QPRTase Quinolinate phosphoribosyl transferase (QA	91.41
PRK07455		187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.83
TIGR01182		204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	90.61
cd02071		122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	90.34
cd04726		202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	89.94
PRK06978		294	nicotinate-nucleotide pyrophosphorylase; Provision	89.57
PRK06543		281	nicotinate-nucleotide pyrophosphorylase; Provision	88.68
TIGR03128		206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	87.91
PRK05096		346	guanosine 5'-monophosphate oxidoreductase; Provisi	87.88
PF01081		196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	87.49
PRK07114		222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.31
cd00564		196	TMP_TenI Thiamine monophosphate synthase (TMP synt	87.12
PRK08883		220	ribulose-phosphate 3-epimerase; Provisional	87.04
TIGR01305		343	GMP_reduct_1 guanosine monophosphate reductase, eu	86.73
TIGR01334		277	modD putative molybdenum utilization protein ModD.	86.7
COG2185		143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	86.61
COG0157		280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	86.54
cd02072		128	Glm_B12_BD B12 binding domain of glutamate mutase	86.0
TIGR00693		196	thiE thiamine-phosphate pyrophosphorylase. This mo	85.95
PRK09140		206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	85.64
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	85.24
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	85.21
PRK08072		277	nicotinate-nucleotide pyrophosphorylase; Provision	85.12
PRK08745		223	ribulose-phosphate 3-epimerase; Provisional	85.1
PRK00043		212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	84.44
PRK02261		137	methylaspartate mutase subunit S; Provisional	84.34
PRK07807		479	inosine 5-monophosphate dehydrogenase; Validated	84.34
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	83.16
PRK06559		290	nicotinate-nucleotide pyrophosphorylase; Provision	83.05
COG0800		211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	82.47
PRK08091		228	ribulose-phosphate 3-epimerase; Validated	82.45
PRK07695		201	transcriptional regulator TenI; Provisional	82.22
PRK14057		254	epimerase; Provisional	81.75
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	80.77
PRK05718		212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	80.76
PRK05581		220	ribulose-phosphate 3-epimerase; Validated	80.47
TIGR01163		210	rpe ribulose-phosphate 3-epimerase. This family co	80.39
PLN02716		308	nicotinate-nucleotide diphosphorylase (carboxylati	80.02

>PLN02885 nicotinate phosphoribosyltransferase	Back alignment and domain information

Probab=100.00  E-value=3.5e-72  Score=548.76  Aligned_cols=252  Identities=89%  Similarity=1.439  Sum_probs=244.1

Q ss_pred             CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (254)
Q Consensus         1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~   80 (254)
                      ++||++|||+||++|+++|+++.|||+|||||++||+++|++||+++|+|+++|++++||++||||||++|.+|.++|++
T Consensus       292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~  371 (545)
T PLN02885        292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE  371 (545)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCce
Q 025365           81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI  160 (254)
Q Consensus        81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~  160 (254)
                      ||+|||||+|+||.++|++|||||||++||+|++|+|++++|.|+||+|+|||+||++|++.+|+|++.+|++|..++++
T Consensus       372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~  451 (545)
T PLN02885        372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI  451 (545)
T ss_pred             ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999998779999999999999767678899


Q ss_pred             eecCCCCccccccccccccccceeeeeeCCC--CeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCHHHHH
Q 025365          161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSS--DKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYD  238 (254)
Q Consensus       161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~--G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~~L~~  238 (254)
                      .|+||+++|+++.+.++.+++||++||  ++  |+++++.|+|.+||+|++++|++|||+++|+.||++|+|++|++|++
T Consensus       452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~--~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V~~s~~l~~  529 (545)
T PLN02885        452 LCRHPFNESKRAYVVPQRVEELLKCYW--DGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVSAKLYD  529 (545)
T ss_pred             EEeCCccchheeeeccccHHhhhHHHe--ECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCccceeccCHHHHH
Confidence            999999999999999999999999999  66  88889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCCCC
Q 025365          239 FIHFLWLNEAPVGELQ  254 (254)
Q Consensus       239 l~~~L~~~~~~~~~~~  254 (254)
                      ++++||++++|++|++
T Consensus       530 ~~~~l~~~~~~~~~~~  545 (545)
T PLN02885        530 FIHFLWLNEAPVGELQ  545 (545)
T ss_pred             HHHHHHHhcCccccCC
Confidence            9999999999999875

>PRK09243 nicotinate phosphoribosyltransferase; Validated	Back alignment and domain information

>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase	Back alignment and domain information

>PRK12484 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional	Back alignment and domain information

>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]	Back alignment and domain information

>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]	Back alignment and domain information

>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB	Back alignment and domain information

>PRK05321 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase	Back alignment and domain information

>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2	Back alignment and domain information

>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like	Back alignment and domain information

>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A	Back alignment and domain information

>PRK07188 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family	Back alignment and domain information

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed	Back alignment and domain information

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B	Back alignment and domain information

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD	Back alignment and domain information

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2	Back alignment and domain information

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport	Back alignment and domain information

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK09016 quinolinate phosphoribosyltransferase; Validated	Back alignment and domain information

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase	Back alignment and domain information

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK06096 molybdenum transport protein ModD; Provisional	Back alignment and domain information

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain	Back alignment and domain information

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>TIGR01182 eda Entner-Doudoroff aldolase	Back alignment and domain information

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain	Back alignment and domain information

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)	Back alignment and domain information

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase	Back alignment and domain information

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional	Back alignment and domain information

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4	Back alignment and domain information

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI	Back alignment and domain information

>PRK08883 ribulose-phosphate 3-epimerase; Provisional	Back alignment and domain information

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic	Back alignment and domain information

>TIGR01334 modD putative molybdenum utilization protein ModD	Back alignment and domain information

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]	Back alignment and domain information

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]	Back alignment and domain information

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)	Back alignment and domain information

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase	Back alignment and domain information

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK08745 ribulose-phosphate 3-epimerase; Provisional	Back alignment and domain information

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed	Back alignment and domain information

>PRK02261 methylaspartate mutase subunit S; Provisional	Back alignment and domain information

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK08091 ribulose-phosphate 3-epimerase; Validated	Back alignment and domain information

>PRK07695 transcriptional regulator TenI; Provisional	Back alignment and domain information

>PRK14057 epimerase; Provisional	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK05581 ribulose-phosphate 3-epimerase; Validated	Back alignment and domain information

>TIGR01163 rpe ribulose-phosphate 3-epimerase	Back alignment and domain information

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		254
2f7f_A		494	Crystal Structure Of Enterococcus Faecalis Putative		3e-26

>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494

Back alignment and structure

Iteration: 1

Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 25/248 (10%) Query: 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60 +++GVP+ VA + D +G+R+DSGD+AY+S + + ++ F + I Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYIS-------KRVREQLDEAGFTEAKI 289 Query: 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIK 115 ASNDL+E T+ L Q ++D +G+GT L+T Y Q ALG VFKLV I + IK Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349 Query: 116 LSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESK 170 LS + KV+ P KK+ +R+ K EG D +T NE P+ E I HP + Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFI 404 Query: 171 RAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230 YV + +L+ + KR +LPTL + ++ + L+ + ++ R LNP Y V Sbjct: 405 NKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV 462 Query: 231 SVSAKLYD 238 +S ++ Sbjct: 463 DLSTDCWN 470

PyMOL of 2f7f

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		254
2f7f_A		494	Nicotinate phosphoribosyltransferase, putative; st	4e-94
2i1o_A		398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	1e-55
2i14_A		395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	4e-46
3os4_A		407	Naprtase, nicotinate phosphoribosyltransferase; st	2e-37
1vlp_A		441	Naprtase, nicotinate phosphoribosyltransferase; st	3e-36
1yir_A		408	Naprtase 2, nicotinate phosphoribosyltransferase 2	3e-33
1ybe_A		449	Naprtase, nicotinate phosphoribosyltransferase; st	8e-30
2im5_A		394	Nicotinate phosphoribosyltransferase; structural g	3e-25
3dhf_A		484	Nicotinamide phosphoribosyltransferase; NMPRTASE,	1e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494	Back alignment and structure

 Score =  284 bits (728), Expect = 4e-94
 Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 15/250 (6%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           +++GVP+   VA  + D     +G+R+DSGD+AY+S   R+       +     F +  I
Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYISKRVRE-------QLDEAGFTEAKI 289

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-----KQPRIK 115
            ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I       +  IK
Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349

Query: 116 LSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVV 175
           LS +  KV+ P KK+ +R+  K                P+  E I   HP +     YV 
Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVR 409

Query: 176 PQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAK 235
             +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S  
Sbjct: 410 DFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTD 467

Query: 236 LYDFIHFLWL 245
            ++    L  
Sbjct: 468 CWNHKMNLLE 477

PyMOL of 2f7f

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398	Back alignment and structure

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395	Back alignment and structure

>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407	Back alignment and structure

>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441	Back alignment and structure

>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408	Back alignment and structure

>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449	Back alignment and structure

>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394	Back alignment and structure

>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		254
2f7f_A		494	Nicotinate phosphoribosyltransferase, putative; st	100.0
3dhf_A		484	Nicotinamide phosphoribosyltransferase; NMPRTASE,	100.0
2i14_A		395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	100.0
2i1o_A		398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	100.0
2im5_A		394	Nicotinate phosphoribosyltransferase; structural g	99.97
1yir_A		408	Naprtase 2, nicotinate phosphoribosyltransferase 2	99.97
3os4_A		407	Naprtase, nicotinate phosphoribosyltransferase; st	99.97
1ybe_A		449	Naprtase, nicotinate phosphoribosyltransferase; st	99.97
4hl7_A		446	Naprtase, nicotinate phosphoribosyltransferase; st	99.96
1vlp_A		441	Naprtase, nicotinate phosphoribosyltransferase; st	99.96
2jbm_A		299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	99.15
3c2e_A		294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	98.77
3gnn_A		298	Nicotinate-nucleotide pyrophosphorylase; decode bi	98.5
3paj_A		320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	98.44
2b7n_A		273	Probable nicotinate-nucleotide pyrophosphorylase;	98.43
1qap_A		296	Quinolinic acid phosphoribosyltransferase; glycosy	97.99
1qpo_A		284	Quinolinate acid phosphoribosyl transferase; type	97.39
3tqv_A		287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	97.17
1o4u_A		285	Type II quinolic acid phosphoribosyltransferase; s	97.1
3l0g_A		300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	97.07
1x1o_A		286	Nicotinate-nucleotide pyrophosphorylase; transfera	96.35
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	90.53
2yxb_A		161	Coenzyme B12-dependent mutase; alpha/beta, structu	90.04
3ctl_A		231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	87.87
3khj_A		361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	87.67
2v82_A		212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	86.62
4fo4_A		366	Inosine 5'-monophosphate dehydrogenase; structural	84.55
3ffs_A		400	Inosine-5-monophosphate dehydrogenase; beta-alpha	84.52
3hgj_A		349	Chromate reductase; TIM barrel, oxidoreductase; HE	84.23
1rpx_A		230	Protein (ribulose-phosphate 3-epimerase); chloropl	84.22
1tqx_A		227	D-ribulose-5-phosphate 3-epimerase, putative; stru	83.49
1wa3_A		205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	83.3
3l5l_A		363	Xenobiotic reductase A; TIM barrel, oxidoreductase	82.81
1z41_A		338	YQJM, probable NADH-dependent flavin oxidoreductas	82.21
1y0e_A		223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	81.98
1ep3_A		311	Dihydroorotate dehydrogenase B (PYRD subunit); het	80.62
1vc4_A		254	Indole-3-glycerol phosphate synthase; lyase, trypt	80.16
3inp_A		246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	80.07

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1	Back alignment and structure

Probab=100.00  E-value=5.5e-58  Score=444.95  Aligned_cols=235  Identities=35%  Similarity=0.520  Sum_probs=222.5

Q ss_pred             CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (254)
Q Consensus         1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~   80 (254)
                      ++|||++|+++|++|.+. ..+.|||+|||||.++++++|++||++       |+++++|++|||||++.|.+|.++|++
T Consensus       238 l~~gv~~al~~~~~l~~~-~~~~gIRlDSgd~~~l~~~~r~~ld~~-------G~~~~kI~aSggld~~~i~~l~~~G~~  309 (494)
T 2f7f_A          238 LKAGVPSAIRVAREMGDK-INFLGVRIDSGDMAYISKRVREQLDEA-------GFTEAKIYASNDLDENTILNLKMQKSK  309 (494)
T ss_dssp             TTTHHHHHHHHHHHHGGG-SEEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTCEEEECSSCCHHHHHHHHHTTCC
T ss_pred             hhhhHHHHHHHHHHhhhh-cCCeEEEcCCCCHHHHHHHHHHHHHhC-------CCCceEEEEECCCCHHHHHHHHHcCCC
Confidence            358999999999998654 568899999999999999999999998       888999999999999999999999999


Q ss_pred             ccEEeecCcccccCCCCccceEEEEeEE---cCc--cccccCCCCCccCCCcccceeeecC-CCCceeEEEEecCCCCCC
Q 025365           81 VDAFGIGTYLVTCYAQAALGCVFKLVEI---NKQ--PRIKLSEDVSKVSIPCKKRSYRLYG-KEGYPLVDIMTGENEPPP  154 (254)
Q Consensus        81 id~fGVGT~l~t~~~~p~l~~vyKlv~~---~g~--p~~K~S~~~~K~t~PG~K~vyR~~d-~~g~~~~D~i~l~~e~~~  154 (254)
                      +|+|||||+|+++.++|++|+|||||++   ||+  |++|+|++++|.|.||+|+|||+|+ ++|++..|+|++.+|+++
T Consensus       310 ~~sfGvGT~Lt~~~~~~~ld~v~Klv~~~~~~G~~~pv~K~s~~~~K~s~pG~k~v~R~~~~~~g~~~~d~i~~~~e~~~  389 (494)
T 2f7f_A          310 IDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPR  389 (494)
T ss_dssp             CCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEEEEEEEETTCCGG
T ss_pred             EEEEecCcccccCCCCCcccEEEEEEEEEcCCCcCccccccCCCCCCcCCCCceEEEEEeecCCCeEEEEEEEecCCCCc
Confidence            9999999999999999999999999999   998  9999999999999999999999998 579999999999998643


Q ss_pred             CCCCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCH
Q 025365          155 KVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSA  234 (254)
Q Consensus       155 ~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~  234 (254)
                       .++.+.|+||+++|+++.++++..++||+|||  +||+++++.|||++||+|++++|++||++++|+.||++|+|++|+
T Consensus       390 -~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~r~~~p~~y~v~~s~  466 (494)
T 2f7f_A          390 -QEEEIYMFHPVHTFINKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLST  466 (494)
T ss_dssp             -GCSEEEEECSSSTTSEEEEESEEEEECCEEEE--ETTEECCCCCCHHHHHHHHHHHHHHSCHHHHCSSSCCCCCEEECH
T ss_pred             -cccceeeeCcchhhhhccccCccchhhhhhhh--cCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcCCccccCH
Confidence             45678999999999999999999999999999  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 025365          235 KLYDFIHFLWLN  246 (254)
Q Consensus       235 ~L~~l~~~L~~~  246 (254)
                      +|++++++||.+
T Consensus       467 ~l~~~~~~~~~~  478 (494)
T 2f7f_A          467 DCWNHKMNLLEK  478 (494)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999974

PyMOL of 2f7f

>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*	Back alignment and structure

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1	Back alignment and structure

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A	Back alignment and structure

>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}	Back alignment and structure

>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2	Back alignment and structure

>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}	Back alignment and structure

>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2	Back alignment and structure

>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}	Back alignment and structure

>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2	Back alignment and structure

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A	Back alignment and structure

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*	Back alignment and structure

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}	Back alignment and structure

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*	Back alignment and structure

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1	Back alignment and structure

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*	Back alignment and structure

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}	Back alignment and structure

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1	Back alignment and structure

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}	Back alignment and structure

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}	Back alignment and structure

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*	Back alignment and structure

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}	Back alignment and structure

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*	Back alignment and structure

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A	Back alignment and structure

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}	Back alignment and structure

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*	Back alignment and structure

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2	Back alignment and structure

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2	Back alignment and structure

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A	Back alignment and structure

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*	Back alignment and structure

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*	Back alignment and structure

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5	Back alignment and structure

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*	Back alignment and structure

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4	Back alignment and structure

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		254
d2f7fa1		345	c.1.17.1 (A:141-485) Putative nicotinate phosphori	1e-72
d1ytda1		270	c.1.17.1 (A:120-389) Nicotinate phosphoribosyltran	9e-36
d1yira1		255	c.1.17.2 (A:145-399) Nicotinate phosphoribosyltran	9e-32
d1ybea1		266	c.1.17.2 (A:168-433) Nicotinate phosphoribosyltran	3e-31
d1vlpa2		266	c.1.17.2 (A:150-415) Nicotinate phosphoribosyltran	1e-30
d2i14a1		279	c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho	2e-30

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score =  223 bits (569), Expect = 1e-72
 Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 15/246 (6%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           +++GVP+   VA  + D     +G+R+DSGD+AY+S   R+             F +  I
Sbjct: 98  LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYISKRVREQLD-------EAGFTEAKI 149

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIK 115
            ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +       IK
Sbjct: 150 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 209

Query: 116 LSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVV 175
           LS +  KV+ P KK+ +R+  K                P+  E I   HP +     YV 
Sbjct: 210 LSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVR 269

Query: 176 PQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAK 235
             +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S  
Sbjct: 270 DFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTD 327

Query: 236 LYDFIH 241
            ++   
Sbjct: 328 CWNHKM 333

PyMOL of d2f7fa1

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270	Back information, alignment and structure

>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 255	Back information, alignment and structure

>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 266	Back information, alignment and structure

>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266	Back information, alignment and structure

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		254
d2f7fa1		345	Putative nicotinate phosphoribosyltransferase EF26	100.0
d2i14a1		279	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	100.0
d1ytda1		270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	100.0
d1ybea1		266	Nicotinate phosphoribosyltransferase, C-terminal d	100.0
d1yira1		255	Nicotinate phosphoribosyltransferase, C-terminal d	99.97
d1vlpa2		266	Nicotinate phosphoribosyltransferase, C-terminal d	99.96
d1o4ua1		170	Quinolinic acid phosphoribosyltransferase (Nicotin	95.9
d1qpoa1		169	Quinolinic acid phosphoribosyltransferase (Nicotin	95.44
d7reqa2		168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	92.75
d1wa3a1		202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	85.72
d1qapa1		167	Quinolinic acid phosphoribosyltransferase (Nicotin	83.88
d2flia1		217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	83.62

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=7.3e-63  Score=458.48  Aligned_cols=235  Identities=35%  Similarity=0.526  Sum_probs=222.4

Q ss_pred             CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (254)
Q Consensus         1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~   80 (254)
                      +++|++||++|+++|.+. .++.|||+|||||.++++++|++||++       |+++++||+||||||++|.+|.++|++
T Consensus        98 ~~~~~~~a~~~~~~l~~~-~~~~gvR~DSGd~~~~~~~vr~~ld~~-------g~~~v~Ii~Sdglde~~I~~l~~~~~~  169 (345)
T d2f7fa1          98 LKAGVPSAIRVAREMGDK-INFLGVRIDSGDMAYISKRVREQLDEA-------GFTEAKIYASNDLDENTILNLKMQKSK  169 (345)
T ss_dssp             TTTHHHHHHHHHHHHGGG-SEEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTCEEEECSSCCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHhhc-ccccCCCCCCCchHHHHHHHHHHhccc-------cCCceEEEEeCCCCHHHHHHHHHcCCc
Confidence            367999999999999764 567899999999999999999999998       999999999999999999999999999


Q ss_pred             ccEEeecCcccccCCCCccceEEEEeEEcC-----ccccccCCCCCccCCCcccceeeecCC-CCceeEEEEecCCCCCC
Q 025365           81 VDAFGIGTYLVTCYAQAALGCVFKLVEINK-----QPRIKLSEDVSKVSIPCKKRSYRLYGK-EGYPLVDIMTGENEPPP  154 (254)
Q Consensus        81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g-----~p~~K~S~~~~K~t~PG~K~vyR~~d~-~g~~~~D~i~l~~e~~~  154 (254)
                      ||+|||||+|+|+.++|+++||||||+++|     .|++|+|++++|.|+||+|+|||+|+. +|.+..|+|++.+|. +
T Consensus       170 id~FGvGt~L~~~~~~p~l~~v~Klv~i~g~~g~~~p~~K~s~~~~K~t~pG~K~v~R~~~~~~~~~~~D~i~l~~e~-~  248 (345)
T d2f7fa1         170 IDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNED-P  248 (345)
T ss_dssp             CCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEEEEEEEETTCC-G
T ss_pred             eeEeecCcceeecCCCCcccchhcceeecCCCCceeeeeeecCCCCCcCCCCCeeEEEEecCCCCeeEeEEEeecCCC-C
Confidence            999999999999999999999999999987     499999999999999999999999975 488999999999996 4


Q ss_pred             CCCCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCH
Q 025365          155 KVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSA  234 (254)
Q Consensus       155 ~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~  234 (254)
                      ..++.+.|+||.++++++.++++.+++||+|||  ++|+++.++|||+|||+|++++|++||++++|+.|||+|||++|+
T Consensus       249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~--~~Gk~v~~~~sl~eiR~r~~~~l~~l~~~~~rl~nP~~Y~V~ls~  326 (345)
T d2f7fa1         249 RQEEEIYMFHPVHTFINKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLST  326 (345)
T ss_dssp             GGCSEEEEECSSSTTSEEEEESEEEEECCEEEE--ETTEECCCCCCHHHHHHHHHHHHHHSCHHHHCSSSCCCCCEEECH
T ss_pred             CcCcceeeecCccchhheeccCcchhhhhhHHh--cCCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcCCeeccCH
Confidence            457788999999999999999999999999999  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 025365          235 KLYDFIHFLWLN  246 (254)
Q Consensus       235 ~L~~l~~~L~~~  246 (254)
                      +|++++++|+.+
T Consensus       327 ~L~~~~~~l~~~  338 (345)
T d2f7fa1         327 DCWNHKMNLLEK  338 (345)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999974

PyMOL of d2f7fa1

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}	Back information, alignment and structure

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure